Citrus Sinensis ID: 022216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEcccccHHHcccccccccEEEEEEcccccccHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccEEEccccccccccccHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccEEEEcccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccHHcccEEEEEEccccHHHHHHHcccccEEEEEEcccccccccccccEEcHHHHHHHHHHHHHccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHHHHcHHHHccEEEEEccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
matplilrncptlctlnsnqpplrtltltkhfsvsttktwshsinstkmgkseitEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKakttlskdnpslqiVKADVTEGSAKLSeaigddseaVVCAtgfqpgwdlfapwkvdnfgtvNLVEACRKRGVNRFILISSILVngaamgqilnPAYIFLNVFGLTLIAKLQAEQYIRKSginytiirpgglrnepptgniimetedtlyegtisRDQVAEVAVEALlhpessykVVEIISrvdapkrsyEDLFGSIKQR
Flexible Loop (DISEMBL)
matplilrncptlctlnsnqpplRTLTLTKHFSvsttktwshsinstkmgkSEITEEAeenvsvkqkkifvagatgssgkRIVEQLLAKGFAVKAGVRDLDKakttlskdnpslqivkADVTEGSAKLSeaigddseaVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGinytiirpgglrnepptgNIIMETEDTLYEGTISRDQVAEVAVEAllhpessykvveiisrvdapkrsyedlfgsikqr
Low Complexity Region (SEG)
MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQR
Disordered region (IsUnstruct)
****LILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTW***************************KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL*******************************IGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVD****************
Disordered Region (DISOPRED)
***PL***NCP**********************************************************FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA****SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIK**
Disordered Region (DISEMBL)
MATPLILRNCPTLCTLNSNQPPLRTLTLTKHF*******************************VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQR
Disordered Region (DISPRO)
*ATPLILRNCPTLCTLNSNQPP******************************************KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q8H124	280	Uncharacterized protein A	yes	no	0.923	0.992	0.668	1e-113
Q8SKU2	534	Protein TIC 62, chloropla	N/A	no	0.790	0.445	0.375	2e-30
Q8H0U5	641	Protein TIC 62, chloropla	no	no	0.797	0.374	0.343	4e-27
Q04304	227	UPF0659 protein YMR090W O	yes	no	0.637	0.845	0.316	7e-13
O80934	325	Uncharacterized protein A	no	no	0.714	0.661	0.289	4e-12
O07609	214	Uncharacterized sugar epi	yes	no	0.607	0.855	0.321	3e-10
Q94EG6	253	Uncharacterized protein A	no	no	0.727	0.865	0.280	1e-09
Q3ZBE9	356	Sterol-4-alpha-carboxylat	yes	no	0.358	0.303	0.35	3e-08
P51238	319	Uncharacterized protein y	N/A	no	0.458	0.432	0.308	1e-07
Q9R1J0	362	Sterol-4-alpha-carboxylat	yes	no	0.405	0.337	0.313	6e-07

>sp|Q8H124|Y2446_ARATH Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/299 (66%), Positives = 243/299 (81%), Gaps = 21/299 (7%)

Query: 1   MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEE 60
           MAT L+LR+   +    S+       T  K F          S  S KM      E+ E 
Sbjct: 1   MATSLLLRHSSAVFFSQSS-----FFTKNKSF---------RSFTSIKM------EKGEA 40

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKAD 120
             +VK KK+FVAGATG +GKRIVEQLL++GFAVKAGVRD++KAKT+  KD+PSLQIV+AD
Sbjct: 41  ENAVKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSF-KDDPSLQIVRAD 99

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           VTEG  KL+E IGDDS+AV+CATGF+PG+D+F PWKVDNFGTVNLV+ACRK+GV +F+L+
Sbjct: 100 VTEGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLV 159

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
           SSILVNGAAMGQILNPAY+FLN+FGLTL+AKLQAE+YI+KSGINYTI+RPGGL+N+PPTG
Sbjct: 160 SSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTG 219

Query: 241 NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIK 299
           N++ME EDTLYEG+ISRD VAEVAVEALL  ESS+KVVEI++R +APKRSY+DLF S+K
Sbjct: 220 NVVMEPEDTLYEGSISRDLVAEVAVEALLQEESSFKVVEIVARAEAPKRSYKDLFASVK 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SKU2|TIC62_PEA Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/277 (37%), Positives = 148/277 (53%), Gaps = 39/277 (14%)

Query: 45  NSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK 104
           +ST  G  E T+  ++N+      +FVAGATG  G R V +L+  GF V+AGVR+  KA 
Sbjct: 73  SSTAEGIPEKTDSKDDNL------VFVAGATGKVGSRTVRELIKLGFKVRAGVRNAQKAG 126

Query: 105 T------TLSKDNPS--------LQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG-- 148
                   L  D  S        L+IV+ D+ E + ++  A+G+ S  V+CA G      
Sbjct: 127 ALVQSVKQLKLDGASGGGEAVEKLEIVECDL-EKADQIGSALGNAS-TVICAIGASEKEI 184

Query: 149 WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL 208
           +D+  P ++D   T NLV+A     VN FIL++S+  N   +     PA I LN+F   L
Sbjct: 185 FDITGPCRIDYRATKNLVDAATVAKVNHFILVTSLGTNKFGL-----PAAI-LNLFWGVL 238

Query: 209 IAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG------NIIMETEDTLYEGTISRDQVAE 262
           I K +AE+ +  SGI YTI+RPGG+  E PT       N+ + TEDTL+ G +S  QVAE
Sbjct: 239 IWKRKAEEALLASGIPYTIVRPGGM--ERPTDAYKETHNVTLSTEDTLFGGQVSNLQVAE 296

Query: 263 VAVEALLHPESSY-KVVEIISRVDAPKRSYEDLFGSI 298
           +      +P+ SY K+VE+I+   AP    E L   I
Sbjct: 297 LMAIMAKNPDLSYCKIVEVIAETTAPLTPAEKLLTRI 333

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids.

Pisum sativum (taxid: 3888)

>sp|Q8H0U5|TIC62_ARATH Protein TIC 62, chloroplastic OS=Arabidopsis thaliana GN=TIC62 PE=1 SV=1

 Score =  122 bits (306), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 143/274 (52%), Gaps = 34/274 (12%)

Query: 52  SEITEEAEENVSVKQKK-IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA------- 103
           S +TE +  N++ K++  +FVAGATG  G R V +LL  GF V+AGVR   +A       
Sbjct: 66  SVVTEASPTNLNSKEEDLVFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAGSLVQSV 125

Query: 104 -----KTTLSKDNP--SLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG--WDLFAP 154
                + T     P   L+IV+ D+ E    +  A+G+ S  ++C  G       D+  P
Sbjct: 126 KEMKLQNTDEGTQPVEKLEIVECDL-EKKDSIQPALGNAS-VIICCIGASEKEISDITGP 183

Query: 155 WKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA 214
           +++D   T NLV+A     VN FIL++S+  N         PA I LN+F   L  K +A
Sbjct: 184 YRIDYLATKNLVDAATSAKVNNFILVTSLGTNKFGF-----PAAI-LNLFWGVLCWKRKA 237

Query: 215 EQYIRKSGINYTIIRPGGLRNEPPTG------NIIMETEDTLYEGTISRDQVAEVAVEAL 268
           E+ + +SG+NY I+RPGG+  E PT       N+ +  +DTL+ G +S  QVAE+     
Sbjct: 238 EEALIESGLNYAIVRPGGM--ERPTDAYKETHNLTLALDDTLFGGQVSNLQVAELLACMA 295

Query: 269 LHPESSY-KVVEIISRVDAPKRSYEDLFGSIKQR 301
            +P+ S+ K+VE+++   AP    E L   I  +
Sbjct: 296 KNPQLSFSKIVEVVAETTAPLTPIEKLLEKIPSK 329

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Acts as a membrane anchor of LFNR1 and LFNR2. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q04304|YMY0_YEAST UPF0659 protein YMR090W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR090W PE=1 SV=1

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 29/221 (13%)

Query: 68  KIFVAGATGSSGKRIVEQLLAK-GFAVK-AGVRDLDKA---KTTLSKDNPSLQIVKADVT 122
           K+ V GA+G  G+ ++ QL A   F+   A VR  D+    K  +  D     I  A V+
Sbjct: 5   KVAVVGASGKVGRLLINQLKANDSFSTPLAIVRTQDQVNYFKNEVGVDASLTDIENASVS 64

Query: 123 EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
           E    +++AI    +AVV + G   G  +   + VD  G + +VEAC K G+ RF+++S+
Sbjct: 65  E----ITDAI-KAYDAVVFSAG-AGGKGMERIFTVDLDGCIKVVEACEKAGIKRFVVVSA 118

Query: 183 ILVNGAAMGQILNPAYIFLNVFGLT--LIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
           +                + N+ GL    IAK  A++ +R S ++YTI++PG L     TG
Sbjct: 119 LKAEDRDF---------WYNIKGLREYYIAKRSADREVRNSNLDYTILQPGSLELNKGTG 169

Query: 241 NIIMETEDTLYEG-----TISRDQVAEVAVEALLHPESSYK 276
             +++  D L E      +I+R+ VA   VE+LLHP ++ K
Sbjct: 170 --LLQPLDKLEEKASVNYSINREDVASFIVESLLHPNATVK 208

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O80934|Y2766_ARATH Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 128/252 (50%), Gaps = 37/252 (14%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GA G +G+ + ++L  +     A  R L + K +  K N   ++   D+ + +A +
Sbjct: 79  VLVTGAGGRTGQIVYKKLKERSEQFVA--RGLVRTKESKEKINGEDEVFIGDIRD-TASI 135

Query: 129 SEAI-GDDSEAVVCAT--GFQPGWD---------LF----APWKVDNFGTVNLVEACRKR 172
           + A+ G D+  ++ +     +PG+D          F     P +VD  G  N ++A +  
Sbjct: 136 APAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAA 195

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG 232
           GV + +L+ S+   G  +   LN +    N+    L+ K +AEQY+  SGI YTIIR GG
Sbjct: 196 GVKQIVLVGSM--GGTNINHPLN-SIGNANI----LVWKRKAEQYLADSGIPYTIIRAGG 248

Query: 233 LRNEPPTGNI---IMETEDTLYEG---TISRDQVAEVAVEALLHPESSYKVVEIISRVDA 286
           L+++   G I   ++  +D L E    TI+R  VAEV V+AL   E+ +K +++ S+ + 
Sbjct: 249 LQDK--DGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEG 306

Query: 287 ---PKRSYEDLF 295
              P + ++ LF
Sbjct: 307 TGTPTKDFKALF 318

Arabidopsis thaliana (taxid: 3702)

>sp|O07609|YHFK_BACSU Uncharacterized sugar epimerase YhfK OS=Bacillus subtilis (strain 168) GN=yhfK PE=2 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 22/205 (10%)

Query: 68  KIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           K+F+ GA G  G+R+V         +++A VR   K +   S +    + V A++ EGS 
Sbjct: 2   KVFLIGANGQIGQRLVSLFQDNPDHSIRAMVR---KEEQKASLEAAGAEAVLANL-EGSP 57

Query: 127 KLSEAIGDDSEAVV--CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
           +   A     +A++    +G   G+D      VD  G    +EA    G+ RFI++S++ 
Sbjct: 58  EEIAAAAKGCDAIIFTAGSGGSTGYD--KTLLVDLDGAAKAIEAAAIAGIKRFIMVSALQ 115

Query: 185 V-NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNII 243
             N     + L P Y+          AK  A++ +  SG+ YTIIRPGGLRNEP TG + 
Sbjct: 116 AHNRENWNEALKPYYV----------AKHYADKILEASGLTYTIIRPGGLRNEPGTGTVS 165

Query: 244 METEDTLYEGTISRDQVAEVAVEAL 268
              +  L  G ISRD VA+  + +L
Sbjct: 166 AAKD--LERGFISRDDVAKTVIASL 188

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q94EG6|Y5224_ARATH Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 41/260 (15%)

Query: 69  IFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
           + V GA+G +G +IV + L +G   F  K  VR    +     K      +   D+T+  
Sbjct: 7   VLVTGASGRTG-QIVYKKLKEGSDKFVAKGLVR----SAQGKEKIGGEADVFIGDITDAD 61

Query: 126 AKLSEAIGDDSEAVVCAT--GFQPGWD---------LFA----PWKVDNFGTVNLVEACR 170
           +      G D+  ++ +     +PG+D         +F     P +VD  G  N ++A +
Sbjct: 62  SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121

Query: 171 KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL--TLIAKLQAEQYIRKSGINYTII 228
             GV   +++ S       MG   NP +  LN  G    L+ K +AEQY+  SG  YTII
Sbjct: 122 VAGVKHIVVVGS-------MGGT-NPDHP-LNKLGNGNILVWKRKAEQYLADSGTPYTII 172

Query: 229 RPGGLRN-EPPTGNIIMETEDTLYE---GTISRDQVAEVAVEALLHPESSYKVVEIISRV 284
           R GGL + E     +++  +D L +    T+ R  VAEV ++ALL  E+  K  ++ S+ 
Sbjct: 173 RAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKP 232

Query: 285 DA---PKRSYEDLFGSIKQR 301
           +    P + ++ LF  +  R
Sbjct: 233 EGTSTPTKDFKALFSQVTSR 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 12/120 (10%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K K+  V G  G  G+ +VEQLLA+G+AV   V D+ +       DNP +Q    D+   
Sbjct: 19  KAKRCTVIGGCGFLGQHMVEQLLARGYAVN--VFDIRQG-----FDNPRVQFFLGDLCS- 70

Query: 125 SAKLSEAIGDDSEAVVCAT--GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
              L  A+   S    CA+   F    +LF  ++V+  GT N++E C++ GV + IL SS
Sbjct: 71  QQDLYPALKGVSTVFHCASPPPFNNNKELF--YRVNYIGTKNVIETCKEAGVQKLILTSS 128

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

>sp|P51238|YCF39_PORPU Uncharacterized protein ycf39 OS=Porphyra purpurea GN=ycf39 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 34/172 (19%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GATG+ G++IV + L +G+ VK  VR+L K+          L+   A++  G  KL
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSAF--------LKEWGAELVYGDLKL 54

Query: 129 SEAIGDD---SEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            E+I        AV+ A+  +P  D +   ++D  G + L+EA +   V RFI  S    
Sbjct: 55  PESILQSFCGVTAVIDASTSRPS-DPYNTEQIDLDGKIALIEAAKAAKVQRFIFFS---- 109

Query: 186 NGAAMGQILN----PAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
                  ILN    P    +N+       K Q   Y++KS I+YT+   GG 
Sbjct: 110 -------ILNADQYPKVPLMNL-------KSQVVNYLQKSSISYTVFSLGGF 147

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 12/134 (8%)

Query: 51  KSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD 110
           + ++T     N   K KK  V G +G  G+ +VEQLL +G+ V   V D+ +       D
Sbjct: 11  RGQVTGTHLTNDISKAKKCTVIGGSGFLGQHMVEQLLERGYTVN--VFDIHQG-----FD 63

Query: 111 NPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT--GFQPGWDLFAPWKVDNFGTVNLVEA 168
           NP +Q    D+      L  A+   S    CA+   +    +LF  ++V+  GT  ++E 
Sbjct: 64  NPRVQFFIGDLCN-QQDLYPALKGVSTVFHCASPPPYSNNKELF--YRVNFIGTKTVIET 120

Query: 169 CRKRGVNRFILISS 182
           CR+ GV + IL SS
Sbjct: 121 CREAGVQKLILTSS 134

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
225463460	296	PREDICTED: uncharacterized protein At2g3	0.970	0.986	0.773	1e-127
297740671	335	unnamed protein product [Vitis vinifera]	0.970	0.871	0.773	1e-127
358248271	290	uncharacterized protein LOC100812074 [Gl	0.923	0.958	0.782	1e-124
357478309	292	hypothetical protein MTR_4g115730 [Medic	0.960	0.989	0.753	1e-123
224114353	254	predicted protein [Populus trichocarpa]	0.830	0.984	0.852	1e-121
356512181	292	PREDICTED: uncharacterized protein At2g3	0.930	0.958	0.772	1e-121
147811195	237	hypothetical protein VITISV_030015 [Viti	0.774	0.983	0.879	1e-116
449433642	308	PREDICTED: uncharacterized protein At2g3	0.853	0.834	0.783	1e-115
297823235	285	At2g34460/T31E10.20 [Arabidopsis lyrata	0.843	0.891	0.749	1e-111
30686068	280	NAD(P)-binding Rossmann-fold-containing	0.923	0.992	0.668	1e-111

>gi|225463460|ref|XP_002276135.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Vitis vinifera]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/305 (77%), Positives = 260/305 (85%), Gaps = 13/305 (4%)

Query: 1   MATPLILRNCPTLCTLNSN----QPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITE 56
           MA+PL+L    TL TL+++    +PPL  +     FS+   +  SHS+ ST+M  SEITE
Sbjct: 1   MASPLLLFRNTTLSTLHNHYRHHRPPLPAVL----FSIKRRR--SHSLYSTQMEGSEITE 54

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI 116
           E E  V+VK K IFVAGATG++GKRIVEQLLAKGFAVKAGVRDLDKAKTT    NPSLQI
Sbjct: 55  EVE--VTVK-KTIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDLDKAKTTFPGGNPSLQI 111

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 176
           VKADVTEGS KL+EAIGDDS+AV+CATGFQ  WDL APWKVDNFGTVNLVEACRK GVNR
Sbjct: 112 VKADVTEGSVKLAEAIGDDSDAVICATGFQRSWDLLAPWKVDNFGTVNLVEACRKLGVNR 171

Query: 177 FILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNE 236
           FILISSILVNGAAMGQILNPAYIFLN FGL LIAKLQAEQYIRKSGINYTIIRPGGLRN+
Sbjct: 172 FILISSILVNGAAMGQILNPAYIFLNAFGLILIAKLQAEQYIRKSGINYTIIRPGGLRND 231

Query: 237 PPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFG 296
           PPTGNI+ME EDTL EGTISRD VAEVAVEAL+HPE+SYKVVEI+SR DAPKRS++DLF 
Sbjct: 232 PPTGNIVMEPEDTLSEGTISRDHVAEVAVEALVHPEASYKVVEIVSRTDAPKRSFKDLFA 291

Query: 297 SIKQR 301
           SIKQR
Sbjct: 292 SIKQR 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740671|emb|CBI30853.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/305 (77%), Positives = 260/305 (85%), Gaps = 13/305 (4%)

Query: 1   MATPLILRNCPTLCTLNSN----QPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITE 56
           MA+PL+L    TL TL+++    +PPL  +     FS+   +  SHS+ ST+M  SEITE
Sbjct: 40  MASPLLLFRNTTLSTLHNHYRHHRPPLPAVL----FSIKRRR--SHSLYSTQMEGSEITE 93

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI 116
           E E  V+VK K IFVAGATG++GKRIVEQLLAKGFAVKAGVRDLDKAKTT    NPSLQI
Sbjct: 94  EVE--VTVK-KTIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDLDKAKTTFPGGNPSLQI 150

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 176
           VKADVTEGS KL+EAIGDDS+AV+CATGFQ  WDL APWKVDNFGTVNLVEACRK GVNR
Sbjct: 151 VKADVTEGSVKLAEAIGDDSDAVICATGFQRSWDLLAPWKVDNFGTVNLVEACRKLGVNR 210

Query: 177 FILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNE 236
           FILISSILVNGAAMGQILNPAYIFLN FGL LIAKLQAEQYIRKSGINYTIIRPGGLRN+
Sbjct: 211 FILISSILVNGAAMGQILNPAYIFLNAFGLILIAKLQAEQYIRKSGINYTIIRPGGLRND 270

Query: 237 PPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFG 296
           PPTGNI+ME EDTL EGTISRD VAEVAVEAL+HPE+SYKVVEI+SR DAPKRS++DLF 
Sbjct: 271 PPTGNIVMEPEDTLSEGTISRDHVAEVAVEALVHPEASYKVVEIVSRTDAPKRSFKDLFA 330

Query: 297 SIKQR 301
           SIKQR
Sbjct: 331 SIKQR 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248271|ref|NP_001239852.1| uncharacterized protein LOC100812074 [Glycine max] gi|255645253|gb|ACU23124.1| unknown [Glycine max]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/281 (78%), Positives = 244/281 (86%), Gaps = 3/281 (1%)

Query: 21  PPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGK 80
           P      L KHF+  ++      +N  KM  SEI+E+  E++  K KK+FVAGATGS+GK
Sbjct: 13  PTFHQRHLRKHFTAPSSSL--RLLNLAKMEGSEISEQVGEDLGAK-KKVFVAGATGSTGK 69

Query: 81  RIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV 140
           RIVEQLLAKGFAVKAGVRD+DKAKTTLS  NPSLQIVKADVTEGS KL+EAIGDDSEAVV
Sbjct: 70  RIVEQLLAKGFAVKAGVRDVDKAKTTLSSANPSLQIVKADVTEGSDKLAEAIGDDSEAVV 129

Query: 141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF 200
           CATGF+PGWDL APWKVDNFGTVNLVEACRKR VNRFILISSILVNGAAMGQ+ NPAYIF
Sbjct: 130 CATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLFNPAYIF 189

Query: 201 LNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQV 260
           LNVFGLTL+AKLQAE+YIRKSGINYTIIRPGGLRN+PPTGNI+ME EDTLYEG+ISR  V
Sbjct: 190 LNVFGLTLVAKLQAEKYIRKSGINYTIIRPGGLRNDPPTGNIVMEPEDTLYEGSISRSLV 249

Query: 261 AEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQR 301
           AEVAVEAL +PE+SYKVVEI+SR DAPKR Y DLFGSI+Q+
Sbjct: 250 AEVAVEALAYPEASYKVVEIVSRPDAPKRPYHDLFGSIRQQ 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478309|ref|XP_003609440.1| hypothetical protein MTR_4g115730 [Medicago truncatula] gi|355510495|gb|AES91637.1| hypothetical protein MTR_4g115730 [Medicago truncatula] gi|388494964|gb|AFK35548.1| unknown [Medicago truncatula]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/304 (75%), Positives = 261/304 (85%), Gaps = 15/304 (4%)

Query: 1   MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSV-STTKTWSHSI-NSTKMGKSEITEEA 58
           MA PLI RN PT  T  S+         T HF+  S+ +T S +I N  KM  SEIT++A
Sbjct: 1   MAFPLIARN-PTFHTFPSH---------THHFTAPSSFRTKSLTIINFAKMEGSEITQQA 50

Query: 59  -EENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIV 117
            ++++S+K KK+FVAGATGS+GKRIVEQLLAKGFAVKAGVRDLDKAKT+LS  NPSLQ V
Sbjct: 51  VDDDLSLK-KKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDLDKAKTSLSA-NPSLQFV 108

Query: 118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRF 177
           K DVTEGS KL+EAIGDD+EAVVCATGF+PGWDL APWKVDNFGTVNLVEACRK  VNRF
Sbjct: 109 KVDVTEGSDKLAEAIGDDTEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKVNVNRF 168

Query: 178 ILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEP 237
           ILISSILVNGAAMGQ+LNPAYIFLNVFGLTL+AKLQAE +IRKSGINYTIIRPGGL+N+P
Sbjct: 169 ILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENHIRKSGINYTIIRPGGLKNDP 228

Query: 238 PTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGS 297
           PTGN++ME EDTLYEG+ISRDQVAEVAVE+L +PE+SYKVVEI++R DAPKR+Y DLFGS
Sbjct: 229 PTGNVVMEPEDTLYEGSISRDQVAEVAVESLAYPEASYKVVEIVARPDAPKRAYHDLFGS 288

Query: 298 IKQR 301
           I QR
Sbjct: 289 IVQR 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114353|ref|XP_002316736.1| predicted protein [Populus trichocarpa] gi|222859801|gb|EEE97348.1| predicted protein [Populus trichocarpa]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/250 (85%), Positives = 232/250 (92%)

Query: 52  SEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN 111
           +EITEEA+ENV+ K+KKIFVAGATGS+GKRIVEQLLAKGF VKAGVRDLDKAKT LS+ N
Sbjct: 5   NEITEEAKENVNQKKKKIFVAGATGSTGKRIVEQLLAKGFEVKAGVRDLDKAKTILSEHN 64

Query: 112 PSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK 171
           PSLQIV ADVT+GS KL +AIGDDSEAV+CATGF+PGW+LFAPWKVDN GTVNLVEACRK
Sbjct: 65  PSLQIVTADVTKGSDKLVQAIGDDSEAVICATGFRPGWNLFAPWKVDNLGTVNLVEACRK 124

Query: 172 RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
            GV RFILISSILVNGAAMGQILNPAYIFLNVFGLTL+AKLQAE YIRKSGINYTI+RP 
Sbjct: 125 LGVKRFILISSILVNGAAMGQILNPAYIFLNVFGLTLVAKLQAENYIRKSGINYTIVRPA 184

Query: 232 GLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSY 291
           GLRNEPP+GN++ME EDTLYEG ISRD VAEVAVEAL  PESSYKVVEI+SR DAPKR+Y
Sbjct: 185 GLRNEPPSGNLVMEPEDTLYEGIISRDVVAEVAVEALGLPESSYKVVEIVSRADAPKRTY 244

Query: 292 EDLFGSIKQR 301
           EDLFGSIKQ+
Sbjct: 245 EDLFGSIKQK 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512181|ref|XP_003524799.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Glycine max]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/281 (77%), Positives = 243/281 (86%), Gaps = 1/281 (0%)

Query: 21  PPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGK 80
           P      L +HF+  ++ +    +N  KM  SEI+E+        +KK+FVAGATGS+GK
Sbjct: 13  PTFHQRHLKQHFTAPSSSS-LRLLNLAKMEGSEISEQVVGEDLGAKKKVFVAGATGSTGK 71

Query: 81  RIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV 140
           RIVEQLLAKGFAVKAGVRD+DKAKTTLS  NPSLQIVKADVTEGS KL+EAIGDDSEAVV
Sbjct: 72  RIVEQLLAKGFAVKAGVRDIDKAKTTLSSANPSLQIVKADVTEGSDKLAEAIGDDSEAVV 131

Query: 141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF 200
           CATGF+PGWDL APWKVDNFGTVNLVEACRKR VNRFILISSILVNGAAMGQ+LNPAYIF
Sbjct: 132 CATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLLNPAYIF 191

Query: 201 LNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQV 260
           LNVFGLTL+AKLQAE+YIRKSGINYTIIRPGGLRN+PPTGN++ME EDTLYEG+ISRD V
Sbjct: 192 LNVFGLTLVAKLQAEKYIRKSGINYTIIRPGGLRNDPPTGNVVMEPEDTLYEGSISRDLV 251

Query: 261 AEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQR 301
           AEVAVEAL +PE+ YKVVEI+SR DAPKR Y DLFGSI+Q+
Sbjct: 252 AEVAVEALAYPEAFYKVVEIVSRPDAPKRPYHDLFGSIRQQ 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811195|emb|CAN70158.1| hypothetical protein VITISV_030015 [Vitis vinifera]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/233 (87%), Positives = 217/233 (93%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           IFVAGATG++GKRIVEQLLAKGFAVKAGVRDLDKAKTT    NPSLQIVKADVTEGS KL
Sbjct: 5   IFVAGATGNTGKRIVEQLLAKGFAVKAGVRDLDKAKTTFPGGNPSLQIVKADVTEGSVKL 64

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
           +EAIGDDS+AV+CATGFQ  WDL APWKVDNFGTVNLVEACRK GVNRFILISSILVNGA
Sbjct: 65  AEAIGDDSDAVICATGFQRSWDLLAPWKVDNFGTVNLVEACRKLGVNRFILISSILVNGA 124

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETED 248
           AMGQILNPAYIFLN FGL LIAKLQAEQYIRKSGINYTIIRPGGLRN+PPTGNI+ME ED
Sbjct: 125 AMGQILNPAYIFLNAFGLILIAKLQAEQYIRKSGINYTIIRPGGLRNDPPTGNIVMEPED 184

Query: 249 TLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQR 301
           TL EGTISRD VAEVAVEAL+HPE+SYKVVEI+SR DAPKRS++DLF SIKQR
Sbjct: 185 TLSEGTISRDHVAEVAVEALVHPEASYKVVEIVSRTDAPKRSFKDLFASIKQR 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433642|ref|XP_004134606.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Cucumis sativus] gi|449505910|ref|XP_004162602.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Cucumis sativus]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/263 (78%), Positives = 233/263 (88%), Gaps = 6/263 (2%)

Query: 44  INSTKMGKSEITEE-----AEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR 98
           +NS KM  +EITEE     + EN++VK +KIFVAGA+GS+GK+IVEQLLA+GF VKAGVR
Sbjct: 47  LNSNKMEGNEITEETAQTQSGENLNVK-RKIFVAGASGSTGKKIVEQLLARGFEVKAGVR 105

Query: 99  DLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVD 158
           D+ KAKTTL   NP+LQIVKADVTEGSAKL+EAIG DSEAV+CATGF+ GWDLFAPWKVD
Sbjct: 106 DVSKAKTTLFPANPALQIVKADVTEGSAKLAEAIGSDSEAVICATGFRRGWDLFAPWKVD 165

Query: 159 NFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI 218
           N GTVNLVEACR  G+NRFILISSILVNGAAMGQILNPAYI LN  GL LIAKLQAE++I
Sbjct: 166 NLGTVNLVEACRDLGINRFILISSILVNGAAMGQILNPAYIILNALGLVLIAKLQAEKHI 225

Query: 219 RKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVV 278
           RKSGI+YTIIRPGGL+NEPPTGN++M  EDTLYEG+ISRD VAEVAVEALLH ++SYKVV
Sbjct: 226 RKSGIDYTIIRPGGLKNEPPTGNLVMAPEDTLYEGSISRDLVAEVAVEALLHSQASYKVV 285

Query: 279 EIISRVDAPKRSYEDLFGSIKQR 301
           EI+SR DAPKRSYEDLFGS+KQ 
Sbjct: 286 EIVSRDDAPKRSYEDLFGSVKQH 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823235|ref|XP_002879500.1| At2g34460/T31E10.20 [Arabidopsis lyrata subsp. lyrata] gi|297325339|gb|EFH55759.1| At2g34460/T31E10.20 [Arabidopsis lyrata subsp. lyrata]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/259 (74%), Positives = 234/259 (90%), Gaps = 5/259 (1%)

Query: 42  HSINSTKMGKSEITEEAEENVSVKQ-KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL 100
            S +S KM + E +EE +   +VK  KK+FVAGATG +GKRIVEQLL++GFAVKAGVRD+
Sbjct: 29  RSFSSIKMERGEASEEKD---AVKTTKKVFVAGATGKTGKRIVEQLLSRGFAVKAGVRDV 85

Query: 101 DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNF 160
           +KAKT+  KD+PSLQIV+ADVTEG  KL+EAIGDDS+AV+CATGF+PG+D+F PWKVDNF
Sbjct: 86  EKAKTSF-KDDPSLQIVRADVTEGPDKLAEAIGDDSQAVICATGFRPGFDIFTPWKVDNF 144

Query: 161 GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK 220
           GTVNLV+ACRK+GV +F+LISSILVNGAAMGQILNPAYIFLN+FGLTL+AKLQAE+YIR+
Sbjct: 145 GTVNLVDACRKQGVEKFVLISSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRR 204

Query: 221 SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEI 280
           SGINYTI+RPGGL+N+PPTGN++ME EDTLYEG+ISRD VAEVAVEALL  ESS+KVVEI
Sbjct: 205 SGINYTIVRPGGLKNDPPTGNVVMEPEDTLYEGSISRDLVAEVAVEALLQEESSFKVVEI 264

Query: 281 ISRVDAPKRSYEDLFGSIK 299
           ++R +APKRSY+DLF S+K
Sbjct: 265 VARAEAPKRSYKDLFASVK 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686068|ref|NP_565789.2| NAD(P)-binding Rossmann-fold-containing protein [Arabidopsis thaliana] gi|75151867|sp|Q8H124.1|Y2446_ARATH RecName: Full=Uncharacterized protein At2g34460, chloroplastic; Flags: Precursor gi|24030209|gb|AAN41284.1| unknown protein [Arabidopsis thaliana] gi|330253883|gb|AEC08977.1| NAD(P)-binding Rossmann-fold-containing protein [Arabidopsis thaliana]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/299 (66%), Positives = 243/299 (81%), Gaps = 21/299 (7%)

Query: 1   MATPLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGKSEITEEAEE 60
           MAT L+LR+   +    S+       T  K F          S  S KM      E+ E 
Sbjct: 1   MATSLLLRHSSAVFFSQSS-----FFTKNKSF---------RSFTSIKM------EKGEA 40

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKAD 120
             +VK KK+FVAGATG +GKRIVEQLL++GFAVKAGVRD++KAKT+  KD+PSLQIV+AD
Sbjct: 41  ENAVKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSF-KDDPSLQIVRAD 99

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           VTEG  KL+E IGDDS+AV+CATGF+PG+D+F PWKVDNFGTVNLV+ACRK+GV +F+L+
Sbjct: 100 VTEGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLV 159

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
           SSILVNGAAMGQILNPAY+FLN+FGLTL+AKLQAE+YI+KSGINYTI+RPGGL+N+PPTG
Sbjct: 160 SSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTG 219

Query: 241 NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIK 299
           N++ME EDTLYEG+ISRD VAEVAVEALL  ESS+KVVEI++R +APKRSY+DLF S+K
Sbjct: 220 NVVMEPEDTLYEGSISRDLVAEVAVEALLQEESSFKVVEIVARAEAPKRSYKDLFASVK 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2040854	280	AT2G34460 [Arabidopsis thalian	0.867	0.932	0.730	6.2e-101
TAIR|locus:2087901	641	Tic62 "translocon at the inner	0.877	0.411	0.326	3.4e-28
UNIPROTKB|Q71X34	209	LMOf2365_2365 "Putative unchar	0.684	0.985	0.314	6.7e-17
SGD|S000004696	227	YMR090W "Putative protein of u	0.644	0.854	0.305	3.7e-16
TAIR|locus:2040716	325	AT2G37660 [Arabidopsis thalian	0.727	0.673	0.283	2.6e-13
TAIR|locus:2185228	253	AT5G02240 [Arabidopsis thalian	0.734	0.873	0.279	1.2e-11
TAIR|locus:2015651	598	HCF173 "high chlorophyll fluor	0.312	0.157	0.356	9.2e-10
TAIR|locus:2180019	417	PCB2 "PALE-GREEN AND CHLOROPHY	0.578	0.417	0.308	4.5e-08
UNIPROTKB|K7GMD9	215	NSDHL "Uncharacterized protein	0.418	0.586	0.316	1.6e-07
UNIPROTKB|Q880S2	218	PSPTO_3079 "Uncharacterized pr	0.661	0.912	0.276	2.5e-07

TAIR|locus:2040854 AT2G34460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 198/271 (73%), Positives = 237/271 (87%)

Query:    32 FSVST--TKTWS-HSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLA 88
             FS S+  TK  S  S  S KM K E      EN +VK KK+FVAGATG +GKRIVEQLL+
Sbjct:    15 FSQSSFFTKNKSFRSFTSIKMEKGEA-----EN-AVKTKKVFVAGATGQTGKRIVEQLLS 68

Query:    89 KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG 148
             +GFAVKAGVRD++KAKT+  KD+PSLQIV+ADVTEG  KL+E IGDDS+AV+CATGF+PG
Sbjct:    69 RGFAVKAGVRDVEKAKTSF-KDDPSLQIVRADVTEGPDKLAEVIGDDSQAVICATGFRPG 127

Query:   149 WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL 208
             +D+F PWKVDNFGTVNLV+ACRK+GV +F+L+SSILVNGAAMGQILNPAY+FLN+FGLTL
Sbjct:   128 FDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTL 187

Query:   209 IAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEAL 268
             +AKLQAE+YI+KSGINYTI+RPGGL+N+PPTGN++ME EDTLYEG+ISRD VAEVAVEAL
Sbjct:   188 VAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPEDTLYEGSISRDLVAEVAVEAL 247

Query:   269 LHPESSYKVVEIISRVDAPKRSYEDLFGSIK 299
             L  ESS+KVVEI++R +APKRSY+DLF S+K
Sbjct:   248 LQEESSFKVVEIVARAEAPKRSYKDLFASVK 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2087901 Tic62 "translocon at the inner envelope membrane of chloroplasts 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 3.4e-28, P = 3.4e-28
 Identities = 97/297 (32%), Positives = 156/297 (52%)

Query:    30 KHFSVS-TTKTWSHSINSTK--MGKSEITEEAEENVSVKQKK-IFVAGATGSSGKRIVEQ 85
             K+ SVS  ++++  S+ ++      S +TE +  N++ K++  +FVAGATG  G R V +
Sbjct:    41 KNHSVSGKSRSFDLSLRASGPIRASSVVTEASPTNLNSKEEDLVFVAGATGKVGSRTVRE 100

Query:    86 LLAKGFAVKAGVRDLDKAKTTLS--KD----------NP--SLQIVKADVTEGSAKLSEA 131
             LL  GF V+AGVR   +A + +   K+           P   L+IV+ D+ E    +  A
Sbjct:   101 LLKLGFRVRAGVRSAQRAGSLVQSVKEMKLQNTDEGTQPVEKLEIVECDL-EKKDSIQPA 159

Query:   132 IGDDSEAVVCATGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA 189
             +G+ S  ++C  G       D+  P+++D   T NLV+A     VN FIL++S+  N   
Sbjct:   160 LGNAS-VIICCIGASEKEISDITGPYRIDYLATKNLVDAATSAKVNNFILVTSLGTNKFG 218

Query:   190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPP----TGNIIME 245
                   PA I LN+F   L  K +AE+ + +SG+NY I+RPGG+         T N+ + 
Sbjct:   219 F-----PAAI-LNLFWGVLCWKRKAEEALIESGLNYAIVRPGGMERPTDAYKETHNLTLA 272

Query:   246 TEDTLYEGTISRDQVAEVAVEALLHPESSY-KVVEIISRVDAPKRSYEDLFGSIKQR 301
              +DTL+ G +S  QVAE+      +P+ S+ K+VE+++   AP    E L   I  +
Sbjct:   273 LDDTLFGGQVSNLQVAELLACMAKNPQLSFSKIVEVVAETTAPLTPIEKLLEKIPSK 329

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

UNIPROTKB|Q71X34 LMOf2365_2365 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 71/226 (31%), Positives = 109/226 (48%)

Query:    69 IFVAGATGSSGKRIVEQL-LAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
             + V GA G  G+ +VE+L + KGF V+A VR   KA+     +    + + AD+ +    
Sbjct:     3 VLVIGANGKIGRLLVEKLAMEKGFFVRAMVR---KAEQVSELEKLGAKPIIADLKKD--- 56

Query:   128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
                A  D+ EAV+   G            +D  G +  +E  +++GV RFI++SS   + 
Sbjct:    57 FHYAY-DEIEAVIFTAGSGGHTPASETINIDQNGAIKAIETAKEKGVRRFIIVSSYGADN 115

Query:   188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETE 247
                G    P  +        L AK  A++ +++SG++YTI+RP GL ++P TG I   +E
Sbjct:   116 PENG----PESLIHY-----LKAKQAADEELKRSGLDYTIVRPVGLSDDPATGKIAEVSE 166

Query:   248 DTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYED 293
                   TI R  VA+   EAL    S YK   I S  D P + + D
Sbjct:   167 KPTT--TIPRADVADFISEALSEKSSFYKTYTIESG-DTPIKHFFD 209

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000004696 YMR090W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 67/219 (30%), Positives = 112/219 (51%)

Query:    68 KIFVAGATGSSGKRIVEQLLAK-GFAVK-AGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
             K+ V GA+G  G+ ++ QL A   F+   A VR  D+      K+   +     D+   S
Sbjct:     5 KVAVVGASGKVGRLLINQLKANDSFSTPLAIVRTQDQVN--YFKNEVGVDASLTDIENAS 62

Query:   126 -AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              +++++AI    +AVV + G   G  +   + VD  G + +VEAC K G+ RF+++S++ 
Sbjct:    63 VSEITDAI-KAYDAVVFSAG-AGGKGMERIFTVDLDGCIKVVEACEKAGIKRFVVVSALK 120

Query:   185 VNGAAMGQILNPAYIFLNVFGLT--LIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNI 242
                            + N+ GL    IAK  A++ +R S ++YTI++PG L     TG  
Sbjct:   121 AEDRDF---------WYNIKGLREYYIAKRSADREVRNSNLDYTILQPGSLELNKGTG-- 169

Query:   243 IMETEDTLYEG-----TISRDQVAEVAVEALLHPESSYK 276
             +++  D L E      +I+R+ VA   VE+LLHP ++ K
Sbjct:   170 LLQPLDKLEEKASVNYSINREDVASFIVESLLHPNATVK 208

GO:0003674 "molecular_function" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2040716 AT2G37660 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 72/254 (28%), Positives = 128/254 (50%)

Query:    69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
             + V GA G +G+ + ++L  +     A  R L + K +  K N   ++   D+ + +A +
Sbjct:    79 VLVTGAGGRTGQIVYKKLKERSEQFVA--RGLVRTKESKEKINGEDEVFIGDIRD-TASI 135

Query:   129 SEAIGDDSEAVVCATG----FQPGWD---------LFA----PWKVDNFGTVNLVEACRK 171
             + A+ +  +A+V  T      +PG+D          F     P +VD  G  N ++A + 
Sbjct:   136 APAV-EGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKA 194

Query:   172 RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
              GV + +L+ S+   G  +   LN +    N+    L+ K +AEQY+  SGI YTIIR G
Sbjct:   195 AGVKQIVLVGSM--GGTNINHPLN-SIGNANI----LVWKRKAEQYLADSGIPYTIIRAG 247

Query:   232 GLRNEPP-TGNIIMETEDTLYEG---TISRDQVAEVAVEALLHPESSYKVVEIISRVDA- 286
             GL+++      +++  +D L E    TI+R  VAEV V+AL   E+ +K +++ S+ +  
Sbjct:   248 GLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGT 307

Query:   287 --PKRSYEDLFGSI 298
               P + ++ LF  +
Sbjct:   308 GTPTKDFKALFTQV 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

TAIR|locus:2185228 AT5G02240 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 72/258 (27%), Positives = 124/258 (48%)

Query:    69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
             + V GA+G +G+ IV + L +G + K   + L ++     K      +   D+T+  + +
Sbjct:     7 VLVTGASGRTGQ-IVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADS-I 63

Query:   129 SEAI-GDDSEAVVCAT--GFQPGWD---------LFA----PWKVDNFGTVNLVEACRKR 172
             + A  G D+  ++ +     +PG+D         +F     P +VD  G  N ++A +  
Sbjct:    64 NPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA 123

Query:   173 GVNRFILISSILVNGAAMGQILNPAYIFLNVFGL--TLIAKLQAEQYIRKSGINYTIIRP 230
             GV   +++ S       MG   NP +  LN  G    L+ K +AEQY+  SG  YTIIR 
Sbjct:   124 GVKHIVVVGS-------MGGT-NPDHP-LNKLGNGNILVWKRKAEQYLADSGTPYTIIRA 174

Query:   231 GGLRN-EPPTGNIIMETEDTLYEG---TISRDQVAEVAVEALLHPESSYKVVEIISRVDA 286
             GGL + E     +++  +D L +    T+ R  VAEV ++ALL  E+  K  ++ S+ + 
Sbjct:   175 GGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEG 234

Query:   287 ---PKRSYEDLFGSIKQR 301
                P + ++ LF  +  R
Sbjct:   235 TSTPTKDFKALFSQVTSR 252

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2015651 HCF173 "high chlorophyll fluorescence phenotype 173" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
 Identities = 36/101 (35%), Positives = 52/101 (51%)

Query:    69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
             + V GAT   G+ +V +L+ +G+ VKA VR  D+    +S    S+ IV  DV E S  L
Sbjct:   165 VLVVGATSRIGRIVVRKLMLRGYTVKALVRKQDEE--VMSMLPRSVDIVVGDVGEPST-L 221

Query:   129 SEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEA 168
               A+   S+ + CAT       DL    +VD+ G  NL +A
Sbjct:   222 KSAVESCSKIIYCATARSTITADLT---RVDHLGVYNLTKA 259

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006413 "translational initiation" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2180019 PCB2 "PALE-GREEN AND CHLOROPHYLL B REDUCED 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 61/198 (30%), Positives = 92/198 (46%)

Query:    44 INSTKMGKSEI-TEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAV------KAG 96
             I+S   G SEI T  +  N S K   + V G+TG  G+ +V++++ +GF V      K+G
Sbjct:    60 ISSLDSGISEIATSPSFRNKSPKDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAREKSG 119

Query:    97 VRDLDKAKTTLSKDNPSLQIVKADVTEGSA--KLSEAIGDDSEAVVCATGFQPGWDLFAP 154
             +R  +  + TL K      +  +DVTE     K  E +G   + VV     + G  +   
Sbjct:   120 IRGKNDKEETL-KQLQGANVCFSDVTELDVLEKSIENLGFGVDVVVSCLASRNG-GIKDS 177

Query:   155 WKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ- 213
             WK+D   T N + A +K G   F+L+S+I V          P   F     L   A+L  
Sbjct:   178 WKIDYEATKNSLVAGKKFGAKHFVLLSAICVQ--------KPLLEFQRA-KLKFEAELMD 228

Query:   214 -AEQYIRKSGINYTIIRP 230
              AEQ  + S   Y+I+RP
Sbjct:   229 LAEQ--QDSSFTYSIVRP 244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP;TAS

GO:0051744 "3,8-divinyl protochlorophyllide a 8-vinyl reductase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|K7GMD9 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    51 KSEITE-EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK 109
             K ++T+    E++  K +K  V G +G  G+ +VEQLL +G+AV       DK +     
Sbjct:    10 KDQVTQTHLTEDIP-KDRKCTVIGGSGFLGQHMVEQLLERGYAVNV----FDKRQ---GF 61

Query:   110 DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEAC 169
             DNP +Q    D+      L  A+   S    CA+      +    ++V+  GT N++E C
Sbjct:    62 DNPRVQFFLGDLCN-QQDLYPALKGVSTVFHCASPAPSSNNKELFYRVNYIGTKNVIETC 120

Query:   170 RKRGVNRFILISSILV 185
             R+ GV + IL SS  V
Sbjct:   121 REAGVQKLILTSSASV 136

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q880S2 PSPTO_3079 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 137 (53.3 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 59/213 (27%), Positives = 97/213 (45%)

Query:    68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
             ++FV GA G  G+R++++L   G  V A  R   + ++ L K   +L ++   V   +A 
Sbjct:     3 RVFVIGAAGKVGQRLIKKLGDGGHEVIALHRK--EEQSVLIKAAGALPLLANLVEMDAAA 60

Query:   128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
             LS A+   S+ VV   G   G  +     +D  G    V A    GV RF+L+S+     
Sbjct:    61 LSSAMAG-SDVVVFTAG-AGGAGIELTNAIDGEGLKTSVAAAELAGVRRFLLVSAF--PE 116

Query:   188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETE 247
             AA G   +    F N   +    K  A+  +  S +++ I+RPG L +   +G +     
Sbjct:   117 AARGTDTSAG--FENYMRV----KKHADVCLASSELDWVILRPGTLVDSAGSGQV--RAG 168

Query:   248 DTLYEGTISRDQVAEVAVEALLHPESSYKVVEI 280
               +  G I RD VA      +  PE S +++E+
Sbjct:   169 LAIPYGDIPRDDVAAFLAALVDQPEISRQIIEL 201

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H124	Y2446_ARATH	No assigned EC number	0.6688	0.9235	0.9928	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
PLN00141	251	PLN00141, PLN00141, Tic62-NAD(P)-related group II	1e-169
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	2e-54
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	5e-36
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	3e-35
cd05244	207	cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu	1e-29
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	3e-20
cd05269	272	cd05269, TMR_SDR_a, triphenylmethane reductase (TM	2e-18
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	1e-17
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	3e-17
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	5e-16
cd08946	200	cd08946, SDR_e, extended (e) SDRs	9e-15
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	6e-14
pfam05368	232	pfam05368, NmrA, NmrA-like family	3e-13
PLN02657	390	PLN02657, PLN02657, 3,8-divinyl protochlorophyllid	3e-13
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	7e-13
cd05271	273	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub	7e-12
cd05251	242	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional	1e-11
cd05231	259	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript	1e-10
CHL00194	317	CHL00194, ycf39, Ycf39; Provisional	2e-10
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	1e-09
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	1e-09
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	1e-08
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	2e-08
cd05267	203	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	2e-08
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	3e-08
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	4e-08
cd05265	250	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	5e-08
cd05259	282	cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe	6e-08
COG1091	281	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C	7e-08
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	1e-07
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	2e-07
cd08957	307	cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic	2e-07
cd05250	214	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical	5e-07
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	1e-06
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	1e-06
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	2e-06
COG2910	211	COG2910, COG2910, Putative NADH-flavin reductase [	2e-06
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	3e-06
cd05240	306	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase	5e-06
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	6e-06
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	7e-06
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	9e-06
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	1e-05
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	1e-05
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	1e-05
PLN02986	322	PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase	1e-05
pfam04321	284	pfam04321, RmlD_sub_bind, RmlD substrate binding d	2e-05
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	3e-05
PLN02896	353	PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase	3e-05
cd05238	305	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n	4e-05
TIGR03649	285	TIGR03649, ergot_EASG, ergot alkaloid biosynthesis	4e-05
cd05237	287	cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l	5e-05
pfam02719	280	pfam02719, Polysacc_synt_2, Polysaccharide biosynt	5e-05
cd05266	251	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	5e-05
cd05254	280	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4	6e-05
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	7e-05
PLN02662	322	PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase	8e-05
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	1e-04
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	1e-04
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-04
PLN02650	351	PLN02650, PLN02650, dihydroflavonol-4-reductase	4e-04
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	6e-04
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	6e-04
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	7e-04
cd08947	224	cd08947, NmrA_TMR_like_SDR_a, NmrA (a transcriptio	9e-04
PLN02989	325	PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase	0.001
cd05253	332	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera	0.001
cd05235	290	cd05235, SDR_e1, extended (e) SDRs, subgroup 1	0.001
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	0.001
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	0.002
PLN00198	338	PLN00198, PLN00198, anthocyanidin reductase; Provi	0.002
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	0.003
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	0.003
pfam08659	181	pfam08659, KR, KR domain	0.004
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	0.004

>gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional

 Score =  468 bits (1207), Expect = e-169
 Identities = 204/254 (80%), Positives = 228/254 (89%), Gaps = 3/254 (1%)

Query: 48  KMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL 107
            M  +E +EE  ENV  K K +FVAGATG +GKRIVEQLLAKGFAVKAGVRD+DKAKT+L
Sbjct: 1   TMEGAEASEEDAENV--KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL 58

Query: 108 SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVE 167
              +PSLQIV+ADVTEGS KL EAIGDDS+AV+CATGF+  +D FAPWKVDNFGTVNLVE
Sbjct: 59  -PQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGFRRSFDPFAPWKVDNFGTVNLVE 117

Query: 168 ACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTI 227
           ACRK GV RFIL+SSILVNGAAMGQILNPAYIFLN+FGLTL+AKLQAE+YIRKSGINYTI
Sbjct: 118 ACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTI 177

Query: 228 IRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAP 287
           +RPGGL N+PPTGNI+ME EDTLYEG+ISRDQVAEVAVEALL PESSYKVVEI++R DAP
Sbjct: 178 VRPGGLTNDPPTGNIVMEPEDTLYEGSISRDQVAEVAVEALLCPESSYKVVEIVARADAP 237

Query: 288 KRSYEDLFGSIKQR 301
           KRSY+DLF SIKQ+
Sbjct: 238 KRSYKDLFASIKQK 251

Length = 251

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score =  175 bits (446), Expect = 2e-54
 Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 16/217 (7%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           K+ V GATG  G+ +V +LL +G+ V+A VRD  +A+     +    ++V  D+T+  + 
Sbjct: 1   KVLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAE---KLEAAGAEVVVGDLTDAES- 56

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
              A  +  +AV+ A G            VD  G +NL++A +K GV RF+L+SSI    
Sbjct: 57  -LAAALEGIDAVISAAGSGGK-GGPRTEAVDYDGNINLIDAAKKAGVKRFVLVSSI--GA 112

Query: 188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPP-TGNIIMET 246
                        L   G  L AK +AE Y+R SG++YTI+RPGGL ++P  TG +++  
Sbjct: 113 DKPSH-------PLEALGPYLDAKRKAEDYLRASGLDYTIVRPGGLTDDPAGTGRVVLGG 165

Query: 247 EDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISR 283
           + T  +G ISR  VAEV  EAL  P +  K  E+   
Sbjct: 166 DGTRLDGPISRADVAEVLAEALDTPAAIGKTFELGGG 202

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score =  127 bits (321), Expect = 5e-36
 Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 24/203 (11%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG +G+R+V++LLA+G  V A  R+  KA        P +  V+ D+ + +  L
Sbjct: 1   IAVIGATGKTGRRLVKELLARGHQVTALSRNPSKA------PAPGVTPVQKDLFDLAD-L 53

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS--ILVN 186
           +EA+    +AVV A G             D+ G  +L++A  + GV R +++S+  +  +
Sbjct: 54  AEAL-AGVDAVVDAFG---------ARPDDSDGVKHLLDAAARAGVRRIVVVSAAGLYRD 103

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMET 246
                ++ +       +F     AK  AE+ +R SG+++TI+RPG L +E      I   
Sbjct: 104 EPGTFRLDDA-----PLFPPYARAKAAAEELLRASGLDWTIVRPGALFDEEGETYEIGTE 158

Query: 247 EDTLYEGTISRDQVAEVAVEALL 269
            D   E +ISR  VA   ++ L 
Sbjct: 159 GDPAGESSISRADVAAALLDELE 181

Length = 182

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score =  133 bits (336), Expect = 3e-35
 Identities = 101/319 (31%), Positives = 153/319 (47%), Gaps = 35/319 (10%)

Query: 4   PLILRNCPTLCTLNSNQPPLRTLTLTKHFSVSTTKTWSHSINSTKMGK--SEITEEAEEN 61
             + +           Q  LR    +KH      ++      ++   K  S   E   + 
Sbjct: 16  TSLTKCGFIEKPFLHGQL-LRFPGFSKHPHSRKLRSLDIKAQASGATKFSSAAIEAIPKE 74

Query: 62  VSVKQKKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT------TLSKDNPS- 113
           +  K + + FVAGATG  G R V +LL  GF V+AGVR   +A++       +  D    
Sbjct: 75  LDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGT 134

Query: 114 -----LQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLV 166
                L+IV+ D+ E   ++  A+G+ S  V+C  G      +D+  P+++D   T NLV
Sbjct: 135 QPVEKLEIVECDL-EKPDQIGPALGNAS-VVICCIGASEKEVFDVTGPYRIDYLATKNLV 192

Query: 167 EACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT 226
           +A     VN FIL++S+  N     ++  PA I LN+F   L  K +AE+ +  SG+ YT
Sbjct: 193 DAATVAKVNHFILVTSLGTN-----KVGFPAAI-LNLFWGVLCWKRKAEEALIASGLPYT 246

Query: 227 IIRPGGLRNEPPTG------NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSY-KVVE 279
           I+RPGG+  E PT       N+ +  EDTL+ G +S  QVAE+      +   SY KVVE
Sbjct: 247 IVRPGGM--ERPTDAYKETHNLTLSEEDTLFGGQVSNLQVAELMACMAKNRRLSYCKVVE 304

Query: 280 IISRVDAPKRSYEDLFGSI 298
           +I+   AP    E+L   I
Sbjct: 305 VIAETTAPLTPMEELLAKI 323

Length = 576

>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs

 Score =  111 bits (280), Expect = 1e-29
 Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 12/216 (5%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KI + GATG +G  IV + LA+G  V A VRD       L  ++  L++V+ DV +    
Sbjct: 1   KIAIIGATGRTGSAIVREALARGHEVTALVRD----PAKLPAEHEKLKVVQGDVLD-LED 55

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
           + EA+ +  +AV+ A       DL         GT N+V A +  GV R I++       
Sbjct: 56  VKEAL-EGQDAVISA--LGTRNDLSPTTLHSE-GTRNIVSAMKAAGVKRLIVVGGAGSLD 111

Query: 188 AAMGQILNPAYI-FLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMET 246
                 L    + F            +  + +R+SG+++T +RP  L +   TG      
Sbjct: 112 DRPKVTLVLDTLLFPPALRRVAEDHARMLKVLRESGLDWTAVRPPALFDGGATGGYYRVE 171

Query: 247 EDTLYEG--TISRDQVAEVAVEALLHPESSYKVVEI 280
                +G   ISR  +A   ++ L  PE   K   I
Sbjct: 172 LLVDAKGGSRISRADLAIFMLDELETPEHVRKRPTI 207

Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 88.5 bits (219), Expect = 3e-20
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 15/177 (8%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            +I V G  G  G  +VE+LLA G  V+   R  D            ++ V  D+T+   
Sbjct: 1   MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP----LLSGVEFVVLDLTDRDL 56

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNF-----GTVNLVEACRKRGVNRFILIS 181
            + E      +AV+         D  A    +       GT+NL+EA R  GV RF+  S
Sbjct: 57  -VDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFAS 115

Query: 182 SILVN-GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI----RKSGINYTIIRPGGL 233
           S+ V  G      ++             ++KL AEQ +    R  G+   I+RP  +
Sbjct: 116 SVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNV 172

Length = 314

>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 59/223 (26%), Positives = 90/223 (40%), Gaps = 42/223 (18%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG  G  +VE LLAK  +V A VR+ +KAK   +     +++ + D  +    L
Sbjct: 1   ILVTGATGKLGTAVVELLLAKVASVVALVRNPEKAKAFAADG---VEVRQGDYDD-PETL 56

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
             A  +  + ++         DL     +      N ++A ++ GV   + +S+    GA
Sbjct: 57  ERAF-EGVDRLL----LISPSDLEDR--IQQHK--NFIDAAKQAGVKHIVYLSAS---GA 104

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG----GLRNEPPTGNIIM 244
                   A                 E+Y+  SGI YTI+RPG     L    P+     
Sbjct: 105 DEDSPFLLA-----------RDHGATEKYLEASGIPYTILRPGWFMDNLLEFLPSIL--- 150

Query: 245 ETEDTLY----EGT---ISRDQVAEVAVEALLHPESSYKVVEI 280
             E T+Y    +G    + R  +AE A  AL  P    KV  +
Sbjct: 151 -EEGTIYGPAGDGKVAFVDRRDIAEAAAAALTEPGHEGKVYNL 192

TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I + GATG  G+ +  +LL +G  V   VR+  +       D   + +V+ D+ +    L
Sbjct: 1   ILILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKE---DQEPVAVVEGDLRD-LDSL 56

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
           S+A+    + V+   G     D     +VD  GT N++EA ++ GV  FI ISS+   G 
Sbjct: 57  SDAV-QGVDVVIHLAG--APRDTRDFCEVDVEGTRNVLEAAKEAGVKHFIFISSLGAYGD 113

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
              +                  K + E  +R++ + YTI+RPG +
Sbjct: 114 LHEETEPSPSSPYLAV------KAKTEAVLREASLPYTIVRPGVI 152

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG  G  +V  LLA+G+ V+A VR    A      D   +++V+ D+T+ ++ L
Sbjct: 1   ILVTGATGFLGSNLVRALLAQGYRVRALVRSGSDAVLL---DGLPVEVVEGDLTDAAS-L 56

Query: 129 SEAIGDDSEAVVCATGF----QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
           + A+    + V     F             ++ +  GT N+++A  + GV R +  SSI 
Sbjct: 57  AAAM-KGCDRVFHLAAFTSLWAKDRKEL--YRTNVEGTRNVLDAALEAGVRRVVHTSSIA 113

Query: 185 VNGAAMGQILN-----PAYIFLNVFGLTLIAKLQAEQYIRK---SGINYTIIRPG 231
             G      ++         F N +  +   KL AE  + +    G++  I+ P 
Sbjct: 114 ALGGPPDGRIDETTPWNERPFPNDYYRS---KLLAELEVLEAAAEGLDVVIVNPS 165

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 76.3 bits (188), Expect = 5e-16
 Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 49/272 (18%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-----TTLSKDNPSLQIVKADVTE 123
           +FV G TG  G+ +V++LL  GF V   VR     +          +   +++++ D+T+
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQ 60

Query: 124 GSAKLSEAIGDDSEAVV--------CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN 175
            +  LS A    S  +         CA  +         W+ +  GT +++E   +  + 
Sbjct: 61  PNLGLSAA---ASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVLELAARLDIQ 117

Query: 176 RFILISSILVNGAAMGQI----LNPAYIFLNVFGLTLIAKLQAEQYIRKSG--INYTIIR 229
           RF  +S+  V G   G I    LNP   F N +  +   K +AEQ +R +   I  T+ R
Sbjct: 118 RFHYVSTAYVAGNREGNIRETELNPGQNFKNPYEQS---KAEAEQLVRAAATQIPLTVYR 174

Query: 230 PGGLRNEPPTGNIIMETEDTLYE--------GT--------------ISRDQVAEVAVEA 267
           P  +  +  TG I  E  D LYE        G               +  D VA+  V  
Sbjct: 175 PSIVVGDSKTGRI--EKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVDYVADAIVYL 232

Query: 268 LLHPESSYKVVEIISRVDAPKRSYEDLFGSIK 299
              PE++ ++  +        R   DLF S  
Sbjct: 233 SKKPEANGQIFHLTDPTPQTLREIADLFKSAF 264

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 50/173 (28%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V G  G  G  +V +LL +G  V                                   
Sbjct: 1   ILVTGGAGFIGSHLVRRLLERGHEVV---------------------------------- 26

Query: 129 SEAIGDDSEAVV---CATGFQPGWDLFAPWKVDNF-GTVNLVEACRKRGVNRFILISSIL 184
              + D  + VV      G    WD        N  GT+NL+EA RK GV RF+  SS  
Sbjct: 27  ---VIDRLDVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSAS 83

Query: 185 VNGAAMGQILNPAYIF--LNVFGLTLIAKLQAEQYIR----KSGINYTIIRPG 231
           V G+  G           L+ +G++   KL AE  +R      G+   I+R  
Sbjct: 84  VYGSPEGLPEEEETPPRPLSPYGVS---KLAAEHLLRSYGESYGLPVVILRLA 133

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 69.2 bits (170), Expect = 6e-14
 Identities = 59/235 (25%), Positives = 92/235 (39%), Gaps = 37/235 (15%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V G TG  G  +V +LL +G+ V    R     + + S +   ++  + D+T+  A L
Sbjct: 1   ILVTGGTGFIGSHLVRRLLQEGYEVIVLGR----RRRSESLNTGRIRFHEGDLTDPDA-L 55

Query: 129 SEAIGDDS-EAVVCATGFQPGWDLFAP----WKVDNFGTVNLVEACRKRGVNRFILISSI 183
              + +   +AV+           F       + +  GT+ L+EA R+ GV RF+  SS 
Sbjct: 56  ERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVFASSS 115

Query: 184 LVNGAAMGQILNPAYIF--LNVFGLTLIAKLQAEQ----YIRKSGINYTIIRPG-----G 232
            V G      +        L+ +     AKL AE+    Y R  G+   I+R       G
Sbjct: 116 EVYGDVADPPITEDTPLGPLSPYA---AAKLAAERLVEAYARAYGLRAVILRLFNVYGPG 172

Query: 233 LRNEPPTG-------NIIMETEDTLY-EGTISRD-----QVAEVAVEALLHPESS 274
             +   T         I+      L  +GT  RD      VA   + AL HP+  
Sbjct: 173 NPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILLALEHPDGG 227

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 45/163 (27%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG  G  +V   L  G  V+A VRD         K     ++V+ D+ +    L
Sbjct: 1   ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGV-ELVEGDLDD-HESL 58

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
            EA+    + V   TGF          K        L +A ++ GV  FI  S       
Sbjct: 59  VEAL-KGVDVVFSVTGFWLS-KEIEDGK-------KLADAAKEAGVKHFIP-SEF----G 104

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
                 N     +  F     +K + E+YIR  GI YT +  G
Sbjct: 105 NDVDRSNGVEPAVPHFD----SKAEVERYIRALGIPYTFVYAG 143

NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232

>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 21/173 (12%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-----DKAKTTLSKDNPSLQIVKA 119
           K   + V GATG  GK +V +L+ +G+ V A  R+         K    K+ P  ++V  
Sbjct: 59  KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFG 118

Query: 120 DVTEGSA--KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRF 177
           DVT+  +  K+  + GD  + VV     + G    + WK+D   T N ++A R+ G   F
Sbjct: 119 DVTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDS-WKIDYQATKNSLDAGREVGAKHF 177

Query: 178 ILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRP 230
           +L+S+I V          P   F     L   A+LQA      S   Y+I+RP
Sbjct: 178 VLLSAICVQ--------KPLLEFQRA-KLKFEAELQALD----SDFTYSIVRP 217

Length = 390

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 67.2 bits (164), Expect = 7e-13
 Identities = 54/222 (24%), Positives = 81/222 (36%), Gaps = 31/222 (13%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            KI V GATG  G  +V +LLA+G  V+A VR+ + A          +++V  D+ +   
Sbjct: 1   MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAA----ALAGGVEVVLGDLRD--P 54

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
           K   A     + V+  +G   G D F    V     V   EA    GV   + +S     
Sbjct: 55  KSLVAGAKGVDGVLLISGLLDGSDAFR--AVQVTAVVRAAEAAGA-GVKHGVSLS----- 106

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL--RNEPPTGNIIM 244
                   +P+ +          AK   E  +R SGI YT +R                 
Sbjct: 107 -VLGADAASPSALA--------RAKAAVEAALRSSGIPYTTLRRAAFYLGAGAAFIEAAE 157

Query: 245 ETEDTLYE------GTISRDQVAEVAVEALLHPESSYKVVEI 280
                +          I+ D VAE    AL  P ++ +  E+
Sbjct: 158 AAGLPVIPRGIGRLSPIAVDDVAEALAAALDAPATAGRTYEL 199

Length = 275

>gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTLSKDNPSLQIVKADVTEGS 125
             + V GATG  G+ +V +L  +G  V    R      +  +  D   +  V+ D+ +  
Sbjct: 1   MVVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLLVMGDLGQVLFVEFDLRDD- 59

Query: 126 AKLSEAIGDDSEAVVCATG--FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
             + +A+ + S+ V+   G  ++     F    V   G   L +A ++ GV R I IS  
Sbjct: 60  ESIRKAL-EGSDVVINLVGRLYETKNFSF--EDVHVEGPERLAKAAKEAGVERLIHIS-- 114

Query: 184 LVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
                A+G   N    +       L +K + E+ +R++    TI+RP 
Sbjct: 115 -----ALGADANSPSKY-------LRSKAEGEEAVREAFPEATIVRPS 150

This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273

>gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 51/220 (23%), Positives = 80/220 (36%), Gaps = 39/220 (17%)

Query: 69  IFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           I V GATG  G  +V  LL   GF V+A  RD            P +++V+ D+ +  + 
Sbjct: 1   ILVFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAAKALAA-PGVEVVQGDLDDPES- 58

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNF--GTVNLVEACRKRGVNRFILISSILV 185
           L  A+      V   T F      +     D    G  N+V+A ++ GV  F+  SS + 
Sbjct: 59  LEAAL-KGVYGVFLVTDF------WEAGGEDEIAQGK-NVVDAAKRAGVQHFV-FSS-VP 108

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG---------GLRNE 236
           +     ++      F +        K + E+YIR SG+  TI+RP              +
Sbjct: 109 DVE---KLTLAVPHFDS--------KAEVEEYIRASGLPATILRPAFFMENFLTPPAPQK 157

Query: 237 PPTGNI---IMETEDTLYEGTISRDQVAEVAVEALLHPES 273
              G +   +    DT     I    +          P  
Sbjct: 158 MEDGTLTLVLPLDPDTKLPM-IDVADIGPAVAAIFKDPAK 196

NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242

>gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 54/217 (24%), Positives = 82/217 (37%), Gaps = 40/217 (18%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GATG  G ++   LL  G  V+A VR  ++A    ++     ++V  D+    A L
Sbjct: 1   ILVTGATGRIGSKVATTLLEAGRPVRALVRSDERAAALAAR---GAEVVVGDLD-DPAVL 56

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA 188
           + A+         A    P  D   P  V          A R+ GV R + +SS+   GA
Sbjct: 57  AAALAGVDAVFFLAPP-APTADAR-PGYVQ-AAEA-FASALREAGVKRVVNLSSV---GA 109

Query: 189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETED 248
                 +P+       GL     L  EQ +  +G+    +RP          N++ +   
Sbjct: 110 ---DPESPS-------GLIRGHWL-MEQVLNWAGLPVVHLRPAWFME-----NLLSQAPS 153

Query: 249 TLYEGT-------------ISRDQVAEVAVEALLHPE 272
               G              I+ D +A VA + LL PE
Sbjct: 154 IRKAGVLALPFPGDGRLPPIATDDIARVAAKLLLDPE 190

Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259

>gnl|CDD|177093 CHL00194, ycf39, Ycf39; Provisional

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 26/167 (15%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GATG+ G++IV Q L +G+ V+  VR+L KA          L+   A++  G   L
Sbjct: 3   LLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASF--------LKEWGAELVYGDLSL 54

Query: 129 SEAIGDDSE---AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            E +    +   A++ A+  +P  DL+   ++D  G + L+EA +   + RFI  S    
Sbjct: 55  PETLPPSFKGVTAIIDASTSRPS-DLYNAKQIDWDGKLALIEAAKAAKIKRFIFFS---- 109

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG 232
                  ILN A  +  +  + L  K   EQ ++KSGI YTI R  G
Sbjct: 110 -------ILN-AEQYPYIPLMKL--KSDIEQKLKKSGIPYTIFRLAG 146

Length = 317

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 63/251 (25%), Positives = 95/251 (37%), Gaps = 49/251 (19%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLSKD--NPSLQIVKADVT 122
            + V GATG     IVEQLL  G+ V+  VR L K+   K  L     N  L+ V  D  
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVIVDDL 60

Query: 123 EGSAKLSEAIGDDSEAVVCA-----TGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNR 176
                  EA+      +  A     TG     D+  P  V+  GT+N++EA +  G V R
Sbjct: 61  TAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDP-AVE--GTLNVLEAAKAAGSVKR 117

Query: 177 FILISSILVNGAAMGQILNPAYIF---------------LNVF-GLTLIAKLQAEQYIR- 219
            +L SS+           +P  +F               L+ +     +A+  A ++++ 
Sbjct: 118 VVLTSSVA--AVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEFVKE 175

Query: 220 -KSGINYTIIRPG------GLRNEPPTGN---------IIMETEDTLYEGTISRDQVAEV 263
            K       I PG       L +E  + N          +      L  G +    VA+ 
Sbjct: 176 NKPKFELITINPGYVLGPSLLADELNSSNELINKLLDGKLPAIPPNLPFGYVDVRDVADA 235

Query: 264 AVEALLHPESS 274
            V AL  PE++
Sbjct: 236 HVRALESPEAA 246

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA--KTTLSKDN-PSLQIVKADVTEGSAK 127
           V G +G  G+R+V+QLL +G      VR  D A     LS    P+++ +K D+T+ +  
Sbjct: 4   VTGGSGFFGERLVKQLLERG---GTYVRSFDIAPPGEALSAWQHPNIEFLKGDITDRND- 59

Query: 128 LSEAIGDDSEAVVCAT--GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
           + +A+         A         DL+  W+V+  GT N+++AC++ GV +F+  SS  V
Sbjct: 60  VEQALSGADCVFHTAAIVPLAGPRDLY--WEVNVGGTQNVLDACQRCGVQKFVYTSSSSV 117

Query: 186 NG 187
             
Sbjct: 118 IF 119

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 19/126 (15%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKADVT-EG 124
           V GA+G  G  +V++LL +G+ V+A VRD    K       L      L++ KAD+   G
Sbjct: 3   VTGASGFIGSWLVKRLLQRGYTVRATVRDPGDEKKVAHLLELEGAKERLKLFKADLLDYG 62

Query: 125 SAKLSEAIGDDSEAVVC-ATGFQPG-----WDLFAPWKVDNFGTVNLVEACRK-RGVNRF 177
           S     AI D  + V   A+           ++  P  V   GT+N++EAC K + V R 
Sbjct: 63  S--FDAAI-DGCDGVFHVASPVDFDSEDPEEEMIEP-AVK--GTLNVLEACAKAKSVKRV 116

Query: 178 ILISSI 183
           +  SS+
Sbjct: 117 VFTSSV 122

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 48/226 (21%), Positives = 73/226 (32%), Gaps = 16/226 (7%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE 123
             K  VAGA G  G  ++  LL     F        +  A+   +     + +       
Sbjct: 53  DPKSLVAGAKGVDGVLLISGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADA 112

Query: 124 GS-AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACR-------KRGVN 175
            S + L+ A     EA + ++G  P   L         G    +EA          RG+ 
Sbjct: 113 ASPSALARAKAA-VEAALRSSGI-PYTTLRRAAFYLGAGAA-FIEAAEAAGLPVIPRGIG 169

Query: 176 RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRN 235
           R   I+   V  A    +  PA          L            SG++YTI RP GL  
Sbjct: 170 RLSPIAVDDVAEALAAALDAPAT---AGRTYELAGPEALTLAELASGLDYTIGRPVGLIP 226

Query: 236 EPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEII 281
           E      +  +   L  G ++R  VA    E L    +    +  +
Sbjct: 227 EALAALTLALSGLGLLPGFVARALVAGDIGELLGDLAADSGKLSEL 272

Length = 275

>gnl|CDD|187577 cd05267, SDR_a6, atypical (a) SDRs, subgroup 6

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 21/208 (10%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
           KK+ + GA G   +     LL      +   +R+   A   L   +  + +V+ D    S
Sbjct: 1   KKVLILGANGEIAREATTMLLENSNVELTLFLRN---AHRLLHLKSARVTVVEGDALN-S 56

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
             L  A+    + V    G   G DL      D     N+V+A +  GV R I  +S+ +
Sbjct: 57  DDLKAAM-RGQDVVYANLG---GTDL------DQQ-AENVVQAMKAVGVKRLIWTTSLGI 105

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIME 245
                G+            G  L    ++   I  S ++YT++RP  L N     +  + 
Sbjct: 106 YDEVPGKF---GEWNKEFIGNYLAPYRKSAAVIENSDLDYTLLRPAWLTNN-DEIDYELT 161

Query: 246 TEDTLYEGT-ISRDQVAEVAVEALLHPE 272
            +   ++GT +SR  VA++  + + HP+
Sbjct: 162 PKGEAFKGTEVSRKSVADLITDIINHPD 189

These atypical SDR family members of unknown function have only a partial match to a prototypical glycine-rich NAD(P)-binding motif consensus, GXXG, which conserves part of the motif of extended SDR. Furthermore, they lack the characteristic active site residues of the SDRs. This subgroup is related to phenylcoumaran benzylic ether reductase, an NADPH-dependent aromatic alcohol reductase. One member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 35/180 (19%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           K+ V GA G  G+ +V++LL++G  V+  VR   +   + +  + P +            
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVLAELPDIDSFTDLF----- 55

Query: 127 KLSEAIGDDSEAVV-CA--------TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRF 177
                     +AVV  A         G  P  D     KV+   T  L  A  ++GV RF
Sbjct: 56  -------LGVDAVVHLAARVHVMNDQGADPLSDYR---KVNTELTRRLARAAARQGVKRF 105

Query: 178 ILISSILVNGAA-MGQILNPAYIFLNV--FGLTLIAKLQAEQYIRK----SGINYTIIRP 230
           + +SS+ VNG   +G   +          +G    +KL+AE+ + +     G+   I+RP
Sbjct: 106 VFLSSVKVNGEGTVGAPFDETDPPAPQDAYG---RSKLEAERALLELGASDGMEVVILRP 162

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 24/176 (13%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGS 125
           I V G  G  G  +V++LL +G  V   V +L   +    +   +N + + VK D+ + +
Sbjct: 2   ILVTGGAGFIGSHLVDRLLEEGNEVVV-VDNLSSGRRENIEPEFENKAFRFVKRDLLDTA 60

Query: 126 AKLSEAIGDD-----SEAVVCATGFQPGWDLFAPWKVDNF-GTVNLVEACRKRGVNRFIL 179
            K+++  GD      +   V      P  DL      +N   T N++EA R  GV R + 
Sbjct: 61  DKVAKKDGDTVFHLAANPDVRLGATDPDIDLE-----ENVLATYNVLEAMRANGVKRIVF 115

Query: 180 ISSILVNGAAMGQIL--NPAYIFLNVFGLTLIAKLQAEQYI----RKSGINYTIIR 229
            SS  V G A       +   + ++V+G    +KL AE  I       G    I R
Sbjct: 116 ASSSTVYGEAKVIPTPEDYPPLPISVYG---ASKLAAEALISAYAHLFGFQAWIFR 168

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 44/172 (25%), Positives = 65/172 (37%), Gaps = 25/172 (14%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            KI + G T   GK +VE+LLA G  V    R       T       ++ +  D  +  A
Sbjct: 1   MKILIIGGTRFIGKALVEELLAAGHDVTVFNR-----GRTKPDLPEGVEHIVGDRNDRDA 55

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
            L E +G +   VV           + P +V+       ++A + R V ++I ISS  V 
Sbjct: 56  -LEELLGGEDFDVVV------DTIAYTPRQVE-----RALDAFKGR-VKQYIFISSASVY 102

Query: 187 GAAMGQIL------NPAYIFLNVFGLTLIAKLQAEQY-IRKSGINYTIIRPG 231
                 I        P  + L+        K  AE   I  +   YTI+RP 
Sbjct: 103 LKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAAAFPYTIVRPP 154

Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250

>gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 49/219 (22%), Positives = 79/219 (36%), Gaps = 40/219 (18%)

Query: 68  KIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           KI +AGATG+ G  IV  LLA  GF V    R    +          +++V  D      
Sbjct: 1   KIAIAGATGTLGGPIVSALLASPGFTVTVLTRPSSTSSNEFQ--PSGVKVVPVDYAS-HE 57

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
            L  A+    +AV+ A G            + +   + L++A    GV RFI       +
Sbjct: 58  SLVAAL-KGVDAVISALGGAA---------IGDQ--LKLIDAAIAAGVKRFI------PS 99

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS--GINYTIIRPG-----GLRNEPPT 239
              +      A   L++F      K    +Y+R    G+ +T +  G      L      
Sbjct: 100 EFGVDYDRIGALPLLDLFD----EKRDVRRYLRAKNAGLPWTYVSTGMFLDYLLEPLFGV 155

Query: 240 GN------IIMETEDTLYEGTISRDQVAEVAVEALLHPE 272
            +       I    +T +  T + + +      AL HP+
Sbjct: 156 VDLANRTATIYGDGETKFAFT-TLEDIGRAVARALTHPD 193

PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 282

>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 44/178 (24%), Positives = 66/178 (37%), Gaps = 41/178 (23%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVR------DLDKAKTTLSKDNPSLQIVKADV 121
           KI + GA G  G  +   L    F V A  R      D D     + +  P + I  A  
Sbjct: 2   KILITGANGQLGTELRRAL-PGEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAY 60

Query: 122 TEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 181
           T     + +A  +   A                + V+  G  NL  A  + G  R + IS
Sbjct: 61  T----AVDKAESEPELA----------------FAVNATGAENLARAAAEVGA-RLVHIS 99

Query: 182 SILV-NGAAMGQ-----ILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
           +  V +G   G        NP    LNV+G +   KL  E+ +R +G  + I+R   +
Sbjct: 100 TDYVFDGEKGGPYKETDTPNP----LNVYGRS---KLAGEEAVRAAGPRHLILRTSWV 150

Length = 281

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 14/166 (8%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           K+FV GATG  G  +V +L+A G  V    R  D     L       Q+ + D+ +    
Sbjct: 2   KVFVTGATGFIGSAVVRELVAAGHEVVGLARS-DAGAAKLE--AAGAQVHRGDLEDLDIL 58

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLF-APWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
              A   +++AV+    F   +D F    +VD      L EA R  G    I  S I + 
Sbjct: 59  RKAAA--EADAVI-HLAFTHDFDNFAQACEVDRRAIEALGEALRGTGK-PLIYTSGIWLL 114

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS---GINYTIIR 229
           G   GQ  +           T  A+  +E    +    G+  +++R
Sbjct: 115 GPTGGQEEDEEAPD---DPPTPAARAVSEAAALELAERGVRASVVR 157

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 36/186 (19%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-LSKDNPSLQIVKA---DVTEGSA 126
           V G  G  G+ IV  LL +G      VR  D   +  L +D   LQ++     DVT+   
Sbjct: 2   VTGGGGFLGRHIVRLLLREG--ELQEVRVFDLRFSPELLEDFSKLQVITYIEGDVTD-KQ 58

Query: 127 KLSEAIGDDSEAVV---CATGFQPGWDLFAP------WKVDNFGTVNLVEACRKRGVNRF 177
            L  A+   S+ V+            D+F         KV+  GT N+++AC K GV   
Sbjct: 59  DLRRAL-QGSDVVIHTAAII------DVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVL 111

Query: 178 ILISSILVNGAAM-GQI-------LNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
           +  SS+ V G    GQ                + +  +   K  AE+ + K+  N + ++
Sbjct: 112 VYTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPES---KALAEKLVLKA--NGSTLK 166

Query: 230 PGGLRN 235
            GG   
Sbjct: 167 NGGRLY 172

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            K+ + G  G  G  ++E LL +G  V   + +    +     D+P+L +V+  + +  A
Sbjct: 1   MKVLITGGAGQIGSHLIEHLLERGHQV-VVIDNFATGRREHLPDHPNLTVVEGSIAD-KA 58

Query: 127 KLSEAIGDDS-EAVV-CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
            + +  GD   +AVV  A  ++   D +     +  G  N+V+A +K GV R I   + L
Sbjct: 59  LVDKLFGDFKPDAVVHTAAAYKDPDDWYEDTLTNVVGGANVVQAAKKAGVKRLIYFQTAL 118

Query: 185 VNGAAMGQILNPAYIFLN-----VFGLTLIAKLQAEQYIRKSGINYTIIR 229
             G  +  +  P  I L+           I+K   E Y+  SG+++   R
Sbjct: 119 CYG--LKPMQQP--IRLDHPRAPPGSSYAISKTAGEYYLELSGVDFVTFR 164

Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307

>gnl|CDD|187560 cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 47/184 (25%), Positives = 65/184 (35%), Gaps = 49/184 (26%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K   V GATG  GK ++ +LL   +   V A VR                   K    E 
Sbjct: 1   KTALVLGATGLVGKHLLRELLKSPYYSKVTAIVRR------------------KLTFPEA 42

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLF--------------APWKVDNFGTVNLVEACR 170
             KL + + D          FQ     F                 KVD+   + L +  +
Sbjct: 43  KEKLVQIVVDFERLDEYLEAFQNPDVGFCCLGTTRKKAGSQENFRKVDHDYVLKLAKLAK 102

Query: 171 KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTII-R 229
             GV  F+L+SS+   GA      +P   F     L L  K + E+ ++K G     I R
Sbjct: 103 AAGVQHFLLVSSL---GA------DPKSSF-----LYLKVKGEVERDLQKLGFERLTIFR 148

Query: 230 PGGL 233
           PG L
Sbjct: 149 PGLL 152

Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 214

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 25/197 (12%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            K+ V GATG  G  +V  LL +G  V+  VR     +     D   ++IV+ D+ + ++
Sbjct: 1   MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLD---VEIVEGDLRDPAS 57

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAP-----WKVDNFGTVNLVEACRKRGVNRFILIS 181
                 G  +   V A      + L+AP     +  +  GT NL+ A  + GV R +  S
Sbjct: 58  LRKAVAGCRALFHVAAD-----YRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTS 112

Query: 182 SILVNG-AAMGQILNPAY--IFLNVFGLTLIAKLQAEQ----YIRKSGINYTIIRPG--- 231
           S+   G    G   +        ++ G    +K  AEQ       + G+   I+ P    
Sbjct: 113 SVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPI 172

Query: 232 GLRN-EP-PTGNIIMET 246
           G R+ +P PTG II++ 
Sbjct: 173 GPRDIKPTPTGRIIVDF 189

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 34/182 (18%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           ++ + G  G  G  +V+ LL +G  V+      D++          +  +K D  E  A 
Sbjct: 1   RVLIVGGNGFIGSHLVDALLEEGPQVRV----FDRSIPPYELPLGGVDYIKGD-YENRAD 55

Query: 128 LSEAIGDDSEAV---VCAT-----GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
           L  A+    + V      T        P  D+      +   TV L+EAC   G+ + I 
Sbjct: 56  LESAL-VGIDTVIHLASTTNPATSNKNPILDIQT----NVAPTVQLLEACAAAGIGKIIF 110

Query: 180 ISSILVNGAAMGQILNPAY------IFLNVFGLTLIAKLQAEQYIR----KSGINYTIIR 229
            SS    G   G             + ++ +G++   KL  E+Y+R      G++YT++R
Sbjct: 111 ASS---GGTVYGVPEQLPISESDPTLPISSYGIS---KLAIEKYLRLYQYLYGLDYTVLR 164

Query: 230 PG 231
             
Sbjct: 165 IS 166

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 19/178 (10%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL--SKDNPSLQIVKADVTEGS 125
            + V GA G  G  + E+LL +G  V+A           L  +  +     +  DV    
Sbjct: 1   NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVR--D 58

Query: 126 AKLSEAIGDDSEAVV-CATGFQPGWDLFAPWKV---DNFGTVNLVEACRKRGVNRFILIS 181
           A   E +    + V   A      +   AP      + FGT+N++EA       R +  S
Sbjct: 59  ASEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTS 118

Query: 182 SILVNGAAMGQIL-----NPAYIFLNVFGLTLIAKLQAEQ----YIRKSGINYTIIRP 230
           +  V G    Q +     +P             +K  A++    Y R  G+  TIIRP
Sbjct: 119 TSEVYG--TAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRP 174

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 18/124 (14%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            KI + GA+G +G RI+++ L +G  V A VR  + +K    +    + I++ D+ + ++
Sbjct: 1   MKIAIIGASGKAGSRILKEALKRGHEVTAIVR--NASKLAARQG---VTILQKDIFDLTS 55

Query: 127 KLSEAIGDDSEAVVCATGF-QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
             S+  G D  AV+ A G      D      ++      L+EA +  GV R      ++V
Sbjct: 56  LASDLAGHD--AVISAFGAGASDNDELHSKSIE-----ALIEALKGAGVPRL-----LVV 103

Query: 186 NGAA 189
            GA 
Sbjct: 104 GGAG 107

Length = 211

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 71  VAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLS 129
           V G +G  G+ +VEQLL +G   V   V D+          +  +Q    D+T+    L 
Sbjct: 4   VVGGSGFLGRHLVEQLLRRGNPTVH--VFDIRPTFELDPSSSGRVQFHTGDLTD-PQDLE 60

Query: 130 EAIGDDSEAVVCATG---FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
           +A  +    VV  T         DL+  +KV+  GT N++EACRK GV + +  SS
Sbjct: 61  KAFNEKGPNVVFHTASPDHGSNDDLY--YKVNVQGTRNVIEACRKCGVKKLVYTSS 114

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)

Query: 69  IFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           I V GA G  G+ +  +L A      V      LD+ +   S   P ++ V+ D+     
Sbjct: 1   ILVTGAAGGLGRLLARRLAASPRVIGVDG----LDRRRPPGSP--PKVEYVRLDIR--DP 52

Query: 127 KLSEAIGD-DSEAVV-CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
             ++   + +++AVV  A    P  D     +++  GT N+++AC   GV R ++ SS+ 
Sbjct: 53  AAADVFREREADAVVHLAFILDPPRDGAERHRINVDGTQNVLDACAAAGVPRVVVTSSVA 112

Query: 185 VNGAAMGQILNPAYIFLN--VFGLTLIA----KLQAEQYI-----RKSGINYTIIRPG 231
           V GA      NPA +  +  + G    A    K + EQ +     R   +N T++RP 
Sbjct: 113 VYGAHPD---NPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTVLRPA 167

Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 17/145 (11%)

Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVT 122
           +K K + V GA    GK  VE LLA G   V A VRD   A   ++K    +  ++ DVT
Sbjct: 1   IKDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKYGDKVVPLRLDVT 60

Query: 123 E-GSAKLSEAIGDDSEAVVCATGFQPGWDLFAP---------WKVDNFGTVNLVEA---- 168
           +  S K + A   D + V+   G      L              V+ FG + L +A    
Sbjct: 61  DPESIKAAAAQAKDVDVVINNAGVLKPATLLEEGALEALKQEMDVNVFGLLRLAQAFAPV 120

Query: 169 CRKRGVNRFILISSI--LVNGAAMG 191
            +  G    + ++S+  L N  AMG
Sbjct: 121 LKANGGGAIVNLNSVASLKNFPAMG 145

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE 130
           V GA+G     +VEQLL +G+ V+A VRD  K K         L      +    A L++
Sbjct: 3   VTGASGFVASHVVEQLLERGYKVRATVRDPSKVK--KVNHLLDLDAKPGRLELAVADLTD 60

Query: 131 AIGDDSEAVVCATGFQPGWDL-FAPWKVDNF------GTVNLVEACRKRG-VNRFILISS 182
               D     CA  F     + F+    +        GT+N ++A      V RF+L SS
Sbjct: 61  EQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVKRFVLTSS 120

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 43/174 (24%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-LSKDNPSLQIVKADVT--EG 124
           ++ V G  G  G  +VE+LL +G  V   + +L   K   L +  P+++ ++ D+   E 
Sbjct: 1   RVLVTGGAGFIGSHLVERLLERGHEV-IVLDNLSTGKKENLPEVKPNVKFIEGDIRDDEL 59

Query: 125 SAKLSE---------AIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN 175
                E         A      ++       P  D     +V+  GT+NL+EA RK GV 
Sbjct: 60  VEFAFEGVDYVFHQAAQASVPRSIE-----DPIKDH----EVNVLGTLNLLEAARKAGVK 110

Query: 176 RFILISSILVNGAAMG----------QILNPAYIFLNVFGLTLIAKLQAEQYIR 219
           RF+  SS     +  G             NP    L+ + ++   K   E Y +
Sbjct: 111 RFVYASS----SSVYGDPPYLPKDEDHPPNP----LSPYAVS---KYAGELYCQ 153

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 46/177 (25%), Positives = 67/177 (37%), Gaps = 49/177 (27%)

Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE 123
           +  K + V G  GS G  +  Q+L              K     S+D   L ++  ++ E
Sbjct: 248 LTGKTVLVTGGGGSIGSELCRQILKFN----------PKEIILFSRDEYKLYLIDMELRE 297

Query: 124 --GSAKLSEAIGD--DSEAVVCA-TGFQPGWDL--------------FAP---WKVDNFG 161
                KL   IGD  D + V  A  G +   D+              + P    K +  G
Sbjct: 298 KFPELKLRFYIGDVRDRDRVERAMEGHKV--DIVFHAAALKHVPLVEYNPEEAIKTNVLG 355

Query: 162 TVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI 218
           T N+ EA  K GV +F+LIS+         + +NP     NV G T   K  AE+  
Sbjct: 356 TENVAEAAIKNGVKKFVLIST--------DKAVNPT----NVMGAT---KRLAEKLF 397

Length = 588

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 7/77 (9%)

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKA 119
            + +K K + V GA    G+  VEQLLA+G A V A  RD +    +++   P +  ++ 
Sbjct: 1   MMDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE----SVTDLGPRVVPLQL 56

Query: 120 DVT--EGSAKLSEAIGD 134
           DVT     A  +EA  D
Sbjct: 57  DVTDPASVAAAAEAASD 73

Length = 238

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 17/129 (13%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA--KTTLSKDNPSLQIVKADVTEGSAK- 127
           V G  G  G+ I+  LL +   +K  +R LDKA     +     S         EG  K 
Sbjct: 4   VTGGGGFLGQHIIRLLLERKEELKE-IRVLDKAFGPELIEHFEKSQGKTYVTDIEGDIKD 62

Query: 128 ---LSEAIGDDSEAVVCATGFQPGWDLFAP------WKVDNFGTVNLVEACRKRGVNRFI 178
              L  A    S  +  A       D+F P       +V+  GT  ++EAC +  V R +
Sbjct: 63  LSFLFRACQGVSVVIHTAAIV----DVFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLV 118

Query: 179 LISSILVNG 187
             SSI V G
Sbjct: 119 YTSSIEVAG 127

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 46/271 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKT----TLSKDNPSLQIVKADV 121
           K + V GA+G     IV+ LL +G+ VKA VRDL D+ KT     L      L++ KAD+
Sbjct: 6   KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADL 65

Query: 122 TEGSAKLSEAIGDD----SEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK-RGVNR 176
            E S+      G D    + + V  T   P  +L  P      GT+N++  C++   V R
Sbjct: 66  LEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALK---GTINVLNTCKETPSVKR 122

Query: 177 FILISS---ILVNGAAMG--QILNPAYI--------FLNVFGLT-LIAKLQAEQYIRKSG 222
            IL SS   +L     +    +++  +           N + L+ ++A+  A ++ + +G
Sbjct: 123 VILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNG 182

Query: 223 INYTIIRPGGLRNE--PPTGNIIMET-----------EDTLYEGTISRDQVAEVAVEALL 269
           I+  ++ PG +      PT N  +E             +  Y     RD VA   ++AL 
Sbjct: 183 IDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRD-VALAHIKALE 241

Query: 270 HPESSYKVVEIISRVDAPKRSYEDLFGSIKQ 300
            P ++ + +     +D P  S  D+   +++
Sbjct: 242 TPSANGRYI-----IDGPIMSVNDIIDILRE 267

Length = 322

>gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 45/176 (25%), Positives = 65/176 (36%), Gaps = 38/176 (21%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V GA G  G+ +   L  +G  V A  R                   + D+T+  A +
Sbjct: 1   ILVTGANGQLGRELTRLLAERGVEVVALDRP------------------ELDLTDPEA-V 41

Query: 129 SEAIGDDSEAVVCATGFQPGWDL-----FAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
           +  + +    VV         D         + V+  G  NL EAC  RG    I IS+ 
Sbjct: 42  AALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAARGA-PLIHISTD 100

Query: 184 LV-NGAAMGQ-----ILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
            V +GA  G         P    LNV+G T   KL  EQ +  +   + I+R   +
Sbjct: 101 YVFDGAKGGPYREDDPTGP----LNVYGRT---KLAGEQAVLAANPRHLILRTAWV 149

L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 42/242 (17%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT---- 122
           K + + G +   G  +   L A+G+ V A  R+ DK ++     N +L++++ DVT    
Sbjct: 1   KVVLITGCSSGIGLALALALAAQGYRVIATARNPDKLESLGELLNDNLEVLELDVTDEES 60

Query: 123 -EGSAKLSEAIGDDSEAVVCATGF--------QPGWDLFAPWKVDNFGTVNLVEAC---- 169
            + + K         + +V   G+            ++   ++V+ FG + +  A     
Sbjct: 61  IKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLRVTRAFLPLM 120

Query: 170 RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK-LQAEQYIRKSGINYTII 228
           RK+G  R + +SS+      +       Y   +   L  +++ L+ E  +   GI  TII
Sbjct: 121 RKQGSGRIVNVSSV---AGLVPTPFLGPY-CASKAALEALSESLRLE--LAPFGIKVTII 174

Query: 229 RPGGLR-----------NEPPTGNI-------IMETEDTLYEGTISRDQVAEVAVEALLH 270
            PG +R            E P  +        I E    +       ++VA+V V+AL  
Sbjct: 175 EPGPVRTGFADNAAGSALEDPEISPYAPERKEIKENAAGVGSNPGDPEKVADVIVKALTS 234

Query: 271 PE 272
             
Sbjct: 235 ES 236

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 26/146 (17%)

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSL 114
              E          V GATG  G  +V+ LL +G+ V A +RD  K+   LSK  +   L
Sbjct: 1   MELEGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRL 60

Query: 115 QIVKADVT-EGSAKLSEAI-GDDSEAVVCATGFQPGWDLFAPWKVDNF------------ 160
           ++ +AD+  EGS    EA+ G D    V A+      +       +N             
Sbjct: 61  RLFRADLQEEGS--FDEAVKGCDGVFHVAAS-----MEFDVSSDHNNIEEYVQSKVIDPA 113

Query: 161 --GTVNLVEACRKRG-VNRFILISSI 183
             GT+N++++C K   V R +  SSI
Sbjct: 114 IKGTLNVLKSCLKSKTVKRVVFTSSI 139

Length = 353

>gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 30/191 (15%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           K+ + GA+G  G+R+ E+LL+     +  +  +D          P +  +  D+      
Sbjct: 2   KVLITGASGFVGQRLAERLLSDVPNER--LILIDVVSPKAPSGAPRVTQIAGDLAV--PA 57

Query: 128 LSEAIGDDSEAVV-CATGFQPGWDLFAPWKVDNF---------GTVNLVEACRK-RGVNR 176
           L EA+ +    VV        G          +F         GT NL+EA RK     R
Sbjct: 58  LIEALANGRPDVVFHLAAIVSGGA------EADFDLGYRVNVDGTRNLLEALRKNGPKPR 111

Query: 177 FILISSILVNGAAM--GQILNPAYIFLNVFGLTLIAKLQAE----QYIRKSGINYTIIRP 230
           F+  SS+ V G  +      + A    + +G     K   E     Y R+  ++   +R 
Sbjct: 112 FVFTSSLAVYGLPLPNPVTDHTALDPASSYGA---QKAMCELLLNDYSRRGFVDGRTLRL 168

Query: 231 GGLRNEPPTGN 241
             +   P   N
Sbjct: 169 PTVCVRPGRPN 179

Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|234294 TIGR03649, ergot_EASG, ergot alkaloid biosynthesis protein, AFUA_2G17970 family

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 61/249 (24%), Positives = 88/249 (35%), Gaps = 71/249 (28%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS--- 125
           I + G TG +  RI   L A         R    +        P+ + VK D  +     
Sbjct: 2   ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS------AGPNEKHVKFDWLDEDTWD 55

Query: 126 AKLSEAIGDDSE-AVVCATGFQPGWDLFAPWKVDNFGTVN-LVEACRKRGVNRFILI--S 181
              S   G + E + V        + L AP   D    +   ++  R +GV RF+L+  S
Sbjct: 56  NPFSSDDGMEPEISAV--------Y-LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSAS 106

Query: 182 SILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-KSGINYTIIRPG----GLRNE 236
            I   G AMGQ+                       ++    G+ YT++RP         E
Sbjct: 107 IIEKGGPAMGQV---------------------HAHLDSLGGVEYTVLRPTWFMENFSEE 145

Query: 237 PPTGNIIMETEDTLYEGT-------ISRDQVAEVAVEAL------------LHPES-SY- 275
                I    E+ +Y  T       +S D +A VA  AL            L PE  +Y 
Sbjct: 146 FHVEAI--RKENKIYSATGDGKIPFVSADDIARVAYRALTDKVAPNTDYVVLGPELLTYD 203

Query: 276 KVVEIISRV 284
            V EI+SRV
Sbjct: 204 DVAEILSRV 212

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. Length = 285

>gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 34/184 (18%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-------TLSKDNPSLQIV 117
           K K I V G  GS G  +V Q+L K    K  V D D+ K             +  L+ +
Sbjct: 1   KGKTILVTGGAGSIGSELVRQIL-KFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFI 59

Query: 118 KADVTEGSAKLSEAIGDDSEAVV---CATGFQPGWDL--FAPWKVDNFGTVNLVEACRKR 172
             DV +   +L  A  +    +V    A    P  +       K +  GT N+++A  + 
Sbjct: 60  IGDVRD-KERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIEN 118

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-----RKSGINYTI 227
           GV +F+ IS+   + A      NP     NV G T   K  AE+ +       S   ++ 
Sbjct: 119 GVEKFVCIST---DKAV-----NPV----NVMGAT---KRVAEKLLLAKNEYSSSTKFST 163

Query: 228 IRPG 231
           +R G
Sbjct: 164 VRFG 167

UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287

>gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 45/191 (23%), Positives = 62/191 (32%), Gaps = 63/191 (32%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V G  GS G  +  Q+L         +    + +  L +    L+    D      KL
Sbjct: 1   VLVTGGGGSIGSELCRQILKFNPKK---IILFSRDEFKLYEIRQELRQEYND-----PKL 52

Query: 129 SEAIGD--DSEAVVCATGFQPGWDLFAPWKVD------------------------N-FG 161
              IGD  D E +                 VD                        N  G
Sbjct: 53  RFFIGDVRDRERLE---------RAMEQHGVDTVFHAAALKHVPLVEYNPMEAIKTNVLG 103

Query: 162 TVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI--- 218
           T N+ EA  + GV +F+LIS+   + A      NP     NV G T   K  AE+     
Sbjct: 104 TENVAEAAIENGVEKFVLIST---DKAV-----NPT----NVMGAT---KRLAEKLFQAA 148

Query: 219 -RKSGINYTII 228
            R+SG   T  
Sbjct: 149 NRESGSGKTRF 159

This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280

>gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + + G  G  G+R+  QLLA+G+ V    R  +K           L    AD+T+     
Sbjct: 1   VLILGC-GYLGQRLARQLLAQGWQVTGTTRSPEKLAADRPAGVTPLA---ADLTQ----- 51

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNG 187
              +  D + +V +    P    +        G   L++A  +   V R I +SS  V G
Sbjct: 52  -PGLLADVDHLVISLP--PPAGSYRGGYDP--GLRALLDALAQLPAVQRVIYLSSTGVYG 106

Query: 188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG-INYTIIRPGGL 233
              G+ ++      N    +  A L+AEQ +   G    TI+R  G+
Sbjct: 107 DQQGEWVDETSP-PNPSTESGRALLEAEQALLALGSKPTTILRLAGI 152

Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251

>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 36/174 (20%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KI + GATG  G+ +V  L  +G+ V               +   SL  +  D+T+  A 
Sbjct: 1   KILITGATGMLGRALVRLLKERGYEV-----------IGTGRSRASLFKL--DLTDPDA- 46

Query: 128 LSEAIGDDSEAVV--CATGFQPG---WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
           + EAI D    V+  CA   +      D    ++V+     NL  A ++ G  R I IS+
Sbjct: 47  VEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGA-RLIHIST 105

Query: 183 ILV-NGAAMGQILNPAY------IFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
             V +G          Y        LNV+G +   KL  E  +  +   Y I+R
Sbjct: 106 DYVFDGKK------GPYKEEDAPNPLNVYGKS---KLLGEVAVLNANPRYLILR 150

dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 57/212 (26%), Positives = 79/212 (37%), Gaps = 52/212 (24%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPS----------LQIV 117
           KI V G  G  G   V QLL  G  V      LD     LS  +            +  V
Sbjct: 1   KILVTGGAGYIGSHTVRQLLESGHEVVI----LD----NLSNGSREALPRGERITPVTFV 52

Query: 118 KADVTEGSAKLSEAIGD-DSEAVVCATGFQP-GWDLFAPWKV-DN--FGTVNLVEACRKR 172
           + D+ +    L     +   +AV+   G    G  +  P K   N   GT+NL+EA ++ 
Sbjct: 53  EGDLRD-RELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQA 111

Query: 173 GVNRFILISSILVNGAAM------GQILNPAYIFLNVFGLTLIAKLQAEQYIR-----KS 221
           GV +FI  SS  V G            L P     N +G +   KL +EQ +R       
Sbjct: 112 GVKKFIFSSSAAVYGEPSSIPISEDSPLGPI----NPYGRS---KLMSEQILRDLQKADP 164

Query: 222 GINYTIIR--------PGGLRNE--PPTGNII 243
             +Y I+R        P G   E  P   ++I
Sbjct: 165 DWSYVILRYFNVAGAHPSGDIGEDPPGITHLI 196

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 19/134 (14%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKD--NPSLQIV 117
           S + K + V GA+G     +V+ LL +G+ VKA VRD +  K T   L+ D     L + 
Sbjct: 1   SGEGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLF 60

Query: 118 KAD-VTEGSAKLSEAIGDDSEAVV-CATGF-----QPGWDLFAPWKVDNFGTVNLVEACR 170
           KA+ + EGS    +++ D  E V   A+ F      P  +L  P  V   GT+N++ +C 
Sbjct: 61  KANLLEEGSF---DSVVDGCEGVFHTASPFYHDVTDPQAELIDP-AVK--GTLNVLRSCA 114

Query: 171 K-RGVNRFILISSI 183
           K   V R ++ SS+
Sbjct: 115 KVPSVKRVVVTSSM 128

Length = 322

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 43/220 (19%)

Query: 73  GATGSSGKRIVEQLLAKGFAVK--AGVRDLDKA------KTTLSKDNPS--------LQI 116
           GATG  GK ++E+LL     VK    VR  D        +  L K            +  
Sbjct: 3   GATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERIIP 62

Query: 117 VKADVTEGSAKLSEA----IGDDSEAVV-CA--TGFQPGWDLFAPWKVDNFGTVNLVEAC 169
           V  D++E +  LS+     + ++ + ++  A    F            +  GT  ++   
Sbjct: 63  VAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFV--EPYSDLRATNVLGTREVLRLA 120

Query: 170 RKRGVNRFILISSILVNGAAMGQI-----------LNPAYIFLNVFGLTLIAKLQAEQYI 218
           ++     F  +S+  VNG   G +                   N +  +   K  AEQ +
Sbjct: 121 KQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQS---KWLAEQLV 177

Query: 219 RK--SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTIS 256
           R+   G+   I RP  +  E  TG   +  +D    G + 
Sbjct: 178 REAAGGLPVVIYRPSIITGESRTG--WINGDDFGPRGLLG 215

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 57/239 (23%), Positives = 90/239 (37%), Gaps = 35/239 (14%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           + V GATG  G R+V +LL +G  V+A VR  +  K      +  + +V+ D+ E    L
Sbjct: 1   VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPE--KLADRPWSERVTVVRGDL-EDPESL 57

Query: 129 SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG- 187
             A+     A         G D F   + D     N   A R  GV R I +  ++  G 
Sbjct: 58  RAALEGIDTAYYLVHSMGSGGD-FE--EADRRAARNFARAARAAGVKRIIYLGGLIPKGE 114

Query: 188 ---------AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPP 238
                    A +G+IL    + +           +A   I     ++ ++R   L    P
Sbjct: 115 ELSPHLRSRAEVGEILRAGGVPVTEL--------RAAVIIGSGSASFEMVR--YLVERLP 164

Query: 239 TGNIIMETEDTLYEGT--ISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLF 295
               +M T   +      I+   V E  V AL  P ++ +  EI         SY+D+ 
Sbjct: 165 ----VMITPRWVNTPCQPIAIRDVLEYLVAALDRPATAGETFEIGGP---DVLSYKDMM 216

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 25/146 (17%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTE 123
           K   V GA+   G+ I  +L A G  V     + + A+     L       +++  DV++
Sbjct: 6   KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD 65

Query: 124 GSAKLSEAIGDDSEA-----VVCA----TGFQPGWDL-FAPWK--VD-NF-GTVNLVEAC 169
             A +   I    EA     ++      T       +    W   +D N  GT N+V A 
Sbjct: 66  -EAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAA 124

Query: 170 ----RKRGVNRFILISSILVNGAAMG 191
                K    R + ISS+       G
Sbjct: 125 LPPMIKARYGRIVNISSV---SGVTG 147

Length = 246

>gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKADVT-EG 124
           V GA+G  G  +V +LL +G+ V+A VRD    K       L      L + KAD+  EG
Sbjct: 10  VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEG 69

Query: 125 SAKLSEAIGDDSEAVVCAT--GFQ---PGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFI 178
           S    +AI   +     AT   F+   P  ++  P  V+  G +++++AC K   V R +
Sbjct: 70  S--FDDAIRGCTGVFHVATPMDFESKDPENEVIKP-TVN--GMLSIMKACAKAKTVRRIV 124

Query: 179 LISS 182
             SS
Sbjct: 125 FTSS 128

Length = 351

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 35/157 (22%), Positives = 55/157 (35%), Gaps = 24/157 (15%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKA 119
            ++ +   V GA    G+ I  +L A G  V       D A  T   +       +  + 
Sbjct: 3   DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62

Query: 120 DVTEGSAKLSEAIGDDSEA-----VVCA----TGFQPGWDL-FAPWK----VDNFGTVNL 165
           DV +  A L  A+    E      ++ A        P  ++    W+    V+  GT  L
Sbjct: 63  DVRD-RAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLL 121

Query: 166 VEAC----RKRGVNRFILISSILVNGAAMGQILNPAY 198
            +A      + G  R +L SS  V G  +G      Y
Sbjct: 122 TQAALPALIRAGGGRIVLTSS--VAGPRVGYPGLAHY 156

Length = 251

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 35/193 (18%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRD---LDKAKTTLSKDNPSLQIVKADVTEGS 125
           + + GA+   G+ +  +    G+ V    R    LD+ K  L   NPS+++   DVT+  
Sbjct: 1   VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELLNPNPSVEVEILDVTDEE 60

Query: 126 ------AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGT--VNL----------VE 167
                 A+L   +G     ++ A   +        +K     T   NL          + 
Sbjct: 61  RNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFK-AFRETIDTNLLGAAAILEAALP 119

Query: 168 ACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKLQAEQYIRKSGI 223
             R +G    +LISS+    A  G     AY      L+    +L   +      +K GI
Sbjct: 120 QFRAKGRGHLVLISSVA---ALRGLPGAAAYSASKAALSSLAESLRYDV------KKRGI 170

Query: 224 NYTIIRPGGLRNE 236
             T+I PG +   
Sbjct: 171 RVTVINPGFIDTP 183

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 54/243 (22%), Positives = 84/243 (34%), Gaps = 41/243 (16%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAV----KAGVRDLDKAKTTLSKDNPSLQIVK 118
           S+  +   V GA    G+ I  +L   G  V    ++     ++    +       Q V+
Sbjct: 3   SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQ 62

Query: 119 ADVTEGSAKLSEAIGDDSEA------VVCATGFQPGWDLFAPWKVDNF---------GTV 163
           ADVT+ +A L  A+    E       +V   G        A    D +         G  
Sbjct: 63  ADVTDKAA-LEAAVAAAVERFGRIDILVNNAGIFE-DKPLADMSDDEWDEVIDVNLSGVF 120

Query: 164 NLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV--FGLT-LIAKLQAEQ 216
           +L+ A     RK+   R + ISS+       G+     Y        GLT  +A+  AE 
Sbjct: 121 HLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGRS---NYAAAKAGLVGLTKALARELAE- 176

Query: 217 YIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISR----DQVAEVAVEALLHPE 272
                GI   ++ PG +  +     I    E    E  + R    + +A  AV  L    
Sbjct: 177 ----YGITVNMVAPGDIDTDMKEATIEEAREAKDAETPLGRSGTPEDIAR-AVAFLCSDA 231

Query: 273 SSY 275
           S Y
Sbjct: 232 SDY 234

Length = 249

>gnl|CDD|187651 cd08947, NmrA_TMR_like_SDR_a, NmrA (a transcriptional regulator), HSCARG (an NADPH sensor), and triphenylmethane reductase (TMR) like proteins, atypical (a) SDRs

 Score = 39.5 bits (92), Expect = 9e-04
 Identities = 52/232 (22%), Positives = 82/232 (35%), Gaps = 52/232 (22%)

Query: 69  IFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           I V GATG  G  ++  LLAKG   V+A VR+++KA T        +++ + D       
Sbjct: 1   IAVTGATGQQGGSVIRHLLAKGASQVRAVVRNVEKAATLAD---QGVEVRQGDY-NQPEL 56

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
           L +A    S+  +               K       N+ +A R+ GV     I S     
Sbjct: 57  LQKAFAGASKLFIITGPHYDNTLEIKQGK-------NVADAARRAGVKH---IYSTGYAF 106

Query: 188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG---------GLRNEP- 237
           A   +                  KL  E  IR +GI YT +R G         GL     
Sbjct: 107 A---EESAIPL---------AHVKLAVEYAIRTTGIPYTFLRNGLYTENFVSEGLPAADT 154

Query: 238 -------PTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS 282
                  P G+  +         +++R+ +   A + L       K + ++S
Sbjct: 155 GSGAIVLPAGDGPVP--------SVTRNDLGPAAAQLLKEEGHEGKTINLVS 198

Atypical SDRs belonging to this subgroup include NmrA, HSCARG, and TMR, these proteins bind NAD(P) but they lack the usual catalytic residues of the SDRs. Atypical SDRs are distinct from classical SDRs. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. TMR, an NADP-binding protein, lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 224

>gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 14/128 (10%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKAD- 120
           K + V GA+G     IV+ LL +G+ + A VRD    K T     L      L++ KAD 
Sbjct: 6   KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADL 65

Query: 121 VTEGSAKLS----EAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK-RGVN 175
           + EGS +L+    E +   +  V       P  +L  P  V+  GT+N++  C K   V 
Sbjct: 66  LDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINP-AVN--GTINVLRTCTKVSSVK 122

Query: 176 RFILISSI 183
           R IL SS+
Sbjct: 123 RVILTSSM 130

Length = 325

>gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--------KAKTTLSKDNPSLQIVK 118
            KI V GA G  G  + ++LL +G  V  G+ +L+        +A+  L   +   + VK
Sbjct: 1   MKILVTGAAGFIGFHVAKRLLERGDEV-VGIDNLNDYYDVRLKEARLELLGKSGGFKFVK 59

Query: 119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPG--WDLFAPW---KVDNFGTVNLVEACRKRG 173
            D+ E    L     D     V     Q G  + L  P      +  G +NL+E CR  G
Sbjct: 60  GDL-EDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFG 118

Query: 174 VNRFILISSILVNGA 188
           V   +  SS  V G 
Sbjct: 119 VKHLVYASSSSVYGL 133

This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332

>gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 66/288 (22%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVK--AGVR--DLDKAKTTLSK-------------D 110
            + + GATG  G  ++ +LL +    K    VR  D + A   L               +
Sbjct: 1   TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60

Query: 111 NPSLQIVKADVTEGSAKLSEA----IGDDSEAVV-CA---TGFQPGWDLFAPWKVDNFGT 162
              +++V  D+++ +  LS+     + ++ + ++          P  +L     V   GT
Sbjct: 61  LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEELKPA-NVL--GT 117

Query: 163 VNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLN----VFGLTLIA-----KLQ 213
             L++      +     +S++        +  N      +         L       K  
Sbjct: 118 KELLKLAATGKLKPLHFVSTL---SVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKWV 174

Query: 214 AEQYIR---KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYE--------GTISR----- 257
           AE+ +R     G+   IIRPG +  +  TG  I  T+D  +         G         
Sbjct: 175 AEKLLREAANRGLPVAIIRPGNIFGDSETG--IGNTDDFFWRLLKGCLQLGIYPISGAPL 232

Query: 258 -----DQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ 300
                D VA   V+  L+  + + +  ++   + P  S  DL  ++++
Sbjct: 233 DLSPVDWVARAIVKLALNESNEFSIYHLL---NPPLISLNDLLDALEE 277

This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 50/193 (25%), Positives = 72/193 (37%), Gaps = 55/193 (28%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEG- 124
            K+ V G  G  G   V QLL  G  V      LD     LS  +  +L  ++    EG 
Sbjct: 1   MKVLVTGGAGYIGSHTVRQLLKTGHEVVV----LD----NLSNGHKIALLKLQFKFYEGD 52

Query: 125 ---SAKLSEAIGDDS-EAVVCATGFQPGWDLFAPWKV------------DN--FGTVNLV 166
               A L+    ++  +AVV           FA                DN   GT+NL+
Sbjct: 53  LLDRALLTAVFEENKIDAVV----------HFAASISVGESVQNPLKYYDNNVVGTLNLI 102

Query: 167 EACRKRGVNRFILISSILVNGAAM------GQILNPAYIFLNVFGLTLIAKLQAEQYIR- 219
           EA  + GV +FI  S+  V G            L P    +N +G +   KL +E+ +R 
Sbjct: 103 EAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAP----INPYGRS---KLMSEEILRD 155

Query: 220 ---KSGINYTIIR 229
               +     I+R
Sbjct: 156 AAKANPFKVVILR 168

Length = 329

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 36/171 (21%), Positives = 54/171 (31%), Gaps = 28/171 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAV------KAGVRDLDKAKTTLSKDNPSLQIVKAD 120
             + + G TG  G  +   L A+G         +       +    L      + +   D
Sbjct: 1   GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACD 60

Query: 121 VTEGSA--KLSEAIGDDSE---AVV-CATGFQPG---------WD-LFAPWKVDNFGTVN 164
           V +  A   L  A+         VV  A     G         ++ + AP KV   G  N
Sbjct: 61  VADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAP-KVT--GAWN 117

Query: 165 LVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE 215
           L E  R   +  F+L SS+      +G      Y   N     L    +AE
Sbjct: 118 LHELTRDLDLGAFVLFSSV---AGVLGSPGQANYAAANAALDALAEHRRAE 165

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKA 119
             +K   V G TG     +++ LL KG+AV   VRD +  K        ++   L+I  A
Sbjct: 7   TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGA 66

Query: 120 DVT-EGSAKLSEAIGDDSEAVVCATGFQ---PGWDLFAPWKVDNFGTVNLVEACRK-RGV 174
           D+T E S +   A  D    V     F    P  D+  P      G  N+++AC K + V
Sbjct: 67  DLTDEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQ---GVHNVLKACAKAKSV 123

Query: 175 NRFILISS 182
            R IL SS
Sbjct: 124 KRVILTSS 131

Length = 338

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 31/188 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD---LDKAKTTLSKDNPSLQIVKADVTE 123
           K   V  A+   G  I   L  +G  V    R+   L++A + L      +  V AD+T+
Sbjct: 2   KVALVTAASSGIGLAIARALAREGARVAICARNRENLERAASELRAGGAGVLAVVADLTD 61

Query: 124 GSA--KLSEAIGDDS---EAVVCATGFQPGWDLFAPWKVDNF---------GTVNLVEAC 169
                +L E  GD     + +V   G  P    FA    +++           + +V A 
Sbjct: 62  PEDIDRLVEKAGDAFGRVDILVNNAG-GPPPGPFAELTDEDWLEAFDLKLLSVIRIVRAV 120

Query: 170 ----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF--GLTLIAKLQAEQYIRKSGI 223
               ++RG  R + ISS+ V          P  +  NV   GL  + K  + +     G+
Sbjct: 121 LPGMKERGWGRIVNISSLTV-KEPE-----PNLVLSNVARAGLIGLVKTLSRELAPD-GV 173

Query: 224 NYTIIRPG 231
               + PG
Sbjct: 174 TVNSVLPG 181

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 37/191 (19%), Positives = 54/191 (28%), Gaps = 31/191 (16%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAV------KAGVRDLDKAKTTLSKDNPSLQIVK 118
             K   V GA+   G+ I   L  +G  V               A             V 
Sbjct: 4   SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVA 63

Query: 119 ADVT---EGSAKLSEAIGDDS---EAVVCATGFQPGWDLFAPWKVDNFG---TVNLV--- 166
           ADV+   E    L  A  ++    + +V   G             +++     VNL+   
Sbjct: 64  ADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAF 123

Query: 167 ----EACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV--FGLTLIAKLQAEQYIRK 220
                A       R + ISS+       G     AY         L  + K  A +    
Sbjct: 124 LLTRAALPLMKKQRIVNISSV---AGLGGPPGQAAY---AASKAALIGLTKALALEL-AP 176

Query: 221 SGINYTIIRPG 231
            GI    + PG
Sbjct: 177 RGIRVNAVAPG 187

Length = 251

>gnl|CDD|219957 pfam08659, KR, KR domain

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 28/137 (20%)

Query: 71  VAGATGSSGKRIVEQLLAKGFAVK-------AGVRDLDKAKTT-LSKDNPSLQIVKADVT 122
           V G  G  G  +   L  +G A                +A    L      + +V  DV+
Sbjct: 5   VTGGLGGLGLELARWLAERG-ARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACDVS 63

Query: 123 --EGSAKLSEAIGDDS---EAVV-CATGFQPG---------WD-LFAPWKVDNFGTVNLV 166
             +    L   I  D      V+  A   +           +  + AP KV   G  NL 
Sbjct: 64  DRDAVRALLAEIRADGPPLRGVIHAAGVLRDALLANMTAEDFARVLAP-KVT--GAWNLH 120

Query: 167 EACRKRGVNRFILISSI 183
           EA R R ++ F+L SSI
Sbjct: 121 EATRDRPLDFFVLFSSI 137

This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 27/103 (26%)

Query: 161 GTVNLVEACRKRGVNRFILISSILVNG-AAMGQI-----LNPAYIFLNVFGLTLIAKLQA 214
           GT+NL+EA R  GV  F+  SS  V G      I     LNP     N +G T   KL  
Sbjct: 99  GTLNLLEAMRAHGVKNFVFSSSAAVYGEPETVPITEEAPLNP----TNPYGRT---KLMV 151

Query: 215 EQYIR----KSGINYTIIR--------PGGLRNE--PPTGNII 243
           EQ +R      G+NY I+R        P GL  E      N+I
Sbjct: 152 EQILRDLAKAPGLNYVILRYFNPAGAHPSGLIGEDPQIPNNLI 194

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	100.0
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	100.0
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	100.0
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	100.0
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	100.0
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	100.0
PLN02427	386	UDP-apiose/xylose synthase	100.0
PLN02572	442	UDP-sulfoquinovose synthase	100.0
PLN02214	342	cinnamoyl-CoA reductase	100.0
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.98
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.97
CHL00194	317	ycf39 Ycf39; Provisional	99.97
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.97
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.97
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.97
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.97
PLN02650	351	dihydroflavonol-4-reductase	99.97
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.97
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.97
PLN00198	338	anthocyanidin reductase; Provisional	99.97
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.97
PLN02583	297	cinnamoyl-CoA reductase	99.97
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.97
PLN02653	340	GDP-mannose 4,6-dehydratase	99.97
PLN02206	442	UDP-glucuronate decarboxylase	99.97
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.97
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.97
PLN02240	352	UDP-glucose 4-epimerase	99.97
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.97
PLN02686	367	cinnamoyl-CoA reductase	99.97
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.97
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.96
PLN03209	576	translocon at the inner envelope of chloroplast su	99.96
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.96
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.96
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.96
PLN02260	668	probable rhamnose biosynthetic enzyme	99.96
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.96
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.96
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.96
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.96
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.96
PLN00016	378	RNA-binding protein; Provisional	99.96
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.96
PRK07201	657	short chain dehydrogenase; Provisional	99.95
PLN02996	491	fatty acyl-CoA reductase	99.95
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.95
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.95
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.95
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.95
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.95
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.95
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.95
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.95
PRK05865	854	hypothetical protein; Provisional	99.94
PRK08263	275	short chain dehydrogenase; Provisional	99.94
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.94
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.93
PRK06482	276	short chain dehydrogenase; Provisional	99.93
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.93
PLN02778	298	3,5-epimerase/4-reductase	99.93
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.93
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.93
PRK07806	248	short chain dehydrogenase; Provisional	99.93
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.93
PRK05875	276	short chain dehydrogenase; Provisional	99.92
PRK08339	263	short chain dehydrogenase; Provisional	99.92
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.92
PRK06180	277	short chain dehydrogenase; Provisional	99.92
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.92
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.92
PRK07067	257	sorbitol dehydrogenase; Provisional	99.92
PRK05717	255	oxidoreductase; Validated	99.92
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.92
PRK06128	300	oxidoreductase; Provisional	99.92
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.92
PRK08265	261	short chain dehydrogenase; Provisional	99.92
PRK07063	260	short chain dehydrogenase; Provisional	99.92
PRK05876	275	short chain dehydrogenase; Provisional	99.92
PLN02253	280	xanthoxin dehydrogenase	99.92
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.92
PRK07825	273	short chain dehydrogenase; Provisional	99.91
PLN02503	605	fatty acyl-CoA reductase 2	99.91
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.91
PRK07985	294	oxidoreductase; Provisional	99.91
PRK06914	280	short chain dehydrogenase; Provisional	99.91
PRK06114	254	short chain dehydrogenase; Provisional	99.91
PRK05867	253	short chain dehydrogenase; Provisional	99.91
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
PRK06196	315	oxidoreductase; Provisional	99.91
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.91
PRK06182	273	short chain dehydrogenase; Validated	99.91
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.91
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.91
PRK07074	257	short chain dehydrogenase; Provisional	99.91
PRK07774	250	short chain dehydrogenase; Provisional	99.91
PRK09186	256	flagellin modification protein A; Provisional	99.91
PRK07775	274	short chain dehydrogenase; Provisional	99.91
PRK06179	270	short chain dehydrogenase; Provisional	99.91
PRK12746	254	short chain dehydrogenase; Provisional	99.91
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.91
PRK07478	254	short chain dehydrogenase; Provisional	99.91
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.91
PRK08628	258	short chain dehydrogenase; Provisional	99.91
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.91
PRK06523	260	short chain dehydrogenase; Provisional	99.91
PRK06138	252	short chain dehydrogenase; Provisional	99.91
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK06398	258	aldose dehydrogenase; Validated	99.91
PRK08589	272	short chain dehydrogenase; Validated	99.91
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.9
PRK06841	255	short chain dehydrogenase; Provisional	99.9
PRK06139	330	short chain dehydrogenase; Provisional	99.9
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.9
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.9
PRK07454	241	short chain dehydrogenase; Provisional	99.9
PRK12828	239	short chain dehydrogenase; Provisional	99.9
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.9
PRK07024	257	short chain dehydrogenase; Provisional	99.9
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.9
PRK07060	245	short chain dehydrogenase; Provisional	99.9
PRK12747	252	short chain dehydrogenase; Provisional	99.9
PRK10538	248	malonic semialdehyde reductase; Provisional	99.9
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.9
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.9
PRK09135	249	pteridine reductase; Provisional	99.9
PRK05993	277	short chain dehydrogenase; Provisional	99.9
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.9
PRK07890	258	short chain dehydrogenase; Provisional	99.9
PRK08219	227	short chain dehydrogenase; Provisional	99.9
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.9
PRK05866	293	short chain dehydrogenase; Provisional	99.9
PRK09134	258	short chain dehydrogenase; Provisional	99.9
PRK06701	290	short chain dehydrogenase; Provisional	99.9
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.9
PRK12320	699	hypothetical protein; Provisional	99.9
PRK07856	252	short chain dehydrogenase; Provisional	99.9
PRK12827	249	short chain dehydrogenase; Provisional	99.9
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.9
PRK12742	237	oxidoreductase; Provisional	99.9
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.9
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.9
PRK05872	296	short chain dehydrogenase; Provisional	99.9
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.9
PRK12829	264	short chain dehydrogenase; Provisional	99.89
PRK07109	334	short chain dehydrogenase; Provisional	99.89
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.89
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.89
PRK07035	252	short chain dehydrogenase; Provisional	99.89
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.89
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.89
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.89
PRK08643	256	acetoin reductase; Validated	99.89
PRK07062	265	short chain dehydrogenase; Provisional	99.89
PRK12939	250	short chain dehydrogenase; Provisional	99.89
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.89
PRK09242	257	tropinone reductase; Provisional	99.89
PRK06101	240	short chain dehydrogenase; Provisional	99.89
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.89
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.89
PRK06500	249	short chain dehydrogenase; Provisional	99.89
PRK06172	253	short chain dehydrogenase; Provisional	99.89
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.89
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.89
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK05854	313	short chain dehydrogenase; Provisional	99.89
PRK06181	263	short chain dehydrogenase; Provisional	99.89
PRK07814	263	short chain dehydrogenase; Provisional	99.89
PRK06484	520	short chain dehydrogenase; Validated	99.89
PRK06194	287	hypothetical protein; Provisional	99.89
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.89
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK07791	286	short chain dehydrogenase; Provisional	99.89
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.89
PRK07577	234	short chain dehydrogenase; Provisional	99.88
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.88
PRK08267	260	short chain dehydrogenase; Provisional	99.88
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.88
PRK09291	257	short chain dehydrogenase; Provisional	99.88
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.88
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.88
PRK12937	245	short chain dehydrogenase; Provisional	99.88
PRK06949	258	short chain dehydrogenase; Provisional	99.88
PRK06483	236	dihydromonapterin reductase; Provisional	99.88
PRK05650	270	short chain dehydrogenase; Provisional	99.88
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.88
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.88
PRK08264	238	short chain dehydrogenase; Validated	99.88
PLN02260	668	probable rhamnose biosynthetic enzyme	99.88
PRK07041	230	short chain dehydrogenase; Provisional	99.88
PRK06057	255	short chain dehydrogenase; Provisional	99.88
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.88
PRK07023	243	short chain dehydrogenase; Provisional	99.88
PRK06125	259	short chain dehydrogenase; Provisional	99.88
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.88
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.88
PRK07102	243	short chain dehydrogenase; Provisional	99.88
PRK08278	273	short chain dehydrogenase; Provisional	99.88
PRK07326	237	short chain dehydrogenase; Provisional	99.88
PRK05884	223	short chain dehydrogenase; Provisional	99.88
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.88
PRK07904	253	short chain dehydrogenase; Provisional	99.88
PRK08226	263	short chain dehydrogenase; Provisional	99.87
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.87
PRK06197	306	short chain dehydrogenase; Provisional	99.87
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.87
PRK12743	256	oxidoreductase; Provisional	99.87
PRK09072	263	short chain dehydrogenase; Provisional	99.87
PRK05693	274	short chain dehydrogenase; Provisional	99.87
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PRK07677	252	short chain dehydrogenase; Provisional	99.87
PRK08251	248	short chain dehydrogenase; Provisional	99.87
PRK12744	257	short chain dehydrogenase; Provisional	99.87
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.87
PRK07831	262	short chain dehydrogenase; Provisional	99.87
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.87
PRK07576	264	short chain dehydrogenase; Provisional	99.87
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.87
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.87
KOG0725	270	consensus Reductases with broad range of substrate	99.87
PRK06123	248	short chain dehydrogenase; Provisional	99.87
PRK06940	275	short chain dehydrogenase; Provisional	99.87
PLN02780	320	ketoreductase/ oxidoreductase	99.87
PRK08324	681	short chain dehydrogenase; Validated	99.87
PRK05855	582	short chain dehydrogenase; Validated	99.87
PRK08703	239	short chain dehydrogenase; Provisional	99.86
PRK06924	251	short chain dehydrogenase; Provisional	99.86
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.86
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.86
PRK08017	256	oxidoreductase; Provisional	99.86
PRK08303	305	short chain dehydrogenase; Provisional	99.86
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.86
PRK06198	260	short chain dehydrogenase; Provisional	99.86
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.86
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.86
PRK07201	657	short chain dehydrogenase; Provisional	99.86
PRK07832	272	short chain dehydrogenase; Provisional	99.86
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.86
PRK12367	245	short chain dehydrogenase; Provisional	99.85
PRK07069	251	short chain dehydrogenase; Validated	99.85
PRK07578	199	short chain dehydrogenase; Provisional	99.85
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.85
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.85
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK06484	520	short chain dehydrogenase; Validated	99.85
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.85
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.85
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.85
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.84
PRK06953	222	short chain dehydrogenase; Provisional	99.84
PRK05599	246	hypothetical protein; Provisional	99.84
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.84
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.83
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.83
PRK08177	225	short chain dehydrogenase; Provisional	99.83
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.83
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.83
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.83
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	99.83
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.83
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.83
KOG1208	314	consensus Dehydrogenases with different specificit	99.82
PRK08862	227	short chain dehydrogenase; Provisional	99.81
PLN00015	308	protochlorophyllide reductase	99.8
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.79
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.79
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.78
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.78
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.78
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.77
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.77
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.76
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.76
KOG2774	366	consensus NAD dependent epimerase [General functio	99.75
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.75
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.75
COG2910	211	Putative NADH-flavin reductase [General function p	99.74
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.74
COG1028	251	FabG Dehydrogenases with different specificities (	99.72
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.72
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.66
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.64
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.6
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.59
KOG4288	283	consensus Predicted oxidoreductase [General functi	99.53
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.5
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.49
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.48
PRK06720	169	hypothetical protein; Provisional	99.43
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	99.37
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.31
PRK08309	177	short chain dehydrogenase; Provisional	99.28
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.19
PTZ00325	321	malate dehydrogenase; Provisional	98.99
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.97
PLN00106	323	malate dehydrogenase	98.89
PRK09620	229	hypothetical protein; Provisional	98.83
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.83
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.79
KOG3019	315	consensus Predicted nucleoside-diphosphate sugar e	98.79
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.75
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.68
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.62
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.62
PRK05086	312	malate dehydrogenase; Provisional	98.56
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	98.49
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	98.41
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.4
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.33
PRK14982	340	acyl-ACP reductase; Provisional	98.29
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.26
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.25
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.24
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.15
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.13
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.07
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	98.07
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	98.06
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.99
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.93
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.85
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.81
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.79
COG4982	866	3-oxoacyl-[acyl-carrier protein]	97.77
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.75
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.75
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.72
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.71
PRK09496	453	trkA potassium transporter peripheral membrane com	97.71
COG3268	382	Uncharacterized conserved protein [Function unknow	97.71
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.7
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.69
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.68
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.6
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.57
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.56
PRK05442	326	malate dehydrogenase; Provisional	97.55
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.54
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.52
PRK08223	287	hypothetical protein; Validated	97.52
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.5
PRK09496	453	trkA potassium transporter peripheral membrane com	97.5
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.49
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.49
PRK08328	231	hypothetical protein; Provisional	97.49
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.49
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.46
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.46
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.45
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.44
PRK04148	134	hypothetical protein; Provisional	97.43
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.41
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	97.36
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.36
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.35
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.35
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.32
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.32
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.32
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.32
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.27
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.27
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.26
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.26
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.26
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	97.25
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.25
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.23
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.22
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.22
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.22
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.22
PRK15116	268	sulfur acceptor protein CsdL; Provisional	97.2
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.2
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.2
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	97.19
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.18
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.18
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.18
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.17
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.17
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.15
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	97.15
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	97.15
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.13
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.13
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.13
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.13
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	97.12
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.11
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.1
PTZ00117	319	malate dehydrogenase; Provisional	97.1
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.08
PRK07411	390	hypothetical protein; Validated	97.07
PRK06223	307	malate dehydrogenase; Reviewed	97.07
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	97.06
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.05
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.02
PRK08655	437	prephenate dehydrogenase; Provisional	97.02
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.01
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.0
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	96.98
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	96.98
PLN02602	350	lactate dehydrogenase	96.98
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.97
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.96
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	96.95
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.94
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.94
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.93
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.88
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.88
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.86
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.85
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.85
PRK14851	679	hypothetical protein; Provisional	96.85
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.84
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.84
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.84
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.84
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.83
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.83
PRK10669	558	putative cation:proton antiport protein; Provision	96.81
PLN02383	344	aspartate semialdehyde dehydrogenase	96.81
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	96.81
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.81
PLN00203	519	glutamyl-tRNA reductase	96.8
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.77
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.76
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.75
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.74
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.74
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.73
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.72
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.72
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.72
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	96.71
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.71
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	96.7
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.7
PRK06849	389	hypothetical protein; Provisional	96.69
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.69
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.69
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.68
PRK14852	989	hypothetical protein; Provisional	96.66
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.66
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.66
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	96.65
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.62
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	96.61
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.58
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.56
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	96.54
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.54
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.52
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	96.51
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.51
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.49
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.46
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.45
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.44
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	96.42
PRK07877	722	hypothetical protein; Provisional	96.42
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.4
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.39
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.35
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	96.35
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	96.32
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	96.27
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.26
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.26
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	96.26
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.23
PLN02494	477	adenosylhomocysteinase	96.23
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.22
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	96.2
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.2
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.19
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	96.19
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.19
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.19
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.19
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.19
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.18
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.16
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.15
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	96.15
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	96.13
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	96.12
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.12
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.12
PRK06153	393	hypothetical protein; Provisional	96.07

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=7e-36  Score=251.11  Aligned_cols=227  Identities=23%  Similarity=0.259  Sum_probs=183.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+||||||+|+||+|++.+|+++|++|++++.-...-.+...  .....++++|+.| .+.+.+.|.+ ++|.|||+||.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~--~~~~~f~~gDi~D-~~~L~~vf~~~~idaViHFAa~   77 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALL--KLQFKFYEGDLLD-RALLTAVFEENKIDAVVHFAAS   77 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhh--hccCceEEecccc-HHHHHHHHHhcCCCEEEECccc
Confidence            689999999999999999999999999999876554444332  1117999999999 8999999987 89999999996


Q ss_pred             CC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH-
Q 022216          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-  220 (301)
Q Consensus       146 ~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-  220 (301)
                      ..    -+++..+|+.|+.||.+|+++|++.++++|||.||+++||.....|..++. +..|.+.||+||++.|++++. 
T Consensus        78 ~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~-~~~p~NPYG~sKlm~E~iL~d~  156 (329)
T COG1087          78 ISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETS-PLAPINPYGRSKLMSEEILRDA  156 (329)
T ss_pred             cccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCC-CCCCCCcchhHHHHHHHHHHHH
Confidence            53    257888999999999999999999999999999999999988877766654 445889999999999998864 


Q ss_pred             ---cCCcEEEEecCcccCCCCCCce-------------------------eec------cccccccCCCCHHHHHHHHHH
Q 022216          221 ---SGINYTIIRPGGLRNEPPTGNI-------------------------IME------TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       221 ---~~i~~~~irpg~v~~~~~~~~~-------------------------~~~------~~~~~~~~~v~~~Dva~~~~~  266 (301)
                         .+++++++|.+++.|....+.+                         .+-      .+..-.+++||+.|+|++++.
T Consensus       157 ~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~  236 (329)
T COG1087         157 AKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVL  236 (329)
T ss_pred             HHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHH
Confidence               6899999999999987433321                         111      112233468999999999998


Q ss_pred             HhcCCCC--CCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLHPES--SYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~~~~--~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +|+.-..  ...+||++++   ...|..|+++.+++
T Consensus       237 Al~~L~~~g~~~~~NLG~G---~G~SV~evi~a~~~  269 (329)
T COG1087         237 ALKYLKEGGSNNIFNLGSG---NGFSVLEVIEAAKK  269 (329)
T ss_pred             HHHHHHhCCceeEEEccCC---CceeHHHHHHHHHH
Confidence            8753221  2258999996   99999999998875

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=100.00  E-value=1.5e-33  Score=254.02  Aligned_cols=233  Identities=15%  Similarity=0.124  Sum_probs=180.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh----cccc----CCCCeEEEEccCCCChHhHHHHhc
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSK----DNPSLQIVKADVTEGSAKLSEAIG  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~  133 (301)
                      ..+++|+||||||+||||++++++|+++|++|++++|.......    ....    ...++.++.+|++| .+.+.+++.
T Consensus        11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d-~~~l~~~~~   89 (348)
T PRK15181         11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK-FTDCQKACK   89 (348)
T ss_pred             ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC-HHHHHHHhh
Confidence            45678999999999999999999999999999999986543211    1100    11368899999999 888999999


Q ss_pred             CCCCEEEEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          134 DDSEAVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      + +|+|||+|+...    ..++...+++|+.|+.+++++|++.++++|||+||..+||.....+..++ .+..|.+.|+.
T Consensus        90 ~-~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-~~~~p~~~Y~~  167 (348)
T PRK15181         90 N-VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-RIGRPLSPYAV  167 (348)
T ss_pred             C-CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-CCCCCCChhhH
Confidence            8 999999998543    13455678999999999999999999999999999999986544333332 23356678999


Q ss_pred             HHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc-------------------eeeccccccccCCCCHHHHHHHHHH
Q 022216          210 AKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN-------------------IIMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       210 sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~-------------------~~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      +|.++|++++    +++++++++||++++||.....                   +...+......+++|++|+|++++.
T Consensus       168 sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~  247 (348)
T PRK15181        168 TKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLL  247 (348)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHH
Confidence            9999998764    4689999999999999854211                   0111222333468999999999987


Q ss_pred             HhcCCC--CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLHPE--SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++..+.  ..+++||++++   +.++++|+++.+.+
T Consensus       248 ~~~~~~~~~~~~~yni~~g---~~~s~~e~~~~i~~  280 (348)
T PRK15181        248 SATTNDLASKNKVYNVAVG---DRTSLNELYYLIRD  280 (348)
T ss_pred             HHhcccccCCCCEEEecCC---CcEeHHHHHHHHHH
Confidence            775432  35689999986   89999999999864

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=100.00  E-value=2.8e-32  Score=234.91  Aligned_cols=235  Identities=83%  Similarity=1.256  Sum_probs=192.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-cCCCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-GDDSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~~~d~Vi~~A  143 (301)
                      .+|+||||||+|+||++++++|+++|++|+++.|++++...... ...++.++.+|++|..+.+.+.+ .+ +|+||+++
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~l~~~~~~~-~d~vi~~~   93 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP-QDPSLQIVRADVTEGSDKLVEAIGDD-SDAVICAT   93 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc-cCCceEEEEeeCCCCHHHHHHHhhcC-CCEEEECC
Confidence            57899999999999999999999999999999999877654433 23478999999998336777777 57 99999999


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCC
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI  223 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i  223 (301)
                      |.....+....+++|..++.++++++++.++++||++||.++|+...+.+..+.|...+++..|...|..+|+++++.++
T Consensus        94 g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~gi  173 (251)
T PLN00141         94 GFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRKSGI  173 (251)
T ss_pred             CCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            87543344456789999999999999999989999999999998654444444455556666777889999999988999


Q ss_pred             cEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhcC
Q 022216          224 NYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQR  301 (301)
Q Consensus       224 ~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~~  301 (301)
                      ++++||||+++++...+.+........+.++++++|+|++++.++.++...+.++++.+.+++...+++|+...++++
T Consensus       174 ~~~iirpg~~~~~~~~~~~~~~~~~~~~~~~i~~~dvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (251)
T PLN00141        174 NYTIVRPGGLTNDPPTGNIVMEPEDTLYEGSISRDQVAEVAVEALLCPESSYKVVEIVARADAPKRSYKDLFASIKQK  251 (251)
T ss_pred             cEEEEECCCccCCCCCceEEECCCCccccCcccHHHHHHHHHHHhcChhhcCcEEEEecCCCCCchhHHHHHHHhhcC
Confidence            999999999998765555544333334456899999999999999888777889999998777889999999999874

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=100.00  E-value=5.6e-32  Score=233.38  Aligned_cols=228  Identities=23%  Similarity=0.274  Sum_probs=177.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh-----ccccCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-----TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      .+++|+||||+||||+++++.|+++||+|+++.|+++..+.     .+.....+...+.+||+| .+++.+++.+ +|+|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d-~~sf~~ai~g-cdgV   82 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLD-EGSFDKAIDG-CDGV   82 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccc-cchHHHHHhC-CCEE
Confidence            47899999999999999999999999999999999987332     112245569999999999 8999999999 9999


Q ss_pred             EEccCCCCCCC--CC-CceeeehHHHHHHHHHHHHcC-CCEEEEeccccccccc---CC--C------CCCcchhhcchh
Q 022216          140 VCATGFQPGWD--LF-APWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAA---MG--Q------ILNPAYIFLNVF  204 (301)
Q Consensus       140 i~~Ag~~~~~~--~~-~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~---~~--~------~~~~~~~~~~~~  204 (301)
                      ||+|.+.....  ++ +.++.++.|+.|++++|++.. ++|||++||+++-...   .+  .      +.+.+++..+ -
T Consensus        83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~-~  161 (327)
T KOG1502|consen   83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCK-K  161 (327)
T ss_pred             EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhh-H
Confidence            99998654322  23 688999999999999999987 9999999999865332   11  1      1122222222 2


Q ss_pred             hHHHHHHHHHHHHH----HHcCCcEEEEecCcccCCCCCCcee-------------eccccccccCCCCHHHHHHHHHHH
Q 022216          205 GLTLIAKLQAEQYI----RKSGINYTIIRPGGLRNEPPTGNII-------------METEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       205 ~~y~~sK~~~e~~~----~~~~i~~~~irpg~v~~~~~~~~~~-------------~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      .+|..+|..+|+.+    .+.+++.+.|.|+.|.||.....+.             .....+.+..++|++|+|++++.+
T Consensus       162 ~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a  241 (327)
T KOG1502|consen  162 LWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLA  241 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHH
Confidence            68999999999654    4578999999999999997655211             112233344589999999999999


Q ss_pred             hcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++.+.+. +.|.+.+    +...+.|+++.+.+
T Consensus       242 ~E~~~a~-GRyic~~----~~~~~~ei~~~l~~  269 (327)
T KOG1502|consen  242 LEKPSAK-GRYICVG----EVVSIKEIADILRE  269 (327)
T ss_pred             HcCcccC-ceEEEec----CcccHHHHHHHHHH
Confidence            9999865 5677776    56669999998865

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=100.00  E-value=2.8e-32  Score=237.62  Aligned_cols=226  Identities=22%  Similarity=0.244  Sum_probs=170.4

Q ss_pred             EEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCCC
Q 022216           70 FVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQP  147 (301)
Q Consensus        70 lVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~  147 (301)
                      |||||+||||++++++|+++|  ++|+++++.+..............+++++|++| .+++.+++++ +|+|||+|+...
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d-~~~l~~a~~g-~d~V~H~Aa~~~   78 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITD-PESLEEALEG-VDVVFHTAAPVP   78 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEecccc-HHHHHHHhcC-CceEEEeCcccc
Confidence            699999999999999999999  799999887654331111122333499999999 8999999999 999999998654


Q ss_pred             CC---CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC-CCCC---Ccchh-hcchhhHHHHHHHHHHHHHH
Q 022216          148 GW---DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-GQIL---NPAYI-FLNVFGLTLIAKLQAEQYIR  219 (301)
Q Consensus       148 ~~---~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~-~~~~---~~~~~-~~~~~~~y~~sK~~~e~~~~  219 (301)
                      ..   ..+.++++|+.||.+++++|++.+++|+||+||.++++... +.+.   ++..+ +..+...|..||..+|+++.
T Consensus        79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~  158 (280)
T PF01073_consen   79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKALAEKAVL  158 (280)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHHHHHHHH
Confidence            32   35568899999999999999999999999999999987621 2111   12211 22356789999999999875


Q ss_pred             Hc---------CCcEEEEecCcccCCCCCCc-------------eeeccccccccCCCCHHHHHHHHHHHhc---C----
Q 022216          220 KS---------GINYTIIRPGGLRNEPPTGN-------------IIMETEDTLYEGTISRDQVAEVAVEALL---H----  270 (301)
Q Consensus       220 ~~---------~i~~~~irpg~v~~~~~~~~-------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~---~----  270 (301)
                      +.         .+++++|||..|+||.....             ....+......++++++|+|++++.++.   +    
T Consensus       159 ~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~  238 (280)
T PF01073_consen  159 EANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKP  238 (280)
T ss_pred             hhcccccccccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhcccccc
Confidence            41         28899999999999964221             1112223334568999999999987653   2    


Q ss_pred             CCCCCcEEEeecCCCCCCcC-HHHHHHHhhc
Q 022216          271 PESSYKVVEIISRVDAPKRS-YEDLFGSIKQ  300 (301)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~s-~~e~~~~i~~  300 (301)
                      ....|+.|++.++   +++. +.|+...+.+
T Consensus       239 ~~~~G~~y~itd~---~p~~~~~~f~~~~~~  266 (280)
T PF01073_consen  239 ERVAGQAYFITDG---EPVPSFWDFMRPLWE  266 (280)
T ss_pred             ccCCCcEEEEECC---CccCcHHHHHHHHHH
Confidence            3468999999996   8888 8888866643

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=241.87  Aligned_cols=228  Identities=14%  Similarity=0.204  Sum_probs=175.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      |+||||||+||||++++++|+++ |++|++++|+......+.  ...+++++.+|++++.+.+.+++++ +|+|||+|+.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~-~d~ViH~aa~   78 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV--NHPRMHFFEGDITINKEWIEYHVKK-CDVILPLVAI   78 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc--cCCCeEEEeCCCCCCHHHHHHHHcC-CCEEEECccc
Confidence            68999999999999999999987 699999998765443333  2246899999998426778888888 9999999985


Q ss_pred             CC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhh------cchhhHHHHHHHHHH
Q 022216          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF------LNVFGLTLIAKLQAE  215 (301)
Q Consensus       146 ~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~------~~~~~~y~~sK~~~e  215 (301)
                      ..    ..++...+++|+.++.+++++|++.+ +++||+||..+||...+.+..++..+      .++.+.|+.+|.++|
T Consensus        79 ~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~e  157 (347)
T PRK11908         79 ATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMD  157 (347)
T ss_pred             CChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHHHH
Confidence            43    24566778999999999999999887 79999999999986544333333221      245568999999999


Q ss_pred             HHHH----HcCCcEEEEecCcccCCCCCC---------c--------------eeeccccccccCCCCHHHHHHHHHHHh
Q 022216          216 QYIR----KSGINYTIIRPGGLRNEPPTG---------N--------------IIMETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       216 ~~~~----~~~i~~~~irpg~v~~~~~~~---------~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ++++    +++++++++||+.++||....         .              +...........++|++|++++++.++
T Consensus       158 ~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~  237 (347)
T PRK11908        158 RVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKII  237 (347)
T ss_pred             HHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHH
Confidence            8775    468999999999999986321         0              011111223346999999999999988


Q ss_pred             cCCC--CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          269 LHPE--SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ..+.  ..+++||++++  ...+|++|+++.|.+
T Consensus       238 ~~~~~~~~g~~yni~~~--~~~~s~~e~~~~i~~  269 (347)
T PRK11908        238 ENKDGVASGKIYNIGNP--KNNHSVRELANKMLE  269 (347)
T ss_pred             hCccccCCCCeEEeCCC--CCCcCHHHHHHHHHH
Confidence            8753  45789999873  247999999999864

>PLN02427 UDP-apiose/xylose synthase

Probab=100.00  E-value=9.1e-32  Score=245.77  Aligned_cols=232  Identities=16%  Similarity=0.161  Sum_probs=173.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      .+.|+||||||+||||++++++|+++ |++|++++|+.++...+...    ...+++++.+|++| .+.+.+++.+ +|+
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~-~d~   89 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKH-DSRLEGLIKM-ADL   89 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCC-hHHHHHHhhc-CCE
Confidence            35689999999999999999999998 59999999876654433211    12479999999999 7899999999 999


Q ss_pred             EEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcch---------------h
Q 022216          139 VVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY---------------I  199 (301)
Q Consensus       139 Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~---------------~  199 (301)
                      |||+|+....    .+....+..|+.++.+++++|++.+ ++||++||..+||...+.+..++.               .
T Consensus        90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~  168 (386)
T PLN02427         90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDES  168 (386)
T ss_pred             EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCccccccccccccccccccc
Confidence            9999986432    2233456789999999999999887 799999999999864322111110               0


Q ss_pred             h------cchhhHHHHHHHHHHHHHHH----cCCcEEEEecCcccCCCCCC---------c-----------------ee
Q 022216          200 F------LNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPTG---------N-----------------II  243 (301)
Q Consensus       200 ~------~~~~~~y~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~~---------~-----------------~~  243 (301)
                      +      .++.+.|+.+|.++|+++..    ++++++++||++++||....         .                 +.
T Consensus       169 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  248 (386)
T PLN02427        169 PCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLK  248 (386)
T ss_pred             ccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCeE
Confidence            0      12335799999999988753    68999999999999986320         0                 00


Q ss_pred             eccccccccCCCCHHHHHHHHHHHhcCCC-CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          244 METEDTLYEGTISRDQVAEVAVEALLHPE-SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       244 ~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ..+.......++|++|+|++++.++..+. ..+++||++++  .+.++++|+++.+.+
T Consensus       249 ~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~--~~~~s~~el~~~i~~  304 (386)
T PLN02427        249 LVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNP--NNEVTVRQLAEMMTE  304 (386)
T ss_pred             EECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCC--CCCccHHHHHHHHHH
Confidence            11111222368999999999998888764 35679999973  148999999998864

>PLN02572 UDP-sulfoquinovose synthase

Probab=100.00  E-value=4.9e-32  Score=250.47  Aligned_cols=232  Identities=16%  Similarity=0.153  Sum_probs=170.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-------h----------h---ccccCCCCeEEEEccCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-------K----------T---TLSKDNPSLQIVKADVT  122 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-------~----------~---~~~~~~~~~~~~~~Dl~  122 (301)
                      .+++|+||||||+||||++++++|+++|++|++++|.....       .          .   .......+++++.+|++
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~  123 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC  123 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence            45789999999999999999999999999999987532110       0          0   00001246889999999


Q ss_pred             CChHhHHHHhcC-CCCEEEEccCCCCC----C---CCCCceeeehHHHHHHHHHHHHcCCC-EEEEecccccccccCCCC
Q 022216          123 EGSAKLSEAIGD-DSEAVVCATGFQPG----W---DLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQI  193 (301)
Q Consensus       123 ~~~~~~~~~~~~-~~d~Vi~~Ag~~~~----~---~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~  193 (301)
                      | .+.+.+++++ ++|+|||+|+....    .   ++...+++|+.|+.+++++|++.+++ +||++||..+||.... +
T Consensus       124 d-~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~-~  201 (442)
T PLN02572        124 D-FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNI-D  201 (442)
T ss_pred             C-HHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCC-C
Confidence            9 8889998875 48999999975321    1   12344689999999999999998875 8999999999985421 1


Q ss_pred             CCc-----------ch--hhcchhhHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc---------------
Q 022216          194 LNP-----------AY--IFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------  241 (301)
Q Consensus       194 ~~~-----------~~--~~~~~~~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------  241 (301)
                      ..+           +.  .+..+.+.|+.+|.++|.+++    ++|++++++||+++|||.....               
T Consensus       202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~  281 (442)
T PLN02572        202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGV  281 (442)
T ss_pred             CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccc
Confidence            111           11  134556789999999998764    4699999999999999963210               


Q ss_pred             -----------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCC--cEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          242 -----------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSY--KVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       242 -----------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~--~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                                       +...+......+|++++|++++++.++..+...+  .+||+++    ..++++|+++.|++
T Consensus       282 ~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs----~~~si~el~~~i~~  355 (442)
T PLN02572        282 FGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT----EQFSVNELAKLVTK  355 (442)
T ss_pred             hhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC----CceeHHHHHHHHHH
Confidence                             1111122333479999999999998887653223  5788754    57999999999875

>PLN02214 cinnamoyl-CoA reductase

Probab=100.00  E-value=2e-31  Score=239.57  Aligned_cols=228  Identities=21%  Similarity=0.244  Sum_probs=175.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh----ccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ++|+||||||+||||++++++|+++|++|+++.|+.+....    .......+++++.+|++| .+.+.+++.+ +|+||
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~Vi   86 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQD-YEALKAAIDG-CDGVF   86 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCC-hHHHHHHHhc-CCEEE
Confidence            57899999999999999999999999999999998654221    111112468899999999 8899999999 99999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc-ccccccCCC---CCCcch-----hhcchhhHHHHHH
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI-LVNGAAMGQ---ILNPAY-----IFLNVFGLTLIAK  211 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~-~~~~~~~~~---~~~~~~-----~~~~~~~~y~~sK  211 (301)
                      |+|+... .++...+++|+.|+.+++++|++.++++||++||. ++|+.....   +..++.     .+.++.+.|+.+|
T Consensus        87 h~A~~~~-~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK  165 (342)
T PLN02214         87 HTASPVT-DDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGK  165 (342)
T ss_pred             EecCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHHHHH
Confidence            9998653 45667789999999999999999999999999996 578743221   223331     1233567899999


Q ss_pred             HHHHHHHH----HcCCcEEEEecCcccCCCCCCce----------eecc---ccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          212 LQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI----------IMET---EDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       212 ~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~----------~~~~---~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      .++|+++.    ++|++++++||++++||......          ....   .......|++++|+|++++.+++.+.. 
T Consensus       166 ~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~~~~-  244 (342)
T PLN02214        166 MVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPSA-  244 (342)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhCccc-
Confidence            99998774    35999999999999999643210          0000   011224689999999999999987653 


Q ss_pred             CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          275 YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       275 ~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++.||+++    ...+++|+++.|++
T Consensus       245 ~g~yn~~~----~~~~~~el~~~i~~  266 (342)
T PLN02214        245 SGRYLLAE----SARHRGEVVEILAK  266 (342)
T ss_pred             CCcEEEec----CCCCHHHHHHHHHH
Confidence            45899876    46799999999875

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.98  E-value=4.9e-31  Score=237.84  Aligned_cols=233  Identities=19%  Similarity=0.098  Sum_probs=174.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhcC-CCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi  140 (301)
                      +++|+||||||+||||++++++|+++|++|++++|+.........  ....++.++.+|++| .+.+.+.+++ ++|+||
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~vi   80 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD-AAKLRKAIAEFKPEIVF   80 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCC-HHHHHHHHhhcCCCEEE
Confidence            357999999999999999999999999999999988764332211  122467789999999 8889888886 479999


Q ss_pred             EccCCCC----CCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCC-CCCcchhhcchhhHHHHHHHHH
Q 022216          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQ-ILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       141 ~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~-~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      |+||...    ..++...+++|+.++.++++++++.+ +++||++||..+|+..... +..+ ..+..+.+.|+.+|.++
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e-~~~~~p~~~Y~~sK~~~  159 (349)
T TIGR02622        81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRE-TDPLGGHDPYSSSKACA  159 (349)
T ss_pred             ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCcc-CCCCCCCCcchhHHHHH
Confidence            9998532    23456678999999999999998876 7899999999999764221 2222 22345567899999999


Q ss_pred             HHHHHH-----------cCCcEEEEecCcccCCCCC--Cc--------------eeeccccccccCCCCHHHHHHHHHHH
Q 022216          215 EQYIRK-----------SGINYTIIRPGGLRNEPPT--GN--------------IIMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       215 e~~~~~-----------~~i~~~~irpg~v~~~~~~--~~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      |.+++.           .+++++++||++++||...  +.              +... .......|+|++|++++++.+
T Consensus       160 e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~-~g~~~rd~i~v~D~a~a~~~~  238 (349)
T TIGR02622       160 ELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIR-NPDATRPWQHVLEPLSGYLLL  238 (349)
T ss_pred             HHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEEC-CCCcccceeeHHHHHHHHHHH
Confidence            987753           2899999999999998531  11              1122 233345789999999999877


Q ss_pred             hcCC----CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHP----ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~----~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +...    ...+++||++++++ +.+++.|+++.+.+
T Consensus       239 ~~~~~~~~~~~~~~yni~s~~~-~~~s~~~~~~~i~~  274 (349)
T TIGR02622       239 AEKLFTGQAEFAGAWNFGPRAS-DNARVVELVVDALE  274 (349)
T ss_pred             HHHHhhcCccccceeeeCCCcc-cCcCHHHHHHHHHH
Confidence            6531    12357999987422 68999999987754

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.97  E-value=1.8e-30  Score=231.46  Aligned_cols=229  Identities=20%  Similarity=0.255  Sum_probs=170.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh---ccc--cCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~---~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      ++|+||||||+||||++++++|+++|++|+++.|+......   +..  ....+++++.+|++| .+.+.+++++ +|+|
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~-~d~V   80 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLE-EGSFDSVVDG-CEGV   80 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccC-cchHHHHHcC-CCEE
Confidence            36899999999999999999999999999999988654221   111  113478999999999 7889999999 9999


Q ss_pred             EEccCCCCC--CCCC-CceeeehHHHHHHHHHHHHc-CCCEEEEeccccc--ccccC---CCCCCcchhhc-----chhh
Q 022216          140 VCATGFQPG--WDLF-APWKVDNFGTVNLVEACRKR-GVNRFILISSILV--NGAAM---GQILNPAYIFL-----NVFG  205 (301)
Q Consensus       140 i~~Ag~~~~--~~~~-~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~--~~~~~---~~~~~~~~~~~-----~~~~  205 (301)
                      ||+|+....  .+.. .++++|+.|+.++++++++. ++++||++||.++  |+...   +.+..++.+..     ...+
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~  160 (322)
T PLN02662         81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKL  160 (322)
T ss_pred             EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccc
Confidence            999986432  2332 57789999999999999887 7899999999864  65321   11222322111     1125


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce--e-------ecc---ccccccCCCCHHHHHHHHHHHhc
Q 022216          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI--I-------MET---EDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       206 ~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~--~-------~~~---~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      .|+.+|..+|++++    +++++++++||++++||......  .       ...   .......|+|++|+|++++.++.
T Consensus       161 ~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~  240 (322)
T PLN02662        161 WYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFE  240 (322)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhc
Confidence            79999999998764    46999999999999998643210  0       000   11223468999999999999998


Q ss_pred             CCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          270 HPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       270 ~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .+... ..|++.+    ..++++|+++.+.+
T Consensus       241 ~~~~~-~~~~~~g----~~~s~~e~~~~i~~  266 (322)
T PLN02662        241 IPSAS-GRYCLVE----RVVHYSEVVKILHE  266 (322)
T ss_pred             CcCcC-CcEEEeC----CCCCHHHHHHHHHH
Confidence            76543 4688864    67999999999875

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.97  E-value=2.9e-30  Score=229.77  Aligned_cols=211  Identities=26%  Similarity=0.365  Sum_probs=168.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+||||||||+||++++++|+++|++|+++.|+.++...+.   ..+++++.+|++| .+++.+++.+ +|+|||+++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~---~~~v~~v~~Dl~d-~~~l~~al~g-~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK---EWGAELVYGDLSL-PETLPPSFKG-VTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh---hcCCEEEECCCCC-HHHHHHHHCC-CCEEEECCCCC
Confidence            58999999999999999999999999999999876543322   2478999999999 8999999999 99999998643


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEE
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~  226 (301)
                       ..+...++++|+.++.+++++|++.+++|||++||..++.          +    +...|..+|..+|+++++.+++++
T Consensus        76 -~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~----------~----~~~~~~~~K~~~e~~l~~~~l~~t  140 (317)
T CHL00194         76 -PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ----------Y----PYIPLMKLKSDIEQKLKKSGIPYT  140 (317)
T ss_pred             -CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc----------c----CCChHHHHHHHHHHHHHHcCCCeE
Confidence             2344567789999999999999999999999999964211          0    013467899999999999999999


Q ss_pred             EEecCcccCCCCCC--------ceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHh
Q 022216          227 IIRPGGLRNEPPTG--------NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       227 ~irpg~v~~~~~~~--------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i  298 (301)
                      ++||+.+++.....        ............++++++|+|++++.++..+...+++||++++   +.+|++|+++.+
T Consensus       141 ilRp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~ni~g~---~~~s~~el~~~~  217 (317)
T CHL00194        141 IFRLAGFFQGLISQYAIPILEKQPIWITNESTPISYIDTQDAAKFCLKSLSLPETKNKTFPLVGP---KSWNSSEIISLC  217 (317)
T ss_pred             EEeecHHhhhhhhhhhhhhccCCceEecCCCCccCccCHHHHHHHHHHHhcCccccCcEEEecCC---CccCHHHHHHHH
Confidence            99999887652111        1111111222346899999999999999877767899999995   899999999998


Q ss_pred             hc
Q 022216          299 KQ  300 (301)
Q Consensus       299 ~~  300 (301)
                      .+
T Consensus       218 ~~  219 (317)
T CHL00194        218 EQ  219 (317)
T ss_pred             HH
Confidence            75

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.97  E-value=2.4e-30  Score=234.71  Aligned_cols=226  Identities=18%  Similarity=0.083  Sum_probs=172.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++|+||||||+||||+++++.|+++|++|++++|......   ........++.+|++| .+.+.+.+.+ +|+|||+|+
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~---~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~D~Vih~Aa   94 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM---SEDMFCHEFHLVDLRV-MENCLKVTKG-VDHVFNLAA   94 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc---ccccccceEEECCCCC-HHHHHHHHhC-CCEEEEccc
Confidence            5789999999999999999999999999999998643211   1011236788999999 7888888888 999999997


Q ss_pred             CCCC-----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCC----CCCcch-hhcchhhHHHHHHHHH
Q 022216          145 FQPG-----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ----ILNPAY-IFLNVFGLTLIAKLQA  214 (301)
Q Consensus       145 ~~~~-----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~----~~~~~~-~~~~~~~~y~~sK~~~  214 (301)
                      ....     .++...++.|+.++.+++++|++.++++|||+||..+|+.....    +..++. .+..+.+.|+.+|.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~~~  174 (370)
T PLN02695         95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLAT  174 (370)
T ss_pred             ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHHHHHH
Confidence            5421     23344567899999999999999999999999999999865321    122221 1445677899999999


Q ss_pred             HHHHH----HcCCcEEEEecCcccCCCCCC--------------------ceeeccccccccCCCCHHHHHHHHHHHhcC
Q 022216          215 EQYIR----KSGINYTIIRPGGLRNEPPTG--------------------NIIMETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       215 e~~~~----~~~i~~~~irpg~v~~~~~~~--------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      |++++    ++|++++++||++++||....                    .+.+.+......+++|++|++++++.++..
T Consensus       175 E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~  254 (370)
T PLN02695        175 EELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKS  254 (370)
T ss_pred             HHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhc
Confidence            98764    469999999999999985321                    001111222234689999999999887776


Q ss_pred             CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          271 PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +  .+++||++++   +.++++|+++.+.+
T Consensus       255 ~--~~~~~nv~~~---~~~s~~el~~~i~~  279 (370)
T PLN02695        255 D--FREPVNIGSD---EMVSMNEMAEIALS  279 (370)
T ss_pred             c--CCCceEecCC---CceeHHHHHHHHHH
Confidence            4  3578999986   89999999998864

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.97  E-value=2.4e-30  Score=230.91  Aligned_cols=229  Identities=24%  Similarity=0.326  Sum_probs=170.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh---ccc--cCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~---~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      .+|+||||||+||||++++++|+++|++|+++.|+....+.   ...  ....+++++.+|++| .+.+.+++++ +|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~-~d~v   81 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLE-ESSFEQAIEG-CDAV   81 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCC-cchHHHHHhC-CCEE
Confidence            47899999999999999999999999999999998764332   111  123478999999999 7889999999 9999


Q ss_pred             EEccCCCCC--CCC-CCceeeehHHHHHHHHHHHHc-CCCEEEEecccccc--cccC---CCCCCcchhh-----cchhh
Q 022216          140 VCATGFQPG--WDL-FAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVN--GAAM---GQILNPAYIF-----LNVFG  205 (301)
Q Consensus       140 i~~Ag~~~~--~~~-~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~--~~~~---~~~~~~~~~~-----~~~~~  205 (301)
                      ||+|+....  .+. ...+++|+.|+.++++++++. +++|||++||.++|  +...   +.+..++...     ..+.+
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~  161 (322)
T PLN02986         82 FHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKN  161 (322)
T ss_pred             EEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhcccc
Confidence            999986432  222 346789999999999999885 68899999998764  3211   1112222111     12346


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce------e---eccc---cccccCCCCHHHHHHHHHHHhc
Q 022216          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI------I---METE---DTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       206 ~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~------~---~~~~---~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      .|+.+|..+|++++    +++++++++||++++||......      .   ....   ......+++++|+|++++.++.
T Consensus       162 ~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~  241 (322)
T PLN02986        162 WYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALE  241 (322)
T ss_pred             chHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhc
Confidence            79999999997654    46999999999999998643210      0   0111   1122468999999999999998


Q ss_pred             CCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          270 HPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       270 ~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .+... +.||+.+    +.++++|+++.|++
T Consensus       242 ~~~~~-~~yni~~----~~~s~~e~~~~i~~  267 (322)
T PLN02986        242 TPSAN-GRYIIDG----PIMSVNDIIDILRE  267 (322)
T ss_pred             CcccC-CcEEEec----CCCCHHHHHHHHHH
Confidence            87644 4899843    67999999999875

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.97  E-value=2e-30  Score=251.32  Aligned_cols=230  Identities=15%  Similarity=0.196  Sum_probs=176.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|+||||||+||||++++++|+++ |++|++++|.........  ...+++++.+|++|..+.+.+++.+ +|+|||+
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~--~~~~~~~~~gDl~d~~~~l~~~l~~-~D~ViHl  389 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFL--GHPRFHFVEGDISIHSEWIEYHIKK-CDVVLPL  389 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhc--CCCceEEEeccccCcHHHHHHHhcC-CCEEEEC
Confidence            46789999999999999999999986 799999999775443332  2347899999999833346778888 9999999


Q ss_pred             cCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh-----h-cchhhHHHHHHH
Q 022216          143 TGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI-----F-LNVFGLTLIAKL  212 (301)
Q Consensus       143 Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~-----~-~~~~~~y~~sK~  212 (301)
                      |+....    .++...+++|+.++.+++++|++.+ ++|||+||.++||.....+..++.+     + .++.+.|+.+|.
T Consensus       390 Aa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~  468 (660)
T PRK08125        390 VAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQ  468 (660)
T ss_pred             ccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHHH
Confidence            986442    2344567899999999999999988 7999999999998654334344332     1 134467999999


Q ss_pred             HHHHHHH----HcCCcEEEEecCcccCCCCCC-----------------------ceeeccccccccCCCCHHHHHHHHH
Q 022216          213 QAEQYIR----KSGINYTIIRPGGLRNEPPTG-----------------------NIIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       213 ~~e~~~~----~~~i~~~~irpg~v~~~~~~~-----------------------~~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      ++|++++    .++++++++||++++||....                       .+...+......++++++|++++++
T Consensus       469 ~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~  548 (660)
T PRK08125        469 LLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALF  548 (660)
T ss_pred             HHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHH
Confidence            9998874    468999999999999986421                       0111122233456999999999998


Q ss_pred             HHhcCCC--CCCcEEEeecCCCCC-CcCHHHHHHHhhc
Q 022216          266 EALLHPE--SSYKVVEIISRVDAP-KRSYEDLFGSIKQ  300 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~~~~~~-~~s~~e~~~~i~~  300 (301)
                      .++.++.  ..+++||++++   + .++++|+++.+.+
T Consensus       549 ~~l~~~~~~~~g~iyni~~~---~~~~s~~el~~~i~~  583 (660)
T PRK08125        549 RIIENKDNRCDGQIINIGNP---DNEASIRELAEMLLA  583 (660)
T ss_pred             HHHhccccccCCeEEEcCCC---CCceeHHHHHHHHHH
Confidence            8887653  34779999984   5 6999999999865

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.97  E-value=4.3e-30  Score=229.52  Aligned_cols=229  Identities=24%  Similarity=0.279  Sum_probs=171.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc---cc--cCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~---~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      ++|+||||||+||||++++++|+++|++|+++.|+.......   ..  ....++.++.+|++| .+.+.+++++ +|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~-~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLD-EGSFELAIDG-CETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCC-chHHHHHHcC-CCEE
Confidence            378999999999999999999999999999988887643321   11  112468899999999 7889999998 9999


Q ss_pred             EEccCCCCC----CCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccccccccC-----CCCCCcchhhc-----chh
Q 022216          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAM-----GQILNPAYIFL-----NVF  204 (301)
Q Consensus       140 i~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~-----~~~~~~~~~~~-----~~~  204 (301)
                      |||||....    .++...+++|+.|+.++++++.+. +.++||++||.++|+...     ..+..++.+..     .+.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~  161 (325)
T PLN02989         82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERK  161 (325)
T ss_pred             EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccc
Confidence            999985421    234567799999999999999875 568999999998875432     11222322211     123


Q ss_pred             hHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc--ee-------ecccc---ccccCCCCHHHHHHHHHHHh
Q 022216          205 GLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN--II-------METED---TLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~--~~-------~~~~~---~~~~~~v~~~Dva~~~~~~l  268 (301)
                      +.|+.+|.++|+++.    +++++++++||++++||.....  +.       .....   .....|++++|+|++++.++
T Consensus       162 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l  241 (325)
T PLN02989        162 QWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKAL  241 (325)
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCCCCcCcCeeEHHHHHHHHHHHh
Confidence            579999999998764    4699999999999999875431  10       01111   11236899999999999998


Q ss_pred             cCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          269 LHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ..+.. ++.||+.+    ..++++|+++.|.+
T Consensus       242 ~~~~~-~~~~ni~~----~~~s~~ei~~~i~~  268 (325)
T PLN02989        242 ETPSA-NGRYIIDG----PVVTIKDIENVLRE  268 (325)
T ss_pred             cCccc-CceEEEec----CCCCHHHHHHHHHH
Confidence            87653 45899843    57999999999875

>PLN02650 dihydroflavonol-4-reductase

Probab=99.97  E-value=7.6e-30  Score=230.27  Aligned_cols=229  Identities=20%  Similarity=0.225  Sum_probs=169.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc-----cCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-----KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      +.|+||||||+||||++++++|+++|++|++++|+.+.......     ....++.++.+|++| .+.+.+++.+ +|+|
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d-~~~~~~~~~~-~d~V   81 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAV-EGSFDDAIRG-CTGV   81 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCC-hhhHHHHHhC-CCEE
Confidence            36899999999999999999999999999999998755432111     012358899999999 7889999999 9999


Q ss_pred             EEccCCCCC--CCC-CCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCC-CC-CCcch--------hhcchhh
Q 022216          140 VCATGFQPG--WDL-FAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMG-QI-LNPAY--------IFLNVFG  205 (301)
Q Consensus       140 i~~Ag~~~~--~~~-~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~-~~-~~~~~--------~~~~~~~  205 (301)
                      ||+|+....  .++ ...+++|+.|+.++++++++.+ +++|||+||.++|+.... .+ ..+..        ....+.+
T Consensus        82 iH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (351)
T PLN02650         82 FHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW  161 (351)
T ss_pred             EEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence            999985432  122 3678999999999999999876 789999999977754321 12 12221        0112335


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCcee---------ecccc-----ccccCCCCHHHHHHHHHHH
Q 022216          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNII---------METED-----TLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       206 ~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~~---------~~~~~-----~~~~~~v~~~Dva~~~~~~  267 (301)
                      .|+.+|.++|++++    ++|++++++||++++||.......         .....     ....+|++++|+|++++.+
T Consensus       162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~~  241 (351)
T PLN02650        162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNAHIFL  241 (351)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCccccCcCCCcceeeHHHHHHHHHHH
Confidence            79999999998664    469999999999999996432110         00000     0113689999999999998


Q ss_pred             hcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +..+... ..| ++++   ..+++.|+++.|++
T Consensus       242 l~~~~~~-~~~-i~~~---~~~s~~el~~~i~~  269 (351)
T PLN02650        242 FEHPAAE-GRY-ICSS---HDATIHDLAKMLRE  269 (351)
T ss_pred             hcCcCcC-ceE-EecC---CCcCHHHHHHHHHH
Confidence            8876543 467 4443   77999999999875

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.97  E-value=6.8e-30  Score=230.91  Aligned_cols=228  Identities=16%  Similarity=0.125  Sum_probs=170.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh---hccc-cCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~---~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      |+||||||+||||++++++|+++|++++++.++.....   .... ....++.++.+|++| .+++.+++.+ ++|+|||
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD-RAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcC-hHHHHHHHhhcCCCEEEE
Confidence            68999999999999999999999988665544332211   1111 012367889999999 7889888875 4999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHc---------CCCEEEEecccccccccCC--CCCCcchhhcchhhH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKR---------GVNRFILISSILVNGAAMG--QILNPAYIFLNVFGL  206 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~---------~~~~iV~~SS~~~~~~~~~--~~~~~~~~~~~~~~~  206 (301)
                      |||....    .++..++++|+.|+.++++++++.         ++++||++||.++|+...+  .+..+. .+..+.+.
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-~~~~p~s~  159 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-TPYAPSSP  159 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-CCCCCCCh
Confidence            9986432    245678899999999999999762         4579999999999985422  222232 23445678


Q ss_pred             HHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHH
Q 022216          207 TLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       207 y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      |+.+|.++|.+++    +.+++++++||++++||.....               +...+......+++|++|+++++..+
T Consensus       160 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~  239 (355)
T PRK10217        160 YSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCV  239 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHH
Confidence            9999999997764    4689999999999999874211               11112223345799999999999888


Q ss_pred             hcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +..+. .+++||++++   +.+++.|+++.+.+
T Consensus       240 ~~~~~-~~~~yni~~~---~~~s~~~~~~~i~~  268 (355)
T PRK10217        240 ATTGK-VGETYNIGGH---NERKNLDVVETICE  268 (355)
T ss_pred             HhcCC-CCCeEEeCCC---CcccHHHHHHHHHH
Confidence            87654 4689999996   89999999998764

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.97  E-value=3.8e-30  Score=231.55  Aligned_cols=227  Identities=18%  Similarity=0.109  Sum_probs=173.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-----hhhcccc----CCCCeEEEEccCCCChHhHHHHhcC-CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-----~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~~  136 (301)
                      |+||||||+||||++++++|+++|++|++++|+.+.     ...+...    ...+++++.+|++| .+.+.+++.+ ++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~~~   79 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTD-SSNLRRIIDEIKP   79 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCC-HHHHHHHHHhCCC
Confidence            589999999999999999999999999999988642     1111100    12468999999999 8889999886 47


Q ss_pred             CEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCC---EEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN---RFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       137 d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~---~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      |+|||+|+....    .+....+++|+.|+.+++++|++.+++   +||++||.++||.....+..++ .+..+.+.|+.
T Consensus        80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-~~~~p~~~Y~~  158 (343)
T TIGR01472        80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-TPFYPRSPYAA  158 (343)
T ss_pred             CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-CCCCCCChhHH
Confidence            999999986432    223445678999999999999988753   8999999999986544443333 23456788999


Q ss_pred             HHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHHHHHH
Q 022216          210 AKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       210 sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      +|.++|.+++    ++++++...|+.+++||......                   ...+......+|+|++|+|++++.
T Consensus       159 sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~  238 (343)
T TIGR01472       159 AKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWL  238 (343)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHH
Confidence            9999998774    35888888899888887532110                   111222334578999999999988


Q ss_pred             HhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++..+.  ...||++++   +.+|++|+++.+.+
T Consensus       239 ~~~~~~--~~~yni~~g---~~~s~~e~~~~i~~  267 (343)
T TIGR01472       239 MLQQDK--PDDYVIATG---ETHSVREFVEVSFE  267 (343)
T ss_pred             HHhcCC--CccEEecCC---CceeHHHHHHHHHH
Confidence            887653  358999986   89999999998864

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.97  E-value=1.7e-29  Score=226.83  Aligned_cols=229  Identities=21%  Similarity=0.187  Sum_probs=168.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc---c-cCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---S-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~---~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .+|+||||||+||||++++++|+++|++|+++.|+........   . ....++.++.+|++| .+.+.+.+++ +|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTD-EESFEAPIAG-CDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCC-hHHHHHHHhc-CCEEE
Confidence            4789999999999999999999999999998888865432110   0 011368899999999 7889999998 99999


Q ss_pred             EccCCCCC--CCC-CCceeeehHHHHHHHHHHHHc-CCCEEEEecccccccccC----CCCCCcch--------hhcchh
Q 022216          141 CATGFQPG--WDL-FAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAM----GQILNPAY--------IFLNVF  204 (301)
Q Consensus       141 ~~Ag~~~~--~~~-~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~----~~~~~~~~--------~~~~~~  204 (301)
                      |+|+....  .+. ..++++|+.|+.++++++.+. ++++||++||.++|+...    +.+..+..        ....+.
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~  165 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT  165 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence            99985432  122 235689999999999999876 578999999999997432    11212211        112356


Q ss_pred             hHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce----------------eecc--cccc---ccCCCCHHH
Q 022216          205 GLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI----------------IMET--EDTL---YEGTISRDQ  259 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~----------------~~~~--~~~~---~~~~v~~~D  259 (301)
                      +.|+.+|.++|++++    +++++++++||++++||......                ...+  ..+.   ..+++|++|
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D  245 (338)
T PLN00198        166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVED  245 (338)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcceeEHHH
Confidence            679999999997664    46999999999999999643210                0000  0111   136899999


Q ss_pred             HHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          260 VAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       260 va~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++++++.++..+.. ++.| ++++   ..++++|+++.+.+
T Consensus       246 ~a~a~~~~~~~~~~-~~~~-~~~~---~~~s~~el~~~i~~  281 (338)
T PLN00198        246 VCRAHIFLAEKESA-SGRY-ICCA---ANTSVPELAKFLIK  281 (338)
T ss_pred             HHHHHHHHhhCcCc-CCcE-EEec---CCCCHHHHHHHHHH
Confidence            99999888877643 3457 4443   67899999999865

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.97  E-value=6.6e-30  Score=235.42  Aligned_cols=224  Identities=17%  Similarity=0.197  Sum_probs=169.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh-ccc-cCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-TLS-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~-~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      -+.|+||||||+||||++++++|+++|++|++++|....... ... ....+++++.+|+.+ .     .+.+ +|+|||
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~-~-----~~~~-~D~ViH  190 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVE-P-----ILLE-VDQIYH  190 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECcccc-c-----cccC-CCEEEE
Confidence            356899999999999999999999999999999876432111 100 012467888999987 2     2456 999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcch----hhcchhhHHHHHHHH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKLQ  213 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~----~~~~~~~~y~~sK~~  213 (301)
                      +|+....    .+...++++|+.|+.+++++|++.++ ++|++||.++||.....+..+++    .+..+.+.|+.+|..
T Consensus       191 lAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~  269 (436)
T PLN02166        191 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRT  269 (436)
T ss_pred             CceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHH
Confidence            9985432    24456688999999999999999885 99999999999875544444432    234455779999999


Q ss_pred             HHHHHH----HcCCcEEEEecCcccCCCCC---Cc--------------eeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          214 AEQYIR----KSGINYTIIRPGGLRNEPPT---GN--------------IIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       214 ~e~~~~----~~~i~~~~irpg~v~~~~~~---~~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +|++++    .++++++++||+++||+...   +.              +...+.......|++++|++++++.+++.+.
T Consensus       270 aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~~  349 (436)
T PLN02166        270 AETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEH  349 (436)
T ss_pred             HHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcCC
Confidence            998774    35899999999999998632   11              1111222334568999999999988887543


Q ss_pred             CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          273 SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       273 ~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                        .++||++++   +.++++|+++.|++
T Consensus       350 --~giyNIgs~---~~~Si~ela~~I~~  372 (436)
T PLN02166        350 --VGPFNLGNP---GEFTMLELAEVVKE  372 (436)
T ss_pred             --CceEEeCCC---CcEeHHHHHHHHHH
Confidence              458999986   89999999999875

>PLN02583 cinnamoyl-CoA reductase

Probab=99.97  E-value=3.2e-29  Score=221.06  Aligned_cols=231  Identities=16%  Similarity=0.157  Sum_probs=167.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh--hccc---cCCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--TTLS---KDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~--~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      -++|+||||||+|+||++++++|+++|++|+++.|+.....  +...   ....++.++.+|++| .+.+.+++.+ +|.
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~~~~~l~~-~d~   81 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLD-YHSILDALKG-CSG   81 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCC-HHHHHHHHcC-CCE
Confidence            35789999999999999999999999999999998643211  1111   113468899999999 8899999999 999


Q ss_pred             EEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHc-CCCEEEEeccccccccc---C--CCCCCcchhh-----cchhh
Q 022216          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAA---M--GQILNPAYIF-----LNVFG  205 (301)
Q Consensus       139 Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~---~--~~~~~~~~~~-----~~~~~  205 (301)
                      |+|.++....  .++..++++|+.|+.++++++.+. +++|||++||.+++...   .  ..+.++..+.     .....
T Consensus        82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  161 (297)
T PLN02583         82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKL  161 (297)
T ss_pred             EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhccc
Confidence            9998764332  234567899999999999999876 57899999998765311   1  1122222110     01123


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce-eecc----ccccccCCCCHHHHHHHHHHHhcCCCCCCc
Q 022216          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI-IMET----EDTLYEGTISRDQVAEVAVEALLHPESSYK  276 (301)
Q Consensus       206 ~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~-~~~~----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~  276 (301)
                      .|+.+|..+|+++.    +.++++++|||++++||...... ....    .......+++++|+|++++.+|+.+...+ 
T Consensus       162 ~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~v~V~Dva~a~~~al~~~~~~~-  240 (297)
T PLN02583        162 WHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNPYLKGAAQMYENGVLVTVDVNFLVDAHIRAFEDVSSYG-  240 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchhhhcCCcccCcccCcceEEHHHHHHHHHHHhcCcccCC-
Confidence            69999999998773    46999999999999998653211 1111    01112358999999999999999776544 


Q ss_pred             EEEeecCCCCCCcCHHHHHHHhhc
Q 022216          277 VVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       277 ~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .|.+++.   ....+.++++++.+
T Consensus       241 r~~~~~~---~~~~~~~~~~~~~~  261 (297)
T PLN02583        241 RYLCFNH---IVNTEEDAVKLAQM  261 (297)
T ss_pred             cEEEecC---CCccHHHHHHHHHH
Confidence            7888873   44556778887765

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.97  E-value=4e-29  Score=225.71  Aligned_cols=229  Identities=19%  Similarity=0.228  Sum_probs=167.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+|+||||||+||||++++++|+++|++|++++|+..+...+...  ...+++++.+|++| .+.+.+++.+ +|+|||+
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~-~d~Vih~   86 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQE-EGSFDEAVKG-CDGVFHV   86 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCC-HHHHHHHHcC-CCEEEEC
Confidence            578999999999999999999999999999999886654432211  13568899999999 8889999998 9999999


Q ss_pred             cCCCCC------CCCCCc-----eeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCC-----CCCCcch-hh----
Q 022216          143 TGFQPG------WDLFAP-----WKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMG-----QILNPAY-IF----  200 (301)
Q Consensus       143 Ag~~~~------~~~~~~-----~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~-----~~~~~~~-~~----  200 (301)
                      |+....      .++...     ++.|+.|+.+++++|++.+ +++||++||.++|+....     .+..+.. .+    
T Consensus        87 A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~  166 (353)
T PLN02896         87 AASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHV  166 (353)
T ss_pred             CccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHh
Confidence            986432      123333     3445699999999998875 789999999999985321     1222221 11    


Q ss_pred             ---cchhhHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCcee------e---ccccc---------c---cc
Q 022216          201 ---LNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNII------M---ETEDT---------L---YE  252 (301)
Q Consensus       201 ---~~~~~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~~------~---~~~~~---------~---~~  252 (301)
                         ..+...|+.+|.++|+++.    .++++++++||++++||.....+.      .   .+...         .   ..
T Consensus       167 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  246 (353)
T PLN02896        167 WNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMGSI  246 (353)
T ss_pred             hccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccCce
Confidence               1233479999999998664    469999999999999996543211      0   01000         0   12


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          253 GTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       253 ~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .|++++|+|++++.++..+.. +..|++ ++   ..++++|+++.+++
T Consensus       247 dfi~v~Dva~a~~~~l~~~~~-~~~~~~-~~---~~~s~~el~~~i~~  289 (353)
T PLN02896        247 ALVHIEDICDAHIFLMEQTKA-EGRYIC-CV---DSYDMSELINHLSK  289 (353)
T ss_pred             eEEeHHHHHHHHHHHHhCCCc-CccEEe-cC---CCCCHHHHHHHHHH
Confidence            589999999999999876543 346754 43   78999999999875

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.97  E-value=3.2e-29  Score=225.29  Aligned_cols=229  Identities=15%  Similarity=0.101  Sum_probs=174.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-----hhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-----~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-  134 (301)
                      +++|+||||||+||||++++++|+++|++|++++|+...     .+.+..   ....++.++.+|++| .+.+.+++.+ 
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~   82 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSD-ASSLRRWLDDI   82 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCC-HHHHHHHHHHc
Confidence            457999999999999999999999999999999987542     111110   012468899999999 8888888875 


Q ss_pred             CCCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCC-----EEEEecccccccccCCCCCCcchhhcchhh
Q 022216          135 DSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN-----RFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~-----~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      ++|+|||||+....    .++...+++|+.|+.++++++++.+++     +||++||.++||.... +..++. +..+.+
T Consensus        83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~-~~~p~~  160 (340)
T PLN02653         83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETT-PFHPRS  160 (340)
T ss_pred             CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCC-CCCCCC
Confidence            47999999996432    244556789999999999999988764     8999999999987543 333332 345678


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHH
Q 022216          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAE  262 (301)
Q Consensus       206 ~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~  262 (301)
                      .|+.+|.++|.+++    ++++++...|+.+.++|......                   ...+.......+++++|+|+
T Consensus       161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~  240 (340)
T PLN02653        161 PYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVE  240 (340)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHH
Confidence            89999999998774    46888888888888887432211                   11122233457899999999


Q ss_pred             HHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          263 VAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       263 ~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++.++..+.  +..||++++   +.++++|+++.+.+
T Consensus       241 a~~~~~~~~~--~~~yni~~g---~~~s~~e~~~~i~~  273 (340)
T PLN02653        241 AMWLMLQQEK--PDDYVVATE---ESHTVEEFLEEAFG  273 (340)
T ss_pred             HHHHHHhcCC--CCcEEecCC---CceeHHHHHHHHHH
Confidence            9998887653  467999986   89999999998864

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.97  E-value=2e-29  Score=232.56  Aligned_cols=224  Identities=17%  Similarity=0.190  Sum_probs=168.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc-c-cCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL-S-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~-~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .++|+||||||+||||++++++|+++|++|++++|......+.. . ....+++++.+|+.+ .     .+.+ +|+|||
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~-~-----~l~~-~D~ViH  189 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE-P-----ILLE-VDQIYH  189 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccC-h-----hhcC-CCEEEE
Confidence            36799999999999999999999999999999887543221111 0 023568889999987 3     2356 999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcch----hhcchhhHHHHHHHH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKLQ  213 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~----~~~~~~~~y~~sK~~  213 (301)
                      +|+....    .++...+++|+.|+.+++++|++.++ ++|++||..+|+.....+..+++    .+.++.+.|+.+|.+
T Consensus       190 lAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~  268 (442)
T PLN02206        190 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRT  268 (442)
T ss_pred             eeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHH
Confidence            9985432    24556778999999999999999886 99999999999865444433332    233445789999999


Q ss_pred             HHHHHH----HcCCcEEEEecCcccCCCCC---Cce--------------eeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          214 AEQYIR----KSGINYTIIRPGGLRNEPPT---GNI--------------IMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       214 ~e~~~~----~~~i~~~~irpg~v~~~~~~---~~~--------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +|+++.    +++++++++||++++||...   +.+              ...+......++++++|+|++++.+++.+.
T Consensus       269 aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~~  348 (442)
T PLN02206        269 AETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH  348 (442)
T ss_pred             HHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcCC
Confidence            998774    36899999999999998631   111              111222233468999999999988887553


Q ss_pred             CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          273 SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       273 ~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                        ..+||++++   +.++++|+++.+++
T Consensus       349 --~g~yNIgs~---~~~sl~Elae~i~~  371 (442)
T PLN02206        349 --VGPFNLGNP---GEFTMLELAKVVQE  371 (442)
T ss_pred             --CceEEEcCC---CceeHHHHHHHHHH
Confidence              458999996   89999999998875

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.97  E-value=2.6e-29  Score=220.56  Aligned_cols=209  Identities=22%  Similarity=0.251  Sum_probs=167.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQ  146 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~~  146 (301)
                      +||||||+|+||++++++|+++|++|+++.|.                  .+|+.| .+.+.+++.+ ++|+|||+|+..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------~~d~~~-~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------QLDLTD-PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------ccCCCC-HHHHHHHHHhCCCCEEEECCccc
Confidence            48999999999999999999999999998874                  479999 8899999887 469999999864


Q ss_pred             CCC----CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcC
Q 022216          147 PGW----DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG  222 (301)
Q Consensus       147 ~~~----~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~  222 (301)
                      ...    .+...+++|+.++.++++++++.+. ++|++||.++|+.....+..++.+ ..+.+.|+.+|..+|++++..+
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~~-~~~~~~Y~~~K~~~E~~~~~~~  139 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGKRPYREDDA-TNPLNVYGQSKLAGEQAIRAAG  139 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCCC-CCCcchhhHHHHHHHHHHHHhC
Confidence            321    2344678999999999999998875 899999999997654444444432 3456789999999999998889


Q ss_pred             CcEEEEecCcccCCCCCCcee-------ecc-----ccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcC
Q 022216          223 INYTIIRPGGLRNEPPTGNII-------MET-----EDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       223 i~~~~irpg~v~~~~~~~~~~-------~~~-----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s  290 (301)
                      .+++++||++++|+.....+.       ...     ....+..+++++|+|+++..++..+...+++||++++   +.++
T Consensus       140 ~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~ni~~~---~~~s  216 (287)
T TIGR01214       140 PNALIVRTSWLYGGGGGRNFVRTMLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQRLARARGVYHLANS---GQCS  216 (287)
T ss_pred             CCeEEEEeeecccCCCCCCHHHHHHHHhhcCCCceEecCCCcCCcCHHHHHHHHHHHHhhccCCCCeEEEECC---CCcC
Confidence            999999999999986422110       000     0112346899999999999999876456789999995   8999


Q ss_pred             HHHHHHHhhc
Q 022216          291 YEDLFGSIKQ  300 (301)
Q Consensus       291 ~~e~~~~i~~  300 (301)
                      +.|+++.+.+
T Consensus       217 ~~e~~~~i~~  226 (287)
T TIGR01214       217 WYEFAQAIFE  226 (287)
T ss_pred             HHHHHHHHHH
Confidence            9999999865

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.97  E-value=2.3e-29  Score=222.12  Aligned_cols=212  Identities=13%  Similarity=0.081  Sum_probs=159.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+||||||+||||++++++|+++| +|++++|...              .+.+|++| .+.+.+.+.+ ++|+|||||+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~--------------~~~~Dl~d-~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST--------------DYCGDFSN-PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc--------------cccCCCCC-HHHHHHHHHhcCCCEEEECCcc
Confidence            579999999999999999999999 7888877521              24589999 8889888875 48999999986


Q ss_pred             CCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       146 ~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ...    .++...+++|+.++.+++++|++.++ ++|++||..+|+.....|..++. +..|.+.|+.+|.++|++++.+
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~-~~~P~~~Yg~sK~~~E~~~~~~  142 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETD-ATAPLNVYGETKLAGEKALQEH  142 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCC-CCCCCCHHHHHHHHHHHHHHHh
Confidence            543    23345568999999999999999985 89999999999876555544443 3466788999999999999887


Q ss_pred             CCcEEEEecCcccCCCCCCce-------------eeccc--cccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCC
Q 022216          222 GINYTIIRPGGLRNEPPTGNI-------------IMETE--DTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDA  286 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~~-------------~~~~~--~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~  286 (301)
                      ..+++++||+++|||...+.+             .....  ......+...||+++++..++..+. .+++||++++   
T Consensus       143 ~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~-~~giyni~~~---  218 (299)
T PRK09987        143 CAKHLIFRTSWVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPE-VAGLYHLVAS---  218 (299)
T ss_pred             CCCEEEEecceecCCCCCCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCC-CCCeEEeeCC---
Confidence            778999999999998643211             00000  0000011234556777766665443 3469999996   


Q ss_pred             CCcCHHHHHHHhhc
Q 022216          287 PKRSYEDLFGSIKQ  300 (301)
Q Consensus       287 ~~~s~~e~~~~i~~  300 (301)
                      +.+|+.|+++.|.+
T Consensus       219 ~~~s~~e~~~~i~~  232 (299)
T PRK09987        219 GTTTWHDYAALVFE  232 (299)
T ss_pred             CCccHHHHHHHHHH
Confidence            88999999998743

>PLN02240 UDP-glucose 4-epimerase

Probab=99.97  E-value=5.9e-29  Score=224.48  Aligned_cols=233  Identities=19%  Similarity=0.206  Sum_probs=174.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh----hcc---ccCCCCeEEEEccCCCChHhHHHHhcC-
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK----TTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~----~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-  134 (301)
                      ++++|+||||||+|+||++++++|+++|++|++++|......    ...   .....++.++.+|++| .+.+.+++.+ 
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~l~~~~~~~   80 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD-KEALEKVFAST   80 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC-HHHHHHHHHhC
Confidence            456899999999999999999999999999999987543211    111   1123468899999999 7888888763 


Q ss_pred             CCCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHH
Q 022216          135 DSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~s  210 (301)
                      ++|+|||+|+....    .++...+++|+.++.++++++++.++++||++||..+|+...+.+..++ .+..+...|+.+
T Consensus        81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-~~~~~~~~Y~~s  159 (352)
T PLN02240         81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-FPLSATNPYGRT  159 (352)
T ss_pred             CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-CCCCCCCHHHHH
Confidence            49999999986431    2445578999999999999999988899999999999986544443333 344566789999


Q ss_pred             HHHHHHHHHH-----cCCcEEEEecCcccCCCCC-------Cc-------------------eeec------cccccccC
Q 022216          211 KLQAEQYIRK-----SGINYTIIRPGGLRNEPPT-------GN-------------------IIME------TEDTLYEG  253 (301)
Q Consensus       211 K~~~e~~~~~-----~~i~~~~irpg~v~~~~~~-------~~-------------------~~~~------~~~~~~~~  253 (301)
                      |.++|++++.     .+++++++|+++++|+...       +.                   +...      ........
T Consensus       160 K~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~  239 (352)
T PLN02240        160 KLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRD  239 (352)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEe
Confidence            9999988752     4688999999988885311       00                   0000      01223346


Q ss_pred             CCCHHHHHHHHHHHhcC----CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          254 TISRDQVAEVAVEALLH----PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~----~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++++|+|++++.++..    +...+++||++++   +.++++|+++.+.+
T Consensus       240 ~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~---~~~s~~el~~~i~~  287 (352)
T PLN02240        240 YIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTG---KGTSVLEMVAAFEK  287 (352)
T ss_pred             eEEHHHHHHHHHHHHhhhhhccCCCCceEEccCC---CcEeHHHHHHHHHH
Confidence            89999999998887753    2334679999986   99999999999864

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.97  E-value=4.6e-29  Score=223.94  Aligned_cols=230  Identities=18%  Similarity=0.180  Sum_probs=171.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc----cccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT----LSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      |+||||||+|+||++++++|+++|++|+++.|........    ......++.++.+|++| .+.+.+++.. ++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vvh   79 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALLTEILHDHAIDTVIH   79 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCC-HHHHHHHHhcCCCCEEEE
Confidence            5799999999999999999999999999987653322211    11012457788999999 7888888864 4999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      +|+....    .+....+++|+.++.++++++++.++++||++||..+|+.....+..+..+...+...|+.+|.++|++
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~  159 (338)
T PRK10675         80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQI  159 (338)
T ss_pred             CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHHHH
Confidence            9986432    233456789999999999999999999999999999998654444444433335578899999999988


Q ss_pred             HHH-----cCCcEEEEecCcccCCCCC-----------Cce---------------eecc------ccccccCCCCHHHH
Q 022216          218 IRK-----SGINYTIIRPGGLRNEPPT-----------GNI---------------IMET------EDTLYEGTISRDQV  260 (301)
Q Consensus       218 ~~~-----~~i~~~~irpg~v~~~~~~-----------~~~---------------~~~~------~~~~~~~~v~~~Dv  260 (301)
                      ++.     .+++++++|++.++|+...           ..+               ...+      ......++++++|+
T Consensus       160 ~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~  239 (338)
T PRK10675        160 LTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL  239 (338)
T ss_pred             HHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHHHH
Confidence            753     3789999999888876311           000               0000      11223468999999


Q ss_pred             HHHHHHHhcCC--CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          261 AEVAVEALLHP--ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       261 a~~~~~~l~~~--~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      |++++.++...  ...+++||++++   +.++++|+++.+.+
T Consensus       240 a~~~~~~~~~~~~~~~~~~~ni~~~---~~~s~~e~~~~i~~  278 (338)
T PRK10675        240 ADGHVAAMEKLANKPGVHIYNLGAG---VGSSVLDVVNAFSK  278 (338)
T ss_pred             HHHHHHHHHhhhccCCCceEEecCC---CceeHHHHHHHHHH
Confidence            99998888752  234579999985   89999999998865

>PLN02686 cinnamoyl-CoA reductase

Probab=99.97  E-value=7.1e-29  Score=224.87  Aligned_cols=231  Identities=20%  Similarity=0.215  Sum_probs=171.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--------CCCCeEEEEccCCCChHhHHHHhc
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--------DNPSLQIVKADVTEGSAKLSEAIG  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~~~  133 (301)
                      ..+++|+||||||+||||++++++|+++|++|+++.|+.+..+.+...        ...++.++.+|++| .+.+.+++.
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d-~~~l~~~i~  127 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTE-PESLHEAFD  127 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCC-HHHHHHHHH
Confidence            345689999999999999999999999999999988876544332110        01357899999999 888999999


Q ss_pred             CCCCEEEEccCCCCCC----CCCCceeeehHHHHHHHHHHHHc-CCCEEEEeccc--cccccc--CC--CCCCcch----
Q 022216          134 DDSEAVVCATGFQPGW----DLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSI--LVNGAA--MG--QILNPAY----  198 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~~----~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~--~~~~~~--~~--~~~~~~~----  198 (301)
                      + +|+|||+|+.....    .+....++|+.++.++++++++. +++|||++||.  .+|+..  ..  .+..+..    
T Consensus       128 ~-~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~  206 (367)
T PLN02686        128 G-CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE  206 (367)
T ss_pred             h-ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence            9 99999999864322    12355688999999999999886 79999999996  467642  11  1122211    


Q ss_pred             -hhcchhhHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce------------eeccccccccCCCCHHHHH
Q 022216          199 -IFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI------------IMETEDTLYEGTISRDQVA  261 (301)
Q Consensus       199 -~~~~~~~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~------------~~~~~~~~~~~~v~~~Dva  261 (301)
                       .+..+...|+.+|.++|++++    ++|+++++|||++++||......            ...+ ... ..+++++|+|
T Consensus       207 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~~~~~g-~g~-~~~v~V~Dva  284 (367)
T PLN02686        207 SFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYLKGAQEMLA-DGL-LATADVERLA  284 (367)
T ss_pred             hhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChhHHHHhcCCCccCC-CCC-cCeEEHHHHH
Confidence             123345679999999998774    46999999999999999642210            0001 111 2489999999


Q ss_pred             HHHHHHhcCC--CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          262 EVAVEALLHP--ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       262 ~~~~~~l~~~--~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++++.+++.+  ...+++| ++++   +.++++|+++.|.+
T Consensus       285 ~A~~~al~~~~~~~~~~~y-i~~g---~~~s~~e~~~~i~~  321 (367)
T PLN02686        285 EAHVCVYEAMGNKTAFGRY-ICFD---HVVSREDEAEELAR  321 (367)
T ss_pred             HHHHHHHhccCCCCCCCcE-EEeC---CCccHHHHHHHHHH
Confidence            9999998753  2345677 7775   88999999999875

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=8e-29  Score=207.66  Aligned_cols=227  Identities=18%  Similarity=0.098  Sum_probs=179.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCC-----chhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDL-----DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~  138 (301)
                      |++|||||+||||+++++.++++..  +|++++.-.     +.+..+.  ..++..++++|+.| .+.+.+.+++ ++|+
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~--~~~~~~fv~~DI~D-~~~v~~~~~~~~~D~   77 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVE--DSPRYRFVQGDICD-RELVDRLFKEYQPDA   77 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhh--cCCCceEEeccccC-HHHHHHHHHhcCCCe
Confidence            5899999999999999999999864  466665431     2222222  45799999999999 8999999985 5999


Q ss_pred             EEEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecccccccccCCC-CCCcchhhcchhhHHHHHHH
Q 022216          139 VVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQ-ILNPAYIFLNVFGLTLIAKL  212 (301)
Q Consensus       139 Vi~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~-~~~~~~~~~~~~~~y~~sK~  212 (301)
                      |+|.|+=.+    -.++..++++|+.||++|++++++...+ ||+++|+--|||+.... +.-.+..+.+|.++|.+||+
T Consensus        78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKA  157 (340)
T COG1088          78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKA  157 (340)
T ss_pred             EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhh
Confidence            999998443    2467788999999999999999998754 99999999999987653 22334455667788889999


Q ss_pred             HHHHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          213 QAEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       213 ~~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      .++.+++    .+|+++++.|+.+-|||.....               +.+-+.......|++++|-++++...|.....
T Consensus       158 asD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~~  237 (340)
T COG1088         158 ASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGKI  237 (340)
T ss_pred             hHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCcC
Confidence            9987665    5899999999999999954322               22334445556799999999999888887764


Q ss_pred             CCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          274 SYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       274 ~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                       |++|||+++   ...+-.|+++.|++
T Consensus       238 -GE~YNIgg~---~E~~Nlevv~~i~~  260 (340)
T COG1088         238 -GETYNIGGG---NERTNLEVVKTICE  260 (340)
T ss_pred             -CceEEeCCC---ccchHHHHHHHHHH
Confidence             999999996   77788888888765

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.96  E-value=3.2e-28  Score=221.92  Aligned_cols=218  Identities=25%  Similarity=0.335  Sum_probs=169.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc-----cccCCCCeEEEEccCCCChHhHHHHhcC---C
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKADVTEGSAKLSEAIGD---D  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~-----~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---~  135 (301)
                      .++++||||||+|+||++++++|+++|++|+++.|+..+....     ......+++++.+|++| .+.+.+++.+   +
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~~~  136 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD-ADSLRKVLFSEGDP  136 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC-HHHHHHHHHHhCCC
Confidence            4578999999999999999999999999999999987543210     00123578999999999 8889888873   3


Q ss_pred             CCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH
Q 022216          136 SEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (301)
                      +|+||||++.... .....+++|+.++.++++++++.++++||++||.++|+               +...|..+|...|
T Consensus       137 ~D~Vi~~aa~~~~-~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~---------------p~~~~~~sK~~~E  200 (390)
T PLN02657        137 VDVVVSCLASRTG-GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK---------------PLLEFQRAKLKFE  200 (390)
T ss_pred             CcEEEECCccCCC-CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC---------------cchHHHHHHHHHH
Confidence            9999999985332 23456789999999999999999999999999987652               1244678999999


Q ss_pred             HHHHH--cCCcEEEEecCcccCCCC-------CCc-eeeccccc-cccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 022216          216 QYIRK--SGINYTIIRPGGLRNEPP-------TGN-IIMETEDT-LYEGTISRDQVAEVAVEALLHPESSYKVVEIISRV  284 (301)
Q Consensus       216 ~~~~~--~~i~~~~irpg~v~~~~~-------~~~-~~~~~~~~-~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~  284 (301)
                      +.++.  .++++++|||+.++++..       .+. +.+.+... ....+++++|+|++++.++.++...+++||++++ 
T Consensus       201 ~~l~~~~~gl~~tIlRp~~~~~~~~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~~~~~~~Iggp-  279 (390)
T PLN02657        201 AELQALDSDFTYSIVRPTAFFKSLGGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESKINKVLPIGGP-  279 (390)
T ss_pred             HHHHhccCCCCEEEEccHHHhcccHHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccccCCEEEcCCC-
Confidence            88875  899999999999987532       111 11222222 2234699999999999988777666789999873 


Q ss_pred             CCCCcCHHHHHHHhhc
Q 022216          285 DAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       285 ~~~~~s~~e~~~~i~~  300 (301)
                       ++.+|++|+++.+.+
T Consensus       280 -~~~~S~~Eia~~l~~  294 (390)
T PLN02657        280 -GKALTPLEQGEMLFR  294 (390)
T ss_pred             -CcccCHHHHHHHHHH
Confidence             268999999999865

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.96  E-value=3.5e-28  Score=225.35  Aligned_cols=228  Identities=36%  Similarity=0.574  Sum_probs=175.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc------------CCCCeEEEEccCCCChHhHHH
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------------DNPSLQIVKADVTEGSAKLSE  130 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~------------~~~~~~~~~~Dl~~~~~~~~~  130 (301)
                      ...+++||||||+|+||++++++|+++|++|++++|+.++...+...            ...++.++.+|++| .+.+.+
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD-~esI~~  155 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK-PDQIGP  155 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC-HHHHHH
Confidence            34689999999999999999999999999999999998776543210            11358899999999 889999


Q ss_pred             HhcCCCCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          131 AIGDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       131 ~~~~~~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      ++++ +|+||||+|....  .++...+++|+.|+.++++++++.+++|||++||.+++..  +.+.. .   ......|.
T Consensus       156 aLgg-iDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~--g~p~~-~---~~sk~~~~  228 (576)
T PLN03209        156 ALGN-ASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKV--GFPAA-I---LNLFWGVL  228 (576)
T ss_pred             HhcC-CCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhccc--Ccccc-c---hhhHHHHH
Confidence            9999 9999999986532  2455667899999999999999999999999999875311  11111 1   12345577


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCcccCCCCC----CceeeccccccccCCCCHHHHHHHHHHHhcCCC-CCCcEEEeecC
Q 022216          209 IAKLQAEQYIRKSGINYTIIRPGGLRNEPPT----GNIIMETEDTLYEGTISRDQVAEVAVEALLHPE-SSYKVVEIISR  283 (301)
Q Consensus       209 ~sK~~~e~~~~~~~i~~~~irpg~v~~~~~~----~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~v~~~  283 (301)
                      ..|..+|+++++.|++|++||||++.+++..    +.+.....+....+.+.++|||++++.++.++. ..++++++..+
T Consensus       229 ~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~~~~t~~v~~~~~d~~~gr~isreDVA~vVvfLasd~~as~~kvvevi~~  308 (576)
T PLN03209        229 CWKRKAEEALIASGLPYTIVRPGGMERPTDAYKETHNLTLSEEDTLFGGQVSNLQVAELMACMAKNRRLSYCKVVEVIAE  308 (576)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCeecCCccccccccceeeccccccCCCccCHHHHHHHHHHHHcCchhccceEEEEEeC
Confidence            8899999999999999999999999887432    222222222333457899999999988787564 56789999998


Q ss_pred             CCCCCcCHHHHHHHh
Q 022216          284 VDAPKRSYEDLFGSI  298 (301)
Q Consensus       284 ~~~~~~s~~e~~~~i  298 (301)
                      +......+.|+++.|
T Consensus       309 ~~~p~~~~~~~~~~i  323 (576)
T PLN03209        309 TTAPLTPMEELLAKI  323 (576)
T ss_pred             CCCCCCCHHHHHHhc
Confidence            666668888887765

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.1e-28  Score=218.80  Aligned_cols=222  Identities=26%  Similarity=0.305  Sum_probs=173.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCC-CEEEEccCCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDS-EAVVCATGFQ  146 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-d~Vi~~Ag~~  146 (301)
                      .||||||+||||++++++|+++|++|++++|...+.....    .++.++.+|++| .+.+.+...+ . |+|||+|+..
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~d~~~-~~~~~~~~~~-~~d~vih~aa~~   75 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----SGVEFVVLDLTD-RDLVDELAKG-VPDAVIHLAAQS   75 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----cccceeeecccc-hHHHHHHHhc-CCCEEEEccccC
Confidence            4999999999999999999999999999999876654322    578899999999 6778788877 7 9999999865


Q ss_pred             CCCCC-----CCceeeehHHHHHHHHHHHHcCCCEEEEeccccccccc-CCCCCCcchhhcchhhHHHHHHHHHHHHHHH
Q 022216          147 PGWDL-----FAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA-MGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (301)
Q Consensus       147 ~~~~~-----~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~-~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (301)
                      .....     ..++++|+.++.+++++|++.++++|||.||.++|+.. .+.+..++..+..+.+.|+.+|.++|++++.
T Consensus        76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~  155 (314)
T COG0451          76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRA  155 (314)
T ss_pred             chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            53222     23789999999999999999889999998888877654 2223333323445555899999999998764


Q ss_pred             ----cCCcEEEEecCcccCCCCCCc----ee------ec-cc--------cccccCCCCHHHHHHHHHHHhcCCCCCCcE
Q 022216          221 ----SGINYTIIRPGGLRNEPPTGN----II------ME-TE--------DTLYEGTISRDQVAEVAVEALLHPESSYKV  277 (301)
Q Consensus       221 ----~~i~~~~irpg~v~~~~~~~~----~~------~~-~~--------~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~  277 (301)
                          .+++++++||++++||.....    ..      .. ..        ......+++++|++++++.+++.+...  .
T Consensus       156 ~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~--~  233 (314)
T COG0451         156 YARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGG--V  233 (314)
T ss_pred             HHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCCc--E
Confidence                469999999999999875543    11      01 11        111124789999999999999887654  8


Q ss_pred             EEeecCCCCC-CcCHHHHHHHhhc
Q 022216          278 VEIISRVDAP-KRSYEDLFGSIKQ  300 (301)
Q Consensus       278 ~~v~~~~~~~-~~s~~e~~~~i~~  300 (301)
                      ||+.++   . ..+++|+++.+.+
T Consensus       234 ~ni~~~---~~~~~~~e~~~~~~~  254 (314)
T COG0451         234 FNIGSG---TAEITVRELAEAVAE  254 (314)
T ss_pred             EEeCCC---CCcEEHHHHHHHHHH
Confidence            999985   5 8999999998864

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.96  E-value=1.9e-28  Score=221.16  Aligned_cols=229  Identities=16%  Similarity=0.101  Sum_probs=168.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCC--chhhhccc-cCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDL--DKAKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~--~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      |+||||||+||||++++++|+++|++ |+++++..  ........ ....+++++.+|++| .+++.+++.+ ++|+|||
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICD-RAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCC-HHHHHHHHHhcCCCEEEE
Confidence            57999999999999999999999976 44444432  11111111 013467889999999 8889888864 4999999


Q ss_pred             ccCCCC----CCCCCCceeeehHHHHHHHHHHHHc---------CCCEEEEecccccccccCC---------CCCCcchh
Q 022216          142 ATGFQP----GWDLFAPWKVDNFGTVNLVEACRKR---------GVNRFILISSILVNGAAMG---------QILNPAYI  199 (301)
Q Consensus       142 ~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~---------~~~~iV~~SS~~~~~~~~~---------~~~~~~~~  199 (301)
                      +||...    ..++...+++|+.|+.+++++|++.         +++++|++||.++|+....         .+...+..
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~  159 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT  159 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC
Confidence            998643    2345778999999999999999864         4569999999999985321         01111122


Q ss_pred             hcchhhHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQV  260 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dv  260 (301)
                      +..+.+.|+.+|.++|++++    .++++++++||+.++||.....               +...+......++++++|+
T Consensus       160 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~  239 (352)
T PRK10084        160 AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDH  239 (352)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHH
Confidence            34567889999999998764    4689999999999999864211               1111222334568999999


Q ss_pred             HHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          261 AEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       261 a~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      |+++..++..+. .+++||++++   +.+++.|+++.+++
T Consensus       240 a~a~~~~l~~~~-~~~~yni~~~---~~~s~~~~~~~i~~  275 (352)
T PRK10084        240 ARALYKVVTEGK-AGETYNIGGH---NEKKNLDVVLTICD  275 (352)
T ss_pred             HHHHHHHHhcCC-CCceEEeCCC---CcCcHHHHHHHHHH
Confidence            999988887643 5789999986   88999999887754

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.96  E-value=3e-29  Score=213.62  Aligned_cols=209  Identities=28%  Similarity=0.359  Sum_probs=169.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCCCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQP  147 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~~~  147 (301)
                      ||||||+|+||++++++|+++|+.|+.+.|+.........  ..++.++.+|+.| .+.+.+++.. ++|+|||+|+...
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~dl~~-~~~~~~~~~~~~~d~vi~~a~~~~   77 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEK--KLNVEFVIGDLTD-KEQLEKLLEKANIDVVIHLAAFSS   77 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHH--HTTEEEEESETTS-HHHHHHHHHHHTESEEEEEBSSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccc--cceEEEEEeeccc-cccccccccccCceEEEEeecccc
Confidence            7999999999999999999999999988888765433221  1289999999999 8999998887 4699999998752


Q ss_pred             ----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH---
Q 022216          148 ----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK---  220 (301)
Q Consensus       148 ----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~---  220 (301)
                          ..+....++.|+.++.++++++++.+++++|++||..+|+.....+..++... .+.+.|+.+|...|++++.   
T Consensus        78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~-~~~~~Y~~~K~~~e~~~~~~~~  156 (236)
T PF01370_consen   78 NPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPI-NPLSPYGASKRAAEELLRDYAK  156 (236)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGC-CHSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence                12445677899999999999999999899999999999998855554554444 7778899999999987753   


Q ss_pred             -cCCcEEEEecCcccCCC----CCCc--------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEee
Q 022216          221 -SGINYTIIRPGGLRNEP----PTGN--------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEII  281 (301)
Q Consensus       221 -~~i~~~~irpg~v~~~~----~~~~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~  281 (301)
                       .+++++++||+.++|+.    ....              +..........++++++|+|++++.++.++...+++|||+
T Consensus       157 ~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~yNig  236 (236)
T PF01370_consen  157 KYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKAAGGIYNIG  236 (236)
T ss_dssp             HHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCTTTEEEEES
T ss_pred             ccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence             58999999999999998    1111              1222233345578999999999999999887778999985

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.96  E-value=1.3e-28  Score=239.60  Aligned_cols=230  Identities=19%  Similarity=0.203  Sum_probs=173.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCC--chhhhccc-cCCCCeEEEEccCCCChHhHHHHh--cCCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDL--DKAKTTLS-KDNPSLQIVKADVTEGSAKLSEAI--GDDSE  137 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~--~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--~~~~d  137 (301)
                      ++|+||||||+||||++++++|+++  |++|++++|..  +....+.. ....+++++.+|++| .+.+...+  .+ +|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~-~D   82 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIAS-ADLVNYLLITEG-ID   82 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCC-hHHHHHHHhhcC-CC
Confidence            4789999999999999999999998  68999888753  22222111 123578999999999 77777665  45 99


Q ss_pred             EEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCC--CcchhhcchhhHHHHH
Q 022216          138 AVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQIL--NPAYIFLNVFGLTLIA  210 (301)
Q Consensus       138 ~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~--~~~~~~~~~~~~y~~s  210 (301)
                      +|||+|+....    .+...++++|+.|+.++++++++.+ +++||++||..+||.....+.  ..+..+..+.+.|+.+
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~s  162 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSAT  162 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHH
Confidence            99999996542    2234567899999999999999987 789999999999986543321  1122233456789999


Q ss_pred             HHHHHHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          211 KLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       211 K~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      |.++|++++    +++++++++||+++||+.....               +...+......+++|++|+|+++..++..+
T Consensus       163 K~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~  242 (668)
T PLN02260        163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKG  242 (668)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcC
Confidence            999998875    3689999999999999864321               111122233346899999999998888655


Q ss_pred             CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          272 ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      . .+++||++++   +.+++.|+++.+++
T Consensus       243 ~-~~~vyni~~~---~~~s~~el~~~i~~  267 (668)
T PLN02260        243 E-VGHVYNIGTK---KERRVIDVAKDICK  267 (668)
T ss_pred             C-CCCEEEECCC---CeeEHHHHHHHHHH
Confidence            3 4679999985   89999999998875

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.96  E-value=1.9e-28  Score=218.67  Aligned_cols=214  Identities=21%  Similarity=0.299  Sum_probs=163.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      +++|+||||||+||||++++++|+++|  ++|++++|+......+... ...++.++.+|++| .+.+.+++++ +|+||
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d-~~~l~~~~~~-iD~Vi   79 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRD-KERLTRALRG-VDYVV   79 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHhc-CCEEE
Confidence            357999999999999999999999986  7899988876543322111 12468899999999 8999999999 99999


Q ss_pred             EccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHH
Q 022216          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQ  216 (301)
Q Consensus       141 ~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~  216 (301)
                      |+||....    .++..++++|+.|+.++++++++.++++||++||...+               .|.+.|+.+|.++|+
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~~---------------~p~~~Y~~sK~~~E~  144 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAA---------------NPINLYGATKLASDK  144 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC---------------CCCCHHHHHHHHHHH
Confidence            99986431    23346789999999999999999988999999996311               224679999999998


Q ss_pred             HHH-------HcCCcEEEEecCcccCCCCC-----------Cc--eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCc
Q 022216          217 YIR-------KSGINYTIIRPGGLRNEPPT-----------GN--IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYK  276 (301)
Q Consensus       217 ~~~-------~~~i~~~~irpg~v~~~~~~-----------~~--~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~  276 (301)
                      +++       ..|++++++|||+++|+...           +.  +... .......|++++|++++++.++.... .++
T Consensus       145 l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~~i~~~~~~~~~~~~~~~i~-~~~~~r~~i~v~D~a~a~~~al~~~~-~~~  222 (324)
T TIGR03589       145 LFVAANNISGSKGTRFSVVRYGNVVGSRGSVVPFFKSLKEEGVTELPIT-DPRMTRFWITLEQGVNFVLKSLERML-GGE  222 (324)
T ss_pred             HHHHHHhhccccCcEEEEEeecceeCCCCCcHHHHHHHHHhCCCCeeeC-CCCceEeeEEHHHHHHHHHHHHhhCC-CCC
Confidence            763       36899999999999997421           10  1111 12223458999999999999987643 456


Q ss_pred             EEEeecCCCCCCcCHHHHHHHhhc
Q 022216          277 VVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       277 ~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +| +..+   ..+++.|+++.+.+
T Consensus       223 ~~-~~~~---~~~sv~el~~~i~~  242 (324)
T TIGR03589       223 IF-VPKI---PSMKITDLAEAMAP  242 (324)
T ss_pred             EE-ccCC---CcEEHHHHHHHHHh
Confidence            66 3442   67999999998865

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.96  E-value=2.7e-28  Score=216.60  Aligned_cols=226  Identities=19%  Similarity=0.113  Sum_probs=170.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCc--h---hhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEE
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLD--K---AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAV  139 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~--~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~V  139 (301)
                      +||||||+|+||++++++|+++|  ++|++++|...  .   .+...  ...++.++.+|++| .+++.+++++ ++|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE--DNPRYRFVKGDIGD-RELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc--cCCCcEEEEcCCcC-HHHHHHHHhhcCCCEE
Confidence            58999999999999999999987  78988876421  1   11111  12468899999999 8888888876 58999


Q ss_pred             EEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHH
Q 022216          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       140 i~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      ||+|+....    .++..++++|+.++.++++++++.+.+ ++|++||..+|+.........+..+..+...|+.+|..+
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~  157 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAAS  157 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHHH
Confidence            999986432    345567899999999999999887543 899999999998654321112223345567899999999


Q ss_pred             HHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          215 EQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       215 e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      |.+++    +.+++++++||+.++|+.....               +..........+++|++|+|+++..++.+.. .+
T Consensus       158 e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~~-~~  236 (317)
T TIGR01181       158 DHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKGR-VG  236 (317)
T ss_pred             HHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCCC-CC
Confidence            98764    4689999999999999864211               1111122233468999999999988887653 56


Q ss_pred             cEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          276 KVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       276 ~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++||++++   +.+++.|+++.|.+
T Consensus       237 ~~~~~~~~---~~~s~~~~~~~i~~  258 (317)
T TIGR01181       237 ETYNIGGG---NERTNLEVVETILE  258 (317)
T ss_pred             ceEEeCCC---CceeHHHHHHHHHH
Confidence            89999985   88999999999875

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.96  E-value=1.1e-28  Score=218.86  Aligned_cols=217  Identities=17%  Similarity=0.219  Sum_probs=157.4

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHh-HHHHhc-----CCCCEEE
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAK-LSEAIG-----DDSEAVV  140 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~-~~~~~~-----~~~d~Vi  140 (301)
                      ||||||+||||++++++|+++|++++++.|+.......       ..+..+|+.|.  .+. +.+.+.     + +|+||
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~d~Vi   73 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-------VNLVDLDIADYMDKEDFLAQIMAGDDFGD-IEAIF   73 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-------HhhhhhhhhhhhhHHHHHHHHhcccccCC-ccEEE
Confidence            79999999999999999999999877777665432110       11234566551  223 333332     4 99999


Q ss_pred             EccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH
Q 022216          141 CATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (301)
Q Consensus       141 ~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (301)
                      |+||....  .+....+++|+.++.+++++|++.++ ++|++||.++|+.....+..+ ..+.+|.+.|+.+|.++|+++
T Consensus        74 h~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E-~~~~~p~~~Y~~sK~~~E~~~  151 (308)
T PRK11150         74 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEE-REYEKPLNVYGYSKFLFDEYV  151 (308)
T ss_pred             ECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCcc-CCCCCCCCHHHHHHHHHHHHH
Confidence            99985332  23334678999999999999999887 799999999998754433322 234456678999999999877


Q ss_pred             HH----cCCcEEEEecCcccCCCCCCc--e------------------eeccccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          219 RK----SGINYTIIRPGGLRNEPPTGN--I------------------IMETEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       219 ~~----~~i~~~~irpg~v~~~~~~~~--~------------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      +.    .+++++++||++++|+.....  +                  ...+.......++|++|+|++++.++..+.  
T Consensus       152 ~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~--  229 (308)
T PRK11150        152 RQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGV--  229 (308)
T ss_pred             HHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCC--
Confidence            53    589999999999999864221  0                  001111223468999999999988887653  


Q ss_pred             CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          275 YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       275 ~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++||++++   +.+++.|+++.+.+
T Consensus       230 ~~~yni~~~---~~~s~~el~~~i~~  252 (308)
T PRK11150        230 SGIFNCGTG---RAESFQAVADAVLA  252 (308)
T ss_pred             CCeEEcCCC---CceeHHHHHHHHHH
Confidence            469999996   88999999999875

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.96  E-value=3.7e-28  Score=216.92  Aligned_cols=224  Identities=22%  Similarity=0.224  Sum_probs=172.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+||||||+|+||++++++|+++|++|++++|+++......   ..+++++.+|++| .+++.+++.+ +|+|||+|+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~D~~~-~~~l~~~~~~-~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLE---GLDVEIVEGDLRD-PASLRKAVAG-CRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccc---cCCceEEEeeCCC-HHHHHHHHhC-CCEEEEeceec
Confidence            57999999999999999999999999999999876543322   2468899999999 8899999999 99999999754


Q ss_pred             C--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccccc-CCCCCCcchhh--cchhhHHHHHHHHHHHHHHH-
Q 022216          147 P--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA-MGQILNPAYIF--LNVFGLTLIAKLQAEQYIRK-  220 (301)
Q Consensus       147 ~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~-~~~~~~~~~~~--~~~~~~y~~sK~~~e~~~~~-  220 (301)
                      .  ..++...+++|+.++.++++++++.++++||++||..+|+.. .+.+..++.+.  ....+.|+.+|.++|+++++ 
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~  155 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEM  155 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHHHHHHHHHHH
Confidence            2  234556788999999999999999988999999999999853 23333333221  12246799999999987754 


Q ss_pred             ---cCCcEEEEecCcccCCCCCCc-----eee-------ccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCC
Q 022216          221 ---SGINYTIIRPGGLRNEPPTGN-----IIM-------ETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVD  285 (301)
Q Consensus       221 ---~~i~~~~irpg~v~~~~~~~~-----~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~  285 (301)
                         .+++++++||+.++|+.....     +..       .........+++++|+|++++.++..+. .+..|++.+   
T Consensus       156 ~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~-~~~~~~~~~---  231 (328)
T TIGR03466       156 AAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGR-IGERYILGG---  231 (328)
T ss_pred             HHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCCC-CCceEEecC---
Confidence               589999999999999864321     000       0000112357899999999998887754 566787743   


Q ss_pred             CCCcCHHHHHHHhhc
Q 022216          286 APKRSYEDLFGSIKQ  300 (301)
Q Consensus       286 ~~~~s~~e~~~~i~~  300 (301)
                       +.+++.|+++.+.+
T Consensus       232 -~~~s~~e~~~~i~~  245 (328)
T TIGR03466       232 -ENLTLKQILDKLAE  245 (328)
T ss_pred             -CCcCHHHHHHHHHH
Confidence             78999999998864

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.96  E-value=6.7e-28  Score=213.36  Aligned_cols=209  Identities=17%  Similarity=0.134  Sum_probs=160.8

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCCCC-
Q 022216           70 FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQP-  147 (301)
Q Consensus        70 lVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~~~-  147 (301)
                      |||||+||||+++++.|+++|++|+++.+.                 ..+|++| .+.+.+.+.. ++|+|||||+... 
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------~~~Dl~~-~~~l~~~~~~~~~d~Vih~A~~~~~   62 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------KELDLTR-QADVEAFFAKEKPTYVILAAAKVGG   62 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------ccCCCCC-HHHHHHHHhccCCCEEEEeeeeecc
Confidence            699999999999999999999988765322                 1489999 7888888875 4899999998632 


Q ss_pred             ----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh---hcchh-hHHHHHHHHHHHHHH
Q 022216          148 ----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI---FLNVF-GLTLIAKLQAEQYIR  219 (301)
Q Consensus       148 ----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~---~~~~~-~~y~~sK~~~e~~~~  219 (301)
                          ..++...+++|+.++.+++++|++.+++++|++||..+|+.....+..++..   +..+. ..|+.+|.++|++++
T Consensus        63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~  142 (306)
T PLN02725         63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQ  142 (306)
T ss_pred             cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHHHHHHH
Confidence                1345567889999999999999999999999999999998765555554431   22333 359999999997653


Q ss_pred             ----HcCCcEEEEecCcccCCCCCC-----ce------------------ee-ccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          220 ----KSGINYTIIRPGGLRNEPPTG-----NI------------------IM-ETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       220 ----~~~i~~~~irpg~v~~~~~~~-----~~------------------~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                          ..+++++++||+.++|+....     .+                  .. .........++|++|++++++.++..+
T Consensus       143 ~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~  222 (306)
T PLN02725        143 AYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRY  222 (306)
T ss_pred             HHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhcc
Confidence                468999999999999986321     00                  01 111233346899999999998888765


Q ss_pred             CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          272 ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      . ..+.||++++   +.+++.|+++.+++
T Consensus       223 ~-~~~~~ni~~~---~~~s~~e~~~~i~~  247 (306)
T PLN02725        223 S-GAEHVNVGSG---DEVTIKELAELVKE  247 (306)
T ss_pred             c-cCcceEeCCC---CcccHHHHHHHHHH
Confidence            3 3457888875   89999999999875

>PLN00016 RNA-binding protein; Provisional

Probab=99.96  E-value=3e-27  Score=215.35  Aligned_cols=213  Identities=15%  Similarity=0.192  Sum_probs=161.4

Q ss_pred             cCCeEEEE----cCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc-------c-CCCCeEEEEccCCCChHhHHHHh
Q 022216           65 KQKKIFVA----GATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-------K-DNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        65 ~~~~vlVt----GatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~-------~-~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      .+++||||    ||+|+||++++++|+++|++|+++.|+.........       + ...+++++.+|+.| .+.+. ..
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~~~-~~  128 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD-VKSKV-AG  128 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH-HHhhh-cc
Confidence            35789999    999999999999999999999999998764322110       0 12358899999987 33332 22


Q ss_pred             cCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHH
Q 022216          133 GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKL  212 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~  212 (301)
                      .+ +|+|||+++.            +..++.+++++|++.|+++||++||..+|+.....+..+.. +.++..    +|.
T Consensus       129 ~~-~d~Vi~~~~~------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~-~~~p~~----sK~  190 (378)
T PLN00016        129 AG-FDVVYDNNGK------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGD-AVKPKA----GHL  190 (378)
T ss_pred             CC-ccEEEeCCCC------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCC-cCCCcc----hHH
Confidence            35 9999999752            25678999999999999999999999999865444433321 122222    799


Q ss_pred             HHHHHHHHcCCcEEEEecCcccCCCCCCc--------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEE
Q 022216          213 QAEQYIRKSGINYTIIRPGGLRNEPPTGN--------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVV  278 (301)
Q Consensus       213 ~~e~~~~~~~i~~~~irpg~v~~~~~~~~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~  278 (301)
                      .+|+++++.+++++++||++++|+.....              +..........+++|++|+|++++.++.++...+++|
T Consensus       191 ~~E~~l~~~~l~~~ilRp~~vyG~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~~y  270 (378)
T PLN00016        191 EVEAYLQKLGVNWTSFRPQYIYGPGNNKDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKAAGQIF  270 (378)
T ss_pred             HHHHHHHHcCCCeEEEeceeEECCCCCCchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccccCCEE
Confidence            99999999999999999999999854321              1111222333468999999999999998876567899


Q ss_pred             EeecCCCCCCcCHHHHHHHhhc
Q 022216          279 EIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       279 ~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      |++++   +.+++.|+++.|.+
T Consensus       271 ni~~~---~~~s~~el~~~i~~  289 (378)
T PLN00016        271 NIVSD---RAVTFDGMAKACAK  289 (378)
T ss_pred             EecCC---CccCHHHHHHHHHH
Confidence            99985   89999999999875

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=1.7e-27  Score=202.53  Aligned_cols=231  Identities=19%  Similarity=0.202  Sum_probs=183.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc----hhhhccc--cCCCCeEEEEccCCCChHhHHHHhcC-CCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD----KAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGD-DSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~----~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~  138 (301)
                      +++||||||+||||+|++.+|+++|+.|++++.-..    .+.....  .....+.++++|++| .+.+++.|+. ++|.
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D-~~~L~kvF~~~~fd~   80 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLND-AEALEKLFSEVKFDA   80 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCC-HHHHHHHHhhcCCce
Confidence            579999999999999999999999999999875332    2221111  134789999999999 8999999988 8999


Q ss_pred             EEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHH
Q 022216          139 VVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       139 Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      |+|.|+....    +++..++.+|+.|+.++++++++++++.+||.||+.+||.....|..+..+...|.+.|+.+|..+
T Consensus        81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~i  160 (343)
T KOG1371|consen   81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAI  160 (343)
T ss_pred             EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHH
Confidence            9999986542    567889999999999999999999999999999999999988877776665556889999999999


Q ss_pred             HHHHHH----cCCcEEEEecCcccCCCCCCcee----------e----------------------ccccccccCCCCHH
Q 022216          215 EQYIRK----SGINYTIIRPGGLRNEPPTGNII----------M----------------------ETEDTLYEGTISRD  258 (301)
Q Consensus       215 e~~~~~----~~i~~~~irpg~v~~~~~~~~~~----------~----------------------~~~~~~~~~~v~~~  258 (301)
                      |+....    .+..+..+|.++++|....+.+.          .                      ..+.....+.+++-
T Consensus       161 E~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~v~  240 (343)
T KOG1371|consen  161 EEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIHVL  240 (343)
T ss_pred             HHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccccCCCeeecceeeE
Confidence            998864    46888999999998832111110          0                      00112234578889


Q ss_pred             HHHHHHHHHhcCCC--CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          259 QVAEVAVEALLHPE--SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       259 Dva~~~~~~l~~~~--~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      |.|+.++.++....  ....+||++++   ...+..||+..+++
T Consensus       241 Dla~~h~~al~k~~~~~~~~i~Nlgtg---~g~~V~~lv~a~~k  281 (343)
T KOG1371|consen  241 DLADGHVAALGKLRGAAEFGVYNLGTG---KGSSVLELVTAFEK  281 (343)
T ss_pred             ehHHHHHHHhhccccchheeeEeecCC---CCccHHHHHHHHHH
Confidence            99999999997654  34458999886   88999999998875

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.95  E-value=2.2e-27  Score=230.95  Aligned_cols=229  Identities=22%  Similarity=0.269  Sum_probs=169.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHH--HCCCeEEEEEeCCchh--hhcccc-CCCCeEEEEccCCCCh-----HhHHHHhcCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLL--AKGFAVKAGVRDLDKA--KTTLSK-DNPSLQIVKADVTEGS-----AKLSEAIGDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~--~~G~~V~~~~r~~~~~--~~~~~~-~~~~~~~~~~Dl~~~~-----~~~~~~~~~~~  136 (301)
                      |+|||||||||||++++++|+  +.|++|++++|+....  ..+... ...+++++.+|++|+.     +.+.+. .+ +
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~-~   78 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-GD-I   78 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-cC-C
Confidence            589999999999999999999  5799999999965331  111111 1257899999999831     334444 67 9


Q ss_pred             CEEEEccCCCC-CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcch-hhcchhhHHHHHHHHH
Q 022216          137 EAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY-IFLNVFGLTLIAKLQA  214 (301)
Q Consensus       137 d~Vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~-~~~~~~~~y~~sK~~~  214 (301)
                      |+||||||... ..+....+++|+.|+.+++++|++.++++||++||..+||...+...++.. ....+.+.|+.+|..+
T Consensus        79 D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~~~~e~~~~~~~~~~~~Y~~sK~~~  158 (657)
T PRK07201         79 DHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEGVFREDDFDEGQGLPTPYHRTKFEA  158 (657)
T ss_pred             CEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccCccccccchhhcCCCCchHHHHHHH
Confidence            99999998643 223445678999999999999999988999999999999765432211111 1223346799999999


Q ss_pred             HHHHH-HcCCcEEEEecCcccCCCCCCcee-----------------------eccccccccCCCCHHHHHHHHHHHhcC
Q 022216          215 EQYIR-KSGINYTIIRPGGLRNEPPTGNII-----------------------METEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       215 e~~~~-~~~i~~~~irpg~v~~~~~~~~~~-----------------------~~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      |++++ ..+++++++||++++|+...+...                       ..........+++++|+++++..++..
T Consensus       159 E~~~~~~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~  238 (657)
T PRK07201        159 EKLVREECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHK  238 (657)
T ss_pred             HHHHHHcCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcC
Confidence            99887 478999999999999975432110                       000111123578999999999888876


Q ss_pred             CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          271 PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +...+++||++++   +.+++.|+++.+.+
T Consensus       239 ~~~~g~~~ni~~~---~~~s~~el~~~i~~  265 (657)
T PRK07201        239 DGRDGQTFHLTDP---KPQRVGDIYNAFAR  265 (657)
T ss_pred             cCCCCCEEEeCCC---CCCcHHHHHHHHHH
Confidence            6667889999985   89999999998865

>PLN02996 fatty acyl-CoA reductase

Probab=99.95  E-value=1.8e-27  Score=222.34  Aligned_cols=235  Identities=18%  Similarity=0.193  Sum_probs=169.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC---CeEEEEEeCCchh------h-hccc---------c--------CCCCeEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKA------K-TTLS---------K--------DNPSLQI  116 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G---~~V~~~~r~~~~~------~-~~~~---------~--------~~~~~~~  116 (301)
                      +++|+|||||||||||+++++.|++.+   .+|+++.|.....      . ++..         .        ...++++
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            468999999999999999999999865   3689999976421      1 1100         0        0157899


Q ss_pred             EEccCCCC------hHhHHHHhcCCCCEEEEccCCCC-CCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccccccc
Q 022216          117 VKADVTEG------SAKLSEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGA  188 (301)
Q Consensus       117 ~~~Dl~~~------~~~~~~~~~~~~d~Vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~  188 (301)
                      +.+|++++      .+.+.+++.+ +|+|||+|+... ..++...+++|+.|+.+++++|++. ++++||++||.++||.
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~~-vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~  167 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWKE-IDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGE  167 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHhC-CCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecC
Confidence            99999842      3446677788 999999998654 3345567899999999999999986 6789999999999986


Q ss_pred             cCCCCCCcchh--------------------------------------------------hcchhhHHHHHHHHHHHHH
Q 022216          189 AMGQILNPAYI--------------------------------------------------FLNVFGLTLIAKLQAEQYI  218 (301)
Q Consensus       189 ~~~~~~~~~~~--------------------------------------------------~~~~~~~y~~sK~~~e~~~  218 (301)
                      ..+...+..++                                                  .....+.|+.+|.++|+++
T Consensus       168 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv  247 (491)
T PLN02996        168 KSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLL  247 (491)
T ss_pred             CCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHHHH
Confidence            44210000000                                                  0112256999999999988


Q ss_pred             HH--cCCcEEEEecCcccCCCCCCce----------------------eeccccccccCCCCHHHHHHHHHHHhcCC--C
Q 022216          219 RK--SGINYTIIRPGGLRNEPPTGNI----------------------IMETEDTLYEGTISRDQVAEVAVEALLHP--E  272 (301)
Q Consensus       219 ~~--~~i~~~~irpg~v~~~~~~~~~----------------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~--~  272 (301)
                      ++  .+++++++||++++|+......                      ...+......+++++||++++++.++...  .
T Consensus       248 ~~~~~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~~  327 (491)
T PLN02996        248 GNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHAGG  327 (491)
T ss_pred             HHhcCCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHHhhcc
Confidence            75  4899999999999997543210                      01112233456899999999998888653  1


Q ss_pred             -CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          273 -SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       273 -~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                       ..+.+||++++. ..++++.|+++.+.+
T Consensus       328 ~~~~~vYNi~s~~-~~~~s~~ei~~~~~~  355 (491)
T PLN02996        328 QGSEIIYHVGSSL-KNPVKFSNLHDFAYR  355 (491)
T ss_pred             CCCCcEEEecCCC-CCcccHHHHHHHHHH
Confidence             246789999831 268999999998754

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.95  E-value=1e-26  Score=207.36  Aligned_cols=228  Identities=23%  Similarity=0.285  Sum_probs=169.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag  144 (301)
                      +||||||+|+||++++++|+++|++|+++.|...........  ...+++.+.+|+++ .+++.+++.. ++|+||||||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRD-RELLDRLFEEHKIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCC-HHHHHHHHHhCCCcEEEECcc
Confidence            589999999999999999999999999876543221111110  11257889999999 8888888863 4999999998


Q ss_pred             CCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH
Q 022216          145 FQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (301)
Q Consensus       145 ~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (301)
                      ....    .++...++.|+.++.++++++++.+++++|++||..+|+.....+..++. +..+...|+.+|..+|++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~-~~~~~~~y~~sK~~~e~~~~~  158 (328)
T TIGR01179        80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDS-PLGPINPYGRSKLMSERILRD  158 (328)
T ss_pred             ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccC-CCCCCCchHHHHHHHHHHHHH
Confidence            6422    24556788999999999999999888899999999999765443333332 334567899999999987753


Q ss_pred             -----cCCcEEEEecCcccCCCCCCce-------------------------eecc------ccccccCCCCHHHHHHHH
Q 022216          221 -----SGINYTIIRPGGLRNEPPTGNI-------------------------IMET------EDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       221 -----~~i~~~~irpg~v~~~~~~~~~-------------------------~~~~------~~~~~~~~v~~~Dva~~~  264 (301)
                           .+++++++||+.++|+...+.+                         ...+      .......+++++|+|+++
T Consensus       159 ~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~  238 (328)
T TIGR01179       159 LSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAH  238 (328)
T ss_pred             HHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHH
Confidence                 6899999999999997432100                         0000      111223589999999999


Q ss_pred             HHHhcCC--CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          265 VEALLHP--ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       265 ~~~l~~~--~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.++...  ...+++||+.++   +.++++|+++.+.+
T Consensus       239 ~~~~~~~~~~~~~~~~n~~~~---~~~s~~ei~~~~~~  273 (328)
T TIGR01179       239 LAALEYLLNGGESHVYNLGYG---QGFSVLEVIEAFKK  273 (328)
T ss_pred             HHHHhhhhcCCCcceEEcCCC---CcccHHHHHHHHHH
Confidence            8888642  235689999885   89999999999875

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=197.18  Aligned_cols=196  Identities=19%  Similarity=0.195  Sum_probs=150.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC-CCeEEEEccCCCChHhH-------HHHhcCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN-PSLQIVKADVTEGSAKL-------SEAIGDD  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~-------~~~~~~~  135 (301)
                      +++|+++||||++|||.+++++|+++|++|++..|+.++++++..+.. ..+..+..|++| .+++       .+.+++ 
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD-~~~~~~~i~~~~~~~g~-   81 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTD-RAAVEAAIEALPEEFGR-   81 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCC-HHHHHHHHHHHHHhhCc-
Confidence            357999999999999999999999999999999999999998876555 578999999999 6553       344455 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|++|||||....        ++|+.++++|+.|.++..++.    .+++.++||++||++..   .         ++..
T Consensus        82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~---~---------~y~~  149 (246)
T COG4221          82 IDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR---Y---------PYPG  149 (246)
T ss_pred             ccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc---c---------cCCC
Confidence            9999999997542        478899999999999998887    45566799999999621   1         1122


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec---cccc--cccCCCCHHHHHHHHHHHhcCC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME---TEDT--LYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~---~~~~--~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .+.|+.+|+...++..       ..+||++.|.||.+.+..........   ..+.  .....+.++|+|+++.+++..|
T Consensus       150 ~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P  229 (246)
T COG4221         150 GAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLFAATQP  229 (246)
T ss_pred             CccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhccCCCCCHHHHHHHHHHHHhCC
Confidence            4678899998876542       36899999999999665322221111   0111  1234789999999999999988


Q ss_pred             CC
Q 022216          272 ES  273 (301)
Q Consensus       272 ~~  273 (301)
                      ..
T Consensus       230 ~~  231 (246)
T COG4221         230 QH  231 (246)
T ss_pred             Cc
Confidence            74

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=7.7e-27  Score=198.74  Aligned_cols=208  Identities=22%  Similarity=0.272  Sum_probs=171.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+|||||++|.+|.++++.|. .+++|+.++|..                  .|++| .+.+.+.+.+ ++|+|||+|++
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~------------------~Ditd-~~~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEFEVIATDRAE------------------LDITD-PDAVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCceEEeccCcc------------------ccccC-hHHHHHHHHhhCCCEEEECccc
Confidence            359999999999999999998 678999987752                  89999 8999999987 69999999997


Q ss_pred             CC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       146 ~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ..    +.+++..|.+|..|+.+++++|++.|. ++|++||-+||.+..+.+..++.. ..|.+.||.||+++|+.+++.
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~-~~P~nvYG~sKl~GE~~v~~~  138 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDT-PNPLNVYGRSKLAGEEAVRAA  138 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCCC-CCChhhhhHHHHHHHHHHHHh
Confidence            65    235567789999999999999999995 999999999998777666655543 467899999999999999999


Q ss_pred             CCcEEEEecCcccCCCCCCce-----------eeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcC
Q 022216          222 GINYTIIRPGGLRNEPPTGNI-----------IMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~~-----------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s  290 (301)
                      +-+..+||.+++++....+.+           ........+..+++..|+|+++..++.... .+.+||+.+.   ...|
T Consensus       139 ~~~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~-~~~~yH~~~~---g~~S  214 (281)
T COG1091         139 GPRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEK-EGGVYHLVNS---GECS  214 (281)
T ss_pred             CCCEEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccc-cCcEEEEeCC---Cccc
Confidence            899999999999998653322           111123334568999999999988887765 3449999995   6689


Q ss_pred             HHHHHHHhhc
Q 022216          291 YEDLFGSIKQ  300 (301)
Q Consensus       291 ~~e~~~~i~~  300 (301)
                      |.|+++.|.+
T Consensus       215 wydfa~~I~~  224 (281)
T COG1091         215 WYEFAKAIFE  224 (281)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.95  E-value=3.1e-28  Score=213.21  Aligned_cols=210  Identities=21%  Similarity=0.288  Sum_probs=152.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+|||||++|+||+++.+.|.+.|++|+.+.|.                  ..|++| .+.+.+.+.. ++|+||||||.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------~~dl~d-~~~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------DLDLTD-PEAVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------CS-TTS-HHHHHHHHHHH--SEEEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------hcCCCC-HHHHHHHHHHhCCCeEecccee
Confidence            689999999999999999999999999988654                  589999 8888888876 69999999997


Q ss_pred             CCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       146 ~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ...    .+++..+++|+.++.+|+++|++.+. ++||+||..||++..+.+..++.. .+|.+.||.+|+++|+.+++.
T Consensus        62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d~-~~P~~~YG~~K~~~E~~v~~~  139 (286)
T PF04321_consen   62 TNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDDP-PNPLNVYGRSKLEGEQAVRAA  139 (286)
T ss_dssp             --HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS-----SSHHHHHHHHHHHHHHHH
T ss_pred             ecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCcccccccCCC-CCCCCHHHHHHHHHHHHHHHh
Confidence            642    35667889999999999999999985 999999999998776665555443 467899999999999999875


Q ss_pred             CCcEEEEecCcccCCCCCCce-----------eeccccccccCCCCHHHHHHHHHHHhcCCC---CCCcEEEeecCCCCC
Q 022216          222 GINYTIIRPGGLRNEPPTGNI-----------IMETEDTLYEGTISRDQVAEVAVEALLHPE---SSYKVVEIISRVDAP  287 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~~-----------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~v~~~~~~~  287 (301)
                      .-++.++|+++++|+...+.+           .+......+..+++++|+|+++..++++..   ..+++||+++.   +
T Consensus       140 ~~~~~IlR~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~---~  216 (286)
T PF04321_consen  140 CPNALILRTSWVYGPSGRNFLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGP---E  216 (286)
T ss_dssp             -SSEEEEEE-SEESSSSSSHHHHHHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---B---S
T ss_pred             cCCEEEEecceecccCCCchhhhHHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecC---c
Confidence            559999999999998433221           111122334467899999999999887654   24689999996   8


Q ss_pred             CcCHHHHHHHhhc
Q 022216          288 KRSYEDLFGSIKQ  300 (301)
Q Consensus       288 ~~s~~e~~~~i~~  300 (301)
                      .+|+.|+++.+.+
T Consensus       217 ~~S~~e~~~~i~~  229 (286)
T PF04321_consen  217 RVSRYEFAEAIAK  229 (286)
T ss_dssp             -EEHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHH
Confidence            9999999998865

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.95  E-value=6.8e-27  Score=207.65  Aligned_cols=219  Identities=16%  Similarity=0.145  Sum_probs=161.5

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc----CCCCEEEEcc
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG----DDSEAVVCAT  143 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~~d~Vi~~A  143 (301)
                      ||||||+|+||+++++.|+++|+ +|+++.|..... .+..   .....+..|+++ .+.+.....    + +|+|||||
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~---~~~~~~~~d~~~-~~~~~~~~~~~~~~-~D~vvh~A   74 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KFLN---LADLVIADYIDK-EDFLDRLEKGAFGK-IEAIFHQG   74 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hhhh---hhheeeeccCcc-hhHHHHHHhhccCC-CCEEEECc
Confidence            69999999999999999999997 788877654321 1110   112356678887 566655543    5 99999999


Q ss_pred             CCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH-
Q 022216          144 GFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-  220 (301)
Q Consensus       144 g~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-  220 (301)
                      +...  ..++...+++|+.++.+++++|++.++ +||++||..+|+.... +..++..+..+.+.|+.+|..+|+++++ 
T Consensus        75 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~-~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~  152 (314)
T TIGR02197        75 ACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEA-GFREGRELERPLNVYGYSKFLFDQYVRRR  152 (314)
T ss_pred             cccCccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCC-CcccccCcCCCCCHHHHHHHHHHHHHHHH
Confidence            8643  235556778999999999999998886 8999999999986533 2233333334677899999999988753 


Q ss_pred             -----cCCcEEEEecCcccCCCCCC--c-----------------eeec------cccccccCCCCHHHHHHHHHHHhcC
Q 022216          221 -----SGINYTIIRPGGLRNEPPTG--N-----------------IIME------TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       221 -----~~i~~~~irpg~v~~~~~~~--~-----------------~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                           .+++++++||+.++|+....  .                 +.+.      +......+++|++|++++++.++..
T Consensus       153 ~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~  232 (314)
T TIGR02197       153 VLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN  232 (314)
T ss_pred             hHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc
Confidence                 35789999999999986421  0                 0010      0112224689999999999988877


Q ss_pred             CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          271 PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                       . .+++||++++   ++++++|+++.|.+
T Consensus       233 -~-~~~~yni~~~---~~~s~~e~~~~i~~  257 (314)
T TIGR02197       233 -G-VSGIFNLGTG---RARSFNDLADAVFK  257 (314)
T ss_pred             -c-cCceEEcCCC---CCccHHHHHHHHHH
Confidence             2 4669999996   89999999999875

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.95  E-value=1.8e-26  Score=208.83  Aligned_cols=229  Identities=20%  Similarity=0.248  Sum_probs=167.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchh------hhcccc-------CC-CCeEEEEccCCCC-----hH
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKA------KTTLSK-------DN-PSLQIVKADVTEG-----SA  126 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~------~~~~~~-------~~-~~~~~~~~Dl~~~-----~~  126 (301)
                      +|||||||||||++++++|+++|  ++|+++.|+.+..      .+....       .. .++.++.+|++++     .+
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58999999999999999999999  6899999987632      111100       01 5799999999863     24


Q ss_pred             hHHHHhcCCCCEEEEccCCCCC-CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcch----hhc
Q 022216          127 KLSEAIGDDSEAVVCATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFL  201 (301)
Q Consensus       127 ~~~~~~~~~~d~Vi~~Ag~~~~-~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~----~~~  201 (301)
                      .+.+...+ +|+|||||+.... ..+...+++|+.++.++++++.+.+.++||++||.++|+.....+..+..    ...
T Consensus        81 ~~~~~~~~-~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~~~  159 (367)
T TIGR01746        81 EWERLAEN-VDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTPPP  159 (367)
T ss_pred             HHHHHHhh-CCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccccccc
Confidence            56666677 9999999986442 23345567999999999999999888889999999998764322111111    111


Q ss_pred             chhhHHHHHHHHHHHHHHH---cCCcEEEEecCcccCCCCCCce-----------------eeccccccccCCCCHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTGNI-----------------IMETEDTLYEGTISRDQVA  261 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~---~~i~~~~irpg~v~~~~~~~~~-----------------~~~~~~~~~~~~v~~~Dva  261 (301)
                      .+.+.|+.+|+.+|++++.   .|++++++|||.++|+...+..                 ..+........+++++|+|
T Consensus       160 ~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~vddva  239 (367)
T TIGR01746       160 GLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPDSPELTEDLTPVDYVA  239 (367)
T ss_pred             ccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCCCCccccCcccHHHHH
Confidence            2345799999999988754   4999999999999997433211                 0111111234589999999


Q ss_pred             HHHHHHhcCCCC--CCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          262 EVAVEALLHPES--SYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       262 ~~~~~~l~~~~~--~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++++.++..+..  .+++||+.++   +.++++|+++.+.+
T Consensus       240 ~ai~~~~~~~~~~~~~~~~~v~~~---~~~s~~e~~~~i~~  277 (367)
T TIGR01746       240 RAIVALSSQPAASAGGPVFHVVNP---EPVSLDEFLEWLER  277 (367)
T ss_pred             HHHHHHHhCCCcccCCceEEecCC---CCCCHHHHHHHHHH
Confidence            999888876653  2789999985   89999999998864

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=3e-26  Score=190.66  Aligned_cols=225  Identities=18%  Similarity=0.222  Sum_probs=178.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ...+++|+||||.||||+|+|++|..+|++|++++.--.+......  ....+++.+.-|+..+      .+.+ +|.|+
T Consensus        24 p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~p------l~~e-vD~Iy   96 (350)
T KOG1429|consen   24 PSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEP------LLKE-VDQIY   96 (350)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechhH------HHHH-hhhhh
Confidence            4467999999999999999999999999999998765444332221  1456788888887762      6677 99999


Q ss_pred             EccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh----hcchhhHHHHHHH
Q 022216          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI----FLNVFGLTLIAKL  212 (301)
Q Consensus       141 ~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~----~~~~~~~y~~sK~  212 (301)
                      |.|+...+    ..+..++.+|..++.+.+-.|++.+ +||++.||..|||+....|..+.|+    +..+...|...|.
T Consensus        97 hLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr  175 (350)
T KOG1429|consen   97 HLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKR  175 (350)
T ss_pred             hhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHH
Confidence            99986554    3567889999999999999999988 7999999999999977666555554    3456788999999


Q ss_pred             HHHHHH----HHcCCcEEEEecCcccCCCC---CCc--------------eeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          213 QAEQYI----RKSGINYTIIRPGGLRNEPP---TGN--------------IIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       213 ~~e~~~----~~~~i~~~~irpg~v~~~~~---~~~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .+|.+.    ++.|+.+.|.|+.+.|||..   .++              +.+.+.......|++++|+.+.++.+++++
T Consensus       176 ~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~  255 (350)
T KOG1429|consen  176 VAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESD  255 (350)
T ss_pred             HHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCC
Confidence            999876    45799999999999999942   222              223333334457999999999999999988


Q ss_pred             CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          272 ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ....  +|++++   +.+|+.|+++.+.+
T Consensus       256 ~~~p--vNiGnp---~e~Tm~elAemv~~  279 (350)
T KOG1429|consen  256 YRGP--VNIGNP---GEFTMLELAEMVKE  279 (350)
T ss_pred             CcCC--cccCCc---cceeHHHHHHHHHH
Confidence            6544  999996   89999999998864

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.95  E-value=6.8e-26  Score=185.79  Aligned_cols=183  Identities=33%  Similarity=0.467  Sum_probs=151.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCCCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG  148 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~  148 (301)
                      |+|+||||++|+.++++|+++|++|+++.|++++.++     ..+++++.+|+.| .+.+.+++++ +|+||+++|....
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~~d-~~~~~~al~~-~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDLFD-PDSVKAALKG-ADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCTTC-HHHHHHHHTT-SSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeeehh-hhhhhhhhhh-cchhhhhhhhhcc
Confidence            7999999999999999999999999999999988775     4899999999999 8999999999 9999999975433


Q ss_pred             CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEEEE
Q 022216          149 WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTII  228 (301)
Q Consensus       149 ~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~~i  228 (301)
                               +...+.++++++++.+++++|++|+..+|.......   .......+..|...|..+|+++++.+++|+++
T Consensus        74 ---------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~iv  141 (183)
T PF13460_consen   74 ---------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLF---SDEDKPIFPEYARDKREAEEALRESGLNWTIV  141 (183)
T ss_dssp             ---------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEE---EGGTCGGGHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred             ---------cccccccccccccccccccceeeeccccCCCCCccc---ccccccchhhhHHHHHHHHHHHHhcCCCEEEE
Confidence                     278889999999999999999999999887544321   11112223677889999999999999999999


Q ss_pred             ecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcC
Q 022216          229 RPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       229 rpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ||++++++.................+++++|+|++++.+|++
T Consensus       142 rp~~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~  183 (183)
T PF13460_consen  142 RPGWIYGNPSRSYRLIKEGGPQGVNFISREDVAKAIVEALEN  183 (183)
T ss_dssp             EESEEEBTTSSSEEEESSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred             ECcEeEeCCCcceeEEeccCCCCcCcCCHHHHHHHHHHHhCC
Confidence            999999987554433333333344789999999999988753

...

>PRK05865 hypothetical protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=218.60  Aligned_cols=192  Identities=18%  Similarity=0.263  Sum_probs=157.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+|+||||+|+||++++++|+++|++|++++|+....      ...++.++.+|++| .+.+.+++++ +|+|||||+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~~~~v~~v~gDL~D-~~~l~~al~~-vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------WPSSADFIAADIRD-ATAVESAMTG-ADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------cccCceEEEeeCCC-HHHHHHHHhC-CCEEEECCCcc
Confidence            5799999999999999999999999999999875321      12368899999999 8899999998 99999999854


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEE
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~  226 (301)
                      ..     .+++|+.++.++++++++.++++||++||..                          |.++|+++++++++++
T Consensus        73 ~~-----~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~--------------------------K~aaE~ll~~~gl~~v  121 (854)
T PRK05865         73 GR-----NDHINIDGTANVLKAMAETGTGRIVFTSSGH--------------------------QPRVEQMLADCGLEWV  121 (854)
T ss_pred             cc-----hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH--------------------------HHHHHHHHHHcCCCEE
Confidence            32     4689999999999999999999999999952                          7888998888999999


Q ss_pred             EEecCcccCCCCCCce-------eec-cccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHh
Q 022216          227 IIRPGGLRNEPPTGNI-------IME-TEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       227 ~irpg~v~~~~~~~~~-------~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i  298 (301)
                      ++||+++||+.....+       ... +......+++|++|+|++++.++..+...+++||++++   +.++++|+++.+
T Consensus       122 ILRp~~VYGP~~~~~i~~ll~~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~ggvyNIgsg---~~~Si~EIae~l  198 (854)
T PRK05865        122 AVRCALIFGRNVDNWVQRLFALPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDSGPVNLAAP---GELTFRRIAAAL  198 (854)
T ss_pred             EEEeceEeCCChHHHHHHHhcCceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCCCeEEEECC---CcccHHHHHHHH
Confidence            9999999998532211       111 11222236899999999998888665445679999996   889999999988


Q ss_pred             hc
Q 022216          299 KQ  300 (301)
Q Consensus       299 ~~  300 (301)
                      ++
T Consensus       199 ~~  200 (854)
T PRK05865        199 GR  200 (854)
T ss_pred             hh
Confidence            64

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.94  E-value=7.7e-26  Score=197.40  Aligned_cols=220  Identities=20%  Similarity=0.181  Sum_probs=160.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+.+++........+.++++|++| .+++.+.+.+      ++|+
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d~   80 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTD-RAAVFAAVETAVEHFGRLDI   80 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999999999999998877655443334568889999999 6666554432      3899


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||||||....        +++...+++|+.++.++++++    ++.+.+++|++||...+...            .....
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------~~~~~  148 (275)
T PRK08263         81 VVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAF------------PMSGI  148 (275)
T ss_pred             EEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCC------------CCccH
Confidence            9999997542        245567899999998888886    45567899999998755322            12356


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec----cc---------cccccCC-CCHHHHHHHHH
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME----TE---------DTLYEGT-ISRDQVAEVAV  265 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~----~~---------~~~~~~~-v~~~Dva~~~~  265 (301)
                      |+.+|.+.+.+.+       .+|+++++++||.+.+++........    ..         ......+ .+++|+|++++
T Consensus       149 Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~  228 (275)
T PRK08263        149 YHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQWSERSVDGDPEAAAEALL  228 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            8899998876542       36899999999999987653211000    00         0011235 78999999999


Q ss_pred             HHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          266 EALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       266 ~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .++..+......++...   +..+++.++.+.+.+
T Consensus       229 ~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  260 (275)
T PRK08263        229 KLVDAENPPLRLFLGSG---VLDLAKADYERRLAT  260 (275)
T ss_pred             HHHcCCCCCeEEEeCch---HHHHHHHHHHHHHHH
Confidence            99887765444333333   578889998887754

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.94  E-value=4.5e-25  Score=194.24  Aligned_cols=223  Identities=19%  Similarity=0.228  Sum_probs=166.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhh--hc-cccCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAK--TT-LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~--~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      ++.+++||||+||+|++++++|++++  .+|++++..+....  .. .......+..+.+|+.| ...+..++.+ + .|
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~-~~~i~~a~~~-~-~V   79 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLD-ANSISNAFQG-A-VV   79 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhh-hhhhhhhccC-c-eE
Confidence            46799999999999999999999998  79999887764211  11 11135789999999999 8999999999 8 77


Q ss_pred             EEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCC---cchhhcchhhHHHHHHH
Q 022216          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILN---PAYIFLNVFGLTLIAKL  212 (301)
Q Consensus       140 i~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~---~~~~~~~~~~~y~~sK~  212 (301)
                      +|||+...+    .+.+..+++|+.||.+++++|++.+++++||+||..|..........   ..++ .+....|+.||.
T Consensus        80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p-~~~~d~Y~~sKa  158 (361)
T KOG1430|consen   80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYP-LKHIDPYGESKA  158 (361)
T ss_pred             EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCc-cccccccchHHH
Confidence            777764332    35778899999999999999999999999999999987544432211   2222 444578999999


Q ss_pred             HHHHHHHHc----CCcEEEEecCcccCCCCCCce-------------eeccccccccCCCCHHHHHHHHHHHh-----cC
Q 022216          213 QAEQYIRKS----GINYTIIRPGGLRNEPPTGNI-------------IMETEDTLYEGTISRDQVAEVAVEAL-----LH  270 (301)
Q Consensus       213 ~~e~~~~~~----~i~~~~irpg~v~~~~~~~~~-------------~~~~~~~~~~~~v~~~Dva~~~~~~l-----~~  270 (301)
                      .+|+++.+.    ++..+++||..||||......             ........+.++++.+.+|.+++.+.     ..
T Consensus       159 ~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~~~  238 (361)
T KOG1430|consen  159 LAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLDKS  238 (361)
T ss_pred             HHHHHHHHhcCCCCeeEEEEccccccCCCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHhcC
Confidence            999988653    378999999999999654321             11122245556888888888776543     34


Q ss_pred             CCCCCcEEEeecCCCCCCcCHHHH
Q 022216          271 PESSYKVVEIISRVDAPKRSYEDL  294 (301)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~s~~e~  294 (301)
                      +...|+.|.|.++   +++..-+.
T Consensus       239 ~~~~Gq~yfI~d~---~p~~~~~~  259 (361)
T KOG1430|consen  239 PSVNGQFYFITDD---TPVRFFDF  259 (361)
T ss_pred             CccCceEEEEeCC---CcchhhHH
Confidence            5678999999997   55444443

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.7e-25  Score=186.23  Aligned_cols=230  Identities=17%  Similarity=0.164  Sum_probs=180.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCC--chhhhccc-cCCCCeEEEEccCCCChHhHHHHhcC-CCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDL--DKAKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~--~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~V  139 (301)
                      .+.++||||.||||++.+..++..-  ++.+.++.-.  +.+..+.. ...++..++++|+.+ +..+...+.. ++|.|
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~-~~~~~~~~~~~~id~v   84 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIAD-ADLVLYLFETEEIDTV   84 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccc-hHHHHhhhccCchhhh
Confidence            4899999999999999999999873  4555543221  11222111 156899999999999 7777777765 79999


Q ss_pred             EEccCCCC----CCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHH
Q 022216          140 VCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       140 i~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      +|.|+...    ..+.......|+.++..|+++++.. ++++||++||..|||+..+.....+....+|.+.|+++|+++
T Consensus        85 ihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKaAa  164 (331)
T KOG0747|consen   85 IHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKAAA  164 (331)
T ss_pred             hhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHHHH
Confidence            99998543    2355567789999999999999988 579999999999999998776554555667889999999999


Q ss_pred             HHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          215 EQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       215 e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      |.+++    ++|++++++|-++||||.....               ..+.+.......|++++|+++++..++.. ...+
T Consensus       165 E~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~K-g~~g  243 (331)
T KOG0747|consen  165 EMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK-GELG  243 (331)
T ss_pred             HHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhc-CCcc
Confidence            98775    5799999999999999965432               22333444556799999999999777777 4579


Q ss_pred             cEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          276 KVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       276 ~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++|||+..   ..++..|+++.|.+
T Consensus       244 eIYNIgtd---~e~~~~~l~k~i~e  265 (331)
T KOG0747|consen  244 EIYNIGTD---DEMRVIDLAKDICE  265 (331)
T ss_pred             ceeeccCc---chhhHHHHHHHHHH
Confidence            99999997   88999999887764

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.7e-25  Score=195.22  Aligned_cols=217  Identities=21%  Similarity=0.271  Sum_probs=157.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~V  139 (301)
                      .|++|||||+|+||++++++|+++|++|+++.|+++..+.+......++.++.+|++| .+++.+.+.+      ++|+|
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v   80 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTD-SAAVRAVVDRAFAALGRIDVV   80 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            3789999999999999999999999999999998876665543334578999999999 7666655431      38999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |||||....        ++++..+++|+.++.++++++    ++.+.++||++||.....   +         ....+.|
T Consensus        81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---~---------~~~~~~Y  148 (276)
T PRK06482         81 VSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI---A---------YPGFSLY  148 (276)
T ss_pred             EECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc---C---------CCCCchh
Confidence            999996532        123456789999999999997    555678999999975321   1         1124679


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----eeccc-----------cccccCCCCHHHHHHHH
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----IMETE-----------DTLYEGTISRDQVAEVA  264 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~~~~~-----------~~~~~~~v~~~Dva~~~  264 (301)
                      +.+|.+.|.+++       .+|++++++|||.+.++...+..     .....           ...+.-+.+++|+++++
T Consensus       149 ~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~  228 (276)
T PRK06482        149 HATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAIPGDPQKMVQAM  228 (276)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCCCCCHHHHHHHH
Confidence            999999986653       25999999999998665432210     00000           00011236899999999


Q ss_pred             HHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhh
Q 022216          265 VEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIK  299 (301)
Q Consensus       265 ~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~  299 (301)
                      +.++..+. .+..|+++++   +..++.|+++.+.
T Consensus       229 ~~~~~~~~-~~~~~~~g~~---~~~~~~~~~~~~~  259 (276)
T PRK06482        229 IASADQTP-APRRLTLGSD---AYASIRAALSERL  259 (276)
T ss_pred             HHHHcCCC-CCeEEecChH---HHHHHHHHHHHHH
Confidence            99887654 3556888886   7778887776654

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.93  E-value=4.8e-25  Score=200.29  Aligned_cols=217  Identities=19%  Similarity=0.233  Sum_probs=175.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC-C
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD-D  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~-~  135 (301)
                      .+++|+||||||+|-||+++++++++.+. ++++++|++.+......+     ....+.++.+|+.| .+.+..++.+ +
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD-~~~~~~~~~~~k  325 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRD-RDRVERAMEGHK  325 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEeccccc-HHHHHHHHhcCC
Confidence            46899999999999999999999999974 788888887665432211     24688899999999 8999999998 8


Q ss_pred             CCEEEEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHH
Q 022216          136 SEAVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       136 ~d~Vi~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (301)
                      +|+|||+|+..+    +.++.+.+++|+.||.|+++||.+++++++|++||--+               .+|.+.||.+|
T Consensus       326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKA---------------V~PtNvmGaTK  390 (588)
T COG1086         326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA---------------VNPTNVMGATK  390 (588)
T ss_pred             CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcc---------------cCCchHhhHHH
Confidence            999999999765    46788899999999999999999999999999999531               24568899999


Q ss_pred             HHHHHHHHHc-------CCcEEEEecCcccCCCCC-----------CceeeccccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          212 LQAEQYIRKS-------GINYTIIRPGGLRNEPPT-----------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       212 ~~~e~~~~~~-------~i~~~~irpg~v~~~~~~-----------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      ..+|+++...       +-+++++|.|+|.|..++           +....-....+..-|++..|.++.++++.+... 
T Consensus       391 r~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGSViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~~~-  469 (588)
T COG1086         391 RLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGSVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAGAIAK-  469 (588)
T ss_pred             HHHHHHHHHHhhccCCCCcEEEEEEecceecCCCCCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHHhhcC-
Confidence            9999887532       367899999999986432           222222223333457899999999999888654 


Q ss_pred             CCcEEEeecCCCCCCcCHHHHHHHhh
Q 022216          274 SYKVVEIISRVDAPKRSYEDLFGSIK  299 (301)
Q Consensus       274 ~~~~~~v~~~~~~~~~s~~e~~~~i~  299 (301)
                      +|.+|-+--|   +++.+.|+++.|.
T Consensus       470 gGeifvldMG---epvkI~dLAk~mi  492 (588)
T COG1086         470 GGEIFVLDMG---EPVKIIDLAKAMI  492 (588)
T ss_pred             CCcEEEEcCC---CCeEHHHHHHHHH
Confidence            6778877774   9999999999884

>PLN02778 3,5-epimerase/4-reductase

Probab=99.93  E-value=3.9e-25  Score=194.92  Aligned_cols=206  Identities=15%  Similarity=0.138  Sum_probs=147.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag  144 (301)
                      .|+||||||+||||+++++.|+++|++|+...                     .|+.| .+.+...+.+ ++|+|||+||
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------~~~~~-~~~v~~~l~~~~~D~ViH~Aa   66 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------GRLEN-RASLEADIDAVKPTHVFNAAG   66 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------CccCC-HHHHHHHHHhcCCCEEEECCc
Confidence            57899999999999999999999999987421                     34455 4556555553 4999999999


Q ss_pred             CCCC-------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCC------CCCCcchhhcchhhHHHHHH
Q 022216          145 FQPG-------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG------QILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       145 ~~~~-------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~------~~~~~~~~~~~~~~~y~~sK  211 (301)
                      ....       .++..++++|+.|+.+++++|++.+++ ++++||.++|+....      .+..+++.+..+.+.|+.+|
T Consensus        67 ~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~Yg~sK  145 (298)
T PLN02778         67 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSFYSKTK  145 (298)
T ss_pred             ccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCchHHHH
Confidence            6532       234557889999999999999999885 566677778764321      12334444444457899999


Q ss_pred             HHHHHHHHHcCCcEEEEecCcccCCCCCC--cee---ecccc--ccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 022216          212 LQAEQYIRKSGINYTIIRPGGLRNEPPTG--NII---METED--TLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRV  284 (301)
Q Consensus       212 ~~~e~~~~~~~i~~~~irpg~v~~~~~~~--~~~---~~~~~--~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~  284 (301)
                      .++|++++.+. +..++|++..+++....  .+.   .....  ....++++++|++++++.++..+.  .++||++++ 
T Consensus       146 ~~~E~~~~~y~-~~~~lr~~~~~~~~~~~~~~fi~~~~~~~~~~~~~~s~~yv~D~v~al~~~l~~~~--~g~yNigs~-  221 (298)
T PLN02778        146 AMVEELLKNYE-NVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL--TGIYNFTNP-  221 (298)
T ss_pred             HHHHHHHHHhh-ccEEeeecccCCcccccHHHHHHHHHcCCCeeEcCCCCEEHHHHHHHHHHHHhCCC--CCeEEeCCC-
Confidence            99999887654 56778887766543111  110   01111  111358899999999988886543  359999885 


Q ss_pred             CCCCcCHHHHHHHhhc
Q 022216          285 DAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       285 ~~~~~s~~e~~~~i~~  300 (301)
                        +.+|+.|+++.+++
T Consensus       222 --~~iS~~el~~~i~~  235 (298)
T PLN02778        222 --GVVSHNEILEMYRD  235 (298)
T ss_pred             --CcccHHHHHHHHHH
Confidence              89999999998865

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.93  E-value=1.8e-24  Score=190.06  Aligned_cols=217  Identities=15%  Similarity=0.078  Sum_probs=152.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCCCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPG  148 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~  148 (301)
                      ||||||+|+||+++++.|+++|++|++++|++.+......   ..    ..|+..  ..+.+.+.+ +|+|||+||....
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~~----~~~~~~--~~~~~~~~~-~D~Vvh~a~~~~~   70 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW---EG----YKPWAP--LAESEALEG-ADAVINLAGEPIA   70 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc---ee----eecccc--cchhhhcCC-CCEEEECCCCCcc
Confidence            6899999999999999999999999999998776432211   11    112222  345567778 9999999986432


Q ss_pred             -CCC-----CCceeeehHHHHHHHHHHHHcCCC--EEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH--
Q 022216          149 -WDL-----FAPWKVDNFGTVNLVEACRKRGVN--RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI--  218 (301)
Q Consensus       149 -~~~-----~~~~~~N~~g~~~l~~a~~~~~~~--~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~--  218 (301)
                       .++     ..++++|+.++.++++++++.+++  ++|+.|+..+|+.....+..++.++ .+...|...+...|+.+  
T Consensus        71 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~-~~~~~~~~~~~~~e~~~~~  149 (292)
T TIGR01777        71 DKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSP-AGDDFLAELCRDWEEAAQA  149 (292)
T ss_pred             cccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCC-CCCChHHHHHHHHHHHhhh
Confidence             222     346789999999999999998863  5666777778886544444443311 22233444555555443  


Q ss_pred             -HHcCCcEEEEecCcccCCCCCC--c----ee-----eccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCC
Q 022216          219 -RKSGINYTIIRPGGLRNEPPTG--N----II-----METEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDA  286 (301)
Q Consensus       219 -~~~~i~~~~irpg~v~~~~~~~--~----~~-----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~  286 (301)
                       ++.+++++++||+.++|+....  .    ..     ..+....+.++++++|+|+++..++..+.. .++||+.++   
T Consensus       150 ~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~-~g~~~~~~~---  225 (292)
T TIGR01777       150 AEDLGTRVVLLRTGIVLGPKGGALAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFALENASI-SGPVNATAP---  225 (292)
T ss_pred             chhcCCceEEEeeeeEECCCcchhHHHHHHHhcCcccccCCCCcccccEeHHHHHHHHHHHhcCccc-CCceEecCC---
Confidence             3468999999999999985310  0    00     011223345789999999999999887653 468999985   


Q ss_pred             CCcCHHHHHHHhhc
Q 022216          287 PKRSYEDLFGSIKQ  300 (301)
Q Consensus       287 ~~~s~~e~~~~i~~  300 (301)
                      +.+++.|+++.|++
T Consensus       226 ~~~s~~di~~~i~~  239 (292)
T TIGR01777       226 EPVRNKEFAKALAR  239 (292)
T ss_pred             CccCHHHHHHHHHH
Confidence            89999999999875

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.93  E-value=8.1e-26  Score=193.60  Aligned_cols=212  Identities=21%  Similarity=0.280  Sum_probs=150.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccC-----CCCeE----EEEccCCCChHhHHHHhcC-CCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKD-----NPSLQ----IVKADVTEGSAKLSEAIGD-DSE  137 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~-----~~~~~----~~~~Dl~~~~~~~~~~~~~-~~d  137 (301)
                      ||||||+|.||++++++|++.+ .++++++|++.++..+..+.     ..++.    .+.+|++| .+.+..++.. ++|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd-~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRD-KERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCH-HHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccC-HHHHHHHHhhcCCC
Confidence            7999999999999999999998 57999999987765433221     23343    45899999 8999999994 599


Q ss_pred             EEEEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHH
Q 022216          138 AVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (301)
Q Consensus       138 ~Vi~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (301)
                      +|||+|+..+    +..+.+.+++|+.||.|++++|.+++++++|++||--+               .+|.+.||+||..
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKA---------------v~PtnvmGatKrl  144 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKA---------------VNPTNVMGATKRL  144 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGC---------------SS--SHHHHHHHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccc---------------CCCCcHHHHHHHH
Confidence            9999999876    46778889999999999999999999999999999632               2356889999999


Q ss_pred             HHHHHHHc-------CCcEEEEecCcccCCCCC-----------CceeeccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          214 AEQYIRKS-------GINYTIIRPGGLRNEPPT-----------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       214 ~e~~~~~~-------~i~~~~irpg~v~~~~~~-----------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      +|+++...       +.++.++|.|+|.+-.++           +..+.-......+-|+++++.++.++.++.... ++
T Consensus       145 aE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlTvT~p~mtRffmti~EAv~Lvl~a~~~~~-~g  223 (293)
T PF02719_consen  145 AEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEAVQLVLQAAALAK-GG  223 (293)
T ss_dssp             HHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEEECETT-EEEEE-HHHHHHHHHHHHHH---TT
T ss_pred             HHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHHHHHHHHHHcCCcceeCCCCcEEEEecHHHHHHHHHHHHhhCC-CC
Confidence            99988642       468899999999985322           222222223333457899999999998887654 57


Q ss_pred             cEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          276 KVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       276 ~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++|-.--+   +++.+.|+++.+.+
T Consensus       224 eifvl~mg---~~v~I~dlA~~~i~  245 (293)
T PF02719_consen  224 EIFVLDMG---EPVKILDLAEAMIE  245 (293)
T ss_dssp             EEEEE------TCEECCCHHHHHHH
T ss_pred             cEEEecCC---CCcCHHHHHHHHHh
Confidence            77777774   89999999988753

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.93  E-value=5.5e-24  Score=182.77  Aligned_cols=212  Identities=15%  Similarity=0.136  Sum_probs=152.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++|++|||||+||||++++++|+++|++|+++.|+... .+.+   +.....++.++.+|++| .+++.+.+..     
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD-EESVAALMDTAREEF   82 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhC
Confidence            467999999999999999999999999999999987542 2221   11123567899999999 7666655531     


Q ss_pred             -CCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          135 -DSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                       ++|+||||||...  ..++...+++|+.++.++++++.+.  ..++||++||........    .+.   ...+..|+.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~~---~~~~~~Y~~  155 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VKT---MPEYEPVAR  155 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----ccC---CccccHHHH
Confidence             3999999998543  2346678899999999999999764  235899999964321110    011   112567999


Q ss_pred             HHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCcee--ecc----ccccccCCCCHHHHHHHHHHHhcCCCCCCc
Q 022216          210 AKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNII--MET----EDTLYEGTISRDQVAEVAVEALLHPESSYK  276 (301)
Q Consensus       210 sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~--~~~----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~  276 (301)
                      +|.++|.+++.       .++++++|+||.+.++.......  ...    .......+++++|+|++++.++.++...++
T Consensus       156 sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~g~  235 (248)
T PRK07806        156 SKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIEARREAAGKLYTVSEFAAEVARAVTAPVPSGH  235 (248)
T ss_pred             HHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHHHHHhhhcccCCHHHHHHHHHHHhhccccCcc
Confidence            99999987643       68999999999888764322110  000    001113578999999999988887767889


Q ss_pred             EEEeecC
Q 022216          277 VVEIISR  283 (301)
Q Consensus       277 ~~~v~~~  283 (301)
                      ++++.++
T Consensus       236 ~~~i~~~  242 (248)
T PRK07806        236 IEYVGGA  242 (248)
T ss_pred             EEEecCc
Confidence            9999885

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.93  E-value=7.5e-25  Score=185.58  Aligned_cols=195  Identities=20%  Similarity=0.238  Sum_probs=146.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhc---C--
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG---D--  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~---~--  134 (301)
                      +.+++++|||||+|||.++|++|+++|++|+++.|+.++++++..+    .+..++++.+|+++ .+++.+...   +  
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~-~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSD-PEALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC-hhHHHHHHHHHHhcC
Confidence            3578999999999999999999999999999999999988876543    34567899999999 655555443   1  


Q ss_pred             -CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       .+|++|||||+....        +...++++|+.++..|.++.    .+.+.++||+++|.+.|-.            .
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p------------~  150 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIP------------T  150 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCC------------C
Confidence             499999999975432        23467899999988877776    5566789999999974421            1


Q ss_pred             chhhHHHHHHHHHHHH-------HHHcCCcEEEEecCcccCCCCCC-ceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          202 NVFGLTLIAKLQAEQY-------IRKSGINYTIIRPGGLRNEPPTG-NIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~-------~~~~~i~~~~irpg~v~~~~~~~-~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ...+.|+.||...-.+       ++..|++|+.+.||.+.++.... ....... .....+++++|+|+..+..+...+
T Consensus       151 p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~~~~~~~~-~~~~~~~~~~~va~~~~~~l~~~k  228 (265)
T COG0300         151 PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGSDVYLL-SPGELVLSPEDVAEAALKALEKGK  228 (265)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccccccccccc-cchhhccCHHHHHHHHHHHHhcCC
Confidence            2246677777766432       34579999999999999987641 1111111 111237899999999999998754

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.8e-24  Score=188.71  Aligned_cols=221  Identities=20%  Similarity=0.222  Sum_probs=159.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---C--CCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D--NPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ++++|++|||||+|+||+++++.|+++|++|+++.|+.++.+.....   .  ..++.++.+|++| .+++.+.+..   
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~   82 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD-EDQVARAVDAATA   82 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC-HHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999987654433211   1  2468899999999 6666665542   


Q ss_pred             ---CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcch
Q 022216          135 ---DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         ++|+||||||....         +++..++++|+.++.++++++.+    .+.++||++||...+...         
T Consensus        83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------  153 (276)
T PRK05875         83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH---------  153 (276)
T ss_pred             HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC---------
Confidence               39999999985321         13456788999999999887743    344699999998754221         


Q ss_pred             hhcchhhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~  265 (301)
                         .+.+.|+.+|.+.|.+++.       .++++++|+||.+.+++........      ........+.+++|+|++++
T Consensus       154 ---~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  230 (276)
T PRK05875        154 ---RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTPLPRVGEVEDVANLAM  230 (276)
T ss_pred             ---CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCCCCCCcCHHHHHHHHH
Confidence               1246789999999987652       4799999999999887643221100      01111234568999999998


Q ss_pred             HHhcCCCC--CCcEEEeecCCCCCCc----CHHHHHHHhh
Q 022216          266 EALLHPES--SYKVVEIISRVDAPKR----SYEDLFGSIK  299 (301)
Q Consensus       266 ~~l~~~~~--~~~~~~v~~~~~~~~~----s~~e~~~~i~  299 (301)
                      .++..+..  .++++++.++   ..+    +..|+++.+.
T Consensus       231 ~l~~~~~~~~~g~~~~~~~g---~~~~~~~~~~~~~~~~~  267 (276)
T PRK05875        231 FLLSDAASWITGQVINVDGG---HMLRRGPDFSSMLEPVF  267 (276)
T ss_pred             HHcCchhcCcCCCEEEECCC---eeccCCccHHHHHHHHh
Confidence            87765542  3788888875   444    8888887664

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.92  E-value=5.4e-25  Score=190.87  Aligned_cols=205  Identities=17%  Similarity=0.183  Sum_probs=142.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.+++++....    .+.++.++.+|++| .+++.+.+..    
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~   83 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK-REDLERTVKELKNI   83 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHHHhh
Confidence            46789999999999999999999999999999999987765543321    23578899999999 6666655531    


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|++|||||....        ++|+..+++|+.+.+.+++++    ++.+.++||++||...+..   .         
T Consensus        84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~---~---------  151 (263)
T PRK08339         84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEP---I---------  151 (263)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCC---C---------
Confidence             39999999996431        356678899999988877776    4455679999999864321   1         


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---------------eccccccccCCCCHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---------------METEDTLYEGTISRDQ  259 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---------------~~~~~~~~~~~v~~~D  259 (301)
                      ..+..|..+|.+.+.+.+       .+||+++.|.||.+.+++......               ..........+..++|
T Consensus       152 ~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~d  231 (263)
T PRK08339        152 PNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIPLGRLGEPEE  231 (263)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCCcccCcCHHH
Confidence            113556777877765443       368999999999999875321100               0000111223568999


Q ss_pred             HHHHHHHHhcCCCCC---CcEEEee
Q 022216          260 VAEVAVEALLHPESS---YKVVEII  281 (301)
Q Consensus       260 va~~~~~~l~~~~~~---~~~~~v~  281 (301)
                      +|++++.++ ++...   ++++.+.
T Consensus       232 va~~v~fL~-s~~~~~itG~~~~vd  255 (263)
T PRK08339        232 IGYLVAFLA-SDLGSYINGAMIPVD  255 (263)
T ss_pred             HHHHHHHHh-cchhcCccCceEEEC
Confidence            999996555 44333   4444443

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.92  E-value=1.4e-24  Score=187.89  Aligned_cols=207  Identities=19%  Similarity=0.143  Sum_probs=145.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|++|||||+|+||+++++.|+++|++|++++|++++.++...   ....++.++++|++| .+++.+++.+      
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN-EDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999998865544322   133467889999999 7666655432      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHH----HHHHHHH-HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGT----VNLVEAC-RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~----~~l~~a~-~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      ++|+||||||....        ++++..+++|+.++    ..+++++ ++.+.++||++||...+...            
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~------------  151 (262)
T PRK13394         84 SVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEAS------------  151 (262)
T ss_pred             CCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCC------------
Confidence            39999999996432        23455678999994    4455555 56667899999997543211            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----c-----------cccccccCCCCHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----E-----------TEDTLYEGTISRD  258 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~-----------~~~~~~~~~v~~~  258 (301)
                      .....|+.+|.+.+.+.+       ..++++++|+||.++++.....+..     .           ........+++++
T Consensus       152 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (262)
T PRK13394        152 PLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGKTVDGVFTTVE  231 (262)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcCCCCCCCCCHH
Confidence            123456777777765543       3589999999999999854322100     0           0011224589999


Q ss_pred             HHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          259 QVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       259 Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      |++++++.++..+.  ..++.|++.++
T Consensus       232 dva~a~~~l~~~~~~~~~g~~~~~~~g  258 (262)
T PRK13394        232 DVAQTVLFLSSFPSAALTGQSFVVSHG  258 (262)
T ss_pred             HHHHHHHHHcCccccCCcCCEEeeCCc
Confidence            99999987776543  23677777763

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.92  E-value=3e-24  Score=187.59  Aligned_cols=196  Identities=18%  Similarity=0.204  Sum_probs=144.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      .+|++|||||+|+||++++++|+++|++|++++|++++...+......++..+.+|++| .+++.+.+.+      ++|+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~~~d~   81 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTD-FDAIDAVVADAEATFGPIDV   81 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC-HHHHHHHHHHHHHHhCCCCE
Confidence            46899999999999999999999999999999999877665544334578899999999 7766665542      3899


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||||||....        +++..++++|+.|+.++++++.    +.+.++||++||.+.+...            .+...
T Consensus        82 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~------------~~~~~  149 (277)
T PRK06180         82 LVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM------------PGIGY  149 (277)
T ss_pred             EEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCC------------CCcch
Confidence            9999997432        1244568999999999999963    4456799999998644221            12467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----ccc------------cccccCCCCHHHHHH
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----ETE------------DTLYEGTISRDQVAE  262 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~~~------------~~~~~~~v~~~Dva~  262 (301)
                      |+.+|.+.|.+.+       .+|+++++|+||.+.+++.......     ...            ......+.+++|+|+
T Consensus       150 Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~  229 (277)
T PRK06180        150 YCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREAKSGKQPGDPAKAAQ  229 (277)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHhhccCCCCCHHHHHH
Confidence            8899998886553       2599999999999988753221100     000            001123568999999


Q ss_pred             HHHHHhcCCCC
Q 022216          263 VAVEALLHPES  273 (301)
Q Consensus       263 ~~~~~l~~~~~  273 (301)
                      +++.++..+..
T Consensus       230 ~~~~~l~~~~~  240 (277)
T PRK06180        230 AILAAVESDEP  240 (277)
T ss_pred             HHHHHHcCCCC
Confidence            99998887653

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.92  E-value=2.5e-24  Score=185.41  Aligned_cols=194  Identities=14%  Similarity=0.125  Sum_probs=138.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      .+++|++|||||+++||++++++|+++|++|++++|+... ..+.......++.++.+|++| .+++.+++..      +
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQ-QKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC-HHHHHHHHHHHHHHcCC
Confidence            4568999999999999999999999999999988876432 222222234578899999999 7666655532      4


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|++|||||....        ++|+.++++|+.+++.+++++.+    .+ .++||++||...+....            
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------------  151 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGI------------  151 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCC------------
Confidence            9999999996432        35777899999999999888742    33 36999999987553221            


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhc
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ....|..+|.+.+.+.+       .+|++++.|+||++.+++........      ........+..++|+|++++.++.
T Consensus       152 ~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~peeva~~~~~L~s  231 (251)
T PRK12481        152 RVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIFLSS  231 (251)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            12467888888876553       46999999999999988643211000      001112346789999999965553

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.92  E-value=2.9e-24  Score=185.34  Aligned_cols=207  Identities=16%  Similarity=0.079  Sum_probs=146.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|++++.++...+   ...++.++.+|++| .+++.+++..      
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD-EEAINAGIDYAVETFG   80 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            4578999999999999999999999999999999998765543321   34678899999999 7776665542      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||||....        +++...+++|+.++.++++.+    ++.+.++||++||...+...            .
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~------------~  148 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGS------------A  148 (258)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCC------------C
Confidence            39999999986432        123446789999966666655    45567899999998654321            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-------c---------cccccccCCCCHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-------E---------TEDTLYEGTISRDQ  259 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-------~---------~~~~~~~~~v~~~D  259 (301)
                      ..+.|..+|.+.+.+.+       ..++++++++||.+.++...+....       .         ........+++++|
T Consensus       149 ~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  228 (258)
T PRK12429        149 GKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLPLVPQKRFTTVEE  228 (258)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhccCCccccCCHHH
Confidence            23456666766664432       3689999999999999764322110       0         00112235899999


Q ss_pred             HHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          260 VAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       260 va~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +|++++.++....  ..++.|++.++
T Consensus       229 ~a~~~~~l~~~~~~~~~g~~~~~~~g  254 (258)
T PRK12429        229 IADYALFLASFAAKGVTGQAWVVDGG  254 (258)
T ss_pred             HHHHHHHHcCccccCccCCeEEeCCC
Confidence            9999987776543  34677877763

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.92  E-value=1.3e-24  Score=187.79  Aligned_cols=207  Identities=16%  Similarity=0.131  Sum_probs=149.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +.+|++|||||+|+||+++++.|+++|++|++++|+.+..++.......++.++.+|++| .+++.+++..      ++|
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTR-QDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            457899999999999999999999999999999999877665443334568899999999 6666555542      399


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----C-CCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----G-VNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +||||||....        ++++.++++|+.++.++++++.+.    + .++||++||.....   +         ..+.
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~---~---------~~~~  150 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR---G---------EALV  150 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC---C---------CCCC
Confidence            99999986431        245667899999999999998532    1 25899999974211   1         1234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce------e-e--------ccccccccCCCCHHHHHH
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI------I-M--------ETEDTLYEGTISRDQVAE  262 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~------~-~--------~~~~~~~~~~v~~~Dva~  262 (301)
                      ..|+.+|.+.+.+.+       .+|+++++|+||+++|++.....      . .        .........+.+++|+|+
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~  230 (257)
T PRK07067        151 SHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPLGRMGVPDDLTG  230 (257)
T ss_pred             chhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCCCCccCHHHHHH
Confidence            678899998876653       36899999999999998533210      0 0        000112345779999999


Q ss_pred             HHHHHhcCCC--CCCcEEEeecC
Q 022216          263 VAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       263 ~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++.++..+.  ..++++++.++
T Consensus       231 ~~~~l~s~~~~~~~g~~~~v~gg  253 (257)
T PRK07067        231 MALFLASADADYIVAQTYNVDGG  253 (257)
T ss_pred             HHHHHhCcccccccCcEEeecCC
Confidence            9976665432  34677877664

>PRK05717 oxidoreductase; Validated

Probab=99.92  E-value=3.8e-24  Score=184.63  Aligned_cols=208  Identities=14%  Similarity=0.134  Sum_probs=146.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      .++++|+++||||+|+||++++++|+++|++|++++|+..+..+.......++.++.+|++| .+++.+++..      +
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVAD-EAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHhCC
Confidence            56789999999999999999999999999999999888765554333234568899999999 6665443322      3


Q ss_pred             CCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|+||||||....          ++|+..+++|+.+++++++++.+   ...++||++||...+...            .
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~------------~  152 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSE------------P  152 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCC------------C
Confidence            8999999996532          13456789999999999999953   223689999998643211            1


Q ss_pred             hhhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ....|+.+|.+.+.+.+.      .++++++|+||++.+++........     ..........+++|+|.++..++...
T Consensus       153 ~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~  232 (255)
T PRK05717        153 DTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAEPLSEADHAQHPAGRVGTVEDVAAMVAWLLSRQ  232 (255)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccchHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCch
Confidence            135689999999876642      3599999999999998643221100     00111234568999999996666432


Q ss_pred             C--CCCcEEEeec
Q 022216          272 E--SSYKVVEIIS  282 (301)
Q Consensus       272 ~--~~~~~~~v~~  282 (301)
                      .  ..++.+.+.+
T Consensus       233 ~~~~~g~~~~~~g  245 (255)
T PRK05717        233 AGFVTGQEFVVDG  245 (255)
T ss_pred             hcCccCcEEEECC
Confidence            2  2355666643

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.92  E-value=1.2e-24  Score=187.76  Aligned_cols=208  Identities=17%  Similarity=0.131  Sum_probs=149.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|++++.++...   ..+.++.++.+|++| .+++.+++.+     
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   85 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999998766544321   123468889999999 7666666542     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|+||||||....        ++++.++++|+.++.++++++.+    .+.++||++||...+..            .
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------------~  153 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALA------------R  153 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccC------------C
Confidence             39999999996532        23455678999999999998854    35679999999753211            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHh
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ..+..|+.+|.+.+.+.+       .+|+++++|+||.+.++.........      ........+..++|+|++++.++
T Consensus       154 ~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  233 (255)
T PRK07523        154 PGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPAGRWGKVEELVGACVFLA  233 (255)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHc
Confidence            224678889988886553       46899999999999998643211100      01112234678999999997776


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      ..+.  ..++++++.++
T Consensus       234 ~~~~~~~~G~~i~~~gg  250 (255)
T PRK07523        234 SDASSFVNGHVLYVDGG  250 (255)
T ss_pred             CchhcCccCcEEEECCC
Confidence            5432  24567776653

>PRK06128 oxidoreductase; Provisional

Probab=99.92  E-value=4.5e-24  Score=188.56  Aligned_cols=208  Identities=13%  Similarity=0.107  Sum_probs=146.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch--hhh---ccccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~--~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++|++|||||+|+||+++++.|+++|++|++..++.+.  .++   .......++.++.+|++| .+++.+++..   
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~  130 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD-EAFCRQLVERAVK  130 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHHHH
Confidence            4678999999999999999999999999999987765432  111   121234568889999999 6666555432   


Q ss_pred             ---CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 ---DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                         ++|+||||||....         ++|+.++++|+.+++++++++.+.  ..++||++||...|....          
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~----------  200 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP----------  200 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC----------
Confidence               39999999996421         245678899999999999999653  236999999997664221          


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee------eccccccccCCCCHHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII------METEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~------~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                        .+..|+.+|.+.+.+.+       ..|+++++|+||++.|++......      ..........+.+++|+|.+++.+
T Consensus       201 --~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~l  278 (300)
T PRK06128        201 --TLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETPMKRPGQPVEMAPLYVLL  278 (300)
T ss_pred             --CchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence              23568899998886653       369999999999999987432110      000111223456899999999766


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +....  ..++++++.++
T Consensus       279 ~s~~~~~~~G~~~~v~gg  296 (300)
T PRK06128        279 ASQESSYVTGEVFGVTGG  296 (300)
T ss_pred             hCccccCccCcEEeeCCC
Confidence            54332  24566766653

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.92  E-value=1.2e-24  Score=171.71  Aligned_cols=213  Identities=18%  Similarity=0.188  Sum_probs=156.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC--CCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      .+..|.++||||+++||+++++.|++.|++|.+.+++....++.....+  .+-..+.+|+++ .+.+...+++      
T Consensus        11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~-a~~v~~~l~e~~k~~g   89 (256)
T KOG1200|consen   11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSK-AHDVQNTLEEMEKSLG   89 (256)
T ss_pred             HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCc-HHHHHHHHHHHHHhcC
Confidence            4567899999999999999999999999999999988776555433222  356788999999 5554443322      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----C--CCEEEEecccccccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----G--VNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~--~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      .+++||||||+..+        ++|...+.+|+.|++.+.|++.+.    +  ..+||++||+--   ..++..+..|..
T Consensus        90 ~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVG---kiGN~GQtnYAA  166 (256)
T KOG1200|consen   90 TPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVG---KIGNFGQTNYAA  166 (256)
T ss_pred             CCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhc---ccccccchhhhh
Confidence            49999999998764        578899999999999999998543    2  239999999862   334444566766


Q ss_pred             cchhhHHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCcee---eccccccccC-CCCHHHHHHHHHHHhcCCCCCCc
Q 022216          201 LNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNII---METEDTLYEG-TISRDQVAEVAVEALLHPESSYK  276 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~~~i~~~~irpg~v~~~~~~~~~~---~~~~~~~~~~-~v~~~Dva~~~~~~l~~~~~~~~  276 (301)
                      .+. +..+.+|.++.++. +.+||++.+.||++.+|+......   .......+.+ +-..+|+|+.+ .+|.++.+.|.
T Consensus       167 sK~-GvIgftktaArEla-~knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~~EevA~~V-~fLAS~~ssYi  243 (256)
T KOG1200|consen  167 SKG-GVIGFTKTAARELA-RKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANLV-LFLASDASSYI  243 (256)
T ss_pred             hcC-ceeeeeHHHHHHHh-hcCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCCHHHHHHHH-HHHhccccccc
Confidence            664 55678888887755 589999999999999998654321   1111222222 44789999998 67778876654


Q ss_pred             ---EEEeec
Q 022216          277 ---VVEIIS  282 (301)
Q Consensus       277 ---~~~v~~  282 (301)
                         ++++.+
T Consensus       244 TG~t~evtG  252 (256)
T KOG1200|consen  244 TGTTLEVTG  252 (256)
T ss_pred             cceeEEEec
Confidence               455554

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.92  E-value=3.7e-24  Score=185.45  Aligned_cols=206  Identities=18%  Similarity=0.122  Sum_probs=146.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +++|+++||||+|+||++++++|+++|++|++++|+.++.++.......++.++.+|++| .+++.+.+..      ++|
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id   82 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITD-DAAIERAVATVVARFGRVD   82 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence            468999999999999999999999999999999999876665543334578899999999 6666555432      399


Q ss_pred             EEEEccCCCCC-------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          138 AVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       138 ~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      +||||||....       ++|...+++|+.+++++++++..   .+.++||++||.......            .....|
T Consensus        83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~~~~~Y  150 (261)
T PRK08265         83 ILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ------------TGRWLY  150 (261)
T ss_pred             EEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------------CCCchh
Confidence            99999996432       24556789999999999988743   334799999998643211            113568


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--------ccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--------ETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--------~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ..+|.+.+.+.+       ..|++++.|+||++.+++.......        .........+..++|+|++++.++..+.
T Consensus       151 ~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~  230 (261)
T PRK08265        151 PASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAPFHLLGRVGDPEEVAQVVAFLCSDAA  230 (261)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcccCCCCCccCHHHHHHHHHHHcCccc
Confidence            888888876554       2589999999999998864321100        0000112234679999999976664332


Q ss_pred             --CCCcEEEeec
Q 022216          273 --SSYKVVEIIS  282 (301)
Q Consensus       273 --~~~~~~~v~~  282 (301)
                        ..++++.+.+
T Consensus       231 ~~~tG~~i~vdg  242 (261)
T PRK08265        231 SFVTGADYAVDG  242 (261)
T ss_pred             cCccCcEEEECC
Confidence              3455555544

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.92  E-value=4.6e-24  Score=184.59  Aligned_cols=194  Identities=21%  Similarity=0.129  Sum_probs=140.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.+..++....     ...++.++.+|++| .+++.+.+..   
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~   82 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD-AASVAAAVAAAEE   82 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC-HHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999987765543321     23568899999999 6666655531   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                         ++|+||||||....        ++|+..+++|+.+++++++++.    +.+.++||++||...+...          
T Consensus        83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  152 (260)
T PRK07063         83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKII----------  152 (260)
T ss_pred             HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCC----------
Confidence               39999999996421        3466778999999999999874    3445799999998643211          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc----------ccccccCCCCHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET----------EDTLYEGTISRDQVAE  262 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~----------~~~~~~~~v~~~Dva~  262 (301)
                        .....|..+|.+.+.+.+       ..||+++.|+||++.+++.........          .......+..++|+|+
T Consensus       153 --~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~va~  230 (260)
T PRK07063        153 --PGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPMKRIGRPEEVAM  230 (260)
T ss_pred             --CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCCCCCCCHHHHHH
Confidence              123568888988876653       358999999999999886432110000          0011223568999999


Q ss_pred             HHHHHhc
Q 022216          263 VAVEALL  269 (301)
Q Consensus       263 ~~~~~l~  269 (301)
                      +++.++.
T Consensus       231 ~~~fl~s  237 (260)
T PRK07063        231 TAVFLAS  237 (260)
T ss_pred             HHHHHcC
Confidence            9966554

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.2e-23  Score=183.53  Aligned_cols=195  Identities=16%  Similarity=0.206  Sum_probs=142.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|++|||||+|+||++++++|+++|++|++.+|+.+.+++...   ....++.++.+|++| .+++.+++..      
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH-REEVTHLADEAFRLLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence            568999999999999999999999999999999998766554332   123468889999999 7666655432      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      ++|+||||||....        ++++..+++|+.|+.++++++.    +.+ .++||++||...+...            
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~------------  150 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN------------  150 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCC------------
Confidence            38999999996432        2345667999999999999874    333 4789999998754321            


Q ss_pred             chhhHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCCCceee-------------ccccccccCCCCHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTGNIIM-------------ETEDTLYEGTISRDQVA  261 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~~~~~~-------------~~~~~~~~~~v~~~Dva  261 (301)
                      .+.+.|+.+|.+.+.+.       ...|+++++|+||.+.+++..+....             .........+++++|+|
T Consensus       151 ~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva  230 (275)
T PRK05876        151 AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIA  230 (275)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhcCccccccccccccccccccccCCCHHHHH
Confidence            23467888898754332       23689999999999999864332100             00001123468999999


Q ss_pred             HHHHHHhcCC
Q 022216          262 EVAVEALLHP  271 (301)
Q Consensus       262 ~~~~~~l~~~  271 (301)
                      +.++.++..+
T Consensus       231 ~~~~~ai~~~  240 (275)
T PRK05876        231 QLTADAILAN  240 (275)
T ss_pred             HHHHHHHHcC
Confidence            9999999765

>PLN02253 xanthoxin dehydrogenase

Probab=99.92  E-value=6.9e-24  Score=185.51  Aligned_cols=207  Identities=16%  Similarity=0.104  Sum_probs=144.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.+..++....  ...++.++++|++| .+++.+++..      
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV-EDDVSRAVDFTVDKFG   93 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC-HHHHHHHHHHHHHHhC
Confidence            45689999999999999999999999999999999886654433221  23468899999999 7777666542      


Q ss_pred             CCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      ++|+||||||....          ++++.++++|+.|++++++++.+    .+.+++|++||....-   +.        
T Consensus        94 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~---~~--------  162 (280)
T PLN02253         94 TLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI---GG--------  162 (280)
T ss_pred             CCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc---cC--------
Confidence            49999999996421          23456789999999999988753    3346899999975321   11        


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec--------------c-ccccccCCCCHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME--------------T-EDTLYEGTISRD  258 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~--------------~-~~~~~~~~v~~~  258 (301)
                       .....|+.+|.+.|.+.+       ..|++++.|+||.+.+++........              . ........++++
T Consensus       163 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (280)
T PLN02253        163 -LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANLKGVELTVD  241 (280)
T ss_pred             -CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCCcCCCCCHH
Confidence             112468899999987664       25899999999999987532111000              0 001111247899


Q ss_pred             HHHHHHHHHhcCCC--CCCcEEEeec
Q 022216          259 QVAEVAVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       259 Dva~~~~~~l~~~~--~~~~~~~v~~  282 (301)
                      |+|++++.++..+.  ..++++.+.+
T Consensus       242 dva~~~~~l~s~~~~~i~G~~i~vdg  267 (280)
T PLN02253        242 DVANAVLFLASDEARYISGLNLMIDG  267 (280)
T ss_pred             HHHHHHHhhcCcccccccCcEEEECC
Confidence            99999966654322  2455666654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.92  E-value=4.1e-23  Score=181.16  Aligned_cols=195  Identities=21%  Similarity=0.284  Sum_probs=149.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-----CC-CCEEEE
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-----DD-SEAVVC  141 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~-~d~Vi~  141 (301)
                      +||||||||+||++++++|+++|++|+++.|++++..      ..+++.+.+|++| .+++.+++.     .+ +|.|+|
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~------~~~~~~~~~d~~d-~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA------GPNEKHVKFDWLD-EDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc------CCCCccccccCCC-HHHHHHHHhcccCcCCceeEEEE
Confidence            4899999999999999999999999999999987542      2467778899999 899999884     23 899999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      +++....         ......+++++|++.|++|||++||..++..   .                ..+...|+++++.
T Consensus        74 ~~~~~~~---------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~---~----------------~~~~~~~~~l~~~  125 (285)
T TIGR03649        74 VAPPIPD---------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG---G----------------PAMGQVHAHLDSL  125 (285)
T ss_pred             eCCCCCC---------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC---C----------------chHHHHHHHHHhc
Confidence            9864321         1345678999999999999999998653211   0                0123456677775


Q ss_pred             -CCcEEEEecCcccCCCCCC---------ceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCH
Q 022216          222 -GINYTIIRPGGLRNEPPTG---------NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSY  291 (301)
Q Consensus       222 -~i~~~~irpg~v~~~~~~~---------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~  291 (301)
                       |++++++||++++++....         ............++++++|+|+++..+|..+...+++|++.++   +.+|+
T Consensus       126 ~gi~~tilRp~~f~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~l~g~---~~~s~  202 (285)
T TIGR03649       126 GGVEYTVLRPTWFMENFSEEFHVEAIRKENKIYSATGDGKIPFVSADDIARVAYRALTDKVAPNTDYVVLGP---ELLTY  202 (285)
T ss_pred             cCCCEEEEeccHHhhhhcccccccccccCCeEEecCCCCccCcccHHHHHHHHHHHhcCCCcCCCeEEeeCC---ccCCH
Confidence             9999999999888653211         1111122233356999999999999999887666788999885   99999


Q ss_pred             HHHHHHhhc
Q 022216          292 EDLFGSIKQ  300 (301)
Q Consensus       292 ~e~~~~i~~  300 (301)
                      +|+++.+++
T Consensus       203 ~eia~~l~~  211 (285)
T TIGR03649       203 DDVAEILSR  211 (285)
T ss_pred             HHHHHHHHH
Confidence            999999875

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.91  E-value=6.7e-24  Score=184.92  Aligned_cols=191  Identities=18%  Similarity=0.171  Sum_probs=141.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      +++++++|||||+|+||++++++|+++|++|++++|++++.++..... ..+.++.+|++| .+++.+.+..      ++
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   79 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL-GLVVGGPLDVTD-PASFAAFLDAVEADLGPI   79 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-ccceEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            356899999999999999999999999999999999887765543211 257889999999 6665444322      39


Q ss_pred             CEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |++|||||.....        ++..++++|+.|+.++++++    ++.+.++||++||...+...            ...
T Consensus        80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~  147 (273)
T PRK07825         80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPV------------PGM  147 (273)
T ss_pred             CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCC------------CCC
Confidence            9999999975421        24456789999998888776    45567899999998643211            123


Q ss_pred             hHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          205 GLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ..|..+|.+.+.+.       +..|+++++|+||++.+++..+..     ......+++++|+|+.++.++.++.
T Consensus       148 ~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~~-----~~~~~~~~~~~~va~~~~~~l~~~~  217 (273)
T PRK07825        148 ATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGTG-----GAKGFKNVEPEDVAAAIVGTVAKPR  217 (273)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhcccc-----cccCCCCCCHHHHHHHHHHHHhCCC
Confidence            56778887766443       346999999999999887644321     1112247899999999999998764

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.91  E-value=1.1e-23  Score=198.81  Aligned_cols=235  Identities=18%  Similarity=0.248  Sum_probs=165.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC---eEEEEEeCCchh---h----hccc---------c--------CCCCeEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKA---K----TTLS---------K--------DNPSLQI  116 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~---~V~~~~r~~~~~---~----~~~~---------~--------~~~~~~~  116 (301)
                      +++|+|||||||||||++++++|++.+.   +|+++.|.....   +    ++..         .        ...++.+
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            4789999999999999999999998753   789999965321   1    1110         0        1357899


Q ss_pred             EEccCCCC-----hHhHHHHhcCCCCEEEEccCCCC-CCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEeccccccccc
Q 022216          117 VKADVTEG-----SAKLSEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAA  189 (301)
Q Consensus       117 ~~~Dl~~~-----~~~~~~~~~~~~d~Vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~  189 (301)
                      +.+|++++     ++....+..+ +|+|||+|+... ..++...+++|+.|+.+++++|++.+ .++||++||.++||..
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~~-vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~  275 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAKE-VDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQR  275 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHhc-CCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCC
Confidence            99999984     2445555567 999999998654 33456678999999999999998864 6899999999999876


Q ss_pred             CCCCCCcchh-----------------------------------h----------------------cchhhHHHHHHH
Q 022216          190 MGQILNPAYI-----------------------------------F----------------------LNVFGLTLIAKL  212 (301)
Q Consensus       190 ~~~~~~~~~~-----------------------------------~----------------------~~~~~~y~~sK~  212 (301)
                      .+...+..|+                                   .                      ...-+.|..+|.
T Consensus       276 ~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~  355 (605)
T PLN02503        276 QGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKA  355 (605)
T ss_pred             CCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHH
Confidence            5321111111                                   0                      011267999999


Q ss_pred             HHHHHHHHc--CCcEEEEecCcccCCCCC-------C-----c-ee---------eccccccccCCCCHHHHHHHHHHHh
Q 022216          213 QAEQYIRKS--GINYTIIRPGGLRNEPPT-------G-----N-II---------METEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       213 ~~e~~~~~~--~i~~~~irpg~v~~~~~~-------~-----~-~~---------~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      .+|+++++.  +++++++||+.|.+....       +     . ..         +........+.+++|.++++++.++
T Consensus       356 lAE~lV~~~~~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a~  435 (605)
T PLN02503        356 MGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNATLAAM  435 (605)
T ss_pred             HHHHHHHHhcCCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHHHHHHH
Confidence            999999753  799999999988442110       1     0 00         1112233345789999999998774


Q ss_pred             cC----CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          269 LH----PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       269 ~~----~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ..    ....+.+||++++ .-.+++|.|+.+.+.+
T Consensus       436 a~~~~~~~~~~~vYn~ts~-~~nP~t~~~~~~~~~~  470 (605)
T PLN02503        436 AKHGGAAKPEINVYQIASS-VVNPLVFQDLARLLYE  470 (605)
T ss_pred             HhhhcccCCCCCEEEeCCC-CCCCeEHHHHHHHHHH
Confidence            32    1124689999873 2388999999998764

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=2.2e-23  Score=178.52  Aligned_cols=207  Identities=20%  Similarity=0.200  Sum_probs=150.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh----ccccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++|+||||||+|+||++++++|+++|++|+++.|+..+..+    .......++.++.+|++| .+++.+.+.+     
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~   82 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTD-KAALEAAVAAAVERF   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCC-HHHHHHHHHHHHHHc
Confidence            356899999999999999999999999999887776553221    111134578899999999 7777665532     


Q ss_pred             -CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|+||||||.....        ++...+++|+.++.++++++    ++.+.++||++||...+...            
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~------------  150 (249)
T PRK12825         83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGW------------  150 (249)
T ss_pred             CCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCC------------
Confidence             389999999964321        23456789999999999887    45567899999998765321            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc--c--cccccCCCCHHHHHHHHHHHhcC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET--E--DTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~--~--~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .....|..+|...+.+++       +.+++++++|||+++|+..........  .  ......+++++|+++++..++..
T Consensus       151 ~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~  230 (249)
T PRK12825        151 PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAREAKDAETPLGRSGTPEDIARAVAFLCSD  230 (249)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhHHhhhccCCCCCCcCHHHHHHHHHHHhCc
Confidence            124668888888775552       368999999999999987543321110  0  11223478999999999888865


Q ss_pred             CC--CCCcEEEeecC
Q 022216          271 PE--SSYKVVEIISR  283 (301)
Q Consensus       271 ~~--~~~~~~~v~~~  283 (301)
                      +.  ..+++|++.++
T Consensus       231 ~~~~~~g~~~~i~~g  245 (249)
T PRK12825        231 ASDYITGQVIEVTGG  245 (249)
T ss_pred             cccCcCCCEEEeCCC
Confidence            42  45888999875

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.91  E-value=1.4e-23  Score=180.15  Aligned_cols=206  Identities=17%  Similarity=0.141  Sum_probs=144.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.. ...+.......++.++.+|++| .+++.+.+..      +
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSD-IEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999999999999998752 1122222234578899999999 7666644431      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|+||||||....        ++++..+++|+.+..++++++.+    .+ .++||++||...|....            
T Consensus        81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------------  148 (248)
T TIGR01832        81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI------------  148 (248)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC------------
Confidence            9999999997432        23556789999999999998843    33 46999999987664321            


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhc
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ....|..+|.+.+.+.+       .+|++++.|+||++.+++........      ........+.+++|+|++++.++.
T Consensus       149 ~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s  228 (248)
T TIGR01832       149 RVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILERIPAGRWGTPDDIGGPAVFLAS  228 (248)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC
Confidence            12467889998886653       25899999999999998643211000      001112357899999999977765


Q ss_pred             CCC--CCCcEEEee
Q 022216          270 HPE--SSYKVVEII  281 (301)
Q Consensus       270 ~~~--~~~~~~~v~  281 (301)
                      ...  ..++++.+.
T Consensus       229 ~~~~~~~G~~i~~d  242 (248)
T TIGR01832       229 SASDYVNGYTLAVD  242 (248)
T ss_pred             ccccCcCCcEEEeC
Confidence            332  234444443

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07985 oxidoreductase; Provisional

Probab=99.91  E-value=8.4e-24  Score=186.26  Aligned_cols=206  Identities=17%  Similarity=0.172  Sum_probs=142.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc--hhhhc---cccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--KAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~--~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++|++|||||+|+||++++++|+++|++|++..|+..  ..+++   ......++.++.+|++| .+++.+++..   
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~  124 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD-EKFARSLVHEAHK  124 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence            367899999999999999999999999999998776532  22221   11234567889999999 6655544332   


Q ss_pred             ---CCCEEEEccCCCC---------CCCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 ---DSEAVVCATGFQP---------GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~---------~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                         ++|++|||||...         .++|+..+++|+.++.++++++.+.  ..++||++||...+...           
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~-----------  193 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS-----------  193 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC-----------
Confidence               3999999998632         1345678899999999999998642  22699999998765322           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc-----eeec-cccccccCCCCHHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN-----IIME-TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~-----~~~~-~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                       .....|+.+|.+.+.+.+       .+|+++++|+||++.|++....     .... ........+..++|+|++++.+
T Consensus       194 -~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~r~~~pedva~~~~fL  272 (294)
T PRK07985        194 -PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYL  272 (294)
T ss_pred             -CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCCCCCCCCHHHHHHHHHhh
Confidence             113568899998876553       3699999999999999863211     0000 0011112357899999999655


Q ss_pred             hcCCCCC---CcEEEeec
Q 022216          268 LLHPESS---YKVVEIIS  282 (301)
Q Consensus       268 l~~~~~~---~~~~~v~~  282 (301)
                      + ++...   ++++.+.+
T Consensus       273 ~-s~~~~~itG~~i~vdg  289 (294)
T PRK07985        273 A-SQESSYVTAEVHGVCG  289 (294)
T ss_pred             h-ChhcCCccccEEeeCC
Confidence            5 44333   44444443

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.91  E-value=6.7e-24  Score=185.58  Aligned_cols=204  Identities=22%  Similarity=0.276  Sum_probs=146.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHH---H---hc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSE---A---IG  133 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~---~---~~  133 (301)
                      +++++|||||+|+||+++++.|+++|++|++++|+++..++....     ...++.++.+|++| .+++.+   .   ++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD-QNSIHNFQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC-HHHHHHHHHHHHhcC
Confidence            478999999999999999999999999999999987765443211     13578999999999 665543   2   23


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      . +|+||||||....        +++...+++|+.++.++++++    ++.+.++||++||...+...            
T Consensus        81 ~-id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------  147 (280)
T PRK06914         81 R-IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGF------------  147 (280)
T ss_pred             C-eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCC------------
Confidence            4 8999999986542        123455789999999988886    55567899999997532111            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---ccc----------------cccccCCC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---ETE----------------DTLYEGTI  255 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~~~----------------~~~~~~~v  255 (301)
                      .+...|+.+|...+.+++       ..|+++++++||.+.++........   ...                ......+.
T Consensus       148 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (280)
T PRK06914        148 PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHINSGSDTFG  227 (280)
T ss_pred             CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHhhhhhccC
Confidence            124568889998887654       3589999999999999853321100   000                00112467


Q ss_pred             CHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          256 SRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      +++|+|++++.++.++... ..|++.++
T Consensus       228 ~~~dva~~~~~~~~~~~~~-~~~~~~~~  254 (280)
T PRK06914        228 NPIDVANLIVEIAESKRPK-LRYPIGKG  254 (280)
T ss_pred             CHHHHHHHHHHHHcCCCCC-cccccCCc
Confidence            9999999999999877643 56777653

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.7e-23  Score=180.53  Aligned_cols=209  Identities=20%  Similarity=0.126  Sum_probs=144.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.+. .++..   .....++.++.+|++| ++++.+.+..   
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~   82 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTEA   82 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999987643 22221   1124568889999999 6666654432   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                         ++|+||||||....        ++++.++++|+.+++.+++++.    +.+.++||++||.+.+....+        
T Consensus        83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------  154 (254)
T PRK06114         83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRG--------  154 (254)
T ss_pred             HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCC--------
Confidence               38999999996432        3456778999999998888763    345579999999864322111        


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                        .....|..+|.+.+.+.+       ..|+++++|+||++.+++....-...     ........+..++|+|++++.+
T Consensus       155 --~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l  232 (254)
T PRK06114        155 --LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQTPMQRMAKVDEMVGPAVFL  232 (254)
T ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence              013567888888776543       36899999999999998643210000     0111123356899999999665


Q ss_pred             hcCCCC---CCcEEEeec
Q 022216          268 LLHPES---SYKVVEIIS  282 (301)
Q Consensus       268 l~~~~~---~~~~~~v~~  282 (301)
                      + ++..   .|+++.+.+
T Consensus       233 ~-s~~~~~~tG~~i~~dg  249 (254)
T PRK06114        233 L-SDAASFCTGVDLLVDG  249 (254)
T ss_pred             c-CccccCcCCceEEECc
Confidence            5 4433   344444443

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.1e-23  Score=181.45  Aligned_cols=208  Identities=15%  Similarity=0.141  Sum_probs=144.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.++.++....   ...++.++.+|++| .+++.+++..     
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   84 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ-HQQVTSMLDQVTAEL   84 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999987765543321   23568889999999 6666555431     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||....        ++++.++++|+.+++.+++++.    +.+ .++||++||....-.  ..+       
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--~~~-------  155 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII--NVP-------  155 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC--CCC-------
Confidence             39999999996432        2455677899999999999874    222 358999999753210  000       


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec---cccccccCCCCHHHHHHHHHHHhcC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME---TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~---~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                       .....|+.+|.+.+.+.+       ..|++++.|+||.+.+++........   ........+..++|+|++++.++ +
T Consensus       156 -~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~L~-s  233 (253)
T PRK05867        156 -QQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTEYQPLWEPKIPLGRLGRPEELAGLYLYLA-S  233 (253)
T ss_pred             -CCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHc-C
Confidence             113568899998886654       35899999999999998643211100   00111234678999999996555 4


Q ss_pred             CCCC---CcEEEeec
Q 022216          271 PESS---YKVVEIIS  282 (301)
Q Consensus       271 ~~~~---~~~~~v~~  282 (301)
                      +...   ++++.+.+
T Consensus       234 ~~~~~~tG~~i~vdg  248 (253)
T PRK05867        234 EASSYMTGSDIVIDG  248 (253)
T ss_pred             cccCCcCCCeEEECC
Confidence            4333   44444443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=3.2e-23  Score=178.14  Aligned_cols=206  Identities=15%  Similarity=0.095  Sum_probs=147.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      ++++++|||||+|+||++++++|+++|++|++++|++++..+....  ...++.++.+|++| .+++.+++.+      +
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   81 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD-EADVEAAVAAALERFGS   81 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999999998765543321  13468899999999 7777665532      3


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|+||||||....         +++...+++|+.++.++++.+.    +.+.++||++||...+...            .
T Consensus        82 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~  149 (251)
T PRK07231         82 VDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPR------------P  149 (251)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCC------------C
Confidence            8999999986432         2345578999999888887774    3556899999998765422            2


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-----cccccccCCCCHHHHHHHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-----TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-----~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ....|..+|...+.+.+       ..+++++.++||.+.+++.......   .     ........+++++|+|++++.+
T Consensus       150 ~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l  229 (251)
T PRK07231        150 GLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATIPLGRLGTPEDIANAALFL  229 (251)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence            24567888888775543       2489999999999988764432110   0     0011123467999999999887


Q ss_pred             hcCCC--CCCcEEEeec
Q 022216          268 LLHPE--SSYKVVEIIS  282 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~  282 (301)
                      +..+.  ..++.+.+.+
T Consensus       230 ~~~~~~~~~g~~~~~~g  246 (251)
T PRK07231        230 ASDEASWITGVTLVVDG  246 (251)
T ss_pred             hCccccCCCCCeEEECC
Confidence            75443  2355555544

>PRK06196 oxidoreductase; Provisional

Probab=99.91  E-value=2.2e-23  Score=185.38  Aligned_cols=209  Identities=16%  Similarity=0.121  Sum_probs=144.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      ..+++|+|+||||+|+||++++++|+++|++|++++|+.++.++..... .++.++.+|++| .+++.+.+..      +
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-~~v~~~~~Dl~d-~~~v~~~~~~~~~~~~~   99 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI-DGVEVVMLDLAD-LESVRAFAERFLDSGRR   99 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-hhCeEEEccCCC-HHHHHHHHHHHHhcCCC
Confidence            3457899999999999999999999999999999999987665543211 348899999999 7766655531      4


Q ss_pred             CCEEEEccCCCC------CCCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          136 SEAVVCATGFQP------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       136 ~d~Vi~~Ag~~~------~~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +|+||||||...      .++++..+++|+.|++++++++    ++.+.++||++||...+.............+..++.
T Consensus       100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~  179 (315)
T PRK06196        100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYDKWL  179 (315)
T ss_pred             CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCChHH
Confidence            999999999642      1345667899999987777765    444557999999976432111100000012234567


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec--------cccccc-cCCCCHHHHHHHHHHHhc
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME--------TEDTLY-EGTISRDQVAEVAVEALL  269 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~--------~~~~~~-~~~v~~~Dva~~~~~~l~  269 (301)
                      .|+.+|.+.+.+.+       ..|+++++|+||++.|+.........        ...... ..+.+++|+|..++.++.
T Consensus       180 ~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~  259 (315)
T PRK06196        180 AYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPIDPGFKTPAQGAATQVWAAT  259 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhhhhhcCCHhHHHHHHHHHhc
Confidence            89999999886542       35899999999999998643211000        000001 124678999999988876


Q ss_pred             CCC
Q 022216          270 HPE  272 (301)
Q Consensus       270 ~~~  272 (301)
                      .+.
T Consensus       260 ~~~  262 (315)
T PRK06196        260 SPQ  262 (315)
T ss_pred             CCc
Confidence            554

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.91  E-value=3.2e-24  Score=184.48  Aligned_cols=169  Identities=23%  Similarity=0.270  Sum_probs=107.0

Q ss_pred             EEcCCchHHHHHHHHHHHCCC--eEEEEEeCCch---hhhc---ccc----------CCCCeEEEEccCCCC-----hHh
Q 022216           71 VAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDK---AKTT---LSK----------DNPSLQIVKADVTEG-----SAK  127 (301)
Q Consensus        71 VtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~---~~~~---~~~----------~~~~~~~~~~Dl~~~-----~~~  127 (301)
                      |||||||||++++++|++.+.  +|+++.|..+.   .+.+   ...          ...+++++.+|++++     ++.
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999986  99999998743   1111   110          157999999999983     255


Q ss_pred             HHHHhcCCCCEEEEccCCCC-CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCC--------CCcch
Q 022216          128 LSEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQI--------LNPAY  198 (301)
Q Consensus       128 ~~~~~~~~~d~Vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~--------~~~~~  198 (301)
                      +.+...+ +|+|||||+... ..+....+++|+.|+.++++.|.+.+.++|+|+||..+.+...+..        .....
T Consensus        81 ~~~L~~~-v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~  159 (249)
T PF07993_consen   81 YQELAEE-VDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLD  159 (249)
T ss_dssp             HHHHHHH---EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--EEE
T ss_pred             hhccccc-cceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccccccch
Confidence            5566677 999999998654 3355567799999999999999977667999999965555444321        11112


Q ss_pred             hhcchhhHHHHHHHHHHHHHHH----cCCcEEEEecCcccCCCCCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPTG  240 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~~  240 (301)
                      ......+.|..||+.+|+++++    .|++++++|||.+.|....+
T Consensus       160 ~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G  205 (249)
T PF07993_consen  160 PPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTG  205 (249)
T ss_dssp             --TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS
T ss_pred             hhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCc
Confidence            2234456899999999998864    39999999999999954433

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK06182 short chain dehydrogenase; Validated

Probab=99.91  E-value=4.1e-23  Score=179.98  Aligned_cols=201  Identities=21%  Similarity=0.259  Sum_probs=143.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      ++|+++||||+|+||++++++|+++|++|++++|+.+++.+...   .++.++.+|++| .+++.+.+..      ++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~---~~~~~~~~Dv~~-~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS---LGVHPLSLDVTD-EASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---CCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCE
Confidence            47899999999999999999999999999999999877665432   458899999999 7777666541      3999


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHHHHHH----HHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVE----ACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~----a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||||||....        ++++..+++|+.+...+++    .+++.+.++||++||...+..   .         .....
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~---~---------~~~~~  145 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIY---T---------PLGAW  145 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCC---C---------CCccH
Confidence            9999996532        2355678999999665555    456666789999999753211   1         11356


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCC---ceeeccc-----------------cccccCCCCHHH
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTG---NIIMETE-----------------DTLYEGTISRDQ  259 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~---~~~~~~~-----------------~~~~~~~v~~~D  259 (301)
                      |..+|.+.+.+.+       ..|+++++|+||++.|++...   .......                 ......+.+++|
T Consensus       146 Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (273)
T PRK06182        146 YHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRSTYGSGRLSDPSV  225 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHHhhccccCCCHHH
Confidence            8899999887642       468999999999999986421   1100000                 001123569999


Q ss_pred             HHHHHHHHhcCCCCCCcEEEeec
Q 022216          260 VAEVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       260 va~~~~~~l~~~~~~~~~~~v~~  282 (301)
                      +|++++.++.... ....|.++.
T Consensus       226 vA~~i~~~~~~~~-~~~~~~~g~  247 (273)
T PRK06182        226 IADAISKAVTARR-PKTRYAVGF  247 (273)
T ss_pred             HHHHHHHHHhCCC-CCceeecCc
Confidence            9999998887543 233455443

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.91  E-value=2.6e-23  Score=180.21  Aligned_cols=205  Identities=14%  Similarity=0.102  Sum_probs=143.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..+++......++.++++|++| .+++.+++..      ++|
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   81 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS-LDDHKEAVARCVAAFGKID   81 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence            468999999999999999999999999999999998876665543234568889999999 6555554431      399


Q ss_pred             EEEEccCCCC--------C-----CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhc
Q 022216          138 AVVCATGFQP--------G-----WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       138 ~Vi~~Ag~~~--------~-----~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      +||||||...        +     ++|+.++++|+.+++++++++.+.   ..+++|++||...+..            .
T Consensus        82 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~------------~  149 (262)
T TIGR03325        82 CLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYP------------N  149 (262)
T ss_pred             EEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecC------------C
Confidence            9999998632        0     135678999999999999998542   2267999988753311            1


Q ss_pred             chhhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCcee-ec--------c-----ccccccCCCCHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGNII-ME--------T-----EDTLYEGTISRDQVA  261 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~-~~--------~-----~~~~~~~~v~~~Dva  261 (301)
                      .....|..+|.+.+.+.+.      ..++++.|.||++.+++...... ..        .     .......+..++|+|
T Consensus       150 ~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva  229 (262)
T TIGR03325       150 GGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVLPIGRMPDAEEYT  229 (262)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhcCCCCCCCChHHhh
Confidence            1235688999999876642      24999999999999986432100 00        0     001122356899999


Q ss_pred             HHHHHHhcCCCC---CCcEEEee
Q 022216          262 EVAVEALLHPES---SYKVVEII  281 (301)
Q Consensus       262 ~~~~~~l~~~~~---~~~~~~v~  281 (301)
                      ++++.++..+..   .++++.+.
T Consensus       230 ~~~~~l~s~~~~~~~tG~~i~vd  252 (262)
T TIGR03325       230 GAYVFFATRGDTVPATGAVLNYD  252 (262)
T ss_pred             hheeeeecCCCcccccceEEEec
Confidence            999665544332   34444443

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.91  E-value=4.2e-23  Score=178.94  Aligned_cols=193  Identities=17%  Similarity=0.103  Sum_probs=139.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+.++.+++......++.++++|++| .+++.+.+..      ++|
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   82 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTS-YADNQRAVDQTVDAFGKLD   82 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHhcCCCC
Confidence            468999999999999999999999999999999998877665543334568899999999 6666555432      499


Q ss_pred             EEEEccCCCCC---------C----CCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhc
Q 022216          138 AVVCATGFQPG---------W----DLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       138 ~Vi~~Ag~~~~---------~----~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      +||||||+...         +    .|+.++++|+.+++.+++++.+.   ..++||++||...+...            
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------  150 (263)
T PRK06200         83 CFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG------------  150 (263)
T ss_pred             EEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------------
Confidence            99999996421         1    15567899999999999888532   23689999998754321            


Q ss_pred             chhhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCcee-------e-cc-------ccccccCCCCHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGNII-------M-ET-------EDTLYEGTISRDQV  260 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~-------~-~~-------~~~~~~~~v~~~Dv  260 (301)
                      .....|+.+|.+.+.+.+.      .+|+++.|.||++.+++......       . ..       .......+..++|+
T Consensus       151 ~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ev  230 (263)
T PRK06200        151 GGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAITPLQFAPQPEDH  230 (263)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCCCCCCCCCHHHH
Confidence            1235688999988866542      35999999999999886432100       0 00       00112235689999


Q ss_pred             HHHHHHHhc
Q 022216          261 AEVAVEALL  269 (301)
Q Consensus       261 a~~~~~~l~  269 (301)
                      |++++.++.
T Consensus       231 a~~~~fl~s  239 (263)
T PRK06200        231 TGPYVLLAS  239 (263)
T ss_pred             hhhhhheec
Confidence            999965554

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.6e-23  Score=178.69  Aligned_cols=218  Identities=17%  Similarity=0.160  Sum_probs=156.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      +|++|||||+|+||+++++.|+++|++|++++|++++.+++... ...++.++++|++| .+++.+.+.+      ++|+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTD-AASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            57899999999999999999999999999999988766544321 23468899999999 7766655542      3899


Q ss_pred             EEEccCCCCCC--------CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||||+|.....        ++...+++|+.+++++++++    ++.+.++||++||...+...             ....
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------~~~~  147 (257)
T PRK07074         81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL-------------GHPA  147 (257)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC-------------CCcc
Confidence            99999864321        22344679999999999888    33456789999997532110             0235


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------ccccccCCCCHHHHHHHHHHHhcCC-
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDTLYEGTISRDQVAEVAVEALLHP-  271 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~~~~~~v~~~Dva~~~~~~l~~~-  271 (301)
                      |+.+|.+.+.+.+       .+|++++.++||++.++..........       .......+++++|++++++.++... 
T Consensus       148 y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~  227 (257)
T PRK07074        148 YSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKWYPLQDFATPDDVANAVLFLASPAA  227 (257)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCchh
Confidence            7788888876553       258999999999999886432111000       0112245799999999997777532 


Q ss_pred             -CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          272 -ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       272 -~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                       ...++++++.+   +......|+++.+.+
T Consensus       228 ~~~~g~~~~~~~---g~~~~~~~~~~~~~~  254 (257)
T PRK07074        228 RAITGVCLPVDG---GLTAGNREMARTLTL  254 (257)
T ss_pred             cCcCCcEEEeCC---CcCcCChhhhhhhcc
Confidence             23466666665   499999999998865

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.3e-23  Score=179.05  Aligned_cols=204  Identities=16%  Similarity=0.126  Sum_probs=148.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+...+...   ....++.++.+|++| .+++.+.+..      
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   82 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD-PDSAKAMADATVSAFG   82 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999998765443321   123467889999999 6665554431      


Q ss_pred             CCCEEEEccCCCCC-----------CCCCCceeeehHHHHHHHHHHHHc----CCCEEEEecccccccccCCCCCCcchh
Q 022216          135 DSEAVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACRKR----GVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~-----------~~~~~~~~~N~~g~~~l~~a~~~~----~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                      ++|+||||||+...           ++++.++++|+.++.++++++.+.    +.++||++||...|.            
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------  150 (250)
T PRK07774         83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL------------  150 (250)
T ss_pred             CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC------------
Confidence            39999999996421           234456789999999999998543    457999999987552            


Q ss_pred             hcchhhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                         +.+.|+.+|.+.|.+.+.       .++++++++||.+.++.........     ........+.+++|+|++++.+
T Consensus       151 ---~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~  227 (250)
T PRK07774        151 ---YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLSRMGTPEDLVGMCLFL  227 (250)
T ss_pred             ---CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence               135688999999876642       4899999999999888644321100     0001112356899999999877


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..+++|++.++
T Consensus       228 ~~~~~~~~~g~~~~v~~g  245 (250)
T PRK07774        228 LSDEASWITGQIFNVDGG  245 (250)
T ss_pred             hChhhhCcCCCEEEECCC
Confidence            76532  36788888874

>PRK09186 flagellin modification protein A; Provisional

Probab=99.91  E-value=8e-24  Score=182.55  Aligned_cols=216  Identities=19%  Similarity=0.172  Sum_probs=143.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++|+||||||+|+||+++++.|+++|++|+++.|++++.++....     ....+.++.+|++| .+++.+++..    
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~   80 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD-QESLEEFLSKSAEK   80 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC-HHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999987765443221     12356678999999 7666665543    


Q ss_pred             --CCCEEEEccCCCCC-----------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcc
Q 022216          135 --DSEAVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-----------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                        ++|+|||||+....           +++...+++|+.+...+++++    ++.+.++||++||...+..... ...+.
T Consensus        81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-~~~~~  159 (256)
T PRK09186         81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKF-EIYEG  159 (256)
T ss_pred             cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccc-hhccc
Confidence              38999999974321           124456788998887776665    4456689999999765432111 00111


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcC
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .. ......|+.+|.+.+.+.+       ..++++++|+||.+.++.................+++++|+|++++.++.+
T Consensus       160 ~~-~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~  238 (256)
T PRK09186        160 TS-MTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEAFLNAYKKCCNGKGMLDPDDICGTLVFLLSD  238 (256)
T ss_pred             cc-cCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCHHHHHHHHhcCCccCCCCHHHhhhhHhheecc
Confidence            11 1112368999998887653       368999999999988754221100000011123578999999999877764


Q ss_pred             CC--CCCcEEEeec
Q 022216          271 PE--SSYKVVEIIS  282 (301)
Q Consensus       271 ~~--~~~~~~~v~~  282 (301)
                      ..  ..++.+.+.+
T Consensus       239 ~~~~~~g~~~~~~~  252 (256)
T PRK09186        239 QSKYITGQNIIVDD  252 (256)
T ss_pred             ccccccCceEEecC
Confidence            43  2355555444

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.6e-23  Score=181.39  Aligned_cols=205  Identities=20%  Similarity=0.208  Sum_probs=147.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|+++||||+|+||++++++|+++|++|+++.|+.+...+...   ....++.++.+|++| .+++.+.+..      
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   86 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD-PDSVKSFVAQAEEALG   86 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999998765443321   123468889999999 7777665542      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||||....        +++...+++|+.++.++++++.    +.+.++||++||...|...            .
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~------------~  154 (274)
T PRK07775         87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR------------P  154 (274)
T ss_pred             CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------------C
Confidence            38999999996432        1233456899999999988874    3445789999998765322            1


Q ss_pred             hhhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCce---ee---c----cccccccCCCCHHHHHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNI---IM---E----TEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~---~~---~----~~~~~~~~~v~~~Dva~~~~  265 (301)
                      ....|..+|.+.|.+.+.       .|+++++|+||.+.++......   ..   .    ........+++++|+|++++
T Consensus       155 ~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~  234 (274)
T PRK07775        155 HMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWGQARHDYFLRASDLARAIT  234 (274)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhcccccccccCHHHHHHHHH
Confidence            235688999999876642       3899999999998776432110   00   0    00111234789999999998


Q ss_pred             HHhcCCCCCCcEEEeec
Q 022216          266 EALLHPESSYKVVEIIS  282 (301)
Q Consensus       266 ~~l~~~~~~~~~~~v~~  282 (301)
                      .++.++. .+.+||+.-
T Consensus       235 ~~~~~~~-~~~~~~~~~  250 (274)
T PRK07775        235 FVAETPR-GAHVVNMEV  250 (274)
T ss_pred             HHhcCCC-CCCeeEEee
Confidence            8887764 456777765

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.5e-23  Score=180.06  Aligned_cols=196  Identities=23%  Similarity=0.307  Sum_probs=144.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      ++++++||||+|+||++++++|+++|++|++++|++++..     ...+++++++|++| .+++.+++.+      ++|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~~d~   76 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-----PIPGVELLELDVTD-DASVQAAVDEVIARAGRIDV   76 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----ccCCCeeEEeecCC-HHHHHHHHHHHHHhCCCCCE
Confidence            4679999999999999999999999999999999876543     23578899999999 7777666543      3899


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||||||....        +++...+++|+.|+.++++++    ++.+.++||++||...+...            .....
T Consensus        77 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~~  144 (270)
T PRK06179         77 LVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPA------------PYMAL  144 (270)
T ss_pred             EEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCC------------CCccH
Confidence            9999997532        234567899999999988885    55677899999998644211            12357


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc---------------cccccCCCCHHHHHHHH
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE---------------DTLYEGTISRDQVAEVA  264 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~---------------~~~~~~~v~~~Dva~~~  264 (301)
                      |+.+|.+.+.+.+       +.|+++++|+||++.++...+.......               .........++|+|+.+
T Consensus       145 Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~  224 (270)
T PRK06179        145 YAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKAVKKADAPEVVADTV  224 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence            8899999886653       3699999999999999864432110000               01112346889999999


Q ss_pred             HHHhcCCCCCCcEEE
Q 022216          265 VEALLHPESSYKVVE  279 (301)
Q Consensus       265 ~~~l~~~~~~~~~~~  279 (301)
                      +.++..+. ....|.
T Consensus       225 ~~~~~~~~-~~~~~~  238 (270)
T PRK06179        225 VKAALGPW-PKMRYT  238 (270)
T ss_pred             HHHHcCCC-CCeeEe
Confidence            88887654 233443

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.2e-23  Score=179.70  Aligned_cols=206  Identities=16%  Similarity=0.141  Sum_probs=146.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++++++||||+|+||+++++.|+++|++|+++ .|+.++.++....   ....+.++.+|++| .+++.++++.     
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~~~~~   82 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNS-IDGVKKLVEQLKNEL   82 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCC-HHHHHHHHHHHHHHh
Confidence            457899999999999999999999999999875 5665544332211   23568899999999 7777665541     


Q ss_pred             -------CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 -------DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 -------~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                             ++|+||||||.....        .++.++++|+.++.++++++.+.  ..+++|++||..++...        
T Consensus        83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~--------  154 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF--------  154 (254)
T ss_pred             ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC--------
Confidence                   389999999964321        23455679999999999998653  34689999998765322        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee------eccccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII------METEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~------~~~~~~~~~~~v~~~Dva~~~  264 (301)
                          .....|+.+|.+.+.+.+       ..++++++++||++.++.......      .......+..+.+++|+|+++
T Consensus       155 ----~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~  230 (254)
T PRK12746        155 ----TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNSSVFGRIGQVEDIADAV  230 (254)
T ss_pred             ----CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhcCCcCCCCCHHHHHHHH
Confidence                224568899999886543       358999999999999986432110      001112234466899999999


Q ss_pred             HHHhcCCC--CCCcEEEeec
Q 022216          265 VEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~  282 (301)
                      ..++..+.  ..+++|++.+
T Consensus       231 ~~l~~~~~~~~~g~~~~i~~  250 (254)
T PRK12746        231 AFLASSDSRWVTGQIIDVSG  250 (254)
T ss_pred             HHHcCcccCCcCCCEEEeCC
Confidence            76665432  2467888865

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.91  E-value=1.3e-23  Score=181.71  Aligned_cols=205  Identities=17%  Similarity=0.106  Sum_probs=140.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.. ..+..   ......+.++.+|++| .+++.+.+..     
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGGEALALTADLET-YAGAQAAMAAAVEAF   82 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCC-HHHHHHHHHHHHHHc
Confidence            356899999999999999999999999999999998753 22211   1123567889999999 6555544431     


Q ss_pred             -CCCEEEEccCCCC---------CCCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQP---------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~---------~~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||...         .+++...+++|+.++..+++++    ++.+.++||++||...++.            
T Consensus        83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------  150 (260)
T PRK12823         83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI------------  150 (260)
T ss_pred             CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC------------
Confidence             3999999998531         1234456789999988776665    4456679999999875531            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc--e-eecc--------------ccccccCCCC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN--I-IMET--------------EDTLYEGTIS  256 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~--~-~~~~--------------~~~~~~~~v~  256 (301)
                        ....|+.+|.+.+.+.+       ..|+++++|+||+++|++....  . ....              .......+.+
T Consensus       151 --~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (260)
T PRK12823        151 --NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKRYGT  228 (260)
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcccCCC
Confidence              12458899998887654       2489999999999999852100  0 0000              0111123458


Q ss_pred             HHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          257 RDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++|+|++++.++....  ..++++++.++
T Consensus       229 ~~dva~~~~~l~s~~~~~~~g~~~~v~gg  257 (260)
T PRK12823        229 IDEQVAAILFLASDEASYITGTVLPVGGG  257 (260)
T ss_pred             HHHHHHHHHHHcCcccccccCcEEeecCC
Confidence            9999999866664332  34667777653

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.2e-23  Score=179.79  Aligned_cols=207  Identities=12%  Similarity=0.086  Sum_probs=145.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|+++||||+|+||.+++++|+++|++|++++|++++.+++...   ...++.++.+|++| .+++.+++..     
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   81 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD-EAYAKALVALAVERF   81 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhc
Confidence            34689999999999999999999999999999999988766544321   23568899999999 6666655541     


Q ss_pred             -CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||....         ++++.++++|+.+.+.+++++    ++.+.++||++||...+...           
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~-----------  150 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAG-----------  150 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccC-----------
Confidence             49999999996421         235667899999988887765    44556799999998644211           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ...+..|..+|.+.+.+.+       ..|++++.|+||++.+++........      ........+.+++|+|+.++.+
T Consensus       151 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l  230 (254)
T PRK07478        151 FPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHALKRMAQPEEIAQAALFL  230 (254)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            1124678899998876553       35899999999999998543211000      0001122356899999999766


Q ss_pred             hcCCC--CCCcEEEee
Q 022216          268 LLHPE--SSYKVVEII  281 (301)
Q Consensus       268 l~~~~--~~~~~~~v~  281 (301)
                      +..+.  ..|+++.+.
T Consensus       231 ~s~~~~~~~G~~~~~d  246 (254)
T PRK07478        231 ASDAASFVTGTALLVD  246 (254)
T ss_pred             cCchhcCCCCCeEEeC
Confidence            64332  235555554

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.91  E-value=2.1e-23  Score=179.72  Aligned_cols=204  Identities=21%  Similarity=0.165  Sum_probs=145.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHH-------HhcCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSE-------AIGDD  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~-------~~~~~  135 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+.+..+.+..   ....++.++.+|++| .+++.+       .+++ 
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~-   78 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK-EDEIADMIAAAAAEFGG-   78 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhcCC-
Confidence            4689999999999999999999999999999998765544322   123578899999999 764443       3445 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++++.++++|+.|+..+++++    ++.+.+++|++||...+....            .
T Consensus        79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~------------~  146 (255)
T TIGR01963        79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASP------------F  146 (255)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCC------------C
Confidence            9999999986432        123445678999988888877    556678999999986543221            1


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------ec---------cccccccCCCCHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------ME---------TEDTLYEGTISRDQV  260 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~~---------~~~~~~~~~v~~~Dv  260 (301)
                      ...|..+|.+.+.+.+       ..+++++++|||.++++.......       ..         ........+++++|+
T Consensus       147 ~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  226 (255)
T TIGR01963       147 KSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQPTKRFVTVDEV  226 (255)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCccccCcCHHHH
Confidence            3556777777765543       258999999999999875321110       00         001122358999999


Q ss_pred             HHHHHHHhcCCC--CCCcEEEeecC
Q 022216          261 AEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       261 a~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      |++++.++.++.  ..++.|++.++
T Consensus       227 a~~~~~~~~~~~~~~~g~~~~~~~g  251 (255)
T TIGR01963       227 AETALFLASDAAAGITGQAIVLDGG  251 (255)
T ss_pred             HHHHHHHcCccccCccceEEEEcCc
Confidence            999988887642  35778888874

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.1e-23  Score=181.88  Aligned_cols=207  Identities=16%  Similarity=0.155  Sum_probs=148.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ++++++++|||||+|+||++++++|+++|++|++++|+++.. +..   .....++.++.+|+++ .+++.+.+.+    
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   80 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTD-DAQCRDAVEQTVAK   80 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999999987654 211   1134578999999999 7766665542    


Q ss_pred             --CCCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 --DSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                        ++|+||||||....       ++++..+++|+.+..++++++.+   .+.++||++||...+...            .
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------~  148 (258)
T PRK08628         81 FGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQ------------G  148 (258)
T ss_pred             cCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCC------------C
Confidence              39999999996432       23455688999999999888743   234789999998643211            2


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-eccc---------cccc-cCCCCHHHHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-METE---------DTLY-EGTISRDQVAEVA  264 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-~~~~---------~~~~-~~~v~~~Dva~~~  264 (301)
                      .+..|+.+|.+.+.+.+       .++++++.|+||.++++....... ....         .... ..+++++|+|+++
T Consensus       149 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~  228 (258)
T PRK08628        149 GTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIPLGHRMTTAEEIADTA  228 (258)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCCccccCCCHHHHHHHH
Confidence            24678999999987664       358999999999999986332110 0000         0011 2467899999999


Q ss_pred             HHHhcCC--CCCCcEEEeec
Q 022216          265 VEALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       265 ~~~l~~~--~~~~~~~~v~~  282 (301)
                      +.++...  ...++.+.+.+
T Consensus       229 ~~l~~~~~~~~~g~~~~~~g  248 (258)
T PRK08628        229 VFLLSERSSHTTGQWLFVDG  248 (258)
T ss_pred             HHHhChhhccccCceEEecC
Confidence            8877654  24566666644

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.91  E-value=4.1e-23  Score=177.36  Aligned_cols=208  Identities=18%  Similarity=0.149  Sum_probs=150.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +.+|+||||||+|+||.++++.|+++|++|++++|+.++.....   .....++.++.+|++| .+++.+.+.+      
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRD-RAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999999876544322   1133468899999999 7777766642      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||+|....        +++...+++|+.++.++++++.    +.+.++||++||...+..  +         ..
T Consensus        83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~--~---------~~  151 (251)
T PRK12826         83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV--G---------YP  151 (251)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc--C---------CC
Confidence            39999999986542        2345567899999999998873    445679999999875411  1         12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHHHHHHHHHHhcC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ....|+.+|.+++.+++       ..++++++++||+++|+........     .........+++++|+|++++.++..
T Consensus       152 ~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~  231 (251)
T PRK12826        152 GLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIPLGRLGEPEDIAAAVLFLASD  231 (251)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            24568899988876553       3589999999999999864322110     00111223578999999999876654


Q ss_pred             CC--CCCcEEEeecC
Q 022216          271 PE--SSYKVVEIISR  283 (301)
Q Consensus       271 ~~--~~~~~~~v~~~  283 (301)
                      +.  ..++.+++.++
T Consensus       232 ~~~~~~g~~~~~~~g  246 (251)
T PRK12826        232 EARYITGQTLPVDGG  246 (251)
T ss_pred             cccCcCCcEEEECCC
Confidence            43  35788888763

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.1e-23  Score=180.44  Aligned_cols=202  Identities=18%  Similarity=0.176  Sum_probs=142.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-------hcC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGD  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~  134 (301)
                      ..+++|++|||||+|+||++++++|+++|++|++++|+....      ...++.++++|++| .+++.+.       ++.
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~------~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   77 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD------LPEGVEFVAADLTT-AEGCAAVARAVLERLGG   77 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh------cCCceeEEecCCCC-HHHHHHHHHHHHHHcCC
Confidence            356789999999999999999999999999999999986542      23468899999999 6655443       345


Q ss_pred             CCCEEEEccCCCC----------CCCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQP----------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~----------~~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       +|+||||||...          .++++..+++|+.+++++++++    ++.+.++||++||...+...           
T Consensus        78 -id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----------  145 (260)
T PRK06523         78 -VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPL-----------  145 (260)
T ss_pred             -CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCC-----------
Confidence             999999999532          1245667899999998887766    44455789999998643211           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------ecc-----------ccccccCCC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------MET-----------EDTLYEGTI  255 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~~~-----------~~~~~~~~v  255 (301)
                      ......|+.+|.+.+.+.+       ..|+++++|+||.+.+++......       ...           .......+.
T Consensus       146 ~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  225 (260)
T PRK06523        146 PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIPLGRPA  225 (260)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCccCCCC
Confidence            0124678899998886653       358999999999999986422100       000           001122356


Q ss_pred             CHHHHHHHHHHHhcCC--CCCCcEEEeec
Q 022216          256 SRDQVAEVAVEALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~--~~~~~~~~v~~  282 (301)
                      .++|+|++++.++..+  ...++++.+.+
T Consensus       226 ~~~~va~~~~~l~s~~~~~~~G~~~~vdg  254 (260)
T PRK06523        226 EPEEVAELIAFLASDRAASITGTEYVIDG  254 (260)
T ss_pred             CHHHHHHHHHHHhCcccccccCceEEecC
Confidence            8999999997666432  23455666655

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.2e-22  Score=174.76  Aligned_cols=206  Identities=15%  Similarity=0.133  Sum_probs=147.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++|+++||||+|+||++++++|+++|++|+++.|+.+...+....  .+.++.++++|++| .+++.+++..      +
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~   81 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS-AEAVEALVDFVAARWGR   81 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999999987655443321  23568899999999 7776665541      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        +++...+++|+.++.++++++    ++.+.++||++||...+...            ..
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~------------~~  149 (252)
T PRK06138         82 LDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG------------RG  149 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC------------CC
Confidence            9999999996432        123456789999998877765    45566899999998643211            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec----------cccccccCCCCHHHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME----------TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~----------~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      ...|+.+|.+.+.+.+       ..|+++++++||++.++.........          ........+++++|+|++++.
T Consensus       150 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~  229 (252)
T PRK06138        150 RAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARHPMNRFGTAEEVAQAALF  229 (252)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            3568889988886653       24899999999999998643321110          001122247899999999988


Q ss_pred             HhcCCC--CCCcEEEeec
Q 022216          267 ALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~  282 (301)
                      ++..+.  ..+..+.+.+
T Consensus       230 l~~~~~~~~~g~~~~~~~  247 (252)
T PRK06138        230 LASDESSFATGTTLVVDG  247 (252)
T ss_pred             HcCchhcCccCCEEEECC
Confidence            876654  2345555543

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=7.2e-23  Score=175.96  Aligned_cols=207  Identities=16%  Similarity=0.139  Sum_probs=146.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      |+++++|||||+|+||+++++.|+++|++|+++ .|+..+.++...   ....++.++.+|++| .+++.+++.+     
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGD-VEKIKEMFAQIDEEF   80 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            357899999999999999999999999998764 666654433221   134578899999999 6666665542     


Q ss_pred             -CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|+||||||.....        ++...+++|+.++.++++++.+    .+.++||++||...+..            .
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~  148 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRY------------L  148 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccC------------C
Confidence             399999999864321        2233578999999999988854    44579999999754321            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---e--c-cccccccCCCCHHHHHHHHHHHh
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---M--E-TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~--~-~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      .++..|+.+|.+.+.+++       ..|++++.|+||++.++.......   .  . ........+++++|+|++++.++
T Consensus       149 ~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~  228 (250)
T PRK08063        149 ENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTPAGRMVEPEDVANAVLFLC  228 (250)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCCCCCCCcCHHHHHHHHHHHc
Confidence            224678999999998764       368999999999998875322100   0  0 00111234789999999998877


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      .++.  ..++.+++.++
T Consensus       229 ~~~~~~~~g~~~~~~gg  245 (250)
T PRK08063        229 SPEADMIRGQTIIVDGG  245 (250)
T ss_pred             CchhcCccCCEEEECCC
Confidence            6543  34677776653

>PRK06398 aldose dehydrogenase; Validated

Probab=99.91  E-value=3.7e-23  Score=178.87  Aligned_cols=199  Identities=17%  Similarity=0.106  Sum_probs=141.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+....        .++.++.+|++| .+++.+++..      ++
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~--------~~~~~~~~D~~~-~~~i~~~~~~~~~~~~~i   73 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY--------NDVDYFKVDVSN-KEQVIKGIDYVISKYGRI   73 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc--------CceEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            35689999999999999999999999999999999875431        368889999999 6666555431      39


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++|+..+++|+.|++++++++.    +.+.++||++||...+..            ....
T Consensus        74 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~  141 (258)
T PRK06398         74 DILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAV------------TRNA  141 (258)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccC------------CCCC
Confidence            999999996431        2455678999999999988874    345579999999865421            1234


Q ss_pred             hHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCceee----c-----------cccccccCCCCHHHHHHH
Q 022216          205 GLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGNIIM----E-----------TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~~----~-----------~~~~~~~~~v~~~Dva~~  263 (301)
                      ..|+.+|.+.+.+.+.      .+++++.|+||++.+++.......    .           ........+..++|+|++
T Consensus       142 ~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~  221 (258)
T PRK06398        142 AAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMHPMKRVGKPEEVAYV  221 (258)
T ss_pred             chhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcCCcCCCcCHHHHHHH
Confidence            6788999998876642      249999999999998753221000    0           001112235689999999


Q ss_pred             HHHHhcCCC--CCCcEEEeec
Q 022216          264 AVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       264 ~~~~l~~~~--~~~~~~~v~~  282 (301)
                      ++.++....  ..++++.+.+
T Consensus       222 ~~~l~s~~~~~~~G~~i~~dg  242 (258)
T PRK06398        222 VAFLASDLASFITGECVTVDG  242 (258)
T ss_pred             HHHHcCcccCCCCCcEEEECC
Confidence            966554322  3455555544

>PRK08589 short chain dehydrogenase; Validated

Probab=99.91  E-value=5.1e-23  Score=179.36  Aligned_cols=204  Identities=16%  Similarity=0.098  Sum_probs=142.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+ ++.++...   +...++.++.+|++| .+++.+++..      
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISD-EQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999998 55443321   123468899999999 6555554432      


Q ss_pred             CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      ++|+||||||....         ++++.++++|+.+.+.+++++.    +.+ ++||++||...+...            
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------------  148 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAAD------------  148 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCC------------
Confidence            39999999996431         1245567899999988888863    334 799999998644221            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------------ccccccCCCCHHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------------EDTLYEGTISRDQVAE  262 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------------~~~~~~~~v~~~Dva~  262 (301)
                      .....|..+|.+.+.+.+       ..|++++.|.||.+.+++.........            .......+.+++|+|+
T Consensus       149 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~  228 (272)
T PRK08589        149 LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMTPLGRLGKPEEVAK  228 (272)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccCCCCCCcCHHHHHH
Confidence            113568889988886654       358999999999999986432110000            0011223568999999


Q ss_pred             HHHHHhcCC--CCCCcEEEeec
Q 022216          263 VAVEALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       263 ~~~~~l~~~--~~~~~~~~v~~  282 (301)
                      +++.++..+  ...++++.+.+
T Consensus       229 ~~~~l~s~~~~~~~G~~i~vdg  250 (272)
T PRK08589        229 LVVFLASDDSSFITGETIRIDG  250 (272)
T ss_pred             HHHHHcCchhcCcCCCEEEECC
Confidence            997666432  23455555544

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=2.6e-23  Score=179.22  Aligned_cols=192  Identities=18%  Similarity=0.215  Sum_probs=135.9

Q ss_pred             cccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHh-------
Q 022216           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAI-------  132 (301)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~-------  132 (301)
                      .+++|+++||||+  ++||++++++|+++|++|++.+|+. +..+...+ ....+.++++|++| .+++.+.+       
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   81 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLVDEEDLLVECDVAS-DESIERAFATIKERV   81 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhccCceeEEeCCCCC-HHHHHHHHHHHHHHh
Confidence            3568999999999  7999999999999999999998873 32222111 22467889999999 65555443       


Q ss_pred             cCCCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcch
Q 022216          133 GDDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                      +. +|++|||||....            ++|+..+++|+.+.+.+++++.+.  ..++||++||.+...   +       
T Consensus        82 g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~---~-------  150 (252)
T PRK06079         82 GK-IDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER---A-------  150 (252)
T ss_pred             CC-CCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc---c-------
Confidence            44 9999999996421            245667899999999999888543  236899999975221   1       


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----ec--cccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----ME--TEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~~--~~~~~~~~~v~~~Dva~~~~  265 (301)
                        ...+..|+.+|.+.+.+.+       .+||+++.|.||.+.+++......    ..  ........+..++|+|++++
T Consensus       151 --~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~  228 (252)
T PRK06079        151 --IPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVDGVGVTIEEVGNTAA  228 (252)
T ss_pred             --CCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCcccCCCCHHHHHHHHH
Confidence              1224678899999886653       368999999999999986422100    00  00111234678999999996


Q ss_pred             HHhc
Q 022216          266 EALL  269 (301)
Q Consensus       266 ~~l~  269 (301)
                      .++.
T Consensus       229 ~l~s  232 (252)
T PRK06079        229 FLLS  232 (252)
T ss_pred             HHhC
Confidence            6654

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.90  E-value=1.9e-23  Score=180.14  Aligned_cols=195  Identities=16%  Similarity=0.156  Sum_probs=140.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.++..+...   ....++.++.+|++| .+++.+.+..    
T Consensus         5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   83 (254)
T PRK08085          5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH-KQEVEAAIEHIEKD   83 (254)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999998766554322   123467888999999 6666655432    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|+||||||....        ++|+.++++|+.++.++++++.+    .+.++||++||.....   +         
T Consensus        84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---~---------  151 (254)
T PRK08085         84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL---G---------  151 (254)
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc---C---------
Confidence              39999999996431        34666889999999999888743    3457999999975321   1         


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ......|..+|.+.+.+.+       .+|++++.|+||++.++.........      ........+..++|+|++++.+
T Consensus       152 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l  231 (254)
T PRK08085        152 RDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFL  231 (254)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            1224568889998886654       35899999999999998643321100      0011123467899999988655


Q ss_pred             hc
Q 022216          268 LL  269 (301)
Q Consensus       268 l~  269 (301)
                      +.
T Consensus       232 ~~  233 (254)
T PRK08085        232 SS  233 (254)
T ss_pred             hC
Confidence            54

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.90  E-value=6.4e-23  Score=176.85  Aligned_cols=208  Identities=16%  Similarity=0.080  Sum_probs=146.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++++|++|||||+|+||+++++.|+++|++|+++.|+..............+.++.+|+++ .+++.+.+.+      +
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   89 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD-SQSVEAAVAAVISAFGR   89 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence            35678999999999999999999999999999999998654322111123457789999999 7666655432      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        +++..++++|+.+++++++++..    .+.++||++||.......            ..
T Consensus        90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~  157 (255)
T PRK06841         90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL------------ER  157 (255)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCC------------CC
Confidence            8999999996432        23445789999999999999853    356799999998532111            11


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ...|+.+|.+.+.+.+       ..|++++.|+||.+.+++.......     .........+.+++|+|++++.++..+
T Consensus       158 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~  237 (255)
T PRK06841        158 HVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERAKKLIPAGRFAYPEEIAAAALFLASDA  237 (255)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcc
Confidence            3567888888776553       3589999999999998864321100     001112235789999999998777543


Q ss_pred             C--CCCcEEEeec
Q 022216          272 E--SSYKVVEIIS  282 (301)
Q Consensus       272 ~--~~~~~~~v~~  282 (301)
                      .  ..|+++.+.+
T Consensus       238 ~~~~~G~~i~~dg  250 (255)
T PRK06841        238 AAMITGENLVIDG  250 (255)
T ss_pred             ccCccCCEEEECC
Confidence            2  3455665554

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.90  E-value=7e-23  Score=182.82  Aligned_cols=196  Identities=15%  Similarity=0.131  Sum_probs=144.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh-------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI-------  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-------  132 (301)
                      ++++|+||||||+|+||++++++|+++|++|++++|+.+.+++...   .....+.++.+|++| .+++.+++       
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~~~   82 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAASFG   82 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHhc
Confidence            3568999999999999999999999999999999999877655432   134567889999999 77666655       


Q ss_pred             cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          133 GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      +. +|++|||||....        ++++..+++|+.++.++++++    ++.+.++||++||...+...           
T Consensus        83 g~-iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~-----------  150 (330)
T PRK06139         83 GR-IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQ-----------  150 (330)
T ss_pred             CC-CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCC-----------
Confidence            44 9999999996432        234557899999999988886    34455799999998644221           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------H-cCCcEEEEecCcccCCCCCCceeecc-ccccccCCCCHHHHHHHHHHHhcCC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEPPTGNIIMET-EDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~-~~i~~~~irpg~v~~~~~~~~~~~~~-~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                       .....|..+|.+.+.+.+       + .+++++.|.||.+.|++......... ........++++|+|++++.++.++
T Consensus       151 -p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~pe~vA~~il~~~~~~  229 (330)
T PRK06139        151 -PYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANYTGRRLTPPPPVYDPRRVAKAVVRLADRP  229 (330)
T ss_pred             -CCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccccccccccCCCCCCCHHHHHHHHHHHHhCC
Confidence             123568888887654432       2 38999999999999986533211111 1111234679999999999999876


Q ss_pred             C
Q 022216          272 E  272 (301)
Q Consensus       272 ~  272 (301)
                      .
T Consensus       230 ~  230 (330)
T PRK06139        230 R  230 (330)
T ss_pred             C
Confidence            4

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.90  E-value=5.1e-23  Score=176.80  Aligned_cols=205  Identities=14%  Similarity=0.118  Sum_probs=146.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++++|||||+|+||++++++|+++|++|++++|+.+...+...   ....++.++.+|++| .+++.+.+..      +
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD-RDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence            57999999999999999999999999999999998766544321   134578999999999 7776665541      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++++..+++|+.++.++++++.    +.+.++||++||...+....            .
T Consensus        81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~------------~  148 (250)
T TIGR03206        81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS------------G  148 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC------------C
Confidence            9999999986432        1234568899999999888874    45668999999987654321            1


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec--c--------ccccccCCCCHHHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME--T--------EDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~--~--------~~~~~~~~v~~~Dva~~~~~  266 (301)
                      ...|+.+|.+.+.+.+       ..++++++++||.+++++........  .        .......+..++|+|+++..
T Consensus       149 ~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  228 (250)
T TIGR03206       149 EAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPLGRLGQPDDLPGAILF  228 (250)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence            3568888887765543       25899999999999988533211000  0        01111235689999999977


Q ss_pred             HhcCCC--CCCcEEEeec
Q 022216          267 ALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~  282 (301)
                      ++..+.  ..++++.+.+
T Consensus       229 l~~~~~~~~~g~~~~~~~  246 (250)
T TIGR03206       229 FSSDDASFITGQVLSVSG  246 (250)
T ss_pred             HcCcccCCCcCcEEEeCC
Confidence            665432  2467777754

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=9.1e-23  Score=176.04  Aligned_cols=206  Identities=17%  Similarity=0.151  Sum_probs=143.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      .+++|+++||||+|+||++++++|+++|++|+++.|+.+...+...  ..++.++.+|++| .+++.+++..      ++
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~--~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i   80 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR--EKGVFTIKCDVGN-RDQVKKSKEVVEKEFGRV   80 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH--hCCCeEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence            4568999999999999999999999999999988766543322221  1257889999999 7666665542      39


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++++.++++|+.+++.+++++    ++.+.++||++||...++...           ...
T Consensus        81 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~-----------~~~  149 (255)
T PRK06463         81 DVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAA-----------EGT  149 (255)
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCC-----------CCc
Confidence            999999997431        235567899999987776665    444557999999987653210           123


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec---------cccccccCCCCHHHHHHHHHHHh
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME---------TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~---------~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ..|..+|.+.+.+.+       ..|++++.|+||++.+++........         ........+.+++|+|++++.++
T Consensus       150 ~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~  229 (255)
T PRK06463        150 TFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTVLKTTGKPEDIANIVLFLA  229 (255)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCCcCCCcCHHHHHHHHHHHc
Confidence            568899998886653       35899999999999988643211000         01112223568999999997766


Q ss_pred             cCCC--CCCcEEEeec
Q 022216          269 LHPE--SSYKVVEIIS  282 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~  282 (301)
                      ..+.  ..+..+.+.+
T Consensus       230 s~~~~~~~G~~~~~dg  245 (255)
T PRK06463        230 SDDARYITGQVIVADG  245 (255)
T ss_pred             ChhhcCCCCCEEEECC
Confidence            5432  3456666654

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.1e-22  Score=173.87  Aligned_cols=193  Identities=16%  Similarity=0.200  Sum_probs=142.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      ++|++|||||+|+||++++++|+++|++|++++|++++.+++..   ....++.++.+|++| .+++.+.+..      +
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSN-PEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            36899999999999999999999999999999998766544322   123578899999999 6666555431      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++++.++++|+.+++++++++    ++.+.++||++||...++..            ..
T Consensus        84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~  151 (241)
T PRK07454         84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF------------PQ  151 (241)
T ss_pred             CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC------------CC
Confidence            9999999996432        235566889999999988776    34455799999998765422            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +..|..+|.+.+.+.+       ..|+++++|+||++.++..........  .....+++++|+|++++.++..+.
T Consensus       152 ~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~~~~--~~~~~~~~~~~va~~~~~l~~~~~  225 (241)
T PRK07454        152 WGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETVQAD--FDRSAMLSPEQVAQTILHLAQLPP  225 (241)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccccccc--cccccCCCHHHHHHHHHHHHcCCc
Confidence            3568889998886553       358999999999999986432211110  111246899999999988887664

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.90  E-value=7.3e-23  Score=174.44  Aligned_cols=204  Identities=19%  Similarity=0.175  Sum_probs=147.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|++.+..+.... ...++.++.+|++| .+++.+.+.+      +
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVD-PQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence            35689999999999999999999999999999999987654432211 22467788999999 6666555432      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+|||++|....        +++...+++|+.++.++++++.    +.+.++||++||...+...            ..
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~  150 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG------------PG  150 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC------------CC
Confidence            9999999986432        1234557899999999988874    4467899999999766432            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC--CC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE--SS  274 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~  274 (301)
                      ...|+.+|.+.+.+++       +.+++++.++||+++++.......    ......+++++|+|+++..++..+.  ..
T Consensus       151 ~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~~----~~~~~~~~~~~dva~~~~~~l~~~~~~~~  226 (239)
T PRK12828        151 MGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADMP----DADFSRWVTPEQIAAVIAFLLSDEAQAIT  226 (239)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcCC----chhhhcCCCHHHHHHHHHHHhCccccccc
Confidence            3567788887765553       358999999999999985332211    1122347899999999987776542  34


Q ss_pred             CcEEEeecC
Q 022216          275 YKVVEIISR  283 (301)
Q Consensus       275 ~~~~~v~~~  283 (301)
                      ++.+.+.++
T Consensus       227 g~~~~~~g~  235 (239)
T PRK12828        227 GASIPVDGG  235 (239)
T ss_pred             ceEEEecCC
Confidence            667777663

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.90  E-value=5.4e-23  Score=177.75  Aligned_cols=206  Identities=15%  Similarity=0.140  Sum_probs=144.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh---ccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ..+++|+||||||+|+||++++++|+++|++|+++.|+ .+.++   .......++.++.+|++| .+++.+.+.+    
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~   88 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEE   88 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999987 33322   222234578899999999 7666665542    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|++|||||....        ++++..+++|+.+..++++++.    +.+.++||++||...+...           
T Consensus        89 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  157 (258)
T PRK06935         89 FGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGG-----------  157 (258)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCC-----------
Confidence              39999999996431        2455678899999988887764    4456799999998754321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~~~~  267 (301)
                       ..+..|+.+|.+.+.+.+       ..|++++.|+||.+.++..........      .......+..++|+|+.+..+
T Consensus       158 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l  236 (258)
T PRK06935        158 -KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIPAGRWGEPDDLMGAAVFL  236 (258)
T ss_pred             -CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence             123578889998886653       358999999999999875322110000      011123477899999999655


Q ss_pred             hcCCC---CCCcEEEeec
Q 022216          268 LLHPE---SSYKVVEIIS  282 (301)
Q Consensus       268 l~~~~---~~~~~~~v~~  282 (301)
                      + ++.   ..+.++.+.+
T Consensus       237 ~-s~~~~~~~G~~i~~dg  253 (258)
T PRK06935        237 A-SRASDYVNGHILAVDG  253 (258)
T ss_pred             c-ChhhcCCCCCEEEECC
Confidence            5 443   3455555444

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.90  E-value=4.3e-23  Score=178.32  Aligned_cols=188  Identities=20%  Similarity=0.253  Sum_probs=139.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC--CCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +|+|+||||+|+||+++++.|+++|++|++++|+.+.+++.....  ..++.++.+|++| .+++.+.+..      ++|
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~g~id   80 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRD-ADALAAAAADFIAAHGLPD   80 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC-HHHHHHHHHHHHHhCCCCC
Confidence            479999999999999999999999999999999877665433211  1278899999999 7777665432      389


Q ss_pred             EEEEccCCCCC---------CCCCCceeeehHHHHHHHHH----HHHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          138 AVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEA----CRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       138 ~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a----~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +||||||....         ++++.++++|+.|+.+++++    +++.+.++||++||...+...            ...
T Consensus        81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~------------~~~  148 (257)
T PRK07024         81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGL------------PGA  148 (257)
T ss_pred             EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC------------CCC
Confidence            99999996432         12445689999999998774    455666899999997643211            123


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ..|+.+|.+.+.+.+       ..|+++++|+||++.+++.....      ......++++|+|+.++.++.++.
T Consensus       149 ~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~------~~~~~~~~~~~~a~~~~~~l~~~~  217 (257)
T PRK07024        149 GAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNP------YPMPFLMDADRFAARAARAIARGR  217 (257)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcCC------CCCCCccCHHHHHHHHHHHHhCCC
Confidence            568899999886652       46899999999999998643210      011124789999999999997653

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.90  E-value=1.3e-22  Score=169.19  Aligned_cols=219  Identities=22%  Similarity=0.229  Sum_probs=180.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      .+.+|-++-|.|||||+|+.++.+|++.|-.|++-.|..+.....+.  .....+-+..-|+.| +++++++.+. -++|
T Consensus        57 sS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~D-edSIr~vvk~-sNVV  134 (391)
T KOG2865|consen   57 SSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRD-EDSIRAVVKH-SNVV  134 (391)
T ss_pred             ccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCC-HHHHHHHHHh-CcEE
Confidence            45678899999999999999999999999999998887654332221  234678899999999 8999999999 9999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (301)
                      ||..|...+.....+.++|+.+...|.+.|++.|+.|+|.+|+..+   +           .+.-+-|..+|.++|..++
T Consensus       135 INLIGrd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lga---n-----------v~s~Sr~LrsK~~gE~aVr  200 (391)
T KOG2865|consen  135 INLIGRDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGA---N-----------VKSPSRMLRSKAAGEEAVR  200 (391)
T ss_pred             EEeeccccccCCcccccccchHHHHHHHHHHhhChhheeehhhccc---c-----------ccChHHHHHhhhhhHHHHH
Confidence            9999976665556678999999999999999999999999999742   1           1223667899999999888


Q ss_pred             HcCCcEEEEecCcccCCCCC-------------CceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCC
Q 022216          220 KSGINYTIIRPGGLRNEPPT-------------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDA  286 (301)
Q Consensus       220 ~~~i~~~~irpg~v~~~~~~-------------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~  286 (301)
                      +.=-..+||||..++|....             ....+..++.....++++-|||.+|+.++.+|.+.|++|+..++   
T Consensus       201 dafPeAtIirPa~iyG~eDrfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s~Gktye~vGP---  277 (391)
T KOG2865|consen  201 DAFPEATIIRPADIYGTEDRFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDSMGKTYEFVGP---  277 (391)
T ss_pred             hhCCcceeechhhhcccchhHHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccccCceeeecCC---
Confidence            76668999999999996321             11233444455556899999999999999999999999999995   


Q ss_pred             CCcCHHHHHHHhh
Q 022216          287 PKRSYEDLFGSIK  299 (301)
Q Consensus       287 ~~~s~~e~~~~i~  299 (301)
                      ..+.+.|+++.|-
T Consensus       278 ~~yql~eLvd~my  290 (391)
T KOG2865|consen  278 DRYQLSELVDIMY  290 (391)
T ss_pred             chhhHHHHHHHHH
Confidence            9999999999874

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.90  E-value=4.5e-23  Score=176.65  Aligned_cols=206  Identities=15%  Similarity=0.103  Sum_probs=150.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~V  139 (301)
                      +++++++++||||+|+||+++++.|+++|++|++++|+.++.+++..  ..+..++.+|++| .+.+.+.+..  ++|+|
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~~D~~~-~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG--ETGCEPLRLDVGD-DAAIRAALAAAGAFDGL   81 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--HhCCeEEEecCCC-HHHHHHHHHHhCCCCEE
Confidence            34678999999999999999999999999999999998776655432  1246788999999 7777776653  49999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----C-CCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----G-VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      |||||....        ++++..+++|+.++.++++++.+.    + .++||++||...+...            .....
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~  149 (245)
T PRK07060         82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL------------PDHLA  149 (245)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC------------CCCcH
Confidence            999996432        234556789999999999988542    2 3699999998754321            12356


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhcCCC-
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPE-  272 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~-  272 (301)
                      |..+|.++|.+.+       ..+++++.++||.+.++.....+...      ........+++++|+|++++.++..+. 
T Consensus       150 y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~  229 (245)
T PRK07060        150 YCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAAIPLGRFAEVDDVAAPILFLLSDAAS  229 (245)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccC
Confidence            8899999887653       25899999999999998643211100      001122357899999999987776543 


Q ss_pred             -CCCcEEEeec
Q 022216          273 -SSYKVVEIIS  282 (301)
Q Consensus       273 -~~~~~~~v~~  282 (301)
                       ..++.+++.+
T Consensus       230 ~~~G~~~~~~~  240 (245)
T PRK07060        230 MVSGVSLPVDG  240 (245)
T ss_pred             CccCcEEeECC
Confidence             3466666654

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.90  E-value=6e-23  Score=176.82  Aligned_cols=204  Identities=18%  Similarity=0.191  Sum_probs=139.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEE-eCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHh--------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAI--------  132 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~-r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~--------  132 (301)
                      ++|+++||||+|+||++++++|+++|++|++.. |+.+..++..   ......+..+.+|+++ .+++...+        
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES-LHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCC-HHHHHHHHHHHHHHhh
Confidence            579999999999999999999999999998875 4444433221   1123457788999998 54443222        


Q ss_pred             ---c-CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcch
Q 022216          133 ---G-DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 ---~-~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         + +++|+||||||....        ++|+.++++|+.+++.+++++.+.  ..++||++||...+...         
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------  152 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL---------  152 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC---------
Confidence               2 139999999996432        135667789999999999988543  23699999998754221         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~  265 (301)
                         .....|+.+|.+.+.+.+       ..|++++.|.||++.+++........      ........+.+++|+|+++.
T Consensus       153 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  229 (252)
T PRK12747        153 ---PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAA  229 (252)
T ss_pred             ---CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHHHHhcCcccCCCCHHHHHHHHH
Confidence               123678999999886653       35899999999999998643211100      00011234678999999996


Q ss_pred             HHhcCCC---CCCcEEEeec
Q 022216          266 EALLHPE---SSYKVVEIIS  282 (301)
Q Consensus       266 ~~l~~~~---~~~~~~~v~~  282 (301)
                      .++ ++.   ..++++.+.+
T Consensus       230 ~l~-s~~~~~~~G~~i~vdg  248 (252)
T PRK12747        230 FLA-SPDSRWVTGQLIDVSG  248 (252)
T ss_pred             HHc-CccccCcCCcEEEecC
Confidence            554 443   2345555543

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.90  E-value=5.1e-23  Score=176.88  Aligned_cols=192  Identities=19%  Similarity=0.194  Sum_probs=138.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CCCCEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDSEAV  139 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~~d~V  139 (301)
                      |+++||||+|+||.++++.|+++|++|++++|++++.+.+......++.++.+|++| .+++.+.+.       + +|+|
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~-id~v   78 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWRN-IDVL   78 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCC-HHHHHHHHHHHHHHcCC-CCEE
Confidence            589999999999999999999999999999999877665443234578899999999 766665543       5 9999


Q ss_pred             EEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          140 VCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       140 i~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      |||||....         ++++.++++|+.++.++++++    ++.+.++||++||...+..            ......
T Consensus        79 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~~~~~  146 (248)
T PRK10538         79 VNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP------------YAGGNV  146 (248)
T ss_pred             EECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCC------------CCCCch
Confidence            999986321         234566899999977777766    4456679999999763311            122457


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc---cc--cccCCCCHHHHHHHHHHHhcCCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE---DT--LYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~---~~--~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      |+.+|.+.+.+.+       ..++++++|+||.+.|+...........   ..  ....++.++|+|++++.++..+.
T Consensus       147 Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~  224 (248)
T PRK10538        147 YGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVATLPA  224 (248)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHHHhhccccCCCCHHHHHHHHHHHhcCCC
Confidence            8899999887653       2589999999999986543221010000   00  01235799999999988876554

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=8.2e-23  Score=175.76  Aligned_cols=207  Identities=16%  Similarity=0.103  Sum_probs=148.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++++|||||+|+||++++++|+++|++|++..|+. .......   .....++.++.+|+++ .+++.+.+++     
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST-REGCETLAKATIDRY   82 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC-HHHHHHHHHHHHHHc
Confidence            4679999999999999999999999999998877643 2222111   1123467788999999 6666555432     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                       ++|+||||||....        ++++..+++|+.+..++++++.+.  ..++||++||...|..            ..+
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~  150 (252)
T PRK06077         83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRP------------AYG  150 (252)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCC------------CCC
Confidence             38999999996332        123456799999999999988643  2368999999875532            223


Q ss_pred             hhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCceee--------ccccccccCCCCHHHHHHHHHHHhc
Q 022216          204 FGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGNIIM--------ETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~~--------~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ...|+.+|.+.|.+.+.      .+++++.++||.+.++........        .........+++++|+|++++.++.
T Consensus       151 ~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~  230 (252)
T PRK06077        151 LSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKFTLMGKILDPEEVAEFVAAILK  230 (252)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHhcCcCCCCCCHHHHHHHHHHHhC
Confidence            57789999999876642      379999999999988753221100        0001122357999999999999887


Q ss_pred             CCCCCCcEEEeecC
Q 022216          270 HPESSYKVVEIISR  283 (301)
Q Consensus       270 ~~~~~~~~~~v~~~  283 (301)
                      .+...+++|++.++
T Consensus       231 ~~~~~g~~~~i~~g  244 (252)
T PRK06077        231 IESITGQVFVLDSG  244 (252)
T ss_pred             ccccCCCeEEecCC
Confidence            66667889998875

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.90  E-value=1.3e-22  Score=177.32  Aligned_cols=206  Identities=19%  Similarity=0.165  Sum_probs=144.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|+++||||+|+||++++++|+++|++|++++|+.+..++....   ...++.++++|++| .+++.+.+..     
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   85 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD-KESLEQARQQILEDF   85 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999987655443221   23468899999999 6666554431     


Q ss_pred             -CCCEEEEccCCCCC-----------------------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccc
Q 022216          135 -DSEAVVCATGFQPG-----------------------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVN  186 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~-----------------------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~  186 (301)
                       ++|+||||||....                       ++++..+++|+.+++.+++++    ++.+.++||++||...+
T Consensus        86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~  165 (278)
T PRK08277         86 GPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAF  165 (278)
T ss_pred             CCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhc
Confidence             39999999995321                       134556789999998777765    34455799999998765


Q ss_pred             cccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-----------cc
Q 022216          187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-----------ED  248 (301)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-----------~~  248 (301)
                      ...            .....|+.+|.+.+.+.+       ..|++++.|+||.+.+++.........           ..
T Consensus       166 ~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~  233 (278)
T PRK08277        166 TPL------------TKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKILAH  233 (278)
T ss_pred             CCC------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHHhcc
Confidence            321            224568899998887654       258999999999999986432111000           01


Q ss_pred             ccccCCCCHHHHHHHHHHHhcCC-C---CCCcEEEeec
Q 022216          249 TLYEGTISRDQVAEVAVEALLHP-E---SSYKVVEIIS  282 (301)
Q Consensus       249 ~~~~~~v~~~Dva~~~~~~l~~~-~---~~~~~~~v~~  282 (301)
                      .....+..++|+|++++.++ ++ .   ..++++.+.+
T Consensus       234 ~p~~r~~~~~dva~~~~~l~-s~~~~~~~tG~~i~vdg  270 (278)
T PRK08277        234 TPMGRFGKPEELLGTLLWLA-DEKASSFVTGVVLPVDG  270 (278)
T ss_pred             CCccCCCCHHHHHHHHHHHc-CccccCCcCCCEEEECC
Confidence            11234568999999996644 44 3   2345555543

>PRK09135 pteridine reductase; Provisional

Probab=99.90  E-value=1.7e-22  Score=173.28  Aligned_cols=206  Identities=16%  Similarity=0.120  Sum_probs=144.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhcc----ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTL----SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      .+++||||||+|+||++++++|+++|++|++++|+..+ .+...    ......+.++.+|++| .+++.++++.     
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   83 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD-PDALPELVAACVAAF   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999986432 22211    1123468899999999 7777666542     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       ++|+||||||....        ++++.++++|+.|+.++++++.+.   ..+.++++++....            .+.+
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~  151 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE------------RPLK  151 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc------------CCCC
Confidence             38999999996432        234567889999999999999532   23567777664311            1234


Q ss_pred             hhhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCceeecc-----ccccccCCCCHHHHHHHHHHHhcC-
Q 022216          203 VFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGNIIMET-----EDTLYEGTISRDQVAEVAVEALLH-  270 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~~~~-----~~~~~~~~v~~~Dva~~~~~~l~~-  270 (301)
                      +...|+.+|.++|.+++.      .++++++++||+++|+.....+....     .......+.+++|+|+++..++.. 
T Consensus       152 ~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~  231 (249)
T PRK09135        152 GYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEARQAILARTPLKRIGTPEDIAEAVRFLLADA  231 (249)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHcCcc
Confidence            467899999999987742      36999999999999987543211000     011122345799999999655543 


Q ss_pred             CCCCCcEEEeecC
Q 022216          271 PESSYKVVEIISR  283 (301)
Q Consensus       271 ~~~~~~~~~v~~~  283 (301)
                      +...+++|++.++
T Consensus       232 ~~~~g~~~~i~~g  244 (249)
T PRK09135        232 SFITGQILAVDGG  244 (249)
T ss_pred             ccccCcEEEECCC
Confidence            2346888999885

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.4e-22  Score=176.99  Aligned_cols=191  Identities=20%  Similarity=0.292  Sum_probs=140.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CCCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~~d~  138 (301)
                      +|+|+||||+|+||++++++|+++|++|++++|+++.++++..   .+++++.+|++| .+++.+++.       +++|+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~---~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA---EGLEAFQLDYAE-PESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---CCceEEEccCCC-HHHHHHHHHHHHHHcCCCccE
Confidence            5799999999999999999999999999999999877665542   368889999999 666555443       24899


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHH----HHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTV----NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~----~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||||||....        ++++.++++|+.|..    .+++.+++.+.++||++||...+..            ......
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~------------~~~~~~  147 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVP------------MKYRGA  147 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCC------------CCccch
Confidence            9999986432        123457899999954    4555566777789999999764321            122467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------eccc----------------cccccCCCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------METE----------------DTLYEGTIS  256 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~~~~----------------~~~~~~~v~  256 (301)
                      |+.+|.+.+.+.+       ..|+++++|+||.+.+++......       ....                .......++
T Consensus       148 Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (277)
T PRK05993        148 YNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQMARLEGGGSKSRFKLG  227 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHHHHHHhhhhccccCCC
Confidence            8999999987653       479999999999999986432110       0000                000011368


Q ss_pred             HHHHHHHHHHHhcCCC
Q 022216          257 RDQVAEVAVEALLHPE  272 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~  272 (301)
                      ++++|+.++.++.++.
T Consensus       228 ~~~va~~i~~a~~~~~  243 (277)
T PRK05993        228 PEAVYAVLLHALTAPR  243 (277)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999998764

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.90  E-value=9.7e-23  Score=174.48  Aligned_cols=206  Identities=15%  Similarity=0.121  Sum_probs=144.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-------cCCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GDDS  136 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~~~  136 (301)
                      ++++++|||||+|+||++++++|+++|+.|++..|+.+++++.......++.++.+|++| .+++.+.+       .. +
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~-i   81 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSD-RDEVKALGQKAEADLEG-V   81 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCC-C
Confidence            467999999999999999999999999999988888777665443334578899999999 76666554       44 9


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        +++...+++|+.++.++++++.    +.+.++||++||...+...   +.         .
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---~~---------~  149 (245)
T PRK12936         82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN---PG---------Q  149 (245)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC---CC---------C
Confidence            999999996432        2455678999999999988864    2355799999997543211   11         2


Q ss_pred             hHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCCCceeec----cccccccCCCCHHHHHHHHHHHhcCCC-
Q 022216          205 GLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTGNIIME----TEDTLYEGTISRDQVAEVAVEALLHPE-  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~~~~~~~----~~~~~~~~~v~~~Dva~~~~~~l~~~~-  272 (301)
                      ..|+.+|.+.+.+.       ...+++++.|+||++.+++........    ........+.+++|++++++.++..+. 
T Consensus       150 ~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~l~~~~~~  229 (245)
T PRK12936        150 ANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEAIMGAIPMKRMGTGAEVASAVAYLASSEAA  229 (245)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccChHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCcccc
Confidence            34666666554433       236899999999999887543211000    001112235689999999976665432 


Q ss_pred             -CCCcEEEeecC
Q 022216          273 -SSYKVVEIISR  283 (301)
Q Consensus       273 -~~~~~~~v~~~  283 (301)
                       ..++++++.++
T Consensus       230 ~~~G~~~~~~~g  241 (245)
T PRK12936        230 YVTGQTIHVNGG  241 (245)
T ss_pred             CcCCCEEEECCC
Confidence             24677777663

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.90  E-value=5.1e-23  Score=177.70  Aligned_cols=205  Identities=17%  Similarity=0.211  Sum_probs=144.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHh-------c
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAI-------G  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~-------~  133 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|++...++....   ...++.++.+|++| .+++...+       +
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD-EDQCANLVALALERFG   81 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC-HHHHHHHHHHHHHHcC
Confidence            4579999999999999999999999999999999987665443321   24568899999999 66665544       4


Q ss_pred             CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhc
Q 022216          134 DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      + +|+||||||....         +++...+++|+.++..+++++.+.   ..++||++||...+..            .
T Consensus        82 ~-~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~------------~  148 (258)
T PRK07890         82 R-VDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHS------------Q  148 (258)
T ss_pred             C-ccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccC------------C
Confidence            4 9999999986422         234566899999999999998542   2369999999864321            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-------c------c--ccccccCCCCHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-------E------T--EDTLYEGTISRDQ  259 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-------~------~--~~~~~~~~v~~~D  259 (301)
                      ..+..|..+|.+.+.+++       ..++++++|+||+++++.....+..       .      .  .......+.+++|
T Consensus       149 ~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  228 (258)
T PRK07890        149 PKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANSDLKRLPTDDE  228 (258)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhcCCccccCCHHH
Confidence            224678899998886654       2589999999999999854321100       0      0  0011223668999


Q ss_pred             HHHHHHHHhcCC--CCCCcEEEeec
Q 022216          260 VAEVAVEALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       260 va~~~~~~l~~~--~~~~~~~~v~~  282 (301)
                      +|++++.++...  ...++++.+.+
T Consensus       229 va~a~~~l~~~~~~~~~G~~i~~~g  253 (258)
T PRK07890        229 VASAVLFLASDLARAITGQTLDVNC  253 (258)
T ss_pred             HHHHHHHHcCHhhhCccCcEEEeCC
Confidence            999997666532  23444544433

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.2e-22  Score=171.82  Aligned_cols=200  Identities=17%  Similarity=0.216  Sum_probs=144.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi~~A  143 (301)
                      +|++|||||+|+||+++++.|+++ ++|++++|+.++.+++.. ....++++++|++| .+++.+++..  ++|+|||++
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~-~~~~~~~~~~D~~~-~~~~~~~~~~~~~id~vi~~a   79 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAA-ELPGATPFPVDLTD-PEAIAAAVEQLGRLDVLVHNA   79 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHH-HhccceEEecCCCC-HHHHHHHHHhcCCCCEEEECC
Confidence            579999999999999999999999 999999998766554432 12468899999999 7888887763  499999999


Q ss_pred             CCCCCC--------CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHH
Q 022216          144 GFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       144 g~~~~~--------~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (301)
                      |.....        ++..++++|+.+..++.+++    ++. .+++|++||...++...            ....|+.+|
T Consensus        80 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~~------------~~~~y~~~K  146 (227)
T PRK08219         80 GVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRANP------------GWGSYAASK  146 (227)
T ss_pred             CcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcCC------------CCchHHHHH
Confidence            864421        23445788899865555554    444 46999999987653221            235688889


Q ss_pred             HHHHHHHHH-----cC-CcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeec
Q 022216          212 LQAEQYIRK-----SG-INYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       212 ~~~e~~~~~-----~~-i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~  282 (301)
                      .+.+.+++.     .+ ++++.|+||.+.++.................+++++|+|++++.++.++. .+.++++.-
T Consensus       147 ~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~~-~~~~~~~~~  222 (227)
T PRK08219        147 FALRALADALREEEPGNVRVTSVHPGRTDTDMQRGLVAQEGGEYDPERYLRPETVAKAVRFAVDAPP-DAHITEVVV  222 (227)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEecCCccchHhhhhhhhhccccCCCCCCCHHHHHHHHHHHHcCCC-CCccceEEE
Confidence            888765532     34 99999999998876533221111111122357999999999998887764 567788766

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=6.2e-23  Score=178.86  Aligned_cols=205  Identities=14%  Similarity=0.148  Sum_probs=138.2

Q ss_pred             ccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCc---hhhhccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++|++|||||+  ++||++++++|+++|++|++.+|+..   ..++...+.... .++.+|++| .+++.+.+..    
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d-~~~v~~~~~~i~~~   80 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSK-PEHFKSLAESLKKD   80 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCC-HHHHHHHHHHHHHH
Confidence            468999999997  89999999999999999999888742   222222212223 678999999 6655554422    


Q ss_pred             --CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcch
Q 022216          135 --DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        ++|++|||||+...            ++|+.++++|+.+.+.+++++...  ..++||++||.+...   +.      
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~---~~------  151 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK---YV------  151 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc---CC------
Confidence              49999999996421            245668899999999999888532  226899999975221   11      


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----ec--cccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----ME--TEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~~--~~~~~~~~~v~~~Dva~~~~  265 (301)
                         ..+..|..+|.+.+.+.+       .+|++++.|.||++.+++......    ..  ........+..++|+|++++
T Consensus       152 ---~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r~~~pedva~~v~  228 (274)
T PRK08415        152 ---PHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEINAPLKKNVSIEEVGNSGM  228 (274)
T ss_pred             ---CcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhhCchhccCCHHHHHHHHH
Confidence               124568888888876543       368999999999999875321100    00  00111234578999999996


Q ss_pred             HHhcCCC--CCCcEEEeec
Q 022216          266 EALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~  282 (301)
                      .++....  ..++++.+.+
T Consensus       229 fL~s~~~~~itG~~i~vdG  247 (274)
T PRK08415        229 YLLSDLSSGVTGEIHYVDA  247 (274)
T ss_pred             HHhhhhhhcccccEEEEcC
Confidence            6654322  3444554443

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.7e-22  Score=176.55  Aligned_cols=193  Identities=18%  Similarity=0.191  Sum_probs=143.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ..+++|+++||||+|+||+++++.|+++|++|++++|+.+.+++....   ....+.++.+|++| .+++.+.+..    
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~  114 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD-LDAVDALVADVEKR  114 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999998765543321   23467899999999 7766666551    


Q ss_pred             --CCCEEEEccCCCCCC----------CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          135 --DSEAVVCATGFQPGW----------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~~----------~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        ++|+||||||.....          +++..+++|+.|..++++++    ++.+.++||++||.+.+....        
T Consensus       115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------  186 (293)
T PRK05866        115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEAS--------  186 (293)
T ss_pred             cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC--------
Confidence              399999999965321          22346789999998888876    355668999999976443110        


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                         .....|+.+|.+.+.+.+       ..|++++.|+||.+.+++.......     .....++++++|+.++.++.++
T Consensus       187 ---p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~~~-----~~~~~~~pe~vA~~~~~~~~~~  258 (293)
T PRK05866        187 ---PLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTKAY-----DGLPALTADEAAEWMVTAARTR  258 (293)
T ss_pred             ---CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccccccc-----cCCCCCCHHHHHHHHHHHHhcC
Confidence               123678999999876543       3589999999999999875432111     1123579999999999999865

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.2e-22  Score=175.50  Aligned_cols=206  Identities=15%  Similarity=0.099  Sum_probs=144.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      .+|++|||||+|+||++++++|+++|++|+++.++. +..+....   ....++.++.+|++| .+++.+++.+      
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLAD-EAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            478999999999999999999999999998877653 33322211   124568899999999 6666665532      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----CCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||||....        ++++.++++|+.+++++++++.+.    +.+++|+++|...+...            .
T Consensus        87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~------------p  154 (258)
T PRK09134         87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN------------P  154 (258)
T ss_pred             CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC------------C
Confidence            38999999986432        234567899999999999988542    34689998886533211            1


Q ss_pred             hhhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCc--eeeccccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          203 VFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGN--IIMETEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~--~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      .+..|+.+|.+.|.+.+.      .+++++.|+||.+.+......  +.............+++|+|++++.++..+...
T Consensus       155 ~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~  234 (258)
T PRK09134        155 DFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQSPEDFARQHAATPLGRGSTPEEIAAAVRYLLDAPSVT  234 (258)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCcC
Confidence            135799999988866542      249999999999887542111  000000111223578999999999999877667


Q ss_pred             CcEEEeecC
Q 022216          275 YKVVEIISR  283 (301)
Q Consensus       275 ~~~~~v~~~  283 (301)
                      ++.+.+.++
T Consensus       235 g~~~~i~gg  243 (258)
T PRK09134        235 GQMIAVDGG  243 (258)
T ss_pred             CCEEEECCC
Confidence            778877764

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.8e-22  Score=177.42  Aligned_cols=208  Identities=15%  Similarity=0.141  Sum_probs=147.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ..+++|++|||||+|+||.+++++|+++|++|+++.|+... .+..   ......++.++.+|++| .+.+.+.+..   
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~  120 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEETVR  120 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999887543 2211   11134568899999999 7666665532   


Q ss_pred             ---CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 ---DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                         ++|+||||||....         +++...+++|+.++.++++++.+.  ..++||++||...|.....         
T Consensus       121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~---------  191 (290)
T PRK06701        121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNET---------  191 (290)
T ss_pred             HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCC---------
Confidence               38999999996421         134567899999999999998653  2368999999876643211         


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                         ...|..+|.+.+.+.+       ..|++++.|+||.+.++........     .........+.+++|+|++++.++
T Consensus       192 ---~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ll  268 (290)
T PRK06701        192 ---LIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFGSNTPMQRPGQPEELAPAYVFLA  268 (290)
T ss_pred             ---cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHc
Confidence               2457788888876543       3589999999999999864322110     001112234788999999997777


Q ss_pred             cCCC--CCCcEEEeec
Q 022216          269 LHPE--SSYKVVEIIS  282 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~  282 (301)
                      ....  ..+.++++.+
T Consensus       269 ~~~~~~~~G~~i~idg  284 (290)
T PRK06701        269 SPDSSYITGQMLHVNG  284 (290)
T ss_pred             CcccCCccCcEEEeCC
Confidence            6432  3466676665

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.90  E-value=1.2e-22  Score=174.86  Aligned_cols=188  Identities=14%  Similarity=0.151  Sum_probs=138.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.  ..    ....++.++++|++| .+++.+.+.+      ++
T Consensus         5 ~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--~~----~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   77 (252)
T PRK08220          5 DFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--LT----QEDYPFATFVLDVSD-AAAVAQVCQRLLAETGPL   77 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--hh----hcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence            45689999999999999999999999999999999876  11    134578899999999 7666665532      38


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        +++...+++|+.++.++++++.    +.+.++||++||......            ...+
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~------------~~~~  145 (252)
T PRK08220         78 DVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVP------------RIGM  145 (252)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccC------------CCCC
Confidence            999999996432        2345678899999999999874    345579999999753211            1224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec--------------cccccccCCCCHHHHHHH
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME--------------TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~--------------~~~~~~~~~v~~~Dva~~  263 (301)
                      ..|+.+|.+.+.+.+       .+|+++++|+||.+.|+.........              ........+.+++|+|++
T Consensus       146 ~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~  225 (252)
T PRK08220        146 AAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLGIPLGKIARPQEIANA  225 (252)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhcCCCcccCCHHHHHHH
Confidence            678889998886553       36899999999999998643211000              001122357899999999


Q ss_pred             HHHHhc
Q 022216          264 AVEALL  269 (301)
Q Consensus       264 ~~~~l~  269 (301)
                      ++.++.
T Consensus       226 ~~~l~~  231 (252)
T PRK08220        226 VLFLAS  231 (252)
T ss_pred             HHHHhc
Confidence            976664

>PRK12320 hypothetical protein; Provisional

Probab=99.90  E-value=2.3e-22  Score=191.95  Aligned_cols=194  Identities=20%  Similarity=0.243  Sum_probs=146.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+||||||+||||++++++|+++|++|++++|.+...      ...+++++.+|++| . .+.+++.+ +|+|||+|+..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~------~~~~ve~v~~Dl~d-~-~l~~al~~-~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA------LDPRVDYVCASLRN-P-VLQELAGE-ADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc------ccCCceEEEccCCC-H-HHHHHhcC-CCEEEEcCccC
Confidence            5799999999999999999999999999999875431      22478899999999 5 47788888 99999999864


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEE
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~  226 (301)
                      ...    ..++|+.|+.|++++|++.++ ++|++||..  |..      ..         |.    .+|.++..++++++
T Consensus        72 ~~~----~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~~--G~~------~~---------~~----~aE~ll~~~~~p~~  125 (699)
T PRK12320         72 TSA----PGGVGITGLAHVANAAARAGA-RLLFVSQAA--GRP------EL---------YR----QAETLVSTGWAPSL  125 (699)
T ss_pred             ccc----hhhHHHHHHHHHHHHHHHcCC-eEEEEECCC--CCC------cc---------cc----HHHHHHHhcCCCEE
Confidence            321    235899999999999999997 899999862  311      00         11    46777777789999


Q ss_pred             EEecCcccCCCCCCc---eeec----cccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhh
Q 022216          227 IIRPGGLRNEPPTGN---IIME----TEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIK  299 (301)
Q Consensus       227 ~irpg~v~~~~~~~~---~~~~----~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~  299 (301)
                      ++|++++||+.....   +...    ........++|++|++++++.++..+.  ..+||++++   +.+|+.|+++.+.
T Consensus       126 ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI~vIyVdDvv~alv~al~~~~--~GiyNIG~~---~~~Si~el~~~i~  200 (699)
T PRK12320        126 VIRIAPPVGRQLDWMVCRTVATLLRSKVSARPIRVLHLDDLVRFLVLALNTDR--NGVVDLATP---DTTNVVTAWRLLR  200 (699)
T ss_pred             EEeCceecCCCCcccHhHHHHHHHHHHHcCCceEEEEHHHHHHHHHHHHhCCC--CCEEEEeCC---CeeEHHHHHHHHH
Confidence            999999999854321   1100    000111124699999999988887653  349999996   9999999988875


Q ss_pred             c
Q 022216          300 Q  300 (301)
Q Consensus       300 ~  300 (301)
                      .
T Consensus       201 ~  201 (699)
T PRK12320        201 S  201 (699)
T ss_pred             H
Confidence            3

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.1e-22  Score=175.19  Aligned_cols=202  Identities=15%  Similarity=0.095  Sum_probs=143.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.+..     ....++.++++|++| .+++.+.+..      ++
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~-----~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   76 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET-----VDGRPAEFHAADVRD-PDQVAALVDAIVERHGRL   76 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh-----hcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            45789999999999999999999999999999999986541     133578899999999 6666665532      38


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH-----cCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK-----RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~-----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      |+||||||....        ++++..+++|+.++.++++++.+     .+.++||++||...+...            ..
T Consensus        77 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~~  144 (252)
T PRK07856         77 DVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPS------------PG  144 (252)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCC------------CC
Confidence            999999996432        23456789999999999998853     234799999998643211            12


Q ss_pred             hhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhcCC
Q 022216          204 FGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      +..|..+|.+.+.+.+.      ..++++.|+||.+.+++........      ........+..++|+|++++.++...
T Consensus       145 ~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~L~~~~  224 (252)
T PRK07856        145 TAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPLGRLATPADIAWACLFLASDL  224 (252)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcc
Confidence            46788999999876642      2389999999999988643211000      00011223568999999997665432


Q ss_pred             C--CCCcEEEeec
Q 022216          272 E--SSYKVVEIIS  282 (301)
Q Consensus       272 ~--~~~~~~~v~~  282 (301)
                      .  ..++.+.+.+
T Consensus       225 ~~~i~G~~i~vdg  237 (252)
T PRK07856        225 ASYVSGANLEVHG  237 (252)
T ss_pred             cCCccCCEEEECC
Confidence            2  3455666654

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.5e-22  Score=172.29  Aligned_cols=206  Identities=16%  Similarity=0.137  Sum_probs=145.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC----chhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL----DKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~----~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      +++|++|||||+|+||+++++.|+++|++|+++.|..    +..++..   .....++.++.+|++| .+++.+.+..  
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~   82 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRD-FAATRAALDAGV   82 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHH
Confidence            4578999999999999999999999999999877643    2222211   1124578899999999 7666665531  


Q ss_pred             ----CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH-----HcCCCEEEEecccccccccCCCCCCcc
Q 022216          135 ----DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~-----~~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                          ++|+||||||....        +++...+++|+.++.++++++.     +.+.++||++||...+...        
T Consensus        83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------  154 (249)
T PRK12827         83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGN--------  154 (249)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCC--------
Confidence                39999999997542        1344567899999999999987     4556799999998754321        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc--ccccccCCCCHHHHHHHHHHHh
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET--EDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~--~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                          ..+..|..+|.+.+.+.+       ..++++++|+||++.++..........  .......+.+++|+|++++.++
T Consensus       155 ----~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~  230 (249)
T PRK12827        155 ----RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPTEHLLNPVPVQRLGEPDEVAALVAFLV  230 (249)
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchHHHHHhhCCCcCCcCHHHHHHHHHHHc
Confidence                123567888888775543       258999999999999986543321100  0111122458999999997777


Q ss_pred             cCCC--CCCcEEEeec
Q 022216          269 LHPE--SSYKVVEIIS  282 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~  282 (301)
                      ....  ..++.+++.+
T Consensus       231 ~~~~~~~~g~~~~~~~  246 (249)
T PRK12827        231 SDAASYVTGQVIPVDG  246 (249)
T ss_pred             CcccCCccCcEEEeCC
Confidence            5432  3466777765

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.90  E-value=1.3e-22  Score=175.13  Aligned_cols=209  Identities=17%  Similarity=0.171  Sum_probs=148.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++++|+||||||+|+||++++++|+++|++|++++|+....++...   ....++.++.+|++| .+++.+++..    
T Consensus         7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~   85 (255)
T PRK06113          7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFALSK   85 (255)
T ss_pred             cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999988765543321   123468889999999 7666554432    


Q ss_pred             --CCCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 --DSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                        ++|+||||||....       ++++..+++|+.++.++++++.    +.+.++||++||.....   +         .
T Consensus        86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---~---------~  153 (255)
T PRK06113         86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---K---------N  153 (255)
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC---C---------C
Confidence              38999999996432       2344557899999999999985    33446999999986321   1         1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHHhc
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ..+..|+.+|.+.+.+.+       ..|+++++|.||.+.+++........     ........+.+++|++++++.++.
T Consensus       154 ~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~  233 (255)
T PRK06113        154 INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCS  233 (255)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC
Confidence            224568899999887664       35899999999999998644321000     001112335789999999977664


Q ss_pred             CCC--CCCcEEEeecC
Q 022216          270 HPE--SSYKVVEIISR  283 (301)
Q Consensus       270 ~~~--~~~~~~~v~~~  283 (301)
                      ...  ..++++++.++
T Consensus       234 ~~~~~~~G~~i~~~gg  249 (255)
T PRK06113        234 PAASWVSGQILTVSGG  249 (255)
T ss_pred             ccccCccCCEEEECCC
Confidence            322  24667776664

>PRK12742 oxidoreductase; Provisional

Probab=99.90  E-value=9.7e-23  Score=173.75  Aligned_cols=204  Identities=16%  Similarity=0.180  Sum_probs=140.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-CchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi  140 (301)
                      +++|+||||||+|+||++++++|+++|++|+++.|+ .+..+++..  ..++.++.+|++| .+++.+.+..  ++|+||
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~--~~~~~~~~~D~~~-~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ--ETGATAVQTDSAD-RDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH--HhCCeEEecCCCC-HHHHHHHHHHhCCCcEEE
Confidence            468999999999999999999999999999887664 333333322  1246788999999 6666665543  499999


Q ss_pred             EccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHH
Q 022216          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (301)
Q Consensus       141 ~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~s  210 (301)
                      ||||....        ++++..+++|+.+++++++.+.+.  ..+++|++||....  ..         +......|+.+
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~--~~---------~~~~~~~Y~~s  149 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD--RM---------PVAGMAAYAAS  149 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc--cC---------CCCCCcchHHh
Confidence            99986432        235667899999999998777543  24699999997531  10         11234678899


Q ss_pred             HHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc---ccccccCCCCHHHHHHHHHHHhcCCC--CCCcEE
Q 022216          211 KLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET---EDTLYEGTISRDQVAEVAVEALLHPE--SSYKVV  278 (301)
Q Consensus       211 K~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~---~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~  278 (301)
                      |.+.+.+.+       ..|+++++|+||.+.+++.........   .......+.+++|+|+++..++....  ..+.++
T Consensus       150 Kaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~l~s~~~~~~~G~~~  229 (237)
T PRK12742        150 KSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMKDMMHSFMAIKRHGRPEEVAGMVAWLAGPEASFVTGAMH  229 (237)
T ss_pred             HHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCcccCCEE
Confidence            999987653       358999999999999986432211000   01112346789999999865553322  234444


Q ss_pred             Eee
Q 022216          279 EII  281 (301)
Q Consensus       279 ~v~  281 (301)
                      .+.
T Consensus       230 ~~d  232 (237)
T PRK12742        230 TID  232 (237)
T ss_pred             EeC
Confidence            443

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=1.1e-22  Score=175.16  Aligned_cols=206  Identities=16%  Similarity=0.141  Sum_probs=143.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-CchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-------C
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-------D  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-------~  135 (301)
                      +++|++|||||+|+||+++++.|+++|++|+++.++ .+..+.+......++.++++|++| .+++.+++.+       +
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTD-REQVQAMFATATEHFGKP   81 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHhCCC
Confidence            457899999999999999999999999999887654 333333322223578899999999 7777666543       3


Q ss_pred             CCEEEEccCCCCC--------------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcc
Q 022216          136 SEAVVCATGFQPG--------------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                      +|+||||||....              +++...+++|+.++.++++++.    +.+.++||++||.....          
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~----------  151 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN----------  151 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----------
Confidence            9999999985310              1234568999999999999984    34457999999964221          


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~~~  265 (301)
                        +..++..|+.+|.+.+.+++.       .|++++.|+||++.++........     .........+.+++|+|+++.
T Consensus       152 --~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~  229 (253)
T PRK08642        152 --PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATTPLRKVTTPQEFADAVL  229 (253)
T ss_pred             --CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcCCcCCCCCHHHHHHHHH
Confidence              112346799999999977652       589999999999988743221100     001112234789999999997


Q ss_pred             HHhcCC--CCCCcEEEeec
Q 022216          266 EALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       266 ~~l~~~--~~~~~~~~v~~  282 (301)
                      .++..+  ...|+++.+.+
T Consensus       230 ~l~~~~~~~~~G~~~~vdg  248 (253)
T PRK08642        230 FFASPWARAVTGQNLVVDG  248 (253)
T ss_pred             HHcCchhcCccCCEEEeCC
Confidence            766533  24455555544

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.90  E-value=9.5e-23  Score=176.31  Aligned_cols=198  Identities=17%  Similarity=0.190  Sum_probs=135.7

Q ss_pred             cccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCch------hhhccccCCCCeEEEEccCCCChHhHHHHhcC
Q 022216           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDK------AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      ++++|+++||||+  ++||++++++|+++|++|++..|+.+.      .+++.. ....+.++.+|++| .+++.+.+..
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d-~~~v~~~~~~   80 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTE-PLNPSLFLPCDVQD-DAQIEETFET   80 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHh-ccCcceEeecCcCC-HHHHHHHHHH
Confidence            3568999999986  899999999999999999887664331      222211 22356788999999 6666654432


Q ss_pred             ------CCCEEEEccCCCC------------CCCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCC
Q 022216          135 ------DSEAVVCATGFQP------------GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       135 ------~~d~Vi~~Ag~~~------------~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~  194 (301)
                            ++|++|||||+..            .++|+..+++|+.+++.+++++.+.  ..++||++||....   .+   
T Consensus        81 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~---~~---  154 (258)
T PRK07370         81 IKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV---RA---  154 (258)
T ss_pred             HHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc---cC---
Confidence                  4999999999642            1246778999999999999987431  12699999997522   11   


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc-----eeec-cccccccCCCCHHHHH
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN-----IIME-TEDTLYEGTISRDQVA  261 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~-----~~~~-~~~~~~~~~v~~~Dva  261 (301)
                            ...+..|+.+|.+.+.+.+       ..||+++.|.||.+.+++....     .... ........+..++|+|
T Consensus       155 ------~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva  228 (258)
T PRK07370        155 ------IPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAPLRRTVTQTEVG  228 (258)
T ss_pred             ------CcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCCcCcCCCHHHHH
Confidence                  1224678899998886654       3689999999999999853211     0000 0011122356899999


Q ss_pred             HHHHHHhcCCCCCC
Q 022216          262 EVAVEALLHPESSY  275 (301)
Q Consensus       262 ~~~~~~l~~~~~~~  275 (301)
                      +++..++ ++...+
T Consensus       229 ~~~~fl~-s~~~~~  241 (258)
T PRK07370        229 NTAAFLL-SDLASG  241 (258)
T ss_pred             HHHHHHh-Chhhcc
Confidence            9996554 444333

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1e-22  Score=179.53  Aligned_cols=196  Identities=18%  Similarity=0.148  Sum_probs=144.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC--CCCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++++++|||||+|+||.++++.|+++|++|++++|+.++++++....  ...+..+.+|++| .+++.+.+.+      
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTD-LAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999999887766543322  2456667799999 6666555431      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ++|+||||||....        ++++.++++|+.|+.++++++...   +.++||++||...+...            ..
T Consensus        85 ~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~  152 (296)
T PRK05872         85 GIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAA------------PG  152 (296)
T ss_pred             CCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCC------------CC
Confidence            49999999997432        234567899999999999988432   23699999998754321            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-------cc-ccccccCCCCHHHHHHHHHHHh
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-------ET-EDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-------~~-~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ...|+.+|...+.+.+       ..|++++.+.||++.+++.......       .. .......+++++|+|++++.++
T Consensus       153 ~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~i~~~~  232 (296)
T PRK05872        153 MAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWPLRRTTSVEKCAAAFVDGI  232 (296)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCcccCCCCHHHHHHHHHHHH
Confidence            4678899999887653       3689999999999999864432110       00 0111234678999999998888


Q ss_pred             cCC
Q 022216          269 LHP  271 (301)
Q Consensus       269 ~~~  271 (301)
                      ...
T Consensus       233 ~~~  235 (296)
T PRK05872        233 ERR  235 (296)
T ss_pred             hcC
Confidence            754

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.90  E-value=1.3e-22  Score=174.99  Aligned_cols=206  Identities=14%  Similarity=0.066  Sum_probs=142.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhccccCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++++|++|||||+|+||++++++|++.|++|+++++.... ..+........+..+++|++| .+++.+.+..      
T Consensus         6 ~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   84 (253)
T PRK08993          6 FSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRK-IDGIPALLERAVAEFG   84 (253)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            35678999999999999999999999999999987765421 111111134567889999999 6666655532      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      ++|++|||||....        ++|+.++++|+.++.++++++.+    .+ .++||++||...+....           
T Consensus        85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-----------  153 (253)
T PRK08993         85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGI-----------  153 (253)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCC-----------
Confidence            49999999996432        34667889999999999998743    22 36899999987654221           


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHh
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       ....|+.+|.+.+.+.+       +.|++++.|+||++.+++........      ........+..++|+|+.++.++
T Consensus       154 -~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~  232 (253)
T PRK08993        154 -RVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPVVFLA  232 (253)
T ss_pred             -CCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence             12467888988876553       36899999999999998643210000      00011234678999999997666


Q ss_pred             cCCC--CCCcEEEe
Q 022216          269 LHPE--SSYKVVEI  280 (301)
Q Consensus       269 ~~~~--~~~~~~~v  280 (301)
                      ....  ..++++.+
T Consensus       233 s~~~~~~~G~~~~~  246 (253)
T PRK08993        233 SSASDYINGYTIAV  246 (253)
T ss_pred             CccccCccCcEEEE
Confidence            4332  23444444

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.89  E-value=9.9e-23  Score=176.45  Aligned_cols=208  Identities=16%  Similarity=0.151  Sum_probs=147.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      .++++++|||||+|+||+++++.|+++|++|++++|+.+..+++... ...++.++.+|++| ++++.+++..      +
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   86 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVAD-PAQVERVFDTAVERFGG   86 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC-HHHHHHHHHHHHHHhCC
Confidence            35689999999999999999999999999999999987665543321 12267889999999 7666665531      3


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCC-CEEEEecccccccccCCCCCCcchhhc
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGV-NRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      +|+|||+||....         +++..++++|+.++.++++++.    +.+. ++||++||...+.   +.         
T Consensus        87 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~---~~---------  154 (264)
T PRK12829         87 LDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL---GY---------  154 (264)
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc---CC---------
Confidence            9999999997521         2345678999999999988873    3344 5788888865321   11         


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----------ec---c--ccccccCCCCHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----------ME---T--EDTLYEGTISRDQ  259 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----------~~---~--~~~~~~~~v~~~D  259 (301)
                      .....|+.+|.+.|.+++       ..++++++||||+++|++......          ..   .  .......+++++|
T Consensus       155 ~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  234 (264)
T PRK12829        155 PGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKISLGRMVEPED  234 (264)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCCCCCCCCHHH
Confidence            123568889998887654       258999999999999986432210          00   0  0011224789999


Q ss_pred             HHHHHHHHhcCC--CCCCcEEEeecC
Q 022216          260 VAEVAVEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       260 va~~~~~~l~~~--~~~~~~~~v~~~  283 (301)
                      +|+++..++...  ...++.+++.++
T Consensus       235 ~a~~~~~l~~~~~~~~~g~~~~i~~g  260 (264)
T PRK12829        235 IAATALFLASPAARYITGQAISVDGN  260 (264)
T ss_pred             HHHHHHHHcCccccCccCcEEEeCCC
Confidence            999997776532  235778888875

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.1e-22  Score=182.06  Aligned_cols=196  Identities=16%  Similarity=0.146  Sum_probs=141.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      .+++++|+||||+|+||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++..     
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~~~~~~   83 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHHC
Confidence            3568999999999999999999999999999999998776554332   134578899999999 7666655431     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|++|||||....        ++++..+++|+.|..++++++    ++.+.++||++||...|...            
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~------------  151 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSI------------  151 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCC------------
Confidence             39999999996432        234567889988877766555    45556799999999765322            


Q ss_pred             chhhHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCce-eeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          202 NVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNI-IMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .....|..+|.+.+.+.+         ..++++++|+||.+.++...... .............+++|+|++++.++.++
T Consensus       152 ~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~pe~vA~~i~~~~~~~  231 (334)
T PRK07109        152 PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWARSRLPVEPQPVPPIYQPEVVADAILYAAEHP  231 (334)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhhhhhccccccCCCCCCCHHHHHHHHHHHHhCC
Confidence            123568888888765442         14699999999999988532210 11111122234678999999999988776

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.89  E-value=2.1e-22  Score=172.76  Aligned_cols=207  Identities=18%  Similarity=0.127  Sum_probs=146.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-Cchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++++|||||+|+||++++++|+++|++|+++.++ ++..++..   .....++.++.+|++| .+++.+++..     
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSK-VEDANRLVEEAVNHF   82 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            457999999999999999999999999999876543 33333221   1133568899999999 7666665543     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|+||||||....        ++++..+++|+.++.++++++..    .+.++||++||...+...            
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  150 (247)
T PRK12935         83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGG------------  150 (247)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCC------------
Confidence             48999999997432        23456689999999999999853    345799999997543211            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHhcC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .+...|..+|.+.+.+.+       ..++++++++||.+.++........    .........+.+++|++++++.++..
T Consensus       151 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~edva~~~~~~~~~  230 (247)
T PRK12935        151 FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVAKIPKKRFGQADEIAKGVVYLCRD  230 (247)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHHHHHHHHHhCCCCCCcCHHHHHHHHHHHcCc
Confidence            124578899998776543       2589999999999988753321100    00011123478999999999777754


Q ss_pred             CC-CCCcEEEeecC
Q 022216          271 PE-SSYKVVEIISR  283 (301)
Q Consensus       271 ~~-~~~~~~~v~~~  283 (301)
                      .. ..++++++.++
T Consensus       231 ~~~~~g~~~~i~~g  244 (247)
T PRK12935        231 GAYITGQQLNINGG  244 (247)
T ss_pred             ccCccCCEEEeCCC
Confidence            32 45778888774

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=2e-22  Score=172.12  Aligned_cols=192  Identities=19%  Similarity=0.185  Sum_probs=142.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++++++||||+|+||++++++|+++|++|++++|++++.++...   ....++.++.+|+++ .+++.+.++.      
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD-YEEVTAAIEQLKNELG   83 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999999998765543321   134578899999999 7777666541      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||||....        ++++..+++|+.++.++++++.    +.+.+++|++||...+...            .
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------~  151 (239)
T PRK07666         84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGA------------A  151 (239)
T ss_pred             CccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCC------------C
Confidence            39999999986432        2235568999999999988875    3456799999998644321            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ....|+.+|.+.+.+++       +.|+++++|+||.+.+++.......   ......+++++|+|+.++.++..+
T Consensus       152 ~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~l~~~  224 (239)
T PRK07666        152 VTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDLGLT---DGNPDKVMQPEDLAEFIVAQLKLN  224 (239)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhcccc---ccCCCCCCCHHHHHHHHHHHHhCC
Confidence            23557888887765542       3689999999999999865432111   111234689999999999988765

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=1.7e-22  Score=175.99  Aligned_cols=205  Identities=18%  Similarity=0.155  Sum_probs=138.1

Q ss_pred             cccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCchh---hhccccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++|++|||||++  +||++++++|+++|++|++.+|+....   +++..+. ....++++|++| .+++.+.+..   
T Consensus         4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~-g~~~~~~~Dv~d-~~~v~~~~~~~~~   81 (271)
T PRK06505          4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESL-GSDFVLPCDVED-IASVDAVFEALEK   81 (271)
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhc-CCceEEeCCCCC-HHHHHHHHHHHHH
Confidence            35789999999997  999999999999999999988875322   2221111 223578999999 6666554422   


Q ss_pred             ---CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 ---DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                         ++|++|||||....            ++|+..+++|+.+++++++++...  ..++||++||.+...   +      
T Consensus        82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~---~------  152 (271)
T PRK06505         82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR---V------  152 (271)
T ss_pred             HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc---c------
Confidence               49999999996421            346677899999999998887432  226899999975321   1      


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee------eccccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII------METEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~------~~~~~~~~~~~v~~~Dva~~~  264 (301)
                         ...+..|..+|.+.+.+.+       .+||+++.|.||.+.+++......      ..........+..++|+|+++
T Consensus       153 ---~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peeva~~~  229 (271)
T PRK06505        153 ---MPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPLRRTVTIDEVGGSA  229 (271)
T ss_pred             ---CCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCccccCCHHHHHHHH
Confidence               1124568888888876543       368999999999999986421100      000011122356899999999


Q ss_pred             HHHhcCCCC---CCcEEEeec
Q 022216          265 VEALLHPES---SYKVVEIIS  282 (301)
Q Consensus       265 ~~~l~~~~~---~~~~~~v~~  282 (301)
                      +.++. +..   .++++.+.+
T Consensus       230 ~fL~s-~~~~~itG~~i~vdg  249 (271)
T PRK06505        230 LYLLS-DLSSGVTGEIHFVDS  249 (271)
T ss_pred             HHHhC-ccccccCceEEeecC
Confidence            66554 433   344444443

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.1e-22  Score=175.08  Aligned_cols=208  Identities=13%  Similarity=0.142  Sum_probs=146.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++++|++|||||+|+||.+++++|+++|++|++++|+.+..+++...   ...++.++++|++| .+++.+++..    
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   82 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE-MEQIDALFAHIRER   82 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999987665543321   23467889999999 6655554432    


Q ss_pred             --CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 --DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        ++|+||||||....         ++++..+++|+.+...+++++    ++.+.+++|++||...+..           
T Consensus        83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------  151 (252)
T PRK07035         83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSP-----------  151 (252)
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCC-----------
Confidence              39999999985321         234567899999999888777    3445679999999753321           


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~  266 (301)
                       ...++.|+.+|.+.+.+.+       ..|++++.|.||.+.+++........      ........+..++|+|++++.
T Consensus       152 -~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  230 (252)
T PRK07035        152 -GDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIPLRRHAEPSEMAGAVLY  230 (252)
T ss_pred             -CCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCCCCCcCCHHHHHHHHHH
Confidence             1234678999999987664       35899999999999987643221100      001112346789999999966


Q ss_pred             HhcCCC--CCCcEEEeec
Q 022216          267 ALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~  282 (301)
                      ++....  ..++++.+.+
T Consensus       231 l~~~~~~~~~g~~~~~dg  248 (252)
T PRK07035        231 LASDASSYTTGECLNVDG  248 (252)
T ss_pred             HhCccccCccCCEEEeCC
Confidence            554332  3455555543

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=3e-22  Score=172.67  Aligned_cols=205  Identities=17%  Similarity=0.135  Sum_probs=142.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      .|++|||||+|+||++++++|+++|++|++++|+... .++.   ......++.++.+|++| .+++.+.+..      +
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVAD-LSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence            3789999999999999999999999999999987532 2211   11133578999999999 6665554431      3


Q ss_pred             CCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHHHc-----C-----CCEEEEecccccccccCCCCCC
Q 022216          136 SEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRKR-----G-----VNRFILISSILVNGAAMGQILN  195 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~~~-----~-----~~~iV~~SS~~~~~~~~~~~~~  195 (301)
                      +|+||||||....          ++++..+++|+.++.++++++.+.     +     .++||++||...+...      
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------  154 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS------  154 (256)
T ss_pred             CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC------
Confidence            9999999986421          234556899999999999988432     1     4679999998654221      


Q ss_pred             cchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHHHHHH
Q 022216          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~  263 (301)
                            ...+.|+.+|.+.|.+.+       .+|+++++|+||.+.++........     .........+.+++|++++
T Consensus       155 ------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~  228 (256)
T PRK12745        155 ------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAKGLVPMPRWGEPEDVARA  228 (256)
T ss_pred             ------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHHhhhhhcCCCcCCCcCHHHHHHH
Confidence                  123568888988876543       3689999999999998764321100     0001112346689999999


Q ss_pred             HHHHhcCCC--CCCcEEEeecC
Q 022216          264 AVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       264 ~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +..++....  ..+.+|++.++
T Consensus       229 i~~l~~~~~~~~~G~~~~i~gg  250 (256)
T PRK12745        229 VAALASGDLPYSTGQAIHVDGG  250 (256)
T ss_pred             HHHHhCCcccccCCCEEEECCC
Confidence            876664332  34677888664

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=2.5e-22  Score=171.53  Aligned_cols=196  Identities=19%  Similarity=0.265  Sum_probs=140.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc----ccCCC-CeEEEEccCCCChHhHHHH-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----SKDNP-SLQIVKADVTEGSAKLSEA-----  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~----~~~~~-~~~~~~~Dl~~~~~~~~~~-----  131 (301)
                      ..+.+|+|+|||||+|||.++|.+|+++|.+++++.|....++...    ..... ++.++++|++| .+++.+.     
T Consensus         8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~-~~~~~~~~~~~~   86 (282)
T KOG1205|consen    8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD-EESVKKFVEWAI   86 (282)
T ss_pred             HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC-HHHHHHHHHHHH
Confidence            4568999999999999999999999999999888888776665542    11223 59999999999 7777644     


Q ss_pred             --hcCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcc
Q 022216          132 --IGDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       132 --~~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                        |++ +|++|||||....        .+....+++|+.|+..+.+++    ++.+-++||.+||+..+-   ..|    
T Consensus        87 ~~fg~-vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~---~~P----  158 (282)
T KOG1205|consen   87 RHFGR-VDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM---PLP----  158 (282)
T ss_pred             HhcCC-CCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc---CCC----
Confidence              455 9999999997542        234568899999999988887    445558999999997321   111    


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcC--CcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHH--HHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSG--INYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAE--VAVE  266 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~--i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~--~~~~  266 (301)
                           ....|.+||.+.+.+.+       ..+  +.+ .|.||+|.|....+.................+|++.  .+..
T Consensus       159 -----~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (282)
T KOG1205|consen  159 -----FRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGKELLGEEGKSQQGPFLRTEDVADPEAVAY  232 (282)
T ss_pred             -----cccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccchhhccccccccccchhhhhhhhhHHHHHH
Confidence                 12377899999987653       233  333 699999999876665544333222223455666654  6767


Q ss_pred             HhcCCC
Q 022216          267 ALLHPE  272 (301)
Q Consensus       267 ~l~~~~  272 (301)
                      .+..+.
T Consensus       233 ~i~~~~  238 (282)
T KOG1205|consen  233 AISTPP  238 (282)
T ss_pred             HHhcCc
Confidence            776664

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.89  E-value=2e-22  Score=174.30  Aligned_cols=211  Identities=18%  Similarity=0.164  Sum_probs=147.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|++|||||+|+||+++++.|+++|++|++++|+.++.+....   ....++.++.+|++| .+++.+.+..     
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~~~~   87 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETLERF   87 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999998766544321   133568889999999 7666544431     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc-----CCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR-----GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~-----~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||....        +++..++++|+.++.++++++.+.     +.++||++||...+....+.        
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~--------  159 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPE--------  159 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCcc--------
Confidence             39999999986321        234556789999999999987543     56799999998654322111        


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHHhc
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ..+...|..+|.+.+.+++       .+|+++++++||.+.++...+....   . ........+..++|+|+++..++.
T Consensus       160 ~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~  239 (259)
T PRK08213        160 VMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPLGRLGDDEDLKGAALLLAS  239 (259)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            1224678899999987664       2589999999999988754322110   0 001111234578999999866654


Q ss_pred             CC--CCCCcEEEeec
Q 022216          270 HP--ESSYKVVEIIS  282 (301)
Q Consensus       270 ~~--~~~~~~~~v~~  282 (301)
                      ..  ...|+.+++.+
T Consensus       240 ~~~~~~~G~~~~~~~  254 (259)
T PRK08213        240 DASKHITGQILAVDG  254 (259)
T ss_pred             ccccCccCCEEEECC
Confidence            32  23566666655

>PRK08643 acetoin reductase; Validated

Probab=99.89  E-value=1.3e-22  Score=174.98  Aligned_cols=204  Identities=18%  Similarity=0.168  Sum_probs=140.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      +|++|||||+|+||+++++.|+++|++|++++|+.+..++....   ...++.++++|++| ++++.+.+..      ++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCCC
Confidence            58999999999999999999999999999999987665443321   23578889999999 6666555432      39


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhcch
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      |+||||||+...        ++++..+++|+.++..+++++.+    .+ .++||++||...+...            ..
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~  148 (256)
T PRK08643         81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN------------PE  148 (256)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC------------CC
Confidence            999999986432        12455688999999888887743    22 3689999997643211            11


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----ec----------cccccccCCCCHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----ME----------TEDTLYEGTISRDQVA  261 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~----------~~~~~~~~~v~~~Dva  261 (301)
                      ...|+.+|.+.+.+.+       ..|++++.|+||++.+++......     ..          ........+.+++|+|
T Consensus       149 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va  228 (256)
T PRK08643        149 LAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDITLGRLSEPEDVA  228 (256)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccCCCCCCcCHHHHH
Confidence            3568889988876553       368999999999999886432110     00          0011122356899999


Q ss_pred             HHHHHHhcCCC--CCCcEEEeec
Q 022216          262 EVAVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       262 ~~~~~~l~~~~--~~~~~~~v~~  282 (301)
                      +++..++....  ..++++.+.+
T Consensus       229 ~~~~~L~~~~~~~~~G~~i~vdg  251 (256)
T PRK08643        229 NCVSFLAGPDSDYITGQTIIVDG  251 (256)
T ss_pred             HHHHHHhCccccCccCcEEEeCC
Confidence            99865554321  3455554443

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.4e-22  Score=175.85  Aligned_cols=205  Identities=16%  Similarity=0.161  Sum_probs=140.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHh-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      ++++|+++||||+|+||++++++|+++|++|++++|+++++++....     ...++.++.+|++| .+++.+.+     
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~   83 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD-EADVAAFAAAVEA   83 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC-HHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999988765543211     12467889999999 66665543     


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        +. +|+||||||....        ++|...+++|+.+.+.+++++    ++.+.++||++||...+...   +     
T Consensus        84 ~~g~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---~-----  154 (265)
T PRK07062         84 RFGG-VDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPE---P-----  154 (265)
T ss_pred             hcCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCC---C-----
Confidence              44 9999999996431        245667889999988887776    33445799999998643211   1     


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--------c--------cccccccCCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--------E--------TEDTLYEGTI  255 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--------~--------~~~~~~~~~v  255 (301)
                          ....|..+|.+.+.+.+       +.|++++.|+||++.+++....+..        .        ........+.
T Consensus       155 ----~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~  230 (265)
T PRK07062        155 ----HMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIPLGRLG  230 (265)
T ss_pred             ----CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCCcCCCC
Confidence                13456677776654432       4689999999999998864322110        0        0001112356


Q ss_pred             CHHHHHHHHHHHhcCCC---CCCcEEEeec
Q 022216          256 SRDQVAEVAVEALLHPE---SSYKVVEIIS  282 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~~---~~~~~~~v~~  282 (301)
                      .++|+|++++.++ ++.   ..++++.+.+
T Consensus       231 ~p~~va~~~~~L~-s~~~~~~tG~~i~vdg  259 (265)
T PRK07062        231 RPDEAARALFFLA-SPLSSYTTGSHIDVSG  259 (265)
T ss_pred             CHHHHHHHHHHHh-CchhcccccceEEEcC
Confidence            8999999996654 443   2344444433

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.7e-22  Score=172.25  Aligned_cols=207  Identities=18%  Similarity=0.151  Sum_probs=148.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|+++||||+|+||+++++.|+++|++|++++|++++..+...   ....++.++.+|++| .+++.+.+..      
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~   83 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD-PASVQRFFDAAAAALG   83 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999998775544322   123578999999999 7776665531      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||+|....        ++++..+++|+.++.++++++.+    .+.++||++||...+...            .
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  151 (250)
T PRK12939         84 GLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA------------P  151 (250)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC------------C
Confidence            39999999997432        13445678999999999988743    334699999997643221            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----eccccccccCCCCHHHHHHHHHHHhcC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----METEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ....|+.+|.+.+.+.+       ..+++++.|+||.+.++.......     ..........+++++|+|++++.++..
T Consensus       152 ~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~  231 (250)
T PRK12939        152 KLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLKGRALERLQVPDDVAGAVLFLLSD  231 (250)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc
Confidence            23568889998887654       368999999999998886432110     000111223468999999999887765


Q ss_pred             CC--CCCcEEEeecC
Q 022216          271 PE--SSYKVVEIISR  283 (301)
Q Consensus       271 ~~--~~~~~~~v~~~  283 (301)
                      +.  ..++.+.+.++
T Consensus       232 ~~~~~~G~~i~~~gg  246 (250)
T PRK12939        232 AARFVTGQLLPVNGG  246 (250)
T ss_pred             cccCccCcEEEECCC
Confidence            32  35666766653

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.89  E-value=1.7e-22  Score=175.33  Aligned_cols=201  Identities=18%  Similarity=0.194  Sum_probs=139.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++++|++|||||+|+||+++++.|+++|++|++++|+.....      ..++.++.+|++| .+++.+.+..      +
T Consensus         5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~------~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~   77 (266)
T PRK06171          5 LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ------HENYQFVPTDVSS-AEEVNHTVAEIIEKFGR   77 (266)
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc------cCceEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            3567899999999999999999999999999999998876532      2468889999999 6666655432      3


Q ss_pred             CCEEEEccCCCCC-----------------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCC
Q 022216          136 SEAVVCATGFQPG-----------------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~-----------------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~  194 (301)
                      +|+||||||....                 ++|+.++++|+.+++++++++.+    .+.++||++||...+...     
T Consensus        78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-----  152 (266)
T PRK06171         78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGS-----  152 (266)
T ss_pred             CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCC-----
Confidence            9999999996321                 13345789999999999998853    344689999998644221     


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCccc-CCCCCCce----e-----------eccc---c
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLR-NEPPTGNI----I-----------METE---D  248 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~-~~~~~~~~----~-----------~~~~---~  248 (301)
                             .....|..+|.+.+.+.+       ..|++++.|+||.+. +++.....    .           ....   .
T Consensus       153 -------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (266)
T PRK06171        153 -------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTKTST  225 (266)
T ss_pred             -------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhccccc
Confidence                   123578889988886653       368999999999986 43321100    0           0000   1


Q ss_pred             ccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeec
Q 022216          249 TLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       249 ~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~  282 (301)
                      .....+..++|+|+++. +|.++.+.+.+..+..
T Consensus       226 ~p~~r~~~~~eva~~~~-fl~s~~~~~itG~~i~  258 (266)
T PRK06171        226 IPLGRSGKLSEVADLVC-YLLSDRASYITGVTTN  258 (266)
T ss_pred             ccCCCCCCHHHhhhhee-eeeccccccceeeEEE
Confidence            11234568999999995 4555544444433333

>PRK09242 tropinone reductase; Provisional

Probab=99.89  E-value=2.3e-22  Score=173.71  Aligned_cols=207  Identities=15%  Similarity=0.130  Sum_probs=146.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHH-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEA-----  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~-----  131 (301)
                      +.+++|++|||||+|+||+++++.|+++|++|++++|+.+..++...+     ...++.++.+|++| .+++.+.     
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~   83 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD-DEDRRAILDWVE   83 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHH
Confidence            456789999999999999999999999999999999987665543321     13568889999999 6555443     


Q ss_pred             --hcCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcc
Q 022216          132 --IGDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       132 --~~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                        ++. +|+||||||....        ++++..+++|+.++.++++++.    +.+.++||++||...+...        
T Consensus        84 ~~~g~-id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~--------  154 (257)
T PRK09242         84 DHWDG-LHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHV--------  154 (257)
T ss_pred             HHcCC-CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCC--------
Confidence              344 9999999996321        3456678999999999988874    3455799999998654322        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~  264 (301)
                          .....|+.+|.+.+.+++       ..|++++.|+||++.+++.........      .......+..++|+++++
T Consensus       155 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~  230 (257)
T PRK09242        155 ----RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRRVGEPEEVAAAV  230 (257)
T ss_pred             ----CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence                123567888888876554       358999999999999987543211100      011112345889999999


Q ss_pred             HHHhcCCC--CCCcEEEeec
Q 022216          265 VEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~  282 (301)
                      ..++..+.  ..++.+.+.+
T Consensus       231 ~~l~~~~~~~~~g~~i~~~g  250 (257)
T PRK09242        231 AFLCMPAASYITGQCIAVDG  250 (257)
T ss_pred             HHHhCcccccccCCEEEECC
Confidence            76664322  2355555543

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.89  E-value=3.4e-22  Score=170.94  Aligned_cols=187  Identities=18%  Similarity=0.191  Sum_probs=141.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC---CCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---~~d~Vi~~  142 (301)
                      +++++||||+|+||++++++|+++|++|++++|+++..+++.. ...++.++.+|++| .+++.+++.+   .+|.+|||
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~d~~i~~   78 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT-QSANIFTLAFDVTD-HPGTKAALSQLPFIPELWIFN   78 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-hcCCCeEEEeeCCC-HHHHHHHHHhcccCCCEEEEc
Confidence            3689999999999999999999999999999998776655443 23568899999999 8888887765   37899999


Q ss_pred             cCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHH
Q 022216          143 TGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKL  212 (301)
Q Consensus       143 Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~  212 (301)
                      ||....        +++..++++|+.++.++++++...  +.+++|++||....-   +         ......|+.+|.
T Consensus        79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~---~---------~~~~~~Y~asK~  146 (240)
T PRK06101         79 AGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL---A---------LPRAEAYGASKA  146 (240)
T ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc---C---------CCCCchhhHHHH
Confidence            985321        124457899999999999998753  236899999975221   1         112356889999


Q ss_pred             HHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          213 QAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       213 ~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +.+.+.+       .+|+++++++||++.|++......      .....++++|+|+.++..+.++.
T Consensus       147 a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~~------~~~~~~~~~~~a~~i~~~i~~~~  207 (240)
T PRK06101        147 AVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNTF------AMPMIITVEQASQEIRAQLARGK  207 (240)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCCC------CCCcccCHHHHHHHHHHHHhcCC
Confidence            8887653       468999999999999986543210      11124789999999999998753

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.89  E-value=4e-22  Score=172.06  Aligned_cols=208  Identities=18%  Similarity=0.162  Sum_probs=146.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ..+++|+++||||+|+||++++++|+++|++|++++|+++.+.+...   ....++.++.+|++| .+++.+++.+    
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   85 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD-EEAVAAAFARIDAE   85 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHh
Confidence            45679999999999999999999999999999999998766544322   134568899999999 6666655532    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|+||||||....        ++++..+++|+.++.++++++.    +.+.++||++||...+...           
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~-----------  154 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVAR-----------  154 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCC-----------
Confidence              48999999996432        2345568899999999997774    3566899999998643211           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                       .....|..+|.+.+.+.+       ..+++++.|+||.+.++.........      ........+++++|++++++.+
T Consensus       155 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l  233 (256)
T PRK06124        155 -AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTPLGRWGRPEEIAGAAVFL  233 (256)
T ss_pred             -CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence             113567788888776543       35899999999999998633221100      0011123478999999999776


Q ss_pred             hcCCC--CCCcEEEeec
Q 022216          268 LLHPE--SSYKVVEIIS  282 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~  282 (301)
                      +..+.  ..|+.+.+.+
T Consensus       234 ~~~~~~~~~G~~i~~dg  250 (256)
T PRK06124        234 ASPAASYVNGHVLAVDG  250 (256)
T ss_pred             cCcccCCcCCCEEEECC
Confidence            65442  2355554443

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.89  E-value=1.4e-22  Score=176.63  Aligned_cols=174  Identities=20%  Similarity=0.273  Sum_probs=133.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchh------hhccc-------cCCCCeEEEEccCCCC-----hHh
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKA------KTTLS-------KDNPSLQIVKADVTEG-----SAK  127 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~------~~~~~-------~~~~~~~~~~~Dl~~~-----~~~  127 (301)
                      ++||+||||||+|.+++.+|+.+- .+|+|+.|..+..      .+...       ....+++++.+|+..+     ...
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            479999999999999999999874 5999999987632      22111       2457999999999863     366


Q ss_pred             HHHHhcCCCCEEEEccCCCC-CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcch--------
Q 022216          128 LSEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY--------  198 (301)
Q Consensus       128 ~~~~~~~~~d~Vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~--------  198 (301)
                      +.+.-.. +|.|||||+... -....+....|+.||..+++.|...+.|.++|+||++++......-.....        
T Consensus        81 ~~~La~~-vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~~  159 (382)
T COG3320          81 WQELAEN-VDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRN  159 (382)
T ss_pred             HHHHhhh-cceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccccc
Confidence            6666677 999999998543 344556678999999999999998888889999999986544322111111        


Q ss_pred             hhcchhhHHHHHHHHHHHHHHH---cCCcEEEEecCcccCCCCCCc
Q 022216          199 IFLNVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTGN  241 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~---~~i~~~~irpg~v~~~~~~~~  241 (301)
                      ......+.|++||+.+|.++++   .|++++++|||++.++...+.
T Consensus       160 ~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG~  205 (382)
T COG3320         160 VGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTGA  205 (382)
T ss_pred             ccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccCc
Confidence            1233457899999999998864   689999999999999876554

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.2e-22  Score=172.79  Aligned_cols=192  Identities=17%  Similarity=0.146  Sum_probs=137.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-------hcCCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGDDS  136 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~~~  136 (301)
                      +++|+++||||+|+||++++++|+++|++|++++|+.+..++...+...++.++++|++| .+++.+.       +++ +
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~-i   81 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGD-VAAQKALAQALAEAFGR-L   81 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHhCC-C
Confidence            457899999999999999999999999999999998766554433334578889999999 5544433       344 9


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEeccccc-ccccCCCCCCcchhhcchhh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILV-NGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~-~~~~~~~~~~~~~~~~~~~~  205 (301)
                      |+||||||....        ++++.++++|+.++.++++++.+.  ..+++|++||... |+.             ....
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~-------------~~~~  148 (249)
T PRK06500         82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM-------------PNSS  148 (249)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-------------CCcc
Confidence            999999986432        234567899999999999999642  2357888888542 221             1236


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce----eec------cccccccCCCCHHHHHHHHHHHh
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI----IME------TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~----~~~------~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      .|+.+|.+.|.+.+       ..|+++++|+||.+.+++.....    ...      ........+.+++|+|++++.++
T Consensus       149 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~  228 (249)
T PRK06500        149 VYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLGRFGTPEEIAKAVLYLA  228 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHc
Confidence            78899999987663       25899999999999998532110    000      00011123568999999997766


Q ss_pred             cC
Q 022216          269 LH  270 (301)
Q Consensus       269 ~~  270 (301)
                      ..
T Consensus       229 ~~  230 (249)
T PRK06500        229 SD  230 (249)
T ss_pred             Cc
Confidence            43

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.7e-22  Score=172.79  Aligned_cols=207  Identities=14%  Similarity=0.103  Sum_probs=146.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      .+++|+++||||+|+||++++++|+++|++|++++|+.++.++..   .....++.++.+|++| .+++.+.+..     
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~   82 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTR-DAEVKALVEQTIAAY   82 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999999876654332   1234578899999999 6666555432     


Q ss_pred             -CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||....         ++++.++++|+.+..++++++    ++.+.+++|++||...+...           
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~-----------  151 (253)
T PRK06172         83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAA-----------  151 (253)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC-----------
Confidence             38999999996421         235567889999998887765    34455799999998755422           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------ccccccCCCCHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~~~~~~v~~~Dva~~~~~  266 (301)
                       ..+..|..+|.+.+.+.+       ..|++++.|+||.+.+++.........       .......+.+++|+++.++.
T Consensus       152 -~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~~~~  230 (253)
T PRK06172        152 -PKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPVGRIGKVEEVASAVLY  230 (253)
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCCCCCccCHHHHHHHHHH
Confidence             124678899998886653       258999999999999886433211000       00111235689999999976


Q ss_pred             HhcCC--CCCCcEEEeec
Q 022216          267 ALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~--~~~~~~~~v~~  282 (301)
                      ++...  ...|+++.+.+
T Consensus       231 l~~~~~~~~~G~~i~~dg  248 (253)
T PRK06172        231 LCSDGASFTTGHALMVDG  248 (253)
T ss_pred             HhCccccCcCCcEEEECC
Confidence            66533  23455665555

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.89  E-value=3.2e-22  Score=173.59  Aligned_cols=208  Identities=16%  Similarity=0.096  Sum_probs=148.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++++|+++||||+|+||++++++|+++|++|+++.|+.++.++...   ....++.++++|++| .+++.+++..    
T Consensus         6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   84 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD-EDGVQAMVSQIEKE   84 (265)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999988776554322   123468899999999 7666665532    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|+||||||....        +++...+++|+.++..+++++.    +.+.++||++||.....   +         
T Consensus        85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---~---------  152 (265)
T PRK07097         85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL---G---------  152 (265)
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC---C---------
Confidence              39999999997432        2455677899999998888874    34567999999975211   1         


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee--eccc----------cccccCCCCHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII--METE----------DTLYEGTISRDQVA  261 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~--~~~~----------~~~~~~~v~~~Dva  261 (301)
                      ...+..|+.+|.+.+.+.+       ..|++++.|+||.+.++.......  ....          ......+..++|+|
T Consensus       153 ~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva  232 (265)
T PRK07097        153 RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTPAARWGDPEDLA  232 (265)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCCccCCcCHHHHH
Confidence            1124668889998876654       358999999999999986432211  0000          11122467899999


Q ss_pred             HHHHHHhcCC--CCCCcEEEeec
Q 022216          262 EVAVEALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       262 ~~~~~~l~~~--~~~~~~~~v~~  282 (301)
                      +.++.++..+  ...++++.+.+
T Consensus       233 ~~~~~l~~~~~~~~~g~~~~~~g  255 (265)
T PRK07097        233 GPAVFLASDASNFVNGHILYVDG  255 (265)
T ss_pred             HHHHHHhCcccCCCCCCEEEECC
Confidence            9998877653  23555555554

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=2.2e-22  Score=174.00  Aligned_cols=194  Identities=15%  Similarity=0.154  Sum_probs=135.4

Q ss_pred             hcccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCchh---hhccccCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           62 VSVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        62 ~~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      .++++|++|||||+  ++||++++++|+++|++|++.+|+....   +++.. ......++.+|++| .+++.+.+..  
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~-~~~v~~~~~~~~   83 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAE-ELDAPIFLPLDVRE-PGQLEAVFARIA   83 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHH-hhccceEEecCcCC-HHHHHHHHHHHH
Confidence            45679999999998  5999999999999999999988875432   22221 11235688999999 6655544322  


Q ss_pred             ----CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCc
Q 022216          135 ----DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                          ++|++|||||....            ++|+..+++|+.+.+++++++...  ..++||++||....   ..     
T Consensus        84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~---~~-----  155 (258)
T PRK07533         84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE---KV-----  155 (258)
T ss_pred             HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc---cC-----
Confidence                39999999996431            245678899999999999987432  22689999997521   11     


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~  263 (301)
                          ...+..|+.+|.+.+.+.+       .+|++++.|.||.+.+++........      ........+..++|+|++
T Consensus       156 ----~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~  231 (258)
T PRK07533        156 ----VENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAPLRRLVDIDDVGAV  231 (258)
T ss_pred             ----CccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCCcCCCCCHHHHHHH
Confidence                1224678899998876553       36899999999999998643210000      001112246789999999


Q ss_pred             HHHHhc
Q 022216          264 AVEALL  269 (301)
Q Consensus       264 ~~~~l~  269 (301)
                      ++.++.
T Consensus       232 ~~~L~s  237 (258)
T PRK07533        232 AAFLAS  237 (258)
T ss_pred             HHHHhC
Confidence            966654

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.89  E-value=4.3e-22  Score=170.34  Aligned_cols=207  Identities=19%  Similarity=0.146  Sum_probs=147.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +.+|+||||||+|+||+++++.|+++|++|+++.|++.+......   ....++.++.+|++| .+++.+.+.+      
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD-EAAVRALIEAAVEAFG   81 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            457899999999999999999999999999999998776443221   134578899999999 6666555542      


Q ss_pred             CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+|||+||.....        ++...++.|+.+..++++++.    +.+.++||++||......            ..
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~------------~~  149 (246)
T PRK05653         82 ALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTG------------NP  149 (246)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccC------------CC
Confidence            379999999864321        234567899999999988884    456689999999753211            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ++..|..+|.+.+.+.+       ..++++++||||.+.++........    .........+++++|+++++..++...
T Consensus       150 ~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~  229 (246)
T PRK05653        150 GQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKEIPLGRLGQPEEVANAVAFLASDA  229 (246)
T ss_pred             CCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCch
Confidence            24567788887765442       3589999999999999865421100    000111234678899999998877542


Q ss_pred             --CCCCcEEEeecC
Q 022216          272 --ESSYKVVEIISR  283 (301)
Q Consensus       272 --~~~~~~~~v~~~  283 (301)
                        ...++++++.++
T Consensus       230 ~~~~~g~~~~~~gg  243 (246)
T PRK05653        230 ASYITGQVIPVNGG  243 (246)
T ss_pred             hcCccCCEEEeCCC
Confidence              235778888774

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.89  E-value=5.4e-22  Score=176.27  Aligned_cols=209  Identities=18%  Similarity=0.171  Sum_probs=143.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ++++|+++||||++|||.+++++|+++|++|++++|+.++.++...+     ...++.++.+|++| .+++.+.+..   
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d-~~sv~~~~~~~~~   89 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS-LASVAALGEQLRA   89 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC-HHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999987765543221     23468899999999 7666655432   


Q ss_pred             ---CCCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccC-CCCCCcchhh
Q 022216          135 ---DSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAM-GQILNPAYIF  200 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~-~~~~~~~~~~  200 (301)
                         ++|+||||||....       ++++.++++|+.|.+.+++.+..   .+.++||++||...+.... ...... ...
T Consensus        90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~-~~~  168 (313)
T PRK05854         90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNW-ERS  168 (313)
T ss_pred             hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccc-ccc
Confidence               49999999996431       34566789999999988888742   2346999999986543211 111111 112


Q ss_pred             cchhhHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCceeeccc-c----cc---c--cC--CCCHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNIIMETE-D----TL---Y--EG--TISRDQ  259 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~~~~~-~----~~---~--~~--~v~~~D  259 (301)
                      ..++..|+.+|++.+.+.+         ..|++++.+.||.+.+++.......... .    ..   .  .+  ..++++
T Consensus       169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (313)
T PRK05854        169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDTLMVRLIRSLSARGFLVGTVES  248 (313)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhHHHHHHHHHHhhcccccCCHHH
Confidence            3456789999999876543         1379999999999998864321110000 0    00   0  01  246778


Q ss_pred             HHHHHHHHhcCCCC
Q 022216          260 VAEVAVEALLHPES  273 (301)
Q Consensus       260 va~~~~~~l~~~~~  273 (301)
                      -|...+.+..++..
T Consensus       249 ga~~~l~~a~~~~~  262 (313)
T PRK05854        249 AILPALYAATSPDA  262 (313)
T ss_pred             HHHHhhheeeCCCC
Confidence            88877777766653

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.2e-21  Score=169.68  Aligned_cols=193  Identities=15%  Similarity=0.190  Sum_probs=140.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      +++||||||+|+||+++++.|++.|++|++++|++.+.++..   .....++.++.+|++| .+++.+++..      ++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSD-AEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999999876544322   1134578899999999 7766665542      39


Q ss_pred             CEEEEccCCCCCCC---------CCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPGWD---------LFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~~~---------~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||......         +...+++|+.++.++++++.+   .+.+++|++||...+...            .+.
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~  147 (263)
T PRK06181         80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGV------------PTR  147 (263)
T ss_pred             CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCC------------CCc
Confidence            99999998654321         234478999999999999843   234799999998765321            124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----eccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----METEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ..|+.+|...+.+.+       ..++++++|+||.+.+++......     ..........+++++|+|++++.++...
T Consensus       148 ~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~~~~~~  226 (263)
T PRK06181        148 SGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALDGDGKPLGKSPMQESKIMSAEECAEAILPAIARR  226 (263)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhccccccccccccccccCCCCHHHHHHHHHHHhhCC
Confidence            678899998887653       358999999999999876432211     0001111125799999999998888753

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.89  E-value=3.9e-22  Score=172.91  Aligned_cols=207  Identities=19%  Similarity=0.136  Sum_probs=146.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++++++|||||+|+||+++++.|+++|++|++++|+.++.+++...   ...++.++.+|++| .+++.+++..     
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   85 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQAVEAF   85 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            45689999999999999999999999999999999987665543221   23568899999999 7766655431     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH-----cCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK-----RGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~-----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||....        +++..++++|+.++.++++++.+     .+.++||++||...+..            
T Consensus        86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------  153 (263)
T PRK07814         86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLA------------  153 (263)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCC------------
Confidence             39999999986332        23456789999999999999853     34579999999753211            


Q ss_pred             cchhhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCc-----eeecc-ccccccCCCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGN-----IIMET-EDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~-----~~~~~-~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ......|+.+|.+++.+.+.      .+++++.|+||.+.+++....     +.... .........+++|+|++++.++
T Consensus       154 ~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~  233 (263)
T PRK07814        154 GRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKATPLRRLGDPEDIAAAAVYLA  233 (263)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHc
Confidence            12346789999998876642      368999999999988753211     00000 0111123468999999997766


Q ss_pred             cCC--CCCCcEEEeec
Q 022216          269 LHP--ESSYKVVEIIS  282 (301)
Q Consensus       269 ~~~--~~~~~~~~v~~  282 (301)
                      ...  ...++.+.+.+
T Consensus       234 ~~~~~~~~g~~~~~~~  249 (263)
T PRK07814        234 SPAGSYLTGKTLEVDG  249 (263)
T ss_pred             CccccCcCCCEEEECC
Confidence            432  23455666654

>PRK06484 short chain dehydrogenase; Validated

Probab=99.89  E-value=2.5e-22  Score=190.52  Aligned_cols=207  Identities=15%  Similarity=0.113  Sum_probs=149.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ...+|++|||||+|+||++++++|+++|++|++++|+.++++++.......+..+.+|++| .+++.+.+..      ++
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITD-EAAVESAFAQIQARWGRL  344 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            3468999999999999999999999999999999998877665544334567789999999 6666555432      49


Q ss_pred             CEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          137 EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       137 d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      |+||||||....         ++|+.++++|+.+++++++++...  +.++||++||.+.+...            ....
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~  412 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLAL------------PPRN  412 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCC------------CCCc
Confidence            999999996421         245677899999999999998653  34699999998643211            2246


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------ccccccCCCCHHHHHHHHHHHhcCC
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .|+.+|...+.+.+       .+||+++.|+||.+.+++.........       .......+.+++|+|++++.++...
T Consensus       413 ~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dia~~~~~l~s~~  492 (520)
T PRK06484        413 AYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPLGRLGDPEEVAEAIAFLASPA  492 (520)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc
Confidence            78899999886654       358999999999999986432110000       0111223568999999997666432


Q ss_pred             C--CCCcEEEeec
Q 022216          272 E--SSYKVVEIIS  282 (301)
Q Consensus       272 ~--~~~~~~~v~~  282 (301)
                      .  ..++++.+.+
T Consensus       493 ~~~~~G~~i~vdg  505 (520)
T PRK06484        493 ASYVNGATLTVDG  505 (520)
T ss_pred             ccCccCcEEEECC
Confidence            2  3455666554

>PRK06194 hypothetical protein; Provisional

Probab=99.89  E-value=4.2e-22  Score=174.81  Aligned_cols=195  Identities=14%  Similarity=0.136  Sum_probs=139.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|++|||||+||||++++++|+++|++|++++|+.+.+++....   ...++.++.+|++| .+++.+++.+      
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD-AAQVEALADAALERFG   82 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence            4578999999999999999999999999999999987655443221   23468889999999 7777666542      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCC------CEEEEecccccccccCCCCCCc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGV------NRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~------~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                      ++|+||||||....        +++...+++|+.|+.++++++    .+.+.      ++||++||.+.+...       
T Consensus        83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------  155 (287)
T PRK06194         83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP-------  155 (287)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC-------
Confidence            38999999997542        234556889999999988885    44433      589999998765322       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHHH---------cCCcEEEEecCcccCCCCCCce----eeccc-ccc------------
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEPPTGNI----IMETE-DTL------------  250 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~~---------~~i~~~~irpg~v~~~~~~~~~----~~~~~-~~~------------  250 (301)
                           ...+.|+.+|.+.+.+.+.         .+++++.+.||.+.++......    ..... .+.            
T Consensus       156 -----~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (287)
T PRK06194        156 -----PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSERNRPADLANTAPPTRSQLIAQAMSQK  230 (287)
T ss_pred             -----CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccccccCchhcccCccccchhhHHHHHHHh
Confidence                 1235788999998876531         3588999999999887543210    11010 000            


Q ss_pred             --ccCCCCHHHHHHHHHHHhcCC
Q 022216          251 --YEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       251 --~~~~v~~~Dva~~~~~~l~~~  271 (301)
                        ....++++|+|+.++..+..+
T Consensus       231 ~~~~~~~s~~dva~~i~~~~~~~  253 (287)
T PRK06194        231 AVGSGKVTAEEVAQLVFDAIRAG  253 (287)
T ss_pred             hhhccCCCHHHHHHHHHHHHHcC
Confidence              012478999999998877543

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.89  E-value=2.4e-22  Score=173.79  Aligned_cols=207  Identities=18%  Similarity=0.206  Sum_probs=138.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      |++|||||+|+||++++++|+++|++|++++|+++..++...+  ...++.++.+|++| .+++.+.+..      ++|+
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSD-KDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC-HHHHHHHHHHHHHhcCCCCE
Confidence            5899999999999999999999999999999987665443221  12367889999999 7666655531      4999


Q ss_pred             EEEccCCCCC----------CCCCCceeeehHHHHHHHHHH----H-HcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          139 VVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----R-KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       139 Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~----~-~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ||||||....          ++|...+++|+.+...+.+++    . +.+.++||++||...+..            ...
T Consensus        80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~------------~~~  147 (259)
T PRK08340         80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEP------------MPP  147 (259)
T ss_pred             EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCC------------CCC
Confidence            9999996321          123345678888877665554    2 234579999999864321            112


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------ec---------cccccccCCCCHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------ME---------TEDTLYEGTISRDQV  260 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~~---------~~~~~~~~~v~~~Dv  260 (301)
                      ...|..+|.+.+.+.+       ..|++++.|.||++.+++......       ..         ........+..++|+
T Consensus       148 ~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dv  227 (259)
T PRK08340        148 LVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKRTGRWEEL  227 (259)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccCCCCHHHH
Confidence            3567788888876553       368999999999999986432100       00         001112235689999


Q ss_pred             HHHHHHHhcCCCCCCcEEEeecCCCCC
Q 022216          261 AEVAVEALLHPESSYKVVEIISRVDAP  287 (301)
Q Consensus       261 a~~~~~~l~~~~~~~~~~~v~~~~~~~  287 (301)
                      |++++ +|.++...+.+..+...|++.
T Consensus       228 a~~~~-fL~s~~~~~itG~~i~vdgg~  253 (259)
T PRK08340        228 GSLIA-FLLSENAEYMLGSTIVFDGAM  253 (259)
T ss_pred             HHHHH-HHcCcccccccCceEeecCCc
Confidence            99995 455554444444433333333

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.89  E-value=1.1e-21  Score=168.07  Aligned_cols=207  Identities=17%  Similarity=0.160  Sum_probs=143.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      .+++|++|||||+|+||+++++.|+++|++|+++.|+..+ ....   ......++.++.+|++| .+++.+++..    
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~   80 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD-AESVERAVDEAKAE   80 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999888887653 2211   11134578899999999 7766665542    


Q ss_pred             --CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|+||||||.....        ++...+++|+.++.++++++.+    .+.++||++||...+...           
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~-----------  149 (248)
T PRK05557         81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN-----------  149 (248)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC-----------
Confidence              389999999864321        2344577999999999988854    345789999997432111           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHhc
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                       .....|..+|.+.+.+++       ..++++++++||.+.++........    .........+.+++|+|+++..++.
T Consensus       150 -~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~  228 (248)
T PRK05557        150 -PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPEDVKEAILAQIPLGRLGQPEEIASAVAFLAS  228 (248)
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC
Confidence             113557788887775543       3589999999999987653321100    0001112346799999999976665


Q ss_pred             C--CCCCCcEEEeec
Q 022216          270 H--PESSYKVVEIIS  282 (301)
Q Consensus       270 ~--~~~~~~~~~v~~  282 (301)
                      .  ....++.+++.+
T Consensus       229 ~~~~~~~g~~~~i~~  243 (248)
T PRK05557        229 DEAAYITGQTLHVNG  243 (248)
T ss_pred             cccCCccccEEEecC
Confidence            4  234567788765

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.1e-22  Score=176.66  Aligned_cols=205  Identities=15%  Similarity=0.091  Sum_probs=138.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC---------chhhhccc---cCCCCeEEEEccCCCChHhHHHH
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL---------DKAKTTLS---KDNPSLQIVKADVTEGSAKLSEA  131 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~---------~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~  131 (301)
                      +++|++|||||+++||++++++|+++|++|++++|+.         +..++...   ....++.++.+|++| .+++.+.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD-WDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC-HHHHHHH
Confidence            4689999999999999999999999999999988765         33332221   124567889999999 6665554


Q ss_pred             hcC------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC------CCEEEEeccccccc
Q 022216          132 IGD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG------VNRFILISSILVNG  187 (301)
Q Consensus       132 ~~~------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~------~~~iV~~SS~~~~~  187 (301)
                      +..      ++|++|||||+...        ++|+.++++|+.+++++++++..    ..      .++||++||.+.+.
T Consensus        83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~  162 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ  162 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence            421      49999999997432        34667789999999999888742    11      25899999986432


Q ss_pred             ccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--ccccccccCCCCHH
Q 022216          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--ETEDTLYEGTISRD  258 (301)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--~~~~~~~~~~v~~~  258 (301)
                      ..            ..+..|+.+|.+.+.+.+       ..||+++.|.|| +.+++.......  ............++
T Consensus       163 ~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~~~~~~~~~~~~~~~~~~~~pe  229 (286)
T PRK07791        163 GS------------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTETVFAEMMAKPEEGEFDAMAPE  229 (286)
T ss_pred             CC------------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcchhhHHHHHhcCcccccCCCCHH
Confidence            11            124568888888876543       368999999999 666653221100  00000001256899


Q ss_pred             HHHHHHHHHhcCC--CCCCcEEEeec
Q 022216          259 QVAEVAVEALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       259 Dva~~~~~~l~~~--~~~~~~~~v~~  282 (301)
                      |+|++++.++...  ...++.+.+.+
T Consensus       230 dva~~~~~L~s~~~~~itG~~i~vdg  255 (286)
T PRK07791        230 NVSPLVVWLGSAESRDVTGKVFEVEG  255 (286)
T ss_pred             HHHHHHHHHhCchhcCCCCcEEEEcC
Confidence            9999997665432  23455555443

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.89  E-value=5.8e-22  Score=171.29  Aligned_cols=204  Identities=15%  Similarity=0.130  Sum_probs=141.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----C-CCCeEEEEccCCCChHhHHHHhcC------
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----D-NPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +|+||||||+|+||++++++|+++|++|++++|+....++....    . ..++.++.+|++| .+++..++.+      
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS-EQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999987655443211    1 2468899999999 6665554432      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEeccccc-ccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILV-NGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~-~~~~~~~~~~~~~~~  200 (301)
                      ++|+||||||....        +++...+++|+.+++++++++.+    .+ .++||++||... ++.            
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------  148 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------  148 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC------------
Confidence            39999999986432        23456679999999988888743    34 369999999652 211            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee--------ec--------cccccccCCCCH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII--------ME--------TEDTLYEGTISR  257 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~--------~~--------~~~~~~~~~v~~  257 (301)
                       .....|+.+|.+.+.+.+       ..|++++.|+||.++++.......        ..        ........++++
T Consensus       149 -~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (259)
T PRK12384        149 -KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLKRGCDY  227 (259)
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCcccCCCCH
Confidence             113568889998765542       478999999999876543211110        00        001122357899


Q ss_pred             HHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          258 DQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       258 ~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +|++++++.++....  ..++++++.++
T Consensus       228 ~dv~~~~~~l~~~~~~~~~G~~~~v~~g  255 (259)
T PRK12384        228 QDVLNMLLFYASPKASYCTGQSINVTGG  255 (259)
T ss_pred             HHHHHHHHHHcCcccccccCceEEEcCC
Confidence            999999976654332  34677888774

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.1e-21  Score=166.82  Aligned_cols=196  Identities=18%  Similarity=0.162  Sum_probs=140.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-----CCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-----DSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d~V  139 (301)
                      .+|++|||||+|+||++++++|+++|++|+++.|+..+.        ....++.+|++| .+++.+.+..     ++|+|
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~d~v   72 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------FPGELFACDLAD-IEQTAATLAQINEIHPVDAI   72 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------cCceEEEeeCCC-HHHHHHHHHHHHHhCCCcEE
Confidence            468999999999999999999999999999999986541        122578999999 7766665542     38999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |||||....        +++...+++|+.++.++.+++    ++.+.++||++||...|+..             ....|
T Consensus        73 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------~~~~Y  139 (234)
T PRK07577         73 VNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL-------------DRTSY  139 (234)
T ss_pred             EECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC-------------CchHH
Confidence            999997432        234456789999988887776    44566899999998755321             13568


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc-------cccccCCCCHHHHHHHHHHHhcCCC-
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE-------DTLYEGTISRDQVAEVAVEALLHPE-  272 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~-------~~~~~~~v~~~Dva~~~~~~l~~~~-  272 (301)
                      ..+|.+.+.+.+       +.|+++++|+||.+.++...........       .........++|+|++++.++..+. 
T Consensus       140 ~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~  219 (234)
T PRK07577        140 SAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPMRRLGTPEEVAAAIAFLLSDDAG  219 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCCCCCCcCHHHHHHHHHHHhCcccC
Confidence            899988876553       3599999999999998864321110000       0111123579999999988876543 


Q ss_pred             -CCCcEEEeec
Q 022216          273 -SSYKVVEIIS  282 (301)
Q Consensus       273 -~~~~~~~v~~  282 (301)
                       ..++.+.+.+
T Consensus       220 ~~~g~~~~~~g  230 (234)
T PRK07577        220 FITGQVLGVDG  230 (234)
T ss_pred             CccceEEEecC
Confidence             3456666654

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.88  E-value=4e-22  Score=172.27  Aligned_cols=194  Identities=14%  Similarity=0.164  Sum_probs=134.2

Q ss_pred             cccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCC---chhhhccccC-CCCeEEEEccCCCChHhHHHHhcC--
Q 022216           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDL---DKAKTTLSKD-NPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~---~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      ++++|+++||||+  ++||++++++|+++|++|++..|+.   +.++++..+. ..++.++++|++| .+++.+.+..  
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~   82 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS-DEEITACFETIK   82 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHHHH
Confidence            4578999999997  8999999999999999999887653   2333332222 3568889999999 6665554431  


Q ss_pred             ----CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCc
Q 022216          135 ----DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                          ++|++|||||+...            ++|...+++|+.+.+.+++++.+.  ..++||++||....   .+     
T Consensus        83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~---~~-----  154 (257)
T PRK08594         83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE---RV-----  154 (257)
T ss_pred             HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc---cC-----
Confidence                49999999996421            123456789999999888887542  23699999998532   11     


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----c--cccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----E--TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~--~~~~~~~~~v~~~Dva~~  263 (301)
                          ...+..|..+|.+.+.+.+       .+||+++.|.||.+.+++.......    .  ........+..++|+|++
T Consensus       155 ----~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~  230 (257)
T PRK08594        155 ----VQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAPLRRTTTQEEVGDT  230 (257)
T ss_pred             ----CCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCCccccCCHHHHHHH
Confidence                1124568889998886553       3689999999999998753211000    0  001112235789999999


Q ss_pred             HHHHhc
Q 022216          264 AVEALL  269 (301)
Q Consensus       264 ~~~~l~  269 (301)
                      ++.++.
T Consensus       231 ~~~l~s  236 (257)
T PRK08594        231 AAFLFS  236 (257)
T ss_pred             HHHHcC
Confidence            966554

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.88  E-value=4.1e-22  Score=172.41  Aligned_cols=193  Identities=19%  Similarity=0.133  Sum_probs=139.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC-CCCeEEEEccCCCChHhHHHHhcC-------CCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD-NPSLQIVKADVTEGSAKLSEAIGD-------DSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-------~~d  137 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+.+..+++.... ..++.++.+|++| .+++.+.+.+       ++|
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~~id   79 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTD-RAAWDAALADFAAATGGRLD   79 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCC
Confidence            378999999999999999999999999999999987766554321 3578999999999 6666655431       489


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +||||||....        ++++.++++|+.++.++++++.    +.+.++||++||...+...            ....
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~  147 (260)
T PRK08267         80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQ------------PGLA  147 (260)
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCC------------CCch
Confidence            99999997542        2345678999999999988874    3445799999997532111            1135


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee--eccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII--METEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .|+.+|...+.+.+       ..++++++|+||.+.+++......  ...........+.++|+|++++.++..+
T Consensus       148 ~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~  222 (260)
T PRK08267        148 VYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGSTKRLGVRLTPEDVAEAVWAAVQHP  222 (260)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccchhhhhhHhhccCCCCHHHHHHHHHHHHhCC
Confidence            67888888876553       358999999999998876443100  0000111123478899999999888654

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.88  E-value=6.3e-22  Score=171.46  Aligned_cols=205  Identities=18%  Similarity=0.206  Sum_probs=135.9

Q ss_pred             ccCCeEEEEcC--CchHHHHHHHHHHHCCCeEEEEEeCCc---hhhhccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGa--tG~iG~~~~~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++|++|||||  +++||++++++|+++|++|++..|+..   ..+++.. .......+++|++| .+++.+.+..    
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   81 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAA-ELDSELVFRCDVAS-DDEINQVFADLGKH   81 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHh-ccCCceEEECCCCC-HHHHHHHHHHHHHH
Confidence            56899999997  679999999999999999998766532   2222222 11235678999999 6666555432    


Q ss_pred             --CCCEEEEccCCCCC-------------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCc
Q 022216          135 --DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-------------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                        ++|++|||||+...             ++|+..+++|+.+.+.+++++..   .+.++||++||...+.   +.    
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~---~~----  154 (261)
T PRK08690         82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR---AI----  154 (261)
T ss_pred             hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc---CC----
Confidence              49999999997532             12344578999999888887632   2236899999976321   11    


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----e-c-cccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----M-E-TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~-~-~~~~~~~~~v~~~Dva~~  263 (301)
                           ..+..|..+|.+.+.+.+       .+||+++.|.||.+.+++......    . . ........+..++|+|++
T Consensus       155 -----~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~  229 (261)
T PRK08690        155 -----PNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLRRNVTIEEVGNT  229 (261)
T ss_pred             -----CCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCCCCCCCHHHHHHH
Confidence                 124568888988876543       468999999999999985322100    0 0 011122346789999999


Q ss_pred             HHHHhcCCCCCCcEEEeecC
Q 022216          264 AVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       264 ~~~~l~~~~~~~~~~~v~~~  283 (301)
                      ++.++. +...+.+..+...
T Consensus       230 v~~l~s-~~~~~~tG~~i~v  248 (261)
T PRK08690        230 AAFLLS-DLSSGITGEITYV  248 (261)
T ss_pred             HHHHhC-cccCCcceeEEEE
Confidence            966654 3333333333333

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.88  E-value=4.3e-22  Score=171.80  Aligned_cols=194  Identities=18%  Similarity=0.220  Sum_probs=139.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +|++|||||+|+||++++++|+++|++|+++.|++....++..   ....++.++.+|++| .+++.+++.+++|+||||
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD-AIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC-HHHHHHHhcCCCCEEEEC
Confidence            4789999999999999999999999999999998765443221   133468899999999 788888877349999999


Q ss_pred             cCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHH
Q 022216          143 TGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (301)
Q Consensus       143 Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~s  210 (301)
                      ||....        ++++..+++|+.++.++.+++    ++.+.++||++||...+...            .....|+.+
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~------------~~~~~Y~~s  148 (257)
T PRK09291         81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITG------------PFTGAYCAS  148 (257)
T ss_pred             CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCC------------CCcchhHHH
Confidence            996532        124456788999987776654    45566899999997533211            123568899


Q ss_pred             HHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----e--c-------cccccccCCCCHHHHHHHHHHHhcC
Q 022216          211 KLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----M--E-------TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       211 K~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~--~-------~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      |.+.|.+.+       ..|+++++|+||++.++.......    .  .       .......++++++|+++.++.++..
T Consensus       149 K~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  228 (257)
T PRK09291        149 KHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMIDAMVEVIPA  228 (257)
T ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHHHHHHHhcC
Confidence            999886543       369999999999988764321100    0  0       0011123457899999999888876


Q ss_pred             CC
Q 022216          271 PE  272 (301)
Q Consensus       271 ~~  272 (301)
                      +.
T Consensus       229 ~~  230 (257)
T PRK09291        229 DT  230 (257)
T ss_pred             CC
Confidence            64

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.88  E-value=4.2e-22  Score=173.53  Aligned_cols=193  Identities=14%  Similarity=0.148  Sum_probs=134.3

Q ss_pred             cccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCC---chhhhccccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDL---DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++|++|||||+  ++||++++++|+++|++|++..|+.   +..+++..+. .....+++|++| .+++.+.+..   
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~-~~~~~~~~Dl~~-~~~v~~~~~~~~~   84 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL-GAFVAGHCDVTD-EASIDAVFETLEK   84 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc-CCceEEecCCCC-HHHHHHHHHHHHH
Confidence            3468999999997  8999999999999999999887763   2222222211 235678999999 6666655432   


Q ss_pred             ---CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 ---DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                         ++|++|||||+...            ++|+..+++|+.+++.+++++.+.  +.++||++||.+..   .+      
T Consensus        85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~---~~------  155 (272)
T PRK08159         85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE---KV------  155 (272)
T ss_pred             hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc---cC------
Confidence               49999999996421            246678899999999999988543  23699999987532   11      


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----ecc--ccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----MET--EDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~~~--~~~~~~~~v~~~Dva~~~  264 (301)
                         ...+..|+.+|.+.+.+.+       ..||+++.|.||.+.+++......    ...  .......+..++|+|+++
T Consensus       156 ---~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~~  232 (272)
T PRK08159        156 ---MPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIEEVGDSA  232 (272)
T ss_pred             ---CCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCCcccccCCHHHHHHHH
Confidence               1224668899998876553       368999999999999875321100    000  011122356899999999


Q ss_pred             HHHhc
Q 022216          265 VEALL  269 (301)
Q Consensus       265 ~~~l~  269 (301)
                      +.++.
T Consensus       233 ~~L~s  237 (272)
T PRK08159        233 LYLLS  237 (272)
T ss_pred             HHHhC
Confidence            66664

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=7.6e-22  Score=168.07  Aligned_cols=199  Identities=16%  Similarity=0.141  Sum_probs=140.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCCh-HhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS-AKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|+++||||+|+||++++++|+++|++|++++|+....      ...++.++.+|+++ . +.+.+.++. +|+||||
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~~~~~~~~~~D~~~-~~~~~~~~~~~-id~lv~~   74 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------LSGNFHFLQLDLSD-DLEPLFDWVPS-VDILCNT   74 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------cCCcEEEEECChHH-HHHHHHHhhCC-CCEEEEC
Confidence            4689999999999999999999999999999999875432      12468899999998 5 555555666 9999999


Q ss_pred             cCCCCC---------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          143 TGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       143 Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      ||....         ++++..+++|+.++.++++++..    .+.++||++||...+...            .....|+.
T Consensus        75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~Y~~  142 (235)
T PRK06550         75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG------------GGGAAYTA  142 (235)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------------CCCcccHH
Confidence            995321         23456789999999999998843    345689999998644211            11345777


Q ss_pred             HHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhcCCC--CC
Q 022216          210 AKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPE--SS  274 (301)
Q Consensus       210 sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~  274 (301)
                      +|...+.+.+       ..|+++++|+||++.++.........      ........+..++|+|++++.++..+.  ..
T Consensus       143 sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~s~~~~~~~  222 (235)
T PRK06550        143 SKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETPIKRWAEPEEVAELTLFLASGKADYMQ  222 (235)
T ss_pred             HHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCCcCCCCCHHHHHHHHHHHcChhhccCC
Confidence            8887765543       35899999999999988643221100      001112336789999999976664322  24


Q ss_pred             CcEEEeec
Q 022216          275 YKVVEIIS  282 (301)
Q Consensus       275 ~~~~~v~~  282 (301)
                      ++++.+.+
T Consensus       223 g~~~~~~g  230 (235)
T PRK06550        223 GTIVPIDG  230 (235)
T ss_pred             CcEEEECC
Confidence            44555443

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.88  E-value=2.8e-22  Score=173.55  Aligned_cols=207  Identities=13%  Similarity=0.081  Sum_probs=138.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhcc----ccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTL----SKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ++++|++|||||+++||++++++|+++|++|+++.|+. +..+...    .....++.++.+|++| .+++.+.+..   
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   83 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE-PETYKELFKKIDE   83 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHH
Confidence            46789999999999999999999999999998876643 3332221    1123578899999999 6666555432   


Q ss_pred             ---CCCEEEEccCCCCC--------------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCC
Q 022216          135 ---DSEAVVCATGFQPG--------------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQI  193 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~  193 (301)
                         ++|+||||||....              +++...+++|+.+.+.+.+.+.    +.+.++||++||...+.   .  
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---~--  158 (260)
T PRK08416         84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV---Y--  158 (260)
T ss_pred             hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc---C--
Confidence               39999999985310              2344567889888877766653    33456999999975221   1  


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHH
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQV  260 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dv  260 (301)
                             ...+..|+.+|.+.+.+.+       ..|++++.|+||++.+++........      ........+.+++|+
T Consensus       159 -------~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~v  231 (260)
T PRK08416        159 -------IENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPLNRMGQPEDL  231 (260)
T ss_pred             -------CCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCCCCCCCHHHH
Confidence                   1123568889998886653       35899999999999998633211000      000112236789999


Q ss_pred             HHHHHHHhcCCC--CCCcEEEeec
Q 022216          261 AEVAVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       261 a~~~~~~l~~~~--~~~~~~~v~~  282 (301)
                      |++++.++..+.  ..++++.+.+
T Consensus       232 a~~~~~l~~~~~~~~~G~~i~vdg  255 (260)
T PRK08416        232 AGACLFLCSEKASWLTGQTIVVDG  255 (260)
T ss_pred             HHHHHHHcChhhhcccCcEEEEcC
Confidence            999976654322  3445555543

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.88  E-value=8.9e-22  Score=168.60  Aligned_cols=206  Identities=19%  Similarity=0.203  Sum_probs=143.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++++++||||+|+||+++++.|+++|++|+++.|+... ..+.   ......++.++.+|++| .+++.+.+..     
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~   81 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVAD-AAAVTRLFDAAETAF   81 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            457999999999999999999999999999887776432 1111   11134578899999999 7666666542     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                       ++|+||||||....        ++++.++++|+.++.++++++.+.  ..++||++||...+..            ...
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~  149 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALP------------LPG  149 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCC------------CCC
Confidence             39999999996432        234566789999999999988653  2368999999754321            122


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHHhcCC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ...|+.+|.+.+.+++       ..++++++|+||++.+++..+.....     ........+.+++|+|++++.++..+
T Consensus       150 ~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~  229 (245)
T PRK12937        150 YGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLAPLERLGTPEEIAAAVAFLAGPD  229 (245)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcc
Confidence            4678899999887664       25899999999999988632211000     00111224568999999987776543


Q ss_pred             C--CCCcEEEeec
Q 022216          272 E--SSYKVVEIIS  282 (301)
Q Consensus       272 ~--~~~~~~~v~~  282 (301)
                      .  ..++.+++.+
T Consensus       230 ~~~~~g~~~~~~~  242 (245)
T PRK12937        230 GAWVNGQVLRVNG  242 (245)
T ss_pred             ccCccccEEEeCC
Confidence            2  2356666654

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.3e-21  Score=169.02  Aligned_cols=207  Identities=19%  Similarity=0.230  Sum_probs=144.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ..+++|+++||||+|+||+++++.|+++|++|+++.|+.++++++..   ....++.++.+|+++ .+++.+.+.+    
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   83 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD-YQSIKAAVAHAETE   83 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHh
Confidence            34678999999999999999999999999999999998876554332   123568899999999 6666665542    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC--------CCEEEEecccccccccCCC
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG--------VNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~--------~~~iV~~SS~~~~~~~~~~  192 (301)
                        ++|+||||||....        +++..++++|+.++.++++++..    ..        .+++|++||...+..    
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----  159 (258)
T PRK06949         84 AGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV----  159 (258)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC----
Confidence              39999999996432        23556789999999999988742    21        258999999864421    


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc----cc-ccccCCCCHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET----ED-TLYEGTISRDQV  260 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~----~~-~~~~~~v~~~Dv  260 (301)
                              ......|+.+|.+.+.+.+       .+++++++|+||++.+++.........    .. .....+..++|+
T Consensus       160 --------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  231 (258)
T PRK06949        160 --------LPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQGQKLVSMLPRKRVGKPEDL  231 (258)
T ss_pred             --------CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHHHHHHhcCCCCCCcCHHHH
Confidence                    1124568888888776553       258999999999999987543211100    00 011235678999


Q ss_pred             HHHHHHHhcCCC--CCCcEEEee
Q 022216          261 AEVAVEALLHPE--SSYKVVEII  281 (301)
Q Consensus       261 a~~~~~~l~~~~--~~~~~~~v~  281 (301)
                      +++++.++....  ..+....+.
T Consensus       232 ~~~~~~l~~~~~~~~~G~~i~~d  254 (258)
T PRK06949        232 DGLLLLLAADESQFINGAIISAD  254 (258)
T ss_pred             HHHHHHHhChhhcCCCCcEEEeC
Confidence            999966654322  344444443

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.88  E-value=7.7e-22  Score=168.24  Aligned_cols=202  Identities=15%  Similarity=0.105  Sum_probs=139.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~V  139 (301)
                      +|++|||||+|+||++++++|+++|++|++++|++++..+...  ..++.++.+|++| .+++.+.+..      ++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLR--QAGAQCIQADFST-NAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHH--HcCCEEEEcCCCC-HHHHHHHHHHHHhhCCCccEE
Confidence            4799999999999999999999999999999998765433322  1347889999999 6555544422      39999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC--CCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG--VNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      |||||....        ++++..+++|+.+++.+++++.+    .+  .++||++||.....   +         ...+.
T Consensus        79 v~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~---~---------~~~~~  146 (236)
T PRK06483         79 IHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK---G---------SDKHI  146 (236)
T ss_pred             EECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc---C---------CCCCc
Confidence            999996321        23556789999999988877743    23  46899999975321   1         11246


Q ss_pred             HHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCc-ee-eccccccccCCCCHHHHHHHHHHHhcCCCCCCcE
Q 022216          206 LTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGN-II-METEDTLYEGTISRDQVAEVAVEALLHPESSYKV  277 (301)
Q Consensus       206 ~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~-~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~  277 (301)
                      .|+.+|.+.+.+.+.      .+++++.|+||++.++..... .. ..........+..++|+|+++..++......+++
T Consensus       147 ~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~G~~  226 (236)
T PRK06483        147 AYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDDAAYRQKALAKSLLKIEPGEEEIIDLVDYLLTSCYVTGRS  226 (236)
T ss_pred             cHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCCHHHHHHHhccCccccCCCHHHHHHHHHHHhcCCCcCCcE
Confidence            789999999877642      369999999999876532111 10 0000111223467999999997777544455666


Q ss_pred             EEeec
Q 022216          278 VEIIS  282 (301)
Q Consensus       278 ~~v~~  282 (301)
                      +.+.+
T Consensus       227 i~vdg  231 (236)
T PRK06483        227 LPVDG  231 (236)
T ss_pred             EEeCc
Confidence            66654

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.88  E-value=9.2e-22  Score=171.22  Aligned_cols=192  Identities=14%  Similarity=0.167  Sum_probs=139.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      |+|+||||+|+||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+.+..      ++|
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD-YSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence            579999999999999999999999999999998776554322   134578899999999 6666665531      399


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +||||||....        ++++.++++|+.+..++.+++    ++.+.++||++||...+...            ....
T Consensus        80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------~~~~  147 (270)
T PRK05650         80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQG------------PAMS  147 (270)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCC------------CCch
Confidence            99999996542        234446789999988877775    55566899999998654321            1246


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc------cccccCCCCHHHHHHHHHHHhcCC
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE------DTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~------~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .|..+|.+.+.+.+       ..|+++++|+||.+.++...........      ......+++++|+|+.++.++..+
T Consensus       148 ~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~l~~~  226 (270)
T PRK05650        148 SYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEKSPITAADIADYIYQQVAKG  226 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC
Confidence            78889988765442       3589999999999999864322110000      001124689999999999999864

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=1.4e-21  Score=173.17  Aligned_cols=224  Identities=17%  Similarity=0.081  Sum_probs=150.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhcc---ccCCCCeEEEEccCCCChHhHHHHh-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTL---SKDNPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      .++++|++|||||+|+||++++++|+++|++|++.++... ..++..   .....++.++.+|++| .+++.+.+     
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d-~~~~~~~~~~~~~   86 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQ-RATADELVATAVG   86 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999887543 222221   1134578899999999 65555544     


Q ss_pred             -cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----c-------CCCEEEEecccccccccCCC
Q 022216          133 -GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----R-------GVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       133 -~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~-------~~~~iV~~SS~~~~~~~~~~  192 (301)
                       +. +|+||||||....        ++|...+++|+.+++++++++..    .       ..++||++||...+...   
T Consensus        87 ~g~-iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---  162 (306)
T PRK07792         87 LGG-LDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP---  162 (306)
T ss_pred             hCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC---
Confidence             45 9999999997542        24566789999999999998732    1       12589999998643211   


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecccc-ccccCCCCHHHHHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETED-TLYEGTISRDQVAEVA  264 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~-~~~~~~v~~~Dva~~~  264 (301)
                               .....|+.+|.+.+.+.+       .+||+++.|.|| +.+++........... .....+++++|+|.++
T Consensus       163 ---------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg-~~t~~~~~~~~~~~~~~~~~~~~~~pe~va~~v  232 (306)
T PRK07792        163 ---------VGQANYGAAKAGITALTLSAARALGRYGVRANAICPR-ARTAMTADVFGDAPDVEAGGIDPLSPEHVVPLV  232 (306)
T ss_pred             ---------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC-CCCchhhhhccccchhhhhccCCCCHHHHHHHH
Confidence                     113568889998886543       368999999999 4555432211100000 1112356899999998


Q ss_pred             HHHhcCC--CCCCcEEEeecCC---------------CCCCcCHHHHHHHhhc
Q 022216          265 VEALLHP--ESSYKVVEIISRV---------------DAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       265 ~~~l~~~--~~~~~~~~v~~~~---------------~~~~~s~~e~~~~i~~  300 (301)
                      ..++...  ...++++.+.++.               ++..++.+|+.+.+.+
T Consensus       233 ~~L~s~~~~~~tG~~~~v~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (306)
T PRK07792        233 QFLASPAAAEVNGQVFIVYGPMVTLVAAPVVERRFDADGDAWDPGELSATLRD  285 (306)
T ss_pred             HHHcCccccCCCCCEEEEcCCeEEEEeeeeecceecCCCCCCCHHHHHHHHHH
Confidence            6555432  2345566654321               1256788888877653

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=1.2e-21  Score=169.19  Aligned_cols=207  Identities=15%  Similarity=0.098  Sum_probs=141.8

Q ss_pred             cccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCc-----------hh---hhccccCCCCeEEEEccCCCChH
Q 022216           63 SVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLD-----------KA---KTTLSKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        63 ~~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~-----------~~---~~~~~~~~~~~~~~~~Dl~~~~~  126 (301)
                      ++++|+||||||+|  +||.+++++|+++|++|+++.|++.           ..   .........++.++.+|++| .+
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~   80 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQ-PY   80 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCC-HH
Confidence            34678999999995  8999999999999999999988721           11   11111123568999999999 66


Q ss_pred             hHHHHhcC------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----CCCEEEEecccccccc
Q 022216          127 KLSEAIGD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----GVNRFILISSILVNGA  188 (301)
Q Consensus       127 ~~~~~~~~------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~~~~iV~~SS~~~~~~  188 (301)
                      ++..++..      ++|+||||||....        ++++..+++|+.++.++++++.+.    +.++||++||...+..
T Consensus        81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~  160 (256)
T PRK12748         81 APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGP  160 (256)
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCC
Confidence            55544432      39999999986432        124456789999999999998532    3469999999865432


Q ss_pred             cCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc-cccccCCCCHHHH
Q 022216          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE-DTLYEGTISRDQV  260 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~-~~~~~~~v~~~Dv  260 (301)
                      .            .....|..+|.+.+.+++       ..+++++.|+||.+.++........... ......+..++|+
T Consensus       161 ~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (256)
T PRK12748        161 M------------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITEELKHHLVPKFPQGRVGEPVDA  228 (256)
T ss_pred             C------------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCChhHHHhhhccCCCCCCcCHHHH
Confidence            1            124578999999987654       2589999999999988754322111000 1111234678999


Q ss_pred             HHHHHHHhcCCC--CCCcEEEeec
Q 022216          261 AEVAVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       261 a~~~~~~l~~~~--~~~~~~~v~~  282 (301)
                      |+++..++....  ..++++++.+
T Consensus       229 a~~~~~l~~~~~~~~~g~~~~~d~  252 (256)
T PRK12748        229 ARLIAFLVSEEAKWITGQVIHSEG  252 (256)
T ss_pred             HHHHHHHhCcccccccCCEEEecC
Confidence            999865554322  2356677654

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.88  E-value=3.9e-22  Score=172.63  Aligned_cols=193  Identities=12%  Similarity=0.123  Sum_probs=131.4

Q ss_pred             cccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCc---hhhhccccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++|+++||||++  +||++++++|+++|++|++..|+..   ..+++..+. ....++++|++| .+++.+.+..   
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~-g~~~~~~~Dv~~-~~~v~~~~~~~~~   82 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEI-GCNFVSELDVTN-PKSISNLFDDIKE   82 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhc-CCceEEEccCCC-HHHHHHHHHHHHH
Confidence            34689999999997  8999999999999999998887632   122222111 223467899999 6665555432   


Q ss_pred             ---CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 ---DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                         ++|++|||||....            ++|+..+++|+.+.+.+++++...  ..++||++||.....   +      
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---~------  153 (260)
T PRK06603         83 KWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK---V------  153 (260)
T ss_pred             HcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc---C------
Confidence               49999999986421            245567899999999999887432  226999999975321   1      


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----ec-cccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----ME-TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~-~~~~~~~~~v~~~Dva~~~  264 (301)
                         ...+..|+.+|.+.+.+.+       .+||+++.|.||.+.+++......     .. ........+..++|+|+++
T Consensus       154 ---~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~  230 (260)
T PRK06603        154 ---IPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKRNTTQEDVGGAA  230 (260)
T ss_pred             ---CCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence               1124568888888876543       468999999999999875321000     00 0011123357899999999


Q ss_pred             HHHhc
Q 022216          265 VEALL  269 (301)
Q Consensus       265 ~~~l~  269 (301)
                      +.++.
T Consensus       231 ~~L~s  235 (260)
T PRK06603        231 VYLFS  235 (260)
T ss_pred             HHHhC
Confidence            66554

>PRK08264 short chain dehydrogenase; Validated

Probab=99.88  E-value=1.5e-21  Score=166.56  Aligned_cols=183  Identities=26%  Similarity=0.316  Sum_probs=141.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAV  139 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~V  139 (301)
                      ++.+++++||||+|+||+++++.|+++|+ +|++++|+.++..+    ...++.++.+|++| .+++.+.+..  ++|+|
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~-~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTD-PASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCC-HHHHHHHHHhcCCCCEE
Confidence            34678999999999999999999999999 99999998776543    23578999999999 7777776654  48999


Q ss_pred             EEccCC-CCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          140 VCATGF-QPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       140 i~~Ag~-~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||+||. ...        +++...+++|+.++.++++++.    +.+.++||++||...+...            .....
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~------------~~~~~  145 (238)
T PRK08264         78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNF------------PNLGT  145 (238)
T ss_pred             EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCC------------CCchH
Confidence            999997 221        2344567899999999999874    3456789999998654321            22467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      |+.+|.+.+.+.+       ..++++++++||.+.+++....         ....++++|+++.++..+..+
T Consensus       146 y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~~---------~~~~~~~~~~a~~~~~~~~~~  208 (238)
T PRK08264        146 YSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAGL---------DAPKASPADVARQILDALEAG  208 (238)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccccccC---------CcCCCCHHHHHHHHHHHHhCC
Confidence            8999999986553       2589999999999988763321         112578899999998888754

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.88  E-value=1e-21  Score=191.37  Aligned_cols=207  Identities=15%  Similarity=0.144  Sum_probs=148.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      ..|+||||||+||||+++++.|.++|++|...                     .+|++| .+.+.+.+.. ++|+|||||
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------~~~l~d-~~~v~~~i~~~~pd~Vih~A  436 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------KGRLED-RSSLLADIRNVKPTHVFNAA  436 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------cccccc-HHHHHHHHHhhCCCEEEECC
Confidence            45799999999999999999999999987311                     146778 6778777764 599999999


Q ss_pred             CCCCC-------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC------CCCCCcchhhcchhhHHHHH
Q 022216          144 GFQPG-------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM------GQILNPAYIFLNVFGLTLIA  210 (301)
Q Consensus       144 g~~~~-------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~------~~~~~~~~~~~~~~~~y~~s  210 (301)
                      +....       .++...+++|+.|+.+++++|++.++ ++|++||.++|+...      +.+..++..+..+.+.|+.+
T Consensus       437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Yg~s  515 (668)
T PLN02260        437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFYSKT  515 (668)
T ss_pred             cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCCCCCCCChhhHH
Confidence            86531       24556789999999999999999998 577888888886421      22444444444445789999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCcccCCCCCC--cee---eccc--cccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          211 KLQAEQYIRKSGINYTIIRPGGLRNEPPTG--NII---METE--DTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       211 K~~~e~~~~~~~i~~~~irpg~v~~~~~~~--~~~---~~~~--~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      |.++|++++.+ .++.++|..++++....+  .+.   ....  -....+....+|+..+++.++..+  .+++||++++
T Consensus       516 K~~~E~~~~~~-~~~~~~r~~~~~~~~~~~~~nfv~~~~~~~~~~~vp~~~~~~~~~~~~~~~l~~~~--~~giyni~~~  592 (668)
T PLN02260        516 KAMVEELLREY-DNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRN--LRGIWNFTNP  592 (668)
T ss_pred             HHHHHHHHHhh-hhheEEEEEEecccCCCCccHHHHHHhccceeeccCCCceehhhHHHHHHHHHHhC--CCceEEecCC
Confidence            99999998766 366777777777532111  110   0000  111234567788888877777643  2579999996


Q ss_pred             CCCCCcCHHHHHHHhhc
Q 022216          284 VDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       284 ~~~~~~s~~e~~~~i~~  300 (301)
                         ..+||.|+++.|.+
T Consensus       593 ---~~~s~~e~a~~i~~  606 (668)
T PLN02260        593 ---GVVSHNEILEMYKD  606 (668)
T ss_pred             ---CcCcHHHHHHHHHH
Confidence               78999999998865

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.88  E-value=5.2e-22  Score=168.54  Aligned_cols=201  Identities=14%  Similarity=0.113  Sum_probs=147.5

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC--CCCEEEEccCC
Q 022216           70 FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVCATGF  145 (301)
Q Consensus        70 lVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi~~Ag~  145 (301)
                      |||||+|+||++++++|+++|++|++++|+.+..+.....  ...+++++.+|++| .+++.+++..  ++|++|||+|.
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~id~li~~ag~   79 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITD-EAAVDAFFAEAGPFDHVVITAAD   79 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHhcCCCCEEEECCCC
Confidence            6999999999999999999999999999987665543221  13578899999999 7888877764  48999999986


Q ss_pred             CCC--------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          146 QPG--------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       146 ~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      ...        +++..++++|+.++.+++++....+.++||++||...+...            .+...|..+|.+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~------------~~~~~Y~~sK~a~~~~  147 (230)
T PRK07041         80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPS------------ASGVLQGAINAALEAL  147 (230)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCC------------CcchHHHHHHHHHHHH
Confidence            432        23556788999999999996665556899999998765321            2246788999999877


Q ss_pred             HHH-----cCCcEEEEecCcccCCCCCCceeec--------cccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          218 IRK-----SGINYTIIRPGGLRNEPPTGNIIME--------TEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       218 ~~~-----~~i~~~~irpg~v~~~~~~~~~~~~--------~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      .+.     .+++++.++||.+.+++........        ..........+++|+|++++.++.++...++++++.++
T Consensus       148 ~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gg  226 (230)
T PRK07041        148 ARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPARRVGQPEDVANAILFLAANGFTTGSTVLVDGG  226 (230)
T ss_pred             HHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCcCCcEEEeCCC
Confidence            653     3689999999999887532110000        00001112457899999998888765556778887764

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.8e-21  Score=168.01  Aligned_cols=204  Identities=15%  Similarity=0.123  Sum_probs=140.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +++++|+||||+|+||.+++++|+++|++|++++|+....++.....  ...++++|++| .+++.+.+..      ++|
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~--~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id   81 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV--GGLFVPTDVTD-EDAVNALFDTAAETYGSVD   81 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc--CCcEEEeeCCC-HHHHHHHHHHHHHHcCCCC
Confidence            56899999999999999999999999999999999876654433211  23678999999 7776666542      489


Q ss_pred             EEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccc-cccccCCCCCCcchhhcc
Q 022216          138 AVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSIL-VNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       138 ~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~-~~~~~~~~~~~~~~~~~~  202 (301)
                      +||||||....          ++++..+++|+.++.++++++.    +.+.+++|++||.. +++..            .
T Consensus        82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~------------~  149 (255)
T PRK06057         82 IAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA------------T  149 (255)
T ss_pred             EEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC------------C
Confidence            99999986421          1245667899999988888763    34557999999964 33321            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc-------cccccCCCCHHHHHHHHHHHh
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE-------DTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~-------~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ....|..+|.+.+.+.+       ..|+++++|+||++.++...........       ......+.+++|+|+++..++
T Consensus       150 ~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~  229 (255)
T PRK06057        150 SQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLVHVPMGRFAEPEEIAAAVAFLA  229 (255)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence            13457888876654432       3589999999999999864332111000       001124678999999986666


Q ss_pred             cCCC--CCCcEEEeec
Q 022216          269 LHPE--SSYKVVEIIS  282 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~  282 (301)
                      ....  ..++.+.+.+
T Consensus       230 ~~~~~~~~g~~~~~~~  245 (255)
T PRK06057        230 SDDASFITASTFLVDG  245 (255)
T ss_pred             CccccCccCcEEEECC
Confidence            4432  3355555544

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=8.4e-22  Score=166.86  Aligned_cols=194  Identities=18%  Similarity=0.219  Sum_probs=145.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC--CCeEEEEccCCCCh------HhHHHHhc
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGS------AKLSEAIG  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~------~~~~~~~~  133 (301)
                      .+.+|++||||||++|+|++++.+|+++|.++++.+.+.+..++......  ..+..+.+|++|.+      +.+++.++
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46679999999999999999999999999999998988876655332211  37999999999932      34445555


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      + +|++|||||+.+.        ++.+..+++|+.|.+...++.    .+.+-++||.++|.+.+-   +.+        
T Consensus       114 ~-V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~---g~~--------  181 (300)
T KOG1201|consen  114 D-VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLF---GPA--------  181 (300)
T ss_pred             C-ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhccc---CCc--------
Confidence            5 9999999998653        234567899999988887776    444568999999987432   211        


Q ss_pred             chhhHHHHHHHHHHHHH-------H---HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          202 NVFGLTLIAKLQAEQYI-------R---KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~-------~---~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                       ....|..||.++..+.       +   ..||+.+.+.|+.+.+.+..+    ....+.+.+.+.++.+|+.++.++..+
T Consensus       182 -gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~----~~~~~~l~P~L~p~~va~~Iv~ai~~n  256 (300)
T KOG1201|consen  182 -GLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG----ATPFPTLAPLLEPEYVAKRIVEAILTN  256 (300)
T ss_pred             -cchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC----CCCCccccCCCCHHHHHHHHHHHHHcC
Confidence             2355667777664332       1   257999999999999887766    222334457899999999999998776


Q ss_pred             C
Q 022216          272 E  272 (301)
Q Consensus       272 ~  272 (301)
                      +
T Consensus       257 ~  257 (300)
T KOG1201|consen  257 Q  257 (300)
T ss_pred             C
Confidence            5

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1e-21  Score=168.27  Aligned_cols=193  Identities=17%  Similarity=0.154  Sum_probs=138.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh--------cC--C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI--------GD--D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--------~~--~  135 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+..+..  ......++.++++|++| .+++.+.+        ..  +
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~--~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~   77 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL--AAAAGERLAEVELDLSD-AAAAAAWLAGDLLAAFVDGAS   77 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh--hhccCCeEEEEEeccCC-HHHHHHHHHHHHHHHhccCCC
Confidence            368999999999999999999999999999999865422  11134578899999999 66665532        21  4


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|++|||||....         ++++..+++|+.+...+++.+.    +.+.++||++||...+..            ..
T Consensus        78 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------~~  145 (243)
T PRK07023         78 RVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNA------------YA  145 (243)
T ss_pred             ceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCC------------CC
Confidence            8999999986432         2346778999999877766664    344579999999865421            12


Q ss_pred             hhhHHHHHHHHHHHHHH------HcCCcEEEEecCcccCCCCCCceeec----c------ccccccCCCCHHHHHHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR------KSGINYTIIRPGGLRNEPPTGNIIME----T------EDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~------~~~i~~~~irpg~v~~~~~~~~~~~~----~------~~~~~~~~v~~~Dva~~~~~  266 (301)
                      .+..|+.+|...|.+++      ..+++++.|+||.+.+++........    .      ........+.++|+|+.++.
T Consensus       146 ~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  225 (243)
T PRK07023        146 GWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTGMQATIRATDEERFPMRERFRELKASGALSTPEDAARRLIA  225 (243)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccHHHHHHHhcccccchHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence            35789999999998775      25899999999999887532100000    0      00001235789999998778


Q ss_pred             HhcCCCC
Q 022216          267 ALLHPES  273 (301)
Q Consensus       267 ~l~~~~~  273 (301)
                      +|.++..
T Consensus       226 ~l~~~~~  232 (243)
T PRK07023        226 YLLSDDF  232 (243)
T ss_pred             HHhcccc
Confidence            8887753

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.88  E-value=7e-22  Score=170.89  Aligned_cols=206  Identities=16%  Similarity=0.244  Sum_probs=144.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcC--CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD--DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~  136 (301)
                      .+++|+++|||++|+||+++++.|+++|++|++++|+.++.++...    ....++.++.+|++| .+++.+++..  ++
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~g~i   82 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSS-PEAREQLAAEAGDI   82 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHhCCC
Confidence            3568999999999999999999999999999999998776554322    123568899999999 7777665543  49


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |++|||||....        ++|...+++|+.+.+++++++    ++.+.++||++||....   .+         ...+
T Consensus        83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~---~~---------~~~~  150 (259)
T PRK06125         83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE---NP---------DADY  150 (259)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc---CC---------CCCc
Confidence            999999996432        245667899999999998887    33444689999987521   11         1224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce------eecc--------ccccccCCCCHHHHHHH
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI------IMET--------EDTLYEGTISRDQVAEV  263 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~------~~~~--------~~~~~~~~v~~~Dva~~  263 (301)
                      ..|..+|.+.+.+.+       ..|++++.|+||.+.++......      ....        .......+.+++|+|++
T Consensus       151 ~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~  230 (259)
T PRK06125        151 ICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLPLGRPATPEEVADL  230 (259)
T ss_pred             hHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCCcCCCcCHHHHHHH
Confidence            567888888876554       35899999999999987421100      0000        01112345689999999


Q ss_pred             HHHHhcCCC---CCCcEEEeec
Q 022216          264 AVEALLHPE---SSYKVVEIIS  282 (301)
Q Consensus       264 ~~~~l~~~~---~~~~~~~v~~  282 (301)
                      ++.++ ++.   ..+.++.+.+
T Consensus       231 ~~~l~-~~~~~~~~G~~i~vdg  251 (259)
T PRK06125        231 VAFLA-SPRSGYTSGTVVTVDG  251 (259)
T ss_pred             HHHHc-CchhccccCceEEecC
Confidence            86655 433   3444555543

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.88  E-value=9e-22  Score=168.79  Aligned_cols=206  Identities=17%  Similarity=0.154  Sum_probs=138.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      |++|+++||||+|+||++++++|+++|++|++..+ +.....+...   .....+..+.+|++| .+++.+.+.+     
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   79 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGD-WDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence            35799999999999999999999999999987543 3322222111   134567788999999 6666555431     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|+||||||....        ++++.++++|+.+++++.+++    ++.+.++||++||.....   +         .
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---~---------~  147 (246)
T PRK12938         80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK---G---------Q  147 (246)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC---C---------C
Confidence             39999999997432        245667899999988877766    345667999999975321   1         1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----eccccccccCCCCHHHHHHHHHHHhcC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----METEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ..+..|..+|.+.+.+.+       ..|++++.|+||++.++.......    ..........+.+++|+++++..++..
T Consensus       148 ~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~  227 (246)
T PRK12938        148 FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEIGSIVAWLASE  227 (246)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcChHHHHHHHhcCCccCCcCHHHHHHHHHHHcCc
Confidence            224678888987776543       368999999999999986432100    000011122356899999998655533


Q ss_pred             CC--CCCcEEEeec
Q 022216          271 PE--SSYKVVEIIS  282 (301)
Q Consensus       271 ~~--~~~~~~~v~~  282 (301)
                      +.  ..++++.+.+
T Consensus       228 ~~~~~~g~~~~~~~  241 (246)
T PRK12938        228 ESGFSTGADFSLNG  241 (246)
T ss_pred             ccCCccCcEEEECC
Confidence            22  3455555543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=1.8e-21  Score=167.39  Aligned_cols=206  Identities=16%  Similarity=0.122  Sum_probs=146.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      ++++++|||||+|+||+++++.|+++|++|++++|+..+.++...   ....++.++.+|++| .+++.+.+..      
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD-EEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999998765544322   124578889999999 6665544432      


Q ss_pred             CCCEEEEccCCCCC-----------------CCCCCceeeehHHHHHHHHHHH----Hc-CCCEEEEecccccccccCCC
Q 022216          135 DSEAVVCATGFQPG-----------------WDLFAPWKVDNFGTVNLVEACR----KR-GVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~-----------------~~~~~~~~~N~~g~~~l~~a~~----~~-~~~~iV~~SS~~~~~~~~~~  192 (301)
                      ++|+||||||....                 +++..++++|+.++.++++++.    +. ..++||++||...|+..   
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~---  158 (253)
T PRK08217         82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM---  158 (253)
T ss_pred             CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC---
Confidence            38999999995321                 1223456899999988877653    22 23579999998655321   


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec----cccccccCCCCHHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME----TEDTLYEGTISRDQVA  261 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~----~~~~~~~~~v~~~Dva  261 (301)
                                ....|..+|.+.+.+.+       ..+++++.++||.+.+++........    ........+.+++|+|
T Consensus       159 ----------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  228 (253)
T PRK08217        159 ----------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMIPVGRLGEPEEIA  228 (253)
T ss_pred             ----------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcCCcCCCcCHHHHH
Confidence                      23568899998886643       36899999999999988653211000    0011122356899999


Q ss_pred             HHHHHHhcCCCCCCcEEEeecC
Q 022216          262 EVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       262 ~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      +++..++.+....++++++.++
T Consensus       229 ~~~~~l~~~~~~~g~~~~~~gg  250 (253)
T PRK08217        229 HTVRFIIENDYVTGRVLEIDGG  250 (253)
T ss_pred             HHHHHHHcCCCcCCcEEEeCCC
Confidence            9998888665557788887764

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.88  E-value=8.2e-22  Score=170.74  Aligned_cols=193  Identities=18%  Similarity=0.266  Sum_probs=132.9

Q ss_pred             ccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCc---hhhhccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++|+++||||++  +||++++++|+++|++|++.+|+..   ..+++.. ......++.+|++| .+++.+.+..    
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   81 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAA-QLGSDIVLPCDVAE-DASIDAMFAELGKV   81 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHh-ccCCceEeecCCCC-HHHHHHHHHHHHhh
Confidence            5689999999985  9999999999999999998888631   1222221 22346788999999 7666655432    


Q ss_pred             --CCCEEEEccCCCCC-------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 --DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                        ++|++|||||+...             ++|+..+++|+.+.+.+.+++...  ..++||++||.+..   .+      
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~---~~------  152 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE---RA------  152 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC---CC------
Confidence              49999999996431             133456789999999998887432  23689999997522   11      


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----c--cccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----E--TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~--~~~~~~~~~v~~~Dva~~~  264 (301)
                         ...+..|+.+|.+.+.+.+       ..||+++.|.||.+.+++.......    .  ........+..++|+|+++
T Consensus       153 ---~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~  229 (262)
T PRK07984        153 ---IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSA  229 (262)
T ss_pred             ---CCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCCcCCCCHHHHHHHH
Confidence               1124578899999886653       3689999999999998753211000    0  0011223467899999999


Q ss_pred             HHHhcC
Q 022216          265 VEALLH  270 (301)
Q Consensus       265 ~~~l~~  270 (301)
                      +.++..
T Consensus       230 ~~L~s~  235 (262)
T PRK07984        230 AFLCSD  235 (262)
T ss_pred             HHHcCc
Confidence            665543

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.88  E-value=9.3e-22  Score=168.48  Aligned_cols=187  Identities=19%  Similarity=0.235  Sum_probs=138.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcC---CCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD---DSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~---~~d~  138 (301)
                      +|+++||||+|+||.+++++|+++|++|++++|++++.+....    ....++.++++|++| .+++.+.+.+   ++|+
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILD-TASHAAFLDSLPALPDI   79 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC-hHHHHHHHHHHhhcCCE
Confidence            4789999999999999999999999999999998876544322    124578999999999 6666665543   3899


Q ss_pred             EEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||||||.....        ++...+++|+.++.++++++.+    .+.++||++||.....   +.         .....
T Consensus        80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---~~---------~~~~~  147 (243)
T PRK07102         80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR---GR---------ASNYV  147 (243)
T ss_pred             EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC---CC---------CCCcc
Confidence            99999864321        1234578999999999988743    4568999999975321   11         11245


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      |+.+|.+.+.+.+       +.|++++.|+||++.++...+.      .......++++|+|+.++..+.++
T Consensus       148 Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~------~~~~~~~~~~~~~a~~i~~~~~~~  213 (243)
T PRK07102        148 YGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGL------KLPGPLTAQPEEVAKDIFRAIEKG  213 (243)
T ss_pred             cHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhcc------CCCccccCCHHHHHHHHHHHHhCC
Confidence            7888888775543       4589999999999999854321      001123578999999999888865

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2e-21  Score=169.38  Aligned_cols=195  Identities=15%  Similarity=0.177  Sum_probs=138.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-------hhc---cccCCCCeEEEEccCCCChHhHHHHh
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-------KTT---LSKDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-------~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      .+++|+++||||+|+||+++++.|+++|++|++++|+.+..       .+.   ......++.++.+|++| .+++.+.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~   81 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD-EDQVAAAV   81 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHH
Confidence            35689999999999999999999999999999999976431       111   11134578899999999 66666555


Q ss_pred             cC------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCC
Q 022216          133 GD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       133 ~~------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~  194 (301)
                      ..      ++|+||||||....        ++++.++++|+.++.++++++..    .+.++||++||.....   .   
T Consensus        82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---~---  155 (273)
T PRK08278         82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD---P---  155 (273)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc---c---
Confidence            41      39999999996432        23456788999999999999853    3346899999864211   1   


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecC-cccCCCCCCceeeccccccccCCCCHHHHHHHHHH
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPG-GLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg-~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                        .+  ...+..|+.+|.+.|.+.+       .++++++.|.|| .+.++......   ........+..++|+|+.++.
T Consensus       156 --~~--~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~~~~---~~~~~~~~~~~p~~va~~~~~  228 (273)
T PRK08278        156 --KW--FAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVRNLL---GGDEAMRRSRTPEIMADAAYE  228 (273)
T ss_pred             --cc--cCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHHhcc---cccccccccCCHHHHHHHHHH
Confidence              00  0235679999999997664       358999999999 46665322211   111122346789999999987


Q ss_pred             HhcCC
Q 022216          267 ALLHP  271 (301)
Q Consensus       267 ~l~~~  271 (301)
                      ++..+
T Consensus       229 l~~~~  233 (273)
T PRK08278        229 ILSRP  233 (273)
T ss_pred             HhcCc
Confidence            77654

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.88  E-value=4.3e-21  Score=163.59  Aligned_cols=201  Identities=19%  Similarity=0.217  Sum_probs=143.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC--CCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +.+++++||||+|+||++++++|+++|++|++++|++++..+.....  ..++.++.+|++| .+++.+.+++      +
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   82 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRD-EADVQRAVDAIVAAFGG   82 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            34789999999999999999999999999999999886655433211  1578899999999 7666665541      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +|+|||++|....        +++...+++|+.++.++++++.+   .+.++||++||...+...            ...
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------~~~  150 (237)
T PRK07326         83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFF------------AGG  150 (237)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCC------------CCC
Confidence            9999999986432        12345688999999999888753   345789999998643211            123


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCC-CCc
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPES-SYK  276 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~  276 (301)
                      ..|..+|.+.+.+.+       ..|+++++|+||++.++......   ...  ....++++|+++.++.++..+.. ...
T Consensus       151 ~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~---~~~--~~~~~~~~d~a~~~~~~l~~~~~~~~~  225 (237)
T PRK07326        151 AAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTP---SEK--DAWKIQPEDIAQLVLDLLKMPPRTLPS  225 (237)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccccc---chh--hhccCCHHHHHHHHHHHHhCCcccccc
Confidence            567788887665443       36899999999999887543321   111  11247899999999999877652 233


Q ss_pred             EEEeec
Q 022216          277 VVEIIS  282 (301)
Q Consensus       277 ~~~v~~  282 (301)
                      ...+.+
T Consensus       226 ~~~~~~  231 (237)
T PRK07326        226 KIEVRP  231 (237)
T ss_pred             ceEEec
Confidence            444443

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.88  E-value=7e-22  Score=167.21  Aligned_cols=176  Identities=15%  Similarity=0.100  Sum_probs=130.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC---CCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---~~d~Vi~~A  143 (301)
                      |+++||||+|+||+++++.|+++|++|++++|+.+++++...  ..++.++++|++| .+++.+.++.   ++|++||||
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~--~~~~~~~~~D~~~-~~~v~~~~~~~~~~id~lv~~a   77 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK--ELDVDAIVCDNTD-PASLEEARGLFPHHLDTIVNVP   77 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--hccCcEEecCCCC-HHHHHHHHHHHhhcCcEEEECC
Confidence            479999999999999999999999999999998777655432  1246788999999 7777776642   399999999


Q ss_pred             CCCC-------------CCCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          144 GFQP-------------GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       144 g~~~-------------~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      |...             .++|+..+++|+.+++++++++.+.  ..++||++||...       +         ....|.
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~-------~---------~~~~Y~  141 (223)
T PRK05884         78 APSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP-------P---------AGSAEA  141 (223)
T ss_pred             CccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC-------C---------CccccH
Confidence            7411             1245677899999999999998542  2369999999640       0         124677


Q ss_pred             HHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhc
Q 022216          209 IAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       209 ~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      .+|.+.+.+.+       .+|++++.|.||++.+++....      ..  .+...++|+++++..++.
T Consensus       142 asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~~~------~~--~p~~~~~~ia~~~~~l~s  201 (223)
T PRK05884        142 AIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGYDGL------SR--TPPPVAAEIARLALFLTT  201 (223)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhhhhc------cC--CCCCCHHHHHHHHHHHcC
Confidence            88888775543       4689999999999988753211      01  112378999999965543

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.88  E-value=2.5e-21  Score=164.89  Aligned_cols=206  Identities=26%  Similarity=0.343  Sum_probs=149.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch--hhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+|+||||.+|+.+++.|++.|++|+++.|+..+  ..++.   ..+++++.+|+.| .+++.++|++ +|.||.+.+..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~---~~g~~vv~~d~~~-~~~l~~al~g-~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQ---ALGAEVVEADYDD-PESLVAALKG-VDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHH---HTTTEEEES-TT--HHHHHHHHTT-CSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhh---cccceEeecccCC-HHHHHHHHcC-CceEEeecCcc
Confidence            7999999999999999999999999999999854  22222   2577889999999 8999999999 99999988754


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEE
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~  226 (301)
                      .        ........++++||++.|+++||+.|....+....     .    ..+...+...|...|+++++.+++++
T Consensus        76 ~--------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~-----~----~~p~~~~~~~k~~ie~~l~~~~i~~t  138 (233)
T PF05368_consen   76 H--------PSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESS-----G----SEPEIPHFDQKAEIEEYLRESGIPYT  138 (233)
T ss_dssp             C--------CCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTT-----T----STTHHHHHHHHHHHHHHHHHCTSEBE
T ss_pred             h--------hhhhhhhhhHHHhhhccccceEEEEEecccccccc-----c----ccccchhhhhhhhhhhhhhhccccce
Confidence            3        22356679999999999999999755543321100     0    01123345689999999999999999


Q ss_pred             EEecCcccCCC----------CCC--ceeeccccccccCC-CCHHHHHHHHHHHhcCCCCC--CcEEEeecCCCCCCcCH
Q 022216          227 IIRPGGLRNEP----------PTG--NIIMETEDTLYEGT-ISRDQVAEVAVEALLHPESS--YKVVEIISRVDAPKRSY  291 (301)
Q Consensus       227 ~irpg~v~~~~----------~~~--~~~~~~~~~~~~~~-v~~~Dva~~~~~~l~~~~~~--~~~~~v~~~~~~~~~s~  291 (301)
                      +||||.++...          ...  .+.+.........+ ++.+|+|+++..+|.+|...  ++.+.+.+    +.+|+
T Consensus       139 ~i~~g~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~~~~----~~~t~  214 (233)
T PF05368_consen  139 IIRPGFFMENLLPPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHNNGKTIFLAG----ETLTY  214 (233)
T ss_dssp             EEEE-EEHHHHHTTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEEEGG----GEEEH
T ss_pred             eccccchhhhhhhhhcccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHHhcCCEEEEeCC----CCCCH
Confidence            99999776531          111  12222222211123 58999999999999987643  56666655    88999


Q ss_pred             HHHHHHhhc
Q 022216          292 EDLFGSIKQ  300 (301)
Q Consensus       292 ~e~~~~i~~  300 (301)
                      +|+++.+++
T Consensus       215 ~eia~~~s~  223 (233)
T PF05368_consen  215 NEIAAILSK  223 (233)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999876

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.88  E-value=5.6e-21  Score=164.77  Aligned_cols=188  Identities=19%  Similarity=0.259  Sum_probs=134.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCch-hhhcc----ccCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDK-AKTTL----SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~-~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      ++++||||||+|+||++++++|+++| ++|++++|+.+. +++..    .....+++++.+|++| .+++.+.+.     
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~-~~~~~~~~~~~~~~   85 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD-TDSHPKVIDAAFAG   85 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC-hHHHHHHHHHHHhc
Confidence            46899999999999999999999995 899999998875 43322    1122378999999999 555433332     


Q ss_pred             CCCCEEEEccCCCCC--CCCC------CceeeehHHHHHH----HHHHHHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          134 DDSEAVVCATGFQPG--WDLF------APWKVDNFGTVNL----VEACRKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--~~~~------~~~~~N~~g~~~l----~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      +++|++|||+|....  ..+.      ..+++|+.++.++    ++++++.+.++||++||...+.   +.         
T Consensus        86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~---~~---------  153 (253)
T PRK07904         86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER---VR---------  153 (253)
T ss_pred             CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC---CC---------
Confidence            149999999987532  1221      2479999998775    5555666678999999986321   11         


Q ss_pred             chhhHHHHHHHHHHHH-------HHHcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          202 NVFGLTLIAKLQAEQY-------IRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~-------~~~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      .....|+.+|.+.+.+       ++.+++++++|+||++.+++.....     ..  ...++++|+|+.++..+.++.
T Consensus       154 ~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~~-----~~--~~~~~~~~~A~~i~~~~~~~~  224 (253)
T PRK07904        154 RSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHAK-----EA--PLTVDKEDVAKLAVTAVAKGK  224 (253)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccCC-----CC--CCCCCHHHHHHHHHHHHHcCC
Confidence            1124577888877643       3357999999999999997643211     11  135799999999999998664

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.3e-21  Score=169.48  Aligned_cols=207  Identities=18%  Similarity=0.099  Sum_probs=139.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc--cccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT--LSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++|+++||||+|+||++++++|+++|++|++++|+....+..  ......++.++.+|++| .+++.+.+..      +
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~~   82 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRD-PASVAAAIKRAKEKEGR   82 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999999886422111  11123567889999999 7666655442      4


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++++..+++|+.++.++++++.+    .+.++||++||....  ...         ...
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~--~~~---------~~~  151 (263)
T PRK08226         83 IDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGD--MVA---------DPG  151 (263)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc--ccC---------CCC
Confidence            9999999996432        12344688999999999998743    345799999997531  111         112


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----------c--cccccccCCCCHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----------E--TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----------~--~~~~~~~~~v~~~Dva~~~  264 (301)
                      +..|+.+|.+.+.+.+       ..+++++.|+||.+.|++.......          .  ........+.+++|+|+++
T Consensus       152 ~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~  231 (263)
T PRK08226        152 ETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELA  231 (263)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCCCCCCCHHHHHHHH
Confidence            4568888988876653       2489999999999999854321100          0  0011122356899999998


Q ss_pred             HHHhcCC--CCCCcEEEeec
Q 022216          265 VEALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       265 ~~~l~~~--~~~~~~~~v~~  282 (301)
                      +.++...  ...++++.+.+
T Consensus       232 ~~l~~~~~~~~~g~~i~~dg  251 (263)
T PRK08226        232 AFLASDESSYLTGTQNVIDG  251 (263)
T ss_pred             HHHcCchhcCCcCceEeECC
Confidence            6555322  23344444433

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.87  E-value=1.2e-21  Score=169.58  Aligned_cols=193  Identities=16%  Similarity=0.184  Sum_probs=131.6

Q ss_pred             ccCCeEEEEcC--CchHHHHHHHHHHHCCCeEEEEEeC---CchhhhccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRD---LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGa--tG~iG~~~~~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++|++|||||  +++||++++++|+++|++|++..|.   .+.++++..+. .....+.+|++| .+++.+++..    
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d-~~~v~~~~~~~~~~   81 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF-GSDLVFPCDVAS-DEQIDALFASLGQH   81 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc-CCcceeeccCCC-HHHHHHHHHHHHHH
Confidence            46899999996  6899999999999999999987653   23333322211 233578999999 6666555432    


Q ss_pred             --CCCEEEEccCCCCC-------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 --DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                        ++|++|||||....             ++|+..+++|+.+.+.+++++...  +.++||++||....   .+      
T Consensus        82 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~---~~------  152 (260)
T PRK06997         82 WDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE---RV------  152 (260)
T ss_pred             hCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc---cC------
Confidence              49999999996421             234567899999999999988542  23689999997532   11      


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~  264 (301)
                         ...+..|..+|.+.+.+.+       .+|++++.|.||.+.+++........      ........+..++|+|+++
T Consensus       153 ---~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~  229 (260)
T PRK06997        153 ---VPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAPLRRNVTIEEVGNVA  229 (260)
T ss_pred             ---CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcCcccccCCHHHHHHHH
Confidence               1124568889998876553       36899999999999987532210000      0011122356899999999


Q ss_pred             HHHhcC
Q 022216          265 VEALLH  270 (301)
Q Consensus       265 ~~~l~~  270 (301)
                      ..++..
T Consensus       230 ~~l~s~  235 (260)
T PRK06997        230 AFLLSD  235 (260)
T ss_pred             HHHhCc
Confidence            665543

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.8e-21  Score=172.48  Aligned_cols=216  Identities=18%  Similarity=0.102  Sum_probs=139.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ++++|+|+||||+||||++++++|+++|++|++++|+.++.++....     ...++.++.+|++| .+++.+.+..   
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~   91 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS-LASVRAAADALRA   91 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999987654432111     13468899999999 6666655432   


Q ss_pred             ---CCCEEEEccCCCC------CCCCCCceeeehHHHHHH----HHHHHHcCCCEEEEecccccccccCCCCC-Ccchhh
Q 022216          135 ---DSEAVVCATGFQP------GWDLFAPWKVDNFGTVNL----VEACRKRGVNRFILISSILVNGAAMGQIL-NPAYIF  200 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~------~~~~~~~~~~N~~g~~~l----~~a~~~~~~~~iV~~SS~~~~~~~~~~~~-~~~~~~  200 (301)
                         ++|+||||||...      .++++..+++|+.|.+.+    ++.+++.+.++||++||...+........ .....+
T Consensus        92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~  171 (306)
T PRK06197         92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWERR  171 (306)
T ss_pred             hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCcccC
Confidence               3999999999642      235667889999995554    44455555679999999875421111000 000112


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEE--EecCcccCCCCCCceeec-cccccccC--CCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTI--IRPGGLRNEPPTGNIIME-TEDTLYEG--TISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~--irpg~v~~~~~~~~~~~~-~~~~~~~~--~v~~~Dva~~~~~~l  268 (301)
                      ..+...|+.+|++.+.+.+       ..++++++  ++||.+.|++..+..... ........  ...+++-+..++.+.
T Consensus       172 ~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  251 (306)
T PRK06197        172 YNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNLPRALRPVATVLAPLLAQSPEMGALPTLRAA  251 (306)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccCcHHHHHHHHHHHhhhcCCHHHHHHHHHHHh
Confidence            3456789999999886553       24666655  479999998754321100 00000011  245676776666665


Q ss_pred             cCCC-CCCcEEE
Q 022216          269 LHPE-SSYKVVE  279 (301)
Q Consensus       269 ~~~~-~~~~~~~  279 (301)
                      .++. ..+..|+
T Consensus       252 ~~~~~~~g~~~~  263 (306)
T PRK06197        252 TDPAVRGGQYYG  263 (306)
T ss_pred             cCCCcCCCeEEc
Confidence            5543 2344444

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.87  E-value=2.2e-21  Score=167.90  Aligned_cols=195  Identities=15%  Similarity=0.104  Sum_probs=134.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      .+++|++|||||+|+||++++++|+++|++|+++.|+... .....   .....++.++.+|++| .+++.+.+..    
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~   82 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTV-ESDVVNLIQTAVKE   82 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCC-HHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999988885432 22111   1124567889999999 6666554431    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcC-CCEEEEecccccccccCCCCCCcchh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        ++|+||||||....        ++++.++++|+.+.+.+++++    ++.+ .++||++||...+.            
T Consensus        83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~------------  150 (261)
T PRK08936         83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI------------  150 (261)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC------------
Confidence              49999999996432        234567899999987766654    4444 36999999975321            


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~~~  266 (301)
                      +...+..|+.+|.+.+.+.+       ..|++++.|+||++.+++.........      .......+..++|+++.+..
T Consensus       151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~  230 (261)
T PRK08936        151 PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIPMGYIGKPEEIAAVAAW  230 (261)
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            11224568888877765443       358999999999999986443211100      01122346689999999976


Q ss_pred             HhcC
Q 022216          267 ALLH  270 (301)
Q Consensus       267 ~l~~  270 (301)
                      ++..
T Consensus       231 l~s~  234 (261)
T PRK08936        231 LASS  234 (261)
T ss_pred             HcCc
Confidence            6653

>PRK12743 oxidoreductase; Provisional

Probab=99.87  E-value=1.7e-21  Score=168.28  Aligned_cols=204  Identities=15%  Similarity=0.106  Sum_probs=140.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +|++|||||+|+||++++++|+++|++|+++.|+.. ..+...   .....++.++.+|++| .+++.+++.+      +
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD-LPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            579999999999999999999999999998866543 322221   1134578999999999 6655554432      4


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----C-CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----G-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|+||||||....        +++..++++|+.+..++++++.+.    + .++||++||.....            +..
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~~~  148 (256)
T PRK12743         81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT------------PLP  148 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC------------CCC
Confidence            9999999996432        234567899999999999987432    2 36899999975211            122


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---e-ccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---M-ETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~-~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      +...|+.+|.+.+.+++       ..|++++.|+||.+.++.......   . .........+.+++|+|+++..++...
T Consensus       149 ~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~  228 (256)
T PRK12743        149 GASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIPLGRPGDTHEIASLVAWLCSEG  228 (256)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcc
Confidence            34678899998886653       358999999999999986432100   0 000111123568999999997666433


Q ss_pred             C--CCCcEEEeec
Q 022216          272 E--SSYKVVEIIS  282 (301)
Q Consensus       272 ~--~~~~~~~v~~  282 (301)
                      .  ..+.++.+.+
T Consensus       229 ~~~~~G~~~~~dg  241 (256)
T PRK12743        229 ASYTTGQSLIVDG  241 (256)
T ss_pred             ccCcCCcEEEECC
Confidence            2  3455666554

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2.7e-21  Score=167.62  Aligned_cols=195  Identities=15%  Similarity=0.168  Sum_probs=140.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC-----CC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-----DS  136 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~-----~~  136 (301)
                      ++++++|||||+|+||.+++++|+++|++|++++|+.+..+++...  ...++.++.+|++| .+++.+.+..     ++
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~i   81 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS-EAGREAVLARAREMGGI   81 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHhcCCC
Confidence            4678999999999999999999999999999999987765544321  24578899999999 6666554431     38


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        +++...+++|+.|+.++++++.+    .+.+++|++||...+...   +         ..
T Consensus        82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---~---------~~  149 (263)
T PRK09072         82 NVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGY---P---------GY  149 (263)
T ss_pred             CEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCC---C---------Cc
Confidence            999999996432        12345678999999999988843    344689999997532111   1         13


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ..|+.+|.+.+.+++       ..+++++.+.||.+.++......... .........+++|+|+.++.++..+.
T Consensus       150 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~-~~~~~~~~~~~~~va~~i~~~~~~~~  223 (263)
T PRK09072        150 ASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEAVQAL-NRALGNAMDDPEDVAAAVLQAIEKER  223 (263)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhhcccc-cccccCCCCCHHHHHHHHHHHHhCCC
Confidence            557888887765442       36899999999999887643221100 01111245789999999999998653

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2.8e-21  Score=168.55  Aligned_cols=191  Identities=14%  Similarity=0.226  Sum_probs=138.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~V  139 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+.++.+.+..   .++.++.+|++| .+++.+.+..      ++|+|
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~v   76 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA---AGFTAVQLDVND-GAALARLAEELEAEHGGLDVL   76 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---CCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEE
Confidence            3789999999999999999999999999999998776655432   357889999999 6666655421      39999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      |||||....        ++++..+++|+.|+.++++++..   .+.+++|++||...+...            ...+.|.
T Consensus        77 i~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~~Y~  144 (274)
T PRK05693         77 INNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVT------------PFAGAYC  144 (274)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCC------------CCccHHH
Confidence            999996432        23455688999999999998733   234789999997643211            1235688


Q ss_pred             HHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccc---------------cCCCCHHHHHH
Q 022216          209 IAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLY---------------EGTISRDQVAE  262 (301)
Q Consensus       209 ~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~---------------~~~v~~~Dva~  262 (301)
                      .+|.+.+.+.+       .+|++++.|+||.+.|+........    ......+               ....+++|+|+
T Consensus       145 ~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  224 (274)
T PRK05693        145 ASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARARASQDNPTPAAEFAR  224 (274)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence            89988876542       3699999999999998864432100    0000000               12368999999


Q ss_pred             HHHHHhcCCC
Q 022216          263 VAVEALLHPE  272 (301)
Q Consensus       263 ~~~~~l~~~~  272 (301)
                      .++.++.++.
T Consensus       225 ~i~~~~~~~~  234 (274)
T PRK05693        225 QLLAAVQQSP  234 (274)
T ss_pred             HHHHHHhCCC
Confidence            9999998654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=3.6e-21  Score=164.88  Aligned_cols=206  Identities=20%  Similarity=0.175  Sum_probs=144.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      +.+|++|||||+|+||.++++.|+++|++|+++ .|+++...+...   ....++.++.+|++| .+++.+.+.      
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   81 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSS-EEDVENLVEQIVEKF   81 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHh
Confidence            457899999999999999999999999999998 887765543321   123568899999999 776666554      


Q ss_pred             -CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          134 -DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       + +|+|||++|....        ++++..+++|+.+..++++++.    +.+.++||++||...+....          
T Consensus        82 ~~-id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~----------  150 (247)
T PRK05565         82 GK-IDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGAS----------  150 (247)
T ss_pred             CC-CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCC----------
Confidence             5 9999999996532        2345678899999988888874    34457899999976543211          


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc----ccccccCCCCHHHHHHHHHHHhc
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET----EDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~----~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                        ....|+.+|.+.+.+++       ..|+++++++||.+.++..........    .......+..++|+++.++.++.
T Consensus       151 --~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~  228 (247)
T PRK05565        151 --CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAEEIPLGRLGKPEEIAKVVLFLAS  228 (247)
T ss_pred             --CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcC
Confidence              13457778877665442       468999999999998875432210000    01111235689999999987775


Q ss_pred             CCC--CCCcEEEeecC
Q 022216          270 HPE--SSYKVVEIISR  283 (301)
Q Consensus       270 ~~~--~~~~~~~v~~~  283 (301)
                      ...  ..++.+++.++
T Consensus       229 ~~~~~~~g~~~~~~~~  244 (247)
T PRK05565        229 DDASYITGQIITVDGG  244 (247)
T ss_pred             CccCCccCcEEEecCC
Confidence            432  45667766653

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.87  E-value=3.1e-21  Score=166.19  Aligned_cols=203  Identities=16%  Similarity=0.132  Sum_probs=139.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh-------cCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI-------GDD  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-------~~~  135 (301)
                      +|+++||||+|+||+++++.|+++|++|++++|+.+..++...   ....++.++.+|++| ++++.+.+       +. 
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~-   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEKFGR-   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC-
Confidence            4799999999999999999999999999999998766544322   123578899999999 66665544       34 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|+||||||....        ++|..++++|+.+++++++++.+    .+ .++||++||...+...   +         
T Consensus        79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~---~---------  146 (252)
T PRK07677         79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG---P---------  146 (252)
T ss_pred             ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC---C---------
Confidence            9999999985321        23566789999999999999843    22 3689999998633211   1         


Q ss_pred             hhhHHHHHHHHHHHHHH--------HcCCcEEEEecCcccCCCCCCceeecc-------ccccccCCCCHHHHHHHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~--------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ....|+.+|.+.+.+.+        ++|++++.|+||.+.++..........       .......+..++|+|+++..+
T Consensus       147 ~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l  226 (252)
T PRK07677        147 GVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPLGRLGTPEEIAGLAYFL  226 (252)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Confidence            12456677777665543        358999999999998643211111000       011123467899999998665


Q ss_pred             hcCC--CCCCcEEEeec
Q 022216          268 LLHP--ESSYKVVEIIS  282 (301)
Q Consensus       268 l~~~--~~~~~~~~v~~  282 (301)
                      +..+  ...++++.+.+
T Consensus       227 ~~~~~~~~~g~~~~~~g  243 (252)
T PRK07677        227 LSDEAAYINGTCITMDG  243 (252)
T ss_pred             cCccccccCCCEEEECC
Confidence            5432  23455565554

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.87  E-value=4.6e-21  Score=164.60  Aligned_cols=187  Identities=19%  Similarity=0.237  Sum_probs=138.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +|+++||||+|+||++++++|+++|++|++++|++++.++....     ...++.++.+|++| .+++.+.+..      
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND-HDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999988765543221     24578899999999 6666554431      


Q ss_pred             CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||||+....        ++...+++|+.+..++++++.    +.+.++||++||.......   +        .
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---~--------~  149 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL---P--------G  149 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC---C--------C
Confidence            399999999975432        123457899999999888873    4466799999997543211   1        1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      +...|+.+|.+.+.+.+       ..+++++.|+||++.+++....-     .  ....++++|.|+.++.++..+
T Consensus       150 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~-----~--~~~~~~~~~~a~~i~~~~~~~  218 (248)
T PRK08251        150 VKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKAK-----S--TPFMVDTETGVKALVKAIEKE  218 (248)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhccc-----c--CCccCCHHHHHHHHHHHHhcC
Confidence            23568899998876553       24799999999999988644321     0  113578999999999999764

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2.8e-21  Score=166.92  Aligned_cols=207  Identities=15%  Similarity=0.171  Sum_probs=138.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch----hhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----AKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~----~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-  134 (301)
                      .+++|++|||||+|+||.++++.|++.|++|+++.++...    .++..   ...+.++.++++|++| .+++.+.+.. 
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~   83 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTT-AAAVEKLFDDA   83 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCC-HHHHHHHHHHH
Confidence            3467999999999999999999999999998777665322    11111   1123478899999999 7666655532 


Q ss_pred             -----CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchh
Q 022216          135 -----DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                           ++|+||||||....        ++++.++++|+.++..+++++.+.  ..+++++++|..+....          
T Consensus        84 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~----------  153 (257)
T PRK12744         84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT----------  153 (257)
T ss_pred             HHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC----------
Confidence                 49999999996321        235567899999999999998643  12567766332211100          


Q ss_pred             hcchhhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCceeec--------cccccc--cCCCCHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNIIME--------TEDTLY--EGTISRDQVAE  262 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~~~--------~~~~~~--~~~v~~~Dva~  262 (301)
                        ..+..|+.+|.+.|.+.+.       .|++++.|+||.+.+++..+.....        ......  ..+.+++|+|+
T Consensus       154 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~  231 (257)
T PRK12744        154 --PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHKTAAALSPFSKTGLTDIEDIVP  231 (257)
T ss_pred             --CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhcccccccccccccCCCCCHHHHHH
Confidence              1236788999999876642       4799999999999887532211000        000111  14678999999


Q ss_pred             HHHHHhcCCC-CCCcEEEeec
Q 022216          263 VAVEALLHPE-SSYKVVEIIS  282 (301)
Q Consensus       263 ~~~~~l~~~~-~~~~~~~v~~  282 (301)
                      ++..++.... ..++++++.+
T Consensus       232 ~~~~l~~~~~~~~g~~~~~~g  252 (257)
T PRK12744        232 FIRFLVTDGWWITGQTILING  252 (257)
T ss_pred             HHHHhhcccceeecceEeecC
Confidence            9977666321 2356776665

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.87  E-value=9.9e-22  Score=169.75  Aligned_cols=204  Identities=17%  Similarity=0.157  Sum_probs=137.6

Q ss_pred             ccCCeEEEEcC--CchHHHHHHHHHHHCCCeEEEEEeCC--chhhhccccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDL--DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGa--tG~iG~~~~~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++|+++||||  +++||.+++++|+++|++|++.+|+.  +..++........+.++.+|++| .+++.+.+..     
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~   83 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTN-EEHLASLADRVREHV   83 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCC-HHHHHHHHHHHHHHc
Confidence            46899999999  89999999999999999999988764  22333322223467889999999 6666554421     


Q ss_pred             -CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchh
Q 022216          135 -DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                       ++|++|||||+...            ++++..+++|+.+.+.+++++...  ..++||++|+...    ..        
T Consensus        84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~----~~--------  151 (256)
T PRK07889         84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDAT----VA--------  151 (256)
T ss_pred             CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccc----cc--------
Confidence             49999999997521            123446899999999998887432  2368999886421    11        


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-----cccccc--CCCCHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-----EDTLYE--GTISRDQVAEVAV  265 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-----~~~~~~--~~v~~~Dva~~~~  265 (301)
                       ...+..|+.+|.+.+.+.+       .+||+++.|.||.+.+++.........     ......  .+..++|+|++++
T Consensus       152 -~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~evA~~v~  230 (256)
T PRK07889        152 -WPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPLGWDVKDPTPVARAVV  230 (256)
T ss_pred             -CCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCccccccCCHHHHHHHHH
Confidence             1224668889988876543       468999999999999986432110000     011111  3578999999997


Q ss_pred             HHhcCCC--CCCcEEEee
Q 022216          266 EALLHPE--SSYKVVEII  281 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~  281 (301)
                      .++..+.  ..++++.+.
T Consensus       231 ~l~s~~~~~~tG~~i~vd  248 (256)
T PRK07889        231 ALLSDWFPATTGEIVHVD  248 (256)
T ss_pred             HHhCcccccccceEEEEc
Confidence            6664332  234444443

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.7e-21  Score=168.83  Aligned_cols=194  Identities=18%  Similarity=0.103  Sum_probs=137.8

Q ss_pred             cccCCeEEEEcCCc-hHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           63 SVKQKKIFVAGATG-SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG-~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      .+++|+++||||+| +||+++++.|+++|++|++++|+.+++++....     ...++.++++|+++ .+++.+++..  
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~   92 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS-EAQVDALIDAAV   92 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC-HHHHHHHHHHHH
Confidence            34589999999997 899999999999999999999887665443211     12468899999999 6666655431  


Q ss_pred             ----CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcc
Q 022216          135 ----DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                          ++|+||||||....        ++|...+++|+.+...+++++.+    .+ .++||++||...+..         
T Consensus        93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~---------  163 (262)
T PRK07831         93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRA---------  163 (262)
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC---------
Confidence                39999999996432        24556778999999998888742    33 468999998753211         


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----eccccccccCCCCHHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----METEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                         ......|+.+|.+.+.+.+       .+|++++.|+||.+.+++......     ..........+..++|+|++++
T Consensus       164 ---~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~  240 (262)
T PRK07831        164 ---QHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREAFGRAAEPWEVANVIA  240 (262)
T ss_pred             ---CCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence               1224568899999887654       368999999999999986432100     0001112234668999999996


Q ss_pred             HHhc
Q 022216          266 EALL  269 (301)
Q Consensus       266 ~~l~  269 (301)
                      .++.
T Consensus       241 ~l~s  244 (262)
T PRK07831        241 FLAS  244 (262)
T ss_pred             HHcC
Confidence            6554

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.87  E-value=4.4e-21  Score=164.21  Aligned_cols=204  Identities=18%  Similarity=0.160  Sum_probs=141.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      |++|||||+|+||+++++.|+++|++|++++|+... ..+..   .....++.++.+|++| .+++.+++..      ++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~i   81 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTD-TEECAEALAEIEEEEGPV   81 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999988532 11111   1123568899999999 7666665532      49


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++++.++++|+.+..++++++    ++.+.++||++||...+....            ..
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~------------~~  149 (245)
T PRK12824         82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQF------------GQ  149 (245)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCC------------CC
Confidence            999999986432        234567789999999986655    555667999999986553221            13


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec----cccccccCCCCHHHHHHHHHHHhcCCC-
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME----TEDTLYEGTISRDQVAEVAVEALLHPE-  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~----~~~~~~~~~v~~~Dva~~~~~~l~~~~-  272 (301)
                      ..|..+|.+.+.+.+       ..++++++++||++.++.........    ........+..++|+++++..++..+. 
T Consensus       150 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~  229 (245)
T PRK12824        150 TNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQIPMKRLGTPEEIAAAVAFLVSEAAG  229 (245)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccc
Confidence            467788887765543       46899999999999987643211000    011112235689999999966664332 


Q ss_pred             -CCCcEEEeecC
Q 022216          273 -SSYKVVEIISR  283 (301)
Q Consensus       273 -~~~~~~~v~~~  283 (301)
                       ..++++++.++
T Consensus       230 ~~~G~~~~~~~g  241 (245)
T PRK12824        230 FITGETISINGG  241 (245)
T ss_pred             CccCcEEEECCC
Confidence             35677777764

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.87  E-value=3e-21  Score=167.49  Aligned_cols=208  Identities=18%  Similarity=0.154  Sum_probs=144.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|++|||||+|+||.+++++|+++|++|++++|+++...+...   ....++.++.+|++| .+++.+.+.+     
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~   84 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIADEF   84 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            4568999999999999999999999999999999998766543321   123467889999999 7666665432     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       ++|+||||||....        +++...+++|+.++.++++++.+.   ..++||++||...+..            ..
T Consensus        85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~------------~~  152 (264)
T PRK07576         85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVP------------MP  152 (264)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccC------------CC
Confidence             38999999985321        234456789999999999988532   2269999999864321            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccC-CCCCCce-----ee-ccccccccCCCCHHHHHHHHHHHh
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRN-EPPTGNI-----IM-ETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~-~~~~~~~-----~~-~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      .+..|..+|.+.+.+.+       ..|++++.|+||.+.+ +......     .. .........+..++|+|+.++.++
T Consensus       153 ~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  232 (264)
T PRK07576        153 MQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQSVPLKRNGTKQDIANAALFLA  232 (264)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence            24678899999887664       2689999999999874 3111100     00 000111234678999999998777


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      ..+.  ..++.+.+.++
T Consensus       233 ~~~~~~~~G~~~~~~gg  249 (264)
T PRK07576        233 SDMASYITGVVLPVDGG  249 (264)
T ss_pred             ChhhcCccCCEEEECCC
Confidence            6432  34556655553

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.87  E-value=6.1e-21  Score=199.78  Aligned_cols=231  Identities=22%  Similarity=0.296  Sum_probs=165.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC----CeEEEEEeCCchhhh---cc----------ccCCCCeEEEEccCCCC----
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG----FAVKAGVRDLDKAKT---TL----------SKDNPSLQIVKADVTEG----  124 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G----~~V~~~~r~~~~~~~---~~----------~~~~~~~~~~~~Dl~~~----  124 (301)
                      .++||||||+||||.++++.|+++|    ++|+++.|.......   +.          .....+++++.+|++++    
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence            5799999999999999999999987    799999997543221   10          00124789999999863    


Q ss_pred             -hHhHHHHhcCCCCEEEEccCCCCCCC-CCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCC-----------
Q 022216          125 -SAKLSEAIGDDSEAVVCATGFQPGWD-LFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG-----------  191 (301)
Q Consensus       125 -~~~~~~~~~~~~d~Vi~~Ag~~~~~~-~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~-----------  191 (301)
                       .+.+.++..+ +|+|||||+...... .......|+.|+.++++++++.++++|+|+||.++|+....           
T Consensus      1051 ~~~~~~~l~~~-~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~ 1129 (1389)
T TIGR03443      1051 SDEKWSDLTNE-VDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELVQAG 1129 (1389)
T ss_pred             CHHHHHHHHhc-CCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhhhcc
Confidence             3455666667 999999998654322 22233579999999999999888899999999999863210           


Q ss_pred             -CCCCcch--h--hcchhhHHHHHHHHHHHHHHH---cCCcEEEEecCcccCCCCCCcee--------------e--ccc
Q 022216          192 -QILNPAY--I--FLNVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTGNII--------------M--ETE  247 (301)
Q Consensus       192 -~~~~~~~--~--~~~~~~~y~~sK~~~e~~~~~---~~i~~~~irpg~v~~~~~~~~~~--------------~--~~~  247 (301)
                       ....+..  .  .......|+.+|+.+|+++..   .|++++++|||.++|+...+...              .  .+.
T Consensus      1130 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~ 1209 (1389)
T TIGR03443      1130 GAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLGLIPN 1209 (1389)
T ss_pred             CCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHhCCcCC
Confidence             0001110  0  112235699999999988753   58999999999999986443210              0  011


Q ss_pred             cccccCCCCHHHHHHHHHHHhcCCC--CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          248 DTLYEGTISRDQVAEVAVEALLHPE--SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       248 ~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ......+++++|+|++++.++..+.  ..+.+||+.++   ..+++.++++.+.+
T Consensus      1210 ~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~ 1261 (1389)
T TIGR03443      1210 INNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGH---PRIRFNDFLGTLKT 1261 (1389)
T ss_pred             CCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCC---CCCcHHHHHHHHHH
Confidence            1112468899999999998887653  24568888875   78999999988753

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=2.6e-21  Score=167.15  Aligned_cols=205  Identities=16%  Similarity=0.104  Sum_probs=137.7

Q ss_pred             ccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCC-----------chhhh---ccccCCCCeEEEEccCCCChHh
Q 022216           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDL-----------DKAKT---TLSKDNPSLQIVKADVTEGSAK  127 (301)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~-----------~~~~~---~~~~~~~~~~~~~~Dl~~~~~~  127 (301)
                      +++|++|||||+|  +||++++++|+++|++|+++.|..           .+..+   .....+.++.++++|++| .++
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~   82 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQ-NDA   82 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHH
Confidence            5689999999995  999999999999999999875421           11111   111234578899999999 666


Q ss_pred             HHHHhcC------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEeccccccccc
Q 022216          128 LSEAIGD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAA  189 (301)
Q Consensus       128 ~~~~~~~------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~  189 (301)
                      +.+++..      ++|+||||||....        ++++..+++|+.+.+.+.+++    ++.+.++||++||...+.  
T Consensus        83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--  160 (256)
T PRK12859         83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG--  160 (256)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC--
Confidence            6655532      38999999996432        235567899999988886555    334457999999986321  


Q ss_pred             CCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccc-cccCCCCHHHHH
Q 022216          190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDT-LYEGTISRDQVA  261 (301)
Q Consensus       190 ~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~-~~~~~v~~~Dva  261 (301)
                                +...+..|+.+|.+.+.+.+       .+|++++.|+||++.++............. .......++|+|
T Consensus       161 ----------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~d~a  230 (256)
T PRK12859        161 ----------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTEEIKQGLLPMFPFGRIGEPKDAA  230 (256)
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCHHHHHHHHhcCCCCCCcCHHHHH
Confidence                      11235678899998886643       368999999999999875332211000011 112345799999


Q ss_pred             HHHHHHhcCCC--CCCcEEEee
Q 022216          262 EVAVEALLHPE--SSYKVVEII  281 (301)
Q Consensus       262 ~~~~~~l~~~~--~~~~~~~v~  281 (301)
                      ++++.++....  ..++++.+.
T Consensus       231 ~~~~~l~s~~~~~~~G~~i~~d  252 (256)
T PRK12859        231 RLIKFLASEEAEWITGQIIHSE  252 (256)
T ss_pred             HHHHHHhCccccCccCcEEEeC
Confidence            99976654322  234444443

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.87  E-value=4.2e-21  Score=165.91  Aligned_cols=202  Identities=21%  Similarity=0.189  Sum_probs=140.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHH------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLS------  129 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~------  129 (301)
                      .++.+|++||||++.+||+++|++|++.|++|++.+|+.+.+++....      ...++..+.+|+++ .+.+.      
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~l~~~~   82 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSK-EVDVEKLVEFA   82 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCC-HHHHHHHHHHH
Confidence            456899999999999999999999999999999999998875543321      24568999999998 43332      


Q ss_pred             -HH-hcCCCCEEEEccCCCCC---------CCCCCceeeehHH-HHHHHHHHH----HcCCCEEEEecccccccccCCCC
Q 022216          130 -EA-IGDDSEAVVCATGFQPG---------WDLFAPWKVDNFG-TVNLVEACR----KRGVNRFILISSILVNGAAMGQI  193 (301)
Q Consensus       130 -~~-~~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g-~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~  193 (301)
                       +. ++. +|++|||||....         ++|+..+++|+.| .+.+.+++.    +.+.+.|+++||...+...... 
T Consensus        83 ~~~~~Gk-idiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~-  160 (270)
T KOG0725|consen   83 VEKFFGK-IDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGS-  160 (270)
T ss_pred             HHHhCCC-CCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCC-
Confidence             23 344 9999999996542         3577889999995 677777763    3345789999998643222110 


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--------c--cccc-cccCCC
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--------E--TEDT-LYEGTI  255 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--------~--~~~~-~~~~~v  255 (301)
                                ...|..+|.+.+++.+       ..|+|++.|.||.+.++........        .  .... ......
T Consensus       161 ----------~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p~gr~g  230 (270)
T KOG0725|consen  161 ----------GVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRVG  230 (270)
T ss_pred             ----------cccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccccCCcc
Confidence                      1457788888876654       4799999999999999862111110        0  1111 123356


Q ss_pred             CHHHHHHHHHHHhcCCCCCCcE
Q 022216          256 SRDQVAEVAVEALLHPESSYKV  277 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~~~~~~~  277 (301)
                      .++|+|..+. +|..+...+.+
T Consensus       231 ~~~eva~~~~-fla~~~asyit  251 (270)
T KOG0725|consen  231 TPEEVAEAAA-FLASDDASYIT  251 (270)
T ss_pred             CHHHHHHhHH-hhcCccccccc
Confidence            8999999985 55445433444

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2.4e-21  Score=166.32  Aligned_cols=205  Identities=17%  Similarity=0.162  Sum_probs=139.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhc---cccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      ++++|||||+|+||++++++|+++|++|++..++. +...+.   ......++.++.+|++| .+++.+++..      +
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVAD-EADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCC-HHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999999988776443 332222   11123567889999999 6666665542      3


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc----C---CCEEEEecccccccccCCCCCCcchh
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR----G---VNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~----~---~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                      +|+||||||....         +++..++++|+.++.++++++.+.    .   .++||++||...+.....        
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~--------  152 (248)
T PRK06123         81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG--------  152 (248)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC--------
Confidence            9999999996532         133466899999999998887542    1   247999999754321110        


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                         .+..|+.+|.+.+.+.+       .+|+++++|+||+++|++........     ..........+++|++++++.+
T Consensus       153 ---~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~a~~~~~l  229 (248)
T PRK06123        153 ---EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPMGRGGTAEEVARAILWL  229 (248)
T ss_pred             ---CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence               12358899999887653       24899999999999998643211000     0001111235789999999776


Q ss_pred             hcCCC--CCCcEEEeec
Q 022216          268 LLHPE--SSYKVVEIIS  282 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~  282 (301)
                      +....  ..++++++.+
T Consensus       230 ~~~~~~~~~g~~~~~~g  246 (248)
T PRK06123        230 LSDEASYTTGTFIDVSG  246 (248)
T ss_pred             hCccccCccCCEEeecC
Confidence            65432  3567787765

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.87  E-value=3.4e-21  Score=168.10  Aligned_cols=212  Identities=17%  Similarity=0.134  Sum_probs=140.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----CCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----DDSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~~d  137 (301)
                      +|+++|||+ |+||++++++|+ +|++|++++|+.+++++...   ....++.++.+|++| .+++.+.+.     +++|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS-RESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHhcCCCC
Confidence            478999998 799999999996 79999999998766544321   123468889999999 666665553     1499


Q ss_pred             EEEEccCCCC-CCCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccC-C---CC---CCcc-----hh---
Q 022216          138 AVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAM-G---QI---LNPA-----YI---  199 (301)
Q Consensus       138 ~Vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~-~---~~---~~~~-----~~---  199 (301)
                      +||||||+.. ..++..++++|+.|++++++++.+.  ..+++|++||.+...... .   ..   ..+.     .+   
T Consensus        79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
T PRK06940         79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPFLQ  158 (275)
T ss_pred             EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccccccc
Confidence            9999999754 3467888999999999999998543  125678888876432110 0   00   0000     00   


Q ss_pred             h---cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec--------cccccccCCCCHHHHH
Q 022216          200 F---LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME--------TEDTLYEGTISRDQVA  261 (301)
Q Consensus       200 ~---~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~--------~~~~~~~~~v~~~Dva  261 (301)
                      +   ...+..|..+|.+.+.+.+       ..||+++.|.||++.|++....+...        ........+..++|+|
T Consensus       159 ~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peeia  238 (275)
T PRK06940        159 PDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSPAGRPGTPDEIA  238 (275)
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCCcccCCCHHHHH
Confidence            0   0135679999999876543       36899999999999998643221100        0011123467899999


Q ss_pred             HHHHHHhcCCCC---CCcEEEee
Q 022216          262 EVAVEALLHPES---SYKVVEII  281 (301)
Q Consensus       262 ~~~~~~l~~~~~---~~~~~~v~  281 (301)
                      ++++.++ ++..   .++++.+.
T Consensus       239 ~~~~fL~-s~~~~~itG~~i~vd  260 (275)
T PRK06940        239 ALAEFLM-GPRGSFITGSDFLVD  260 (275)
T ss_pred             HHHHHHc-CcccCcccCceEEEc
Confidence            9986554 4433   34444443

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.87  E-value=3.2e-21  Score=171.55  Aligned_cols=189  Identities=22%  Similarity=0.195  Sum_probs=138.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCC-h---HhHHHHhcC-
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEG-S---AKLSEAIGD-  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~-~---~~~~~~~~~-  134 (301)
                      .+++++||||+||||++++++|+++|++|++++|+++++++...+     ....+..+.+|+++. .   +.+.+.+++ 
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            489999999999999999999999999999999998876654321     124677889999852 2   334445554 


Q ss_pred             CCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      ++|++|||||....          ++++..+++|+.|+.++++++.    +.+.++||++||...+... ..        
T Consensus       132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~-~~--------  202 (320)
T PLN02780        132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP-SD--------  202 (320)
T ss_pred             CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-CC--------
Confidence            46699999996421          1234578999999999888873    4456799999998653210 00        


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                       .....|+.+|.+.+.+.+       ..|++++.|.||++.|++....    . .. + ...+++++|+.++..+..
T Consensus       203 -p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~~----~-~~-~-~~~~p~~~A~~~~~~~~~  271 (320)
T PLN02780        203 -PLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIR----R-SS-F-LVPSSDGYARAALRWVGY  271 (320)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccccc----C-CC-C-CCCCHHHHHHHHHHHhCC
Confidence             124678899999886553       3589999999999999875421    1 11 1 136899999999999864

>PRK08324 short chain dehydrogenase; Validated

Probab=99.87  E-value=4.1e-21  Score=186.95  Aligned_cols=208  Identities=21%  Similarity=0.257  Sum_probs=149.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC--CCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      .+.+|+||||||+|+||+++++.|+++|++|++++|+.+..+.......  .++.++.+|++| .+++.+++..      
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd-~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTD-EAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence            3568999999999999999999999999999999999876554332111  478899999999 7666655531      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCC-CEEEEecccccccccCCCCCCcchhhc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGV-NRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      ++|+||||||....        ++|...+++|+.|+.++++++.    +.+. ++||++||...+...            
T Consensus       498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~------------  565 (681)
T PRK08324        498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG------------  565 (681)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC------------
Confidence            39999999996532        2355678999999999987773    4443 799999998643211            


Q ss_pred             chhhHHHHHHHHHHHHHHH-------cCCcEEEEecCccc--CCCCCCcee--------e--------ccccccccCCCC
Q 022216          202 NVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLR--NEPPTGNII--------M--------ETEDTLYEGTIS  256 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~--~~~~~~~~~--------~--------~~~~~~~~~~v~  256 (301)
                      .....|+.+|.+.+.+.+.       .|+++++|+|+.++  ++...+...        .        .........+++
T Consensus       566 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~v~  645 (681)
T PRK08324        566 PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARNLLKREVT  645 (681)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcCCcCCccC
Confidence            2246789999999877642       47999999999995  322221110        0        001122235789


Q ss_pred             HHHHHHHHHHHhc--CCCCCCcEEEeecC
Q 022216          257 RDQVAEVAVEALL--HPESSYKVVEIISR  283 (301)
Q Consensus       257 ~~Dva~~~~~~l~--~~~~~~~~~~v~~~  283 (301)
                      ++|+|++++.++.  .....+.++++.++
T Consensus       646 ~~DvA~a~~~l~s~~~~~~tG~~i~vdgG  674 (681)
T PRK08324        646 PEDVAEAVVFLASGLLSKTTGAIITVDGG  674 (681)
T ss_pred             HHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence            9999999987773  34456778888774

>PRK05855 short chain dehydrogenase; Validated

Probab=99.87  E-value=4e-21  Score=184.35  Aligned_cols=197  Identities=17%  Similarity=0.165  Sum_probs=145.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      .++++++|||||+|+||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+.+..     
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~  390 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD-ADAMEAFAEWVRAEH  390 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHhc
Confidence            4567899999999999999999999999999999998766554322   134578899999999 6666555432     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||....        +++..++++|+.|+.++++++.    +.+ .++||++||.+.|...           
T Consensus       391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-----------  459 (582)
T PRK05855        391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS-----------  459 (582)
T ss_pred             CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC-----------
Confidence             49999999997532        2455678899999999998863    333 3699999999866432           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecccc-----------c-cccCCCCHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETED-----------T-LYEGTISRDQVA  261 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~-----------~-~~~~~v~~~Dva  261 (301)
                       .....|+.+|.+.+.+.+       +.||+++.|+||.+.+++...........           . .......++|+|
T Consensus       460 -~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va  538 (582)
T PRK05855        460 -RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADKLYQRRGYGPEKVA  538 (582)
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhhhccccCCCHHHHH
Confidence             124678899998876543       36899999999999998644321110000           0 011235899999


Q ss_pred             HHHHHHhcCCC
Q 022216          262 EVAVEALLHPE  272 (301)
Q Consensus       262 ~~~~~~l~~~~  272 (301)
                      +.++.++.++.
T Consensus       539 ~~~~~~~~~~~  549 (582)
T PRK05855        539 KAIVDAVKRNK  549 (582)
T ss_pred             HHHHHHHHcCC
Confidence            99999998764

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.86  E-value=6.7e-21  Score=162.77  Aligned_cols=198  Identities=15%  Similarity=0.171  Sum_probs=138.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCC-hHhHH-------H
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEG-SAKLS-------E  130 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~-~~~~~-------~  130 (301)
                      .+++|+++||||+|+||+++++.|+++|++|++++|+++..++....    ....+.++.+|+++. .+++.       +
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~   82 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE   82 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999998765543211    223567888999752 22333       2


Q ss_pred             Hh-cCCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCc
Q 022216          131 AI-GDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       131 ~~-~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                      .+ .. +|+||||||....         +++...+++|+.|++++++++.+    .+.+++|++||....   .      
T Consensus        83 ~~~~~-id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~---~------  152 (239)
T PRK08703         83 ATQGK-LDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE---T------  152 (239)
T ss_pred             HhCCC-CCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc---c------
Confidence            33 44 8999999996421         12344689999999999888743    345799999996421   1      


Q ss_pred             chhhcchhhHHHHHHHHHHHHHHH-------c-CCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHh
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIRK-------S-GINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~~-------~-~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                         +......|+.+|.+.+.+.+.       . +++++.|+||++.+++.....  .. . ....+..++|++..++.++
T Consensus       153 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~  225 (239)
T PRK08703        153 ---PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH--PG-E-AKSERKSYGDVLPAFVWWA  225 (239)
T ss_pred             ---CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC--CC-C-CccccCCHHHHHHHHHHHh
Confidence               112245788999998876531       2 699999999999998754321  11 1 1224678999999997666


Q ss_pred             cCCCCCCcEE
Q 022216          269 LHPESSYKVV  278 (301)
Q Consensus       269 ~~~~~~~~~~  278 (301)
                      . +...+.+.
T Consensus       226 ~-~~~~~~~g  234 (239)
T PRK08703        226 S-AESKGRSG  234 (239)
T ss_pred             C-ccccCcCC
Confidence            5 43344333

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.86  E-value=4.2e-21  Score=165.11  Aligned_cols=200  Identities=16%  Similarity=0.141  Sum_probs=137.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhccccCCCCeEEEEccCCCChHhHHHHhcC--------CC-
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--------DS-  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--------~~-  136 (301)
                      |++|||||+|+||++++++|+++|++|++++|++ +.+.++......+++++.+|++| .+++.+.++.        .. 
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~   80 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQD-VHELETNFNEILSSIQEDNVS   80 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCC-HHHHHHHHHHHHHhcCcccCC
Confidence            6899999999999999999999999999999987 33333332234578899999999 7677665543        01 


Q ss_pred             -CEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----Hc-CCCEEEEecccccccccCCCCCCcchhhc
Q 022216          137 -EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KR-GVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       137 -d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~-~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       +++|||||....         +++...+++|+.+...+++++.    +. +.++||++||...+.            +.
T Consensus        81 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~  148 (251)
T PRK06924         81 SIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN------------PY  148 (251)
T ss_pred             ceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC------------CC
Confidence             278999986422         2345668899999877777663    32 346899999975421            12


Q ss_pred             chhhHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCceeeccc----------cccccCCCCHHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNIIMETE----------DTLYEGTISRDQVAE  262 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~~~~~----------~~~~~~~v~~~Dva~  262 (301)
                      .....|+.+|.+.+.+.+         ..+++++.|+||++.+++..........          ......+.+++|+|+
T Consensus       149 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~  228 (251)
T PRK06924        149 FGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKEEGKLLSPEYVAK  228 (251)
T ss_pred             CCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHhhcCCcCCHHHHHH
Confidence            335789999999987653         2479999999999988753210000000          001124689999999


Q ss_pred             HHHHHhcCC-CCCCcEEE
Q 022216          263 VAVEALLHP-ESSYKVVE  279 (301)
Q Consensus       263 ~~~~~l~~~-~~~~~~~~  279 (301)
                      .++.++..+ ...++.+.
T Consensus       229 ~~~~l~~~~~~~~G~~~~  246 (251)
T PRK06924        229 ALRNLLETEDFPNGEVID  246 (251)
T ss_pred             HHHHHHhcccCCCCCEee
Confidence            998888762 23344433

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.86  E-value=2.7e-21  Score=172.51  Aligned_cols=173  Identities=17%  Similarity=0.239  Sum_probs=124.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +++|+++||||+||||++++++|+++|++|++++|+.++.++....   ...++.++.+|++| .+++.+.+..      
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~   82 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD-LDSVRRFVDDFRALGK   82 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC-HHHHHHHHHHHHHhCC
Confidence            3589999999999999999999999999999999987765543321   23468899999999 7766665532      


Q ss_pred             CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHH----cC--CCEEEEecccccccccC-C---CCCC
Q 022216          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----RG--VNRFILISSILVNGAAM-G---QILN  195 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~----~~--~~~iV~~SS~~~~~~~~-~---~~~~  195 (301)
                      ++|+||||||+...         ++++.++++|+.|++++++++.+    .+  .+|||++||...+.... +   .+..
T Consensus        83 ~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~  162 (322)
T PRK07453         83 PLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAP  162 (322)
T ss_pred             CccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCc
Confidence            49999999996321         23566789999999999888743    22  35999999987653210 0   0000


Q ss_pred             c-------------------chhhcchhhHHHHHHHHHHHHH----HH----cCCcEEEEecCccc-CCC
Q 022216          196 P-------------------AYIFLNVFGLTLIAKLQAEQYI----RK----SGINYTIIRPGGLR-NEP  237 (301)
Q Consensus       196 ~-------------------~~~~~~~~~~y~~sK~~~e~~~----~~----~~i~~~~irpg~v~-~~~  237 (301)
                      .                   ...+..+...|+.||++.+.+.    ++    .|++++.++||+++ ++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~  232 (322)
T PRK07453        163 ADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPL  232 (322)
T ss_pred             cchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcc
Confidence            0                   0012345678999999875433    22    47999999999996 444

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.86  E-value=4e-21  Score=164.64  Aligned_cols=204  Identities=15%  Similarity=0.150  Sum_probs=137.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      +++|||||+|+||++++++|+++|++|+++ .|+.++..+...   ....++.++++|++| .+++.+++.+      ++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~~~~~~~i   80 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISD-ENQVVAMFTAIDQHDEPL   80 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCC-HHHHHHHHHHHHHhCCCC
Confidence            689999999999999999999999999875 455544333221   123468889999999 7666665542      48


Q ss_pred             CEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc-------CCCEEEEecccccccccCCCCCCcchhh
Q 022216          137 EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR-------GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       137 d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~-------~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      |+||||||....         +++...+++|+.++.++++++...       ..++||++||...+....+         
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~---------  151 (247)
T PRK09730         81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPG---------  151 (247)
T ss_pred             CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCC---------
Confidence            999999996422         123467899999999888876432       1357999999864422111         


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                        .+..|+.+|...+.+++       +.++++++|+||.++|+.........     ..........+++|+|++++.++
T Consensus       152 --~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~  229 (247)
T PRK09730        152 --EYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQPEEVAQAIVWLL  229 (247)
T ss_pred             --cccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence              12357888988876553       35899999999999998643211000     00011112348999999997766


Q ss_pred             cCCC--CCCcEEEeec
Q 022216          269 LHPE--SSYKVVEIIS  282 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~  282 (301)
                      ..+.  ..++.+++.+
T Consensus       230 ~~~~~~~~g~~~~~~g  245 (247)
T PRK09730        230 SDKASYVTGSFIDLAG  245 (247)
T ss_pred             ChhhcCccCcEEecCC
Confidence            5432  3455565554

>PRK08017 oxidoreductase; Provisional

Probab=99.86  E-value=9.4e-21  Score=163.36  Aligned_cols=191  Identities=20%  Similarity=0.250  Sum_probs=137.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CCCCEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDSEAV  139 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~~d~V  139 (301)
                      |+|+||||+|+||.++++.|+++|++|+++.|+.++.+....   .++..+.+|++| .+++.+.+.       +++|.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~~~~~i   78 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS---LGFTGILLDLDD-PESVERAADEVIALTDNRLYGL   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh---CCCeEEEeecCC-HHHHHHHHHHHHHhcCCCCeEE
Confidence            689999999999999999999999999999998877654432   357889999999 655544332       138999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHH----HHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNL----VEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l----~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |||||....        ++++..+++|+.|+.++    ++++++.+.+++|++||...+..            ......|
T Consensus        79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~~~~Y  146 (256)
T PRK08017         79 FNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLIS------------TPGRGAY  146 (256)
T ss_pred             EECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccC------------CCCccHH
Confidence            999986431        13446789999998876    45556667789999999753311            1224678


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      +.+|...|.+.+       ..++++++++||.+.++.........      ........+++++|+++++..++..+..
T Consensus       147 ~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~  225 (256)
T PRK08017        147 AASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVPKLRHALESPKP  225 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhcccchhhccchhhhHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence            999999986542       46899999999999876433211100      0000112468999999999999877653

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.86  E-value=7.6e-21  Score=168.11  Aligned_cols=199  Identities=16%  Similarity=0.092  Sum_probs=133.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc----------hhhhc---cccCCCCeEEEEccCCCChHhHH
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD----------KAKTT---LSKDNPSLQIVKADVTEGSAKLS  129 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~----------~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~  129 (301)
                      ++++|+++||||+++||++++++|++.|++|++++|+..          ..++.   .......+.++++|++| .+++.
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~   83 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLV-PEQVR   83 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCC-HHHHH
Confidence            467899999999999999999999999999999999742          22221   11123457889999999 65555


Q ss_pred             HHhcC------CCCEEEEcc-CCC------C------CCCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccc
Q 022216          130 EAIGD------DSEAVVCAT-GFQ------P------GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVN  186 (301)
Q Consensus       130 ~~~~~------~~d~Vi~~A-g~~------~------~~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~  186 (301)
                      +++..      ++|++|||| |..      .      .++|...+++|+.+.+.+++++.    +.+.++||++||....
T Consensus        84 ~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~  163 (305)
T PRK08303         84 ALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAE  163 (305)
T ss_pred             HHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccc
Confidence            44422      399999999 742      1      02344567899999998888873    3334799999996431


Q ss_pred             cccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----e-c--cccccc
Q 022216          187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----M-E--TEDTLY  251 (301)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~-~--~~~~~~  251 (301)
                      -....         ......|..+|.+...+.+       ..||+++.|.||++.+++......     . .  ......
T Consensus       164 ~~~~~---------~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~p~~  234 (305)
T PRK08303        164 YNATH---------YRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWRDALAKEPHF  234 (305)
T ss_pred             ccCcC---------CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchhhhhcccccc
Confidence            10000         1123468888888876553       368999999999999885321100     0 0  001111


Q ss_pred             cCCCCHHHHHHHHHHHhcCC
Q 022216          252 EGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       252 ~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ..+..++|+|++++.++..+
T Consensus       235 ~~~~~peevA~~v~fL~s~~  254 (305)
T PRK08303        235 AISETPRYVGRAVAALAADP  254 (305)
T ss_pred             ccCCCHHHHHHHHHHHHcCc
Confidence            22347999999997666544

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.86  E-value=8e-21  Score=163.09  Aligned_cols=190  Identities=17%  Similarity=0.198  Sum_probs=136.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCC-hHh-------HHH
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEG-SAK-------LSE  130 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~-~~~-------~~~  130 (301)
                      .+++|+||||||+|+||.+++++|+++|++|++++|+.++.+++..    ....++.++.+|+++. .++       +.+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            4468999999999999999999999999999999998766544321    1234677888888631 333       333


Q ss_pred             HhcCCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcc
Q 022216          131 AIGDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       131 ~~~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                      .+.. +|+||||||....         ++++..+++|+.++.++++++.    +.+.++||++||...+...        
T Consensus        89 ~~~~-id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~--------  159 (247)
T PRK08945         89 QFGR-LDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGR--------  159 (247)
T ss_pred             HhCC-CCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCC--------
Confidence            3445 9999999986422         2345678899999999888873    4567899999997643211        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhc
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                          .....|+.+|.+.+.+++       ..+++++.++||.+.+++....+.  .  .....+..++|+++.++.++.
T Consensus       160 ----~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~  230 (247)
T PRK08945        160 ----ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAFP--G--EDPQKLKTPEDIMPLYLYLMG  230 (247)
T ss_pred             ----CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhcC--c--ccccCCCCHHHHHHHHHHHhC
Confidence                123468899998887654       247999999999998875332211  1  112346789999999987664

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.86  E-value=7.2e-21  Score=164.52  Aligned_cols=206  Identities=17%  Similarity=0.175  Sum_probs=145.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++|+++||||+|+||++++++|+++|++ |++++|+.++.....   ......+.++.+|++| .+++.+.+..     
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            46899999999999999999999999998 999999876544221   1134567889999999 6666665432     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||....        +++..++++|+.++.++++++.+    .+ .+++|++||...++..           
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-----------  151 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-----------  151 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC-----------
Confidence             39999999996432        22345689999999999988743    22 3689999998765422           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCC---ceee-------c-cccccccCCCCHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTG---NIIM-------E-TEDTLYEGTISRDQVAE  262 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~---~~~~-------~-~~~~~~~~~v~~~Dva~  262 (301)
                       .....|+.+|...|.+.+       ..+++++.|+||++.+++...   .+..       . .....+..+++++|+|+
T Consensus       152 -~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  230 (260)
T PRK06198        152 -PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQPFGRLLDPDEVAR  230 (260)
T ss_pred             -CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccCCccCCcCHHHHHH
Confidence             124678899999887654       257999999999999886321   1000       0 00112234679999999


Q ss_pred             HHHHHhcCCC--CCCcEEEeec
Q 022216          263 VAVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       263 ~~~~~l~~~~--~~~~~~~v~~  282 (301)
                      +++.++..+.  ..++++.+.+
T Consensus       231 ~~~~l~~~~~~~~~G~~~~~~~  252 (260)
T PRK06198        231 AVAFLLSDESGLMTGSVIDFDQ  252 (260)
T ss_pred             HHHHHcChhhCCccCceEeECC
Confidence            9987765432  2455555554

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.86  E-value=2.3e-21  Score=157.07  Aligned_cols=215  Identities=20%  Similarity=0.207  Sum_probs=149.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++||++++||+.||||++++++|+++|..+.++..+.+..+....    .+...+.|+++|+++ ..+++++|+.    
T Consensus         2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~-~~~~~~~f~ki~~~   80 (261)
T KOG4169|consen    2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTN-RGDLEAAFDKILAT   80 (261)
T ss_pred             cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEecccc-HHHHHHHHHHHHHH
Confidence            4579999999999999999999999999988888777666443221    145788999999999 7666666643    


Q ss_pred             --CCCEEEEccCCCCCCCCCCceeeehHHHHHHHH----HHH-HcC--CCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          135 --DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVE----ACR-KRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~----a~~-~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                        .+|++||+||+..+.+|+.++.+|+.|..+-..    .+. +.|  .+-||++||...   ..+-|..+-|.+++.. 
T Consensus        81 fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~G---L~P~p~~pVY~AsKaG-  156 (261)
T KOG4169|consen   81 FGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAG---LDPMPVFPVYAASKAG-  156 (261)
T ss_pred             hCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccc---cCccccchhhhhcccc-
Confidence              499999999999999999999999998665444    443 332  368999999862   2222333444433321 


Q ss_pred             HHHHHHH-HHHHHHHHcCCcEEEEecCcccCCCCCCc----eeeccccc-----cccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          206 LTLIAKL-QAEQYIRKSGINYTIIRPGGLRNEPPTGN----IIMETEDT-----LYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       206 ~y~~sK~-~~e~~~~~~~i~~~~irpg~v~~~~~~~~----~~~~~~~~-----~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      .-+.++. +-+.+.++.|++++.+.||.+.+.....-    ..+..++.     ...+..++.++|.-++.+++.+. .+
T Consensus       157 VvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~~~~q~~~~~a~~~v~aiE~~~-NG  235 (261)
T KOG4169|consen  157 VVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALERAPKQSPACCAINIVNAIEYPK-NG  235 (261)
T ss_pred             eeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHHcccCCHHHHHHHHHHHHhhcc-CC
Confidence            1122222 23456677899999999999887642211    11111110     11245788999999999999865 57


Q ss_pred             cEEEeecC
Q 022216          276 KVVEIISR  283 (301)
Q Consensus       276 ~~~~v~~~  283 (301)
                      .+|-+..+
T Consensus       236 aiw~v~~g  243 (261)
T KOG4169|consen  236 AIWKVDSG  243 (261)
T ss_pred             cEEEEecC
Confidence            77777664

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.86  E-value=6.2e-21  Score=163.75  Aligned_cols=204  Identities=18%  Similarity=0.169  Sum_probs=135.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +|+||||||+|+||+++++.|+++|++|+++.+ +++..+...   .....++.++.+|++| .+++.+++..      +
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   80 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVAN-EADVIAMFDAVQSAFGR   80 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCC-HHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999987654 444333221   1134578999999999 6666554431      3


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc----C---CCEEEEecccccccccCCCCCCcchh
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR----G---VNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~----~---~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                      +|+||||||....         +++..++++|+.++.++++++.+.    +   .++||++||...+...   +      
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~---~------  151 (248)
T PRK06947         81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS---P------  151 (248)
T ss_pred             CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC---C------
Confidence            9999999996432         123456889999999988665321    1   2479999997643111   1      


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc--eee---ccccccccCCCCHHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN--IIM---ETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~--~~~---~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                        ..+..|+.+|.+.+.+.+       ..|+++++|+||++.+++....  ...   ...........+++|+|+.++.+
T Consensus       152 --~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~~l  229 (248)
T PRK06947        152 --NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEADEVAETIVWL  229 (248)
T ss_pred             --CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence              012458889988876543       3589999999999999864321  000   00011112246899999999877


Q ss_pred             hcCCC--CCCcEEEee
Q 022216          268 LLHPE--SSYKVVEII  281 (301)
Q Consensus       268 l~~~~--~~~~~~~v~  281 (301)
                      +.++.  ..++.+.+.
T Consensus       230 ~~~~~~~~~G~~~~~~  245 (248)
T PRK06947        230 LSDAASYVTGALLDVG  245 (248)
T ss_pred             cCccccCcCCceEeeC
Confidence            76543  345555443

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.86  E-value=9.9e-21  Score=184.40  Aligned_cols=191  Identities=21%  Similarity=0.264  Sum_probs=144.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      .+++|+++||||+|+||++++++|+++|++|++++|+++.+++...   ....++.++.+|++| .+++.+++..     
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~  446 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTD-SAAVDHTVKDILAEH  446 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999998876554432   124578899999999 7666665542     


Q ss_pred             -CCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 -DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                       ++|+||||||....          +++...+++|+.|+.++++++    ++.+.++||++||.+.+...          
T Consensus       447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  516 (657)
T PRK07201        447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNA----------  516 (657)
T ss_pred             CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC----------
Confidence             39999999996421          134456789999998887776    44566899999999766422          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                        .....|+.+|.+.+.+.+       ..|+++++|+||++.|++.......     .....++++++|+.++..+...
T Consensus       517 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~~~-----~~~~~~~~~~~a~~i~~~~~~~  588 (657)
T PRK07201        517 --PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTKRY-----NNVPTISPEEAADMVVRAIVEK  588 (657)
T ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccccc-----cCCCCCCHHHHHHHHHHHHHhC
Confidence              124568899998887653       3689999999999999875432111     1123578999999999887654

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.2e-20  Score=164.38  Aligned_cols=192  Identities=16%  Similarity=0.191  Sum_probs=133.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      |+++||||+|+||.++++.|+++|++|++++|+.+..++...+    ......++.+|++| .+++.+.+..      ++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISD-YDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC-HHHHHHHHHHHHHhcCCC
Confidence            5799999999999999999999999999999987655443211    12234567899999 6655544332      38


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----Hc-CCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KR-GVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~-~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      |+||||||....        ++++..+++|+.++.++++++.    +. ..++||++||...+.   +.+         .
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~---~~~---------~  147 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV---ALP---------W  147 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC---CCC---------C
Confidence            999999986432        2345678999999999999974    22 246999999975321   111         1


Q ss_pred             hhHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCCCceeec---cc-------cccccCCCCHHHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTGNIIME---TE-------DTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~~~~~~~---~~-------~~~~~~~v~~~Dva~~~~~  266 (301)
                      ...|+.+|.+.+.+.       ..+++++++|+||.+.++.........   ..       .......++++|+|+.++.
T Consensus       148 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~  227 (272)
T PRK07832        148 HAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDRFRGHAVTPEKAAEKILA  227 (272)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHH
Confidence            345777887666443       247899999999999988643210000   00       0112235899999999999


Q ss_pred             HhcCC
Q 022216          267 ALLHP  271 (301)
Q Consensus       267 ~l~~~  271 (301)
                      ++.++
T Consensus       228 ~~~~~  232 (272)
T PRK07832        228 GVEKN  232 (272)
T ss_pred             HHhcC
Confidence            98654

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.86  E-value=1e-20  Score=166.34  Aligned_cols=207  Identities=15%  Similarity=0.127  Sum_probs=135.9

Q ss_pred             hcccCCeEEEEcC--CchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc------------C----CCCeEEEEccC--
Q 022216           62 VSVKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------------D----NPSLQIVKADV--  121 (301)
Q Consensus        62 ~~~~~~~vlVtGa--tG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~------------~----~~~~~~~~~Dl--  121 (301)
                      +++++|++|||||  ++|||++++++|+++|++|++ .|+.+.++++...            .    ......+.+|+  
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   83 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF   83 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence            4578999999999  899999999999999999998 7766554433211            0    01146788898  


Q ss_pred             CCCh-----------------HhHHHH-------hcCCCCEEEEccCCCC----------CCCCCCceeeehHHHHHHHH
Q 022216          122 TEGS-----------------AKLSEA-------IGDDSEAVVCATGFQP----------GWDLFAPWKVDNFGTVNLVE  167 (301)
Q Consensus       122 ~~~~-----------------~~~~~~-------~~~~~d~Vi~~Ag~~~----------~~~~~~~~~~N~~g~~~l~~  167 (301)
                      +++.                 +++.++       ++. +|+||||||...          .++|+.++++|+.+.+.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~-iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~  162 (303)
T PLN02730         84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGS-IDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ  162 (303)
T ss_pred             CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCC-CCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence            3311                 133333       344 999999997421          13577789999999999999


Q ss_pred             HHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------H-cCCcEEEEecCcccCCC
Q 022216          168 ACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEP  237 (301)
Q Consensus       168 a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~-~~i~~~~irpg~v~~~~  237 (301)
                      ++...  ..++||++||.....   ..   +.     ....|..+|.+.+.+.+       . +||+++.|.||++.+++
T Consensus       163 ~~~p~m~~~G~II~isS~a~~~---~~---p~-----~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~  231 (303)
T PLN02730        163 HFGPIMNPGGASISLTYIASER---II---PG-----YGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRA  231 (303)
T ss_pred             HHHHHHhcCCEEEEEechhhcC---CC---CC-----CchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCch
Confidence            87432  127999999986321   11   11     12468899998886553       2 58999999999999987


Q ss_pred             CCCceeec------cccccccCCCCHHHHHHHHHHHhcCCC--CCCcEEEee
Q 022216          238 PTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPE--SSYKVVEII  281 (301)
Q Consensus       238 ~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~  281 (301)
                      ........      ........+..++|+|.+++.++....  ..++++.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l~vd  283 (303)
T PLN02730        232 AKAIGFIDDMIEYSYANAPLQKELTADEVGNAAAFLASPLASAITGATIYVD  283 (303)
T ss_pred             hhcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEEC
Confidence            54310000      011111335689999999966554222  234445443

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2e-20  Score=160.38  Aligned_cols=182  Identities=16%  Similarity=0.159  Sum_probs=130.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+++|+++||||+|+||++++++|+++|++|++++|+.....+..  .......+.+|++| .+++.+.+++ +|++||
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~--~~~~~~~~~~D~~~-~~~~~~~~~~-iDilVn   85 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESN--DESPNEWIKWECGK-EESLDKQLAS-LDVLIL   85 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhh--ccCCCeEEEeeCCC-HHHHHHhcCC-CCEEEE
Confidence            3567899999999999999999999999999999998863221111  11123678899999 8888888888 999999


Q ss_pred             ccCCCC-----CCCCCCceeeehHHHHHHHHHHHHc-------CCCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          142 ATGFQP-----GWDLFAPWKVDNFGTVNLVEACRKR-------GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       142 ~Ag~~~-----~~~~~~~~~~N~~g~~~l~~a~~~~-------~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      |||...     .++++..+++|+.|+.++++++.+.       +.+.++..||.+...   . +         ....|..
T Consensus        86 nAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~---~-~---------~~~~Y~a  152 (245)
T PRK12367         86 NHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ---P-A---------LSPSYEI  152 (245)
T ss_pred             CCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC---C-C---------CCchhHH
Confidence            999643     2356678899999999999987431       122344444433111   0 0         1245888


Q ss_pred             HHHHHHHHH----------HHcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          210 AKLQAEQYI----------RKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       210 sK~~~e~~~----------~~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +|.+.+.+.          ...++.++.+.||.+.+++..            ...++++|+|+.++.++..+.
T Consensus       153 SKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~~------------~~~~~~~~vA~~i~~~~~~~~  213 (245)
T PRK12367        153 SKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELNP------------IGIMSADFVAKQILDQANLGL  213 (245)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccCc------------cCCCCHHHHHHHHHHHHhcCC
Confidence            888864221          136899999999998776421            125789999999999987654

>PRK07069 short chain dehydrogenase; Validated

Probab=99.85  E-value=1.6e-20  Score=161.37  Aligned_cols=190  Identities=14%  Similarity=0.091  Sum_probs=130.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-Cchhhhcccc----C-CCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTLSK----D-NPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++||||+|+||+++++.|+++|++|++++|+ .+.+++....    . ...+..+.+|++| .+++.+++..      +
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   79 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTD-EAQWQALLAQAADAMGG   79 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence            38999999999999999999999999999998 4444332211    1 1234568899999 6666554432      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehH----HHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNF----GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~----g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        +++..++++|+.    ++..+++++++.+.++||++||...+....            .
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~------------~  147 (251)
T PRK07069         80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEP------------D  147 (251)
T ss_pred             ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCC------------C
Confidence            9999999996532        134556788998    556666667766778999999987654321            1


Q ss_pred             hhHHHHHHHHHHHHHHH---------cCCcEEEEecCcccCCCCCCceee-cc--------ccccccCCCCHHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEPPTGNIIM-ET--------EDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~~---------~~i~~~~irpg~v~~~~~~~~~~~-~~--------~~~~~~~~v~~~Dva~~~~  265 (301)
                      +..|+.+|.+.+.+.+.         .+++++.|+||++.+++....... ..        .......+.+++|+|++++
T Consensus       148 ~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~  227 (251)
T PRK07069        148 YTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVPLGRLGEPDDVAHAVL  227 (251)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCCCCCCcCHHHHHHHHH
Confidence            34577888877765531         258999999999999865321100 00        0111123568999999997


Q ss_pred             HHhcC
Q 022216          266 EALLH  270 (301)
Q Consensus       266 ~~l~~  270 (301)
                      .++..
T Consensus       228 ~l~~~  232 (251)
T PRK07069        228 YLASD  232 (251)
T ss_pred             HHcCc
Confidence            75543

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.4e-20  Score=156.33  Aligned_cols=180  Identities=22%  Similarity=0.230  Sum_probs=132.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi~~Ag  144 (301)
                      |+++||||+|+||++++++|+++ ++|++++|+..              .+++|++| .+++.+.+..  ++|+||||||
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------~~~~D~~~-~~~~~~~~~~~~~id~lv~~ag   64 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------DVQVDITD-PASIRALFEKVGKVDAVVSAAG   64 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------ceEecCCC-hHHHHHHHHhcCCCCEEEECCC
Confidence            47999999999999999999999 99999888643              36799999 7777776653  4999999999


Q ss_pred             CCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHH
Q 022216          145 FQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       145 ~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      ....        ++|...+++|+.++.++++++.+.  +.++|+++||.....   +.         .....|..+|.+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~---~~---------~~~~~Y~~sK~a~  132 (199)
T PRK07578         65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE---PI---------PGGASAATVNGAL  132 (199)
T ss_pred             CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC---CC---------CCchHHHHHHHHH
Confidence            6431        245566789999999999998542  336899999875321   11         1245678888887


Q ss_pred             HHHHH------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEe
Q 022216          215 EQYIR------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEI  280 (301)
Q Consensus       215 e~~~~------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v  280 (301)
                      +.+.+      ..|++++.|+||++.+++....-..     ....+++++|+|+.++.++... ..++++++
T Consensus       133 ~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~-~~g~~~~~  198 (199)
T PRK07578        133 EGFVKAAALELPRGIRINVVSPTVLTESLEKYGPFF-----PGFEPVPAARVALAYVRSVEGA-QTGEVYKV  198 (199)
T ss_pred             HHHHHHHHHHccCCeEEEEEcCCcccCchhhhhhcC-----CCCCCCCHHHHHHHHHHHhccc-eeeEEecc
Confidence            76543      3589999999999988753211001     1124689999999998888754 35566654

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.85  E-value=3.5e-20  Score=154.83  Aligned_cols=214  Identities=15%  Similarity=0.102  Sum_probs=148.5

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-CCCCEEEEccCCCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-DDSEAVVCATGFQP  147 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~~~d~Vi~~Ag~~~  147 (301)
                      |+||||||+||++++.+|.+.|++|+++.|++.+..+...   ..+.       . -+.+.+... + +|+|||.||..-
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~---~~v~-------~-~~~~~~~~~~~-~DavINLAG~~I   68 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH---PNVT-------L-WEGLADALTLG-IDAVINLAGEPI   68 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcC---cccc-------c-cchhhhcccCC-CCEEEECCCCcc
Confidence            6899999999999999999999999999999887554331   1221       1 122333333 5 999999999643


Q ss_pred             CCC-CCC-----ceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH-
Q 022216          148 GWD-LFA-----PWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-  218 (301)
Q Consensus       148 ~~~-~~~-----~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-  218 (301)
                      .+. |..     ..+.-+..|..|.++..+.  +.+.+|.-|.+..||........++.++.+.+..  .--...|+.. 
T Consensus        69 ~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~Fla--~lc~~WE~~a~  146 (297)
T COG1090          69 AERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLA--QLCQDWEEEAL  146 (297)
T ss_pred             ccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCCChHH--HHHHHHHHHHh
Confidence            322 322     2345567788999988744  4567888888888998876665555433332221  1222223333 


Q ss_pred             --HHcCCcEEEEecCcccCCCCCC--ce------e---eccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCC
Q 022216          219 --RKSGINYTIIRPGGLRNEPPTG--NI------I---METEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVD  285 (301)
Q Consensus       219 --~~~~i~~~~irpg~v~~~~~~~--~~------~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~  285 (301)
                        ++.|.|++++|.|.|.++...-  .+      .   .-+....|.+|||+||+.+++..++++... ...||+..+  
T Consensus       147 ~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~~~~l-sGp~N~taP--  223 (297)
T COG1090         147 QAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLENEQL-SGPFNLTAP--  223 (297)
T ss_pred             hhhhcCceEEEEEEEEEecCCCcchhhhcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHHhCcCC-CCcccccCC--
Confidence              3468999999999999864221  10      0   123355667899999999999888887764 448999995  


Q ss_pred             CCCcCHHHHHHHhhc
Q 022216          286 APKRSYEDLFGSIKQ  300 (301)
Q Consensus       286 ~~~~s~~e~~~~i~~  300 (301)
                       .+++.+|+.+.+++
T Consensus       224 -~PV~~~~F~~al~r  237 (297)
T COG1090         224 -NPVRNKEFAHALGR  237 (297)
T ss_pred             -CcCcHHHHHHHHHH
Confidence             99999999998875

>TIGR02415 23BDH acetoin reductases

Probab=99.85  E-value=1.8e-20  Score=161.37  Aligned_cols=192  Identities=20%  Similarity=0.200  Sum_probs=135.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      |+++||||+|+||.+++++|++.|++|+++.|+.+..++...   ....++.++.+|++| ++++.+++..      ++|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCCCC
Confidence            589999999999999999999999999999998655443321   134568899999999 7766665432      389


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +||||||....        ++++..+++|+.++..+++++.    +.+ .++||++||.......            ..+
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~  147 (254)
T TIGR02415        80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN------------PIL  147 (254)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC------------CCC
Confidence            99999996432        2345678999999988877764    323 3689999997532211            124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---------cc------ccccccCCCCHHHHHH
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---------ET------EDTLYEGTISRDQVAE  262 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---------~~------~~~~~~~~v~~~Dva~  262 (301)
                      +.|..+|.+.+.+.+       ..++++++|+||.+.+++.......         ..      .......+.+++|+++
T Consensus       148 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  227 (254)
T TIGR02415       148 SAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSEIALGRPSEPEDVAG  227 (254)
T ss_pred             cchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhhCCCCCCCCHHHHHH
Confidence            678889998887654       2489999999999988753221100         00      0011123678999999


Q ss_pred             HHHHHhcCC
Q 022216          263 VAVEALLHP  271 (301)
Q Consensus       263 ~~~~~l~~~  271 (301)
                      ++..++..+
T Consensus       228 ~~~~l~~~~  236 (254)
T TIGR02415       228 LVSFLASED  236 (254)
T ss_pred             HHHhhcccc
Confidence            986666544

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=4.4e-20  Score=157.46  Aligned_cols=205  Identities=17%  Similarity=0.093  Sum_probs=141.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++++||||||+|+||+++++.|+++|++|++++|++++.+.....  ...++.++++|++| .+++.+.+.+      +
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~   81 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS-TESARNVIEKAAKVLNA   81 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999999999988765543211  12368899999999 6666554432      3


Q ss_pred             CCEEEEccCCCCC------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          136 SEAVVCATGFQPG------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      +|.+||++|....      +++..++++|+.+..++++.+.+.  ..+++|++||......  .         ......|
T Consensus        82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~--~---------~~~~~~Y  150 (238)
T PRK05786         82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK--A---------SPDQLSY  150 (238)
T ss_pred             CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc--C---------CCCchHH
Confidence            8999999985332      123455789999988888887543  2368999999753110  0         1123568


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC--CCCcEE
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE--SSYKVV  278 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~  278 (301)
                      ..+|.+.+.+++       ..++++++|+||+++++...... ...........++++|++++++.++..+.  ..++.+
T Consensus       151 ~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~~-~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~g~~~  229 (238)
T PRK05786        151 AVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPERN-WKKLRKLGDDMAPPEDFAKVIIWLLTDEADWVDGVVI  229 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchhh-hhhhccccCCCCCHHHHHHHHHHHhcccccCccCCEE
Confidence            889988875442       35899999999999997532211 00001111235789999999988886533  245555


Q ss_pred             Eee
Q 022216          279 EII  281 (301)
Q Consensus       279 ~v~  281 (301)
                      .+.
T Consensus       230 ~~~  232 (238)
T PRK05786        230 PVD  232 (238)
T ss_pred             EEC
Confidence            553

>PRK06484 short chain dehydrogenase; Validated

Probab=99.85  E-value=1.1e-20  Score=179.26  Aligned_cols=193  Identities=15%  Similarity=0.157  Sum_probs=139.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      ++|++|||||+++||++++++|+++|++|++++|+.+.+++...+...++.++.+|++| .+++.+++..      ++|+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSD-EAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCC-HHHHHHHHHHHHHHhCCCCE
Confidence            57999999999999999999999999999999999887766554344577889999999 6655554422      3999


Q ss_pred             EEEccCCCC----------CCCCCCceeeehHHHHHHHHHHHH----cCCC-EEEEecccccccccCCCCCCcchhhcch
Q 022216          139 VVCATGFQP----------GWDLFAPWKVDNFGTVNLVEACRK----RGVN-RFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       139 Vi~~Ag~~~----------~~~~~~~~~~N~~g~~~l~~a~~~----~~~~-~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ||||||+..          .++|+.++++|+.+++.+++++.+    .+.+ +||++||.......            ..
T Consensus        83 li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~------------~~  150 (520)
T PRK06484         83 LVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL------------PK  150 (520)
T ss_pred             EEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC------------CC
Confidence            999999631          124567889999999999988843    2333 99999998643211            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------ccccccCCCCHHHHHHHHHHHhc
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ...|..+|.+.+.+.+       ..+++++.|+||.+.+++.........       .......+..++|+|+++..++.
T Consensus       151 ~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~v~~l~~  230 (520)
T PRK06484        151 RTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRIPLGRLGRPEEIAEAVFFLAS  230 (520)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            3568889998886553       358999999999999886432110000       00011234689999999866554


Q ss_pred             C
Q 022216          270 H  270 (301)
Q Consensus       270 ~  270 (301)
                      .
T Consensus       231 ~  231 (520)
T PRK06484        231 D  231 (520)
T ss_pred             c
Confidence            3

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.85  E-value=3.6e-20  Score=157.91  Aligned_cols=201  Identities=17%  Similarity=0.127  Sum_probs=139.8

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhc---cccCCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      +||||++|+||++++++|+++|++|++++|+. +.....   ......++.++.+|++| .+++.+.+.+      ++|+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSD-REDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCCE
Confidence            58999999999999999999999999998875 222221   11133468899999999 7666665532      3899


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      |||+||....        ++++..+++|+.++.++++++.+    .+.++||++||...+...            .....
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~------------~~~~~  147 (239)
T TIGR01830        80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN------------AGQAN  147 (239)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC------------CCCch
Confidence            9999996532        23456788999999999998854    345799999997533211            11356


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHhcCC--CC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEALLHP--ES  273 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~~--~~  273 (301)
                      |+.+|.+.+.+.+       ..|+++++++||.+.++........    .........+.+++|+|++++.++..+  ..
T Consensus       148 y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  227 (239)
T TIGR01830       148 YAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKLSEKVKKKILSQIPLGRFGTPEEVANAVAFLASDEASYI  227 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhcChHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCcccCCc
Confidence            7888887765542       3689999999999887643221000    000111234678999999998777543  24


Q ss_pred             CCcEEEeec
Q 022216          274 SYKVVEIIS  282 (301)
Q Consensus       274 ~~~~~~v~~  282 (301)
                      .++.|++.+
T Consensus       228 ~g~~~~~~~  236 (239)
T TIGR01830       228 TGQVIHVDG  236 (239)
T ss_pred             CCCEEEeCC
Confidence            677888765

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.85  E-value=3.1e-20  Score=158.66  Aligned_cols=204  Identities=18%  Similarity=0.179  Sum_probs=136.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      |++|||||+|+||++++++|+++|++|+++.| +....++...   ....++.++.+|++| .+++.+.+.+      ++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS-FESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999888 3333322211   123578899999999 6655554431      39


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++++..+++|+.++..+++++    ++.+.++||++||.....   +.         ..+
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~---~~---------~~~  147 (242)
T TIGR01829        80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK---GQ---------FGQ  147 (242)
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC---CC---------CCc
Confidence            999999986432        234556789999988866665    455668999999975321   11         123


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----eccccccccCCCCHHHHHHHHHHHhcCCC-
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----METEDTLYEGTISRDQVAEVAVEALLHPE-  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-  272 (301)
                      ..|..+|.+.+.+.+       ..+++++.++||++.++.......    ..........+..++|+++++..++.++. 
T Consensus       148 ~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~  227 (242)
T TIGR01829       148 TNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIPVGRLGRPEEIAAAVAFLASEEAG  227 (242)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhc
Confidence            557788886665442       358999999999999886432110    00001112245688999999865554332 


Q ss_pred             -CCCcEEEeecC
Q 022216          273 -SSYKVVEIISR  283 (301)
Q Consensus       273 -~~~~~~~v~~~  283 (301)
                       ..++++.+.++
T Consensus       228 ~~~G~~~~~~gg  239 (242)
T TIGR01829       228 YITGATLSINGG  239 (242)
T ss_pred             CccCCEEEecCC
Confidence             34566666553

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.85  E-value=2.8e-20  Score=180.33  Aligned_cols=208  Identities=18%  Similarity=0.226  Sum_probs=143.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.+..+.....     ....+..+.+|++| .+++.+++..   
T Consensus       411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd-~~~v~~a~~~i~~  489 (676)
T TIGR02632       411 TLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD-EQAVKAAFADVAL  489 (676)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999987665443211     12357789999999 7777666542   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcC-CCEEEEecccccccccCCCCCCcch
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         ++|+||||||....        ++|...+++|+.+.+.+++++    ++.+ .++||++||...+...         
T Consensus       490 ~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~---------  560 (676)
T TIGR02632       490 AYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG---------  560 (676)
T ss_pred             hcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC---------
Confidence               39999999996432        234566789999988877655    3333 3589999997533211         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCC-C-CCcee--------ec--------cccccccC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP-P-TGNII--------ME--------TEDTLYEG  253 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~-~-~~~~~--------~~--------~~~~~~~~  253 (301)
                         .....|+.+|.+.+.+.+       ..|++++.|+||.+.++. . .+...        ..        ........
T Consensus       561 ---~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~r  637 (676)
T TIGR02632       561 ---KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYAKRTLLKR  637 (676)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHHhcCCcCC
Confidence               124689999999987664       258999999999987421 1 11000        00        00112234


Q ss_pred             CCCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          254 TISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++++|+|++++.++....  ..+.++++.++
T Consensus       638 ~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG  669 (676)
T TIGR02632       638 HIFPADIAEAVFFLASSKSEKTTGCIITVDGG  669 (676)
T ss_pred             CcCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence            5889999999976665332  33566666553

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.84  E-value=2.2e-20  Score=159.53  Aligned_cols=189  Identities=19%  Similarity=0.144  Sum_probs=130.2

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      ||||||+|+||.++++.|+++|++|+++.|+.. ..++..   .....++.++.+|++| .+++.+.+..      ++|+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVAD-RVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence            689999999999999999999999998887643 222221   1134578999999999 7666655432      4899


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHHHHHHHH-----HHcCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC-----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~-----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +|||||....        +++..++++|+.+++++++++     ++.+.++||++||...+...   +         ...
T Consensus        80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~---~---------~~~  147 (239)
T TIGR01831        80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGN---R---------GQV  147 (239)
T ss_pred             EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCC---C---------CCc
Confidence            9999996432        245667899999999998876     22345799999997643211   1         124


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc---ccccccCCCCHHHHHHHHHHHhcC
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET---EDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~---~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .|..+|.+.+.+.+       ..|++++.|+||.+.|++.........   .......+..++|+|++++.++..
T Consensus       148 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~  222 (239)
T TIGR01831       148 NYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVEHDLDEALKTVPMNRMGQPAEVASLAGFLMSD  222 (239)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc
Confidence            56677776654332       368999999999999987543211000   001112356899999999765553

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.84  E-value=6.9e-20  Score=154.82  Aligned_cols=181  Identities=19%  Similarity=0.216  Sum_probs=136.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh---cC-CCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI---GD-DSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~-~~d~Vi~  141 (301)
                      +++++||||+|+||++++++|+++|++|++++|+.+..+++..   .++.++.+|++| .+.+.+.+   .+ ++|+|||
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~---~~~~~~~~D~~~-~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA---LGAEALALDVAD-PASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh---ccceEEEecCCC-HHHHHHHHHHhcCCCCCEEEE
Confidence            3689999999999999999999999999999998776655432   356789999999 66666643   22 5999999


Q ss_pred             ccCCCC----------CCCCCCceeeehHHHHHHHHHHHH---cCCCEEEEeccccc-ccccCCCCCCcchhhcchhhHH
Q 022216          142 ATGFQP----------GWDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILV-NGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       142 ~Ag~~~----------~~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~-~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |+|...          .++++..+++|+.+++++++++.+   ...+++|++||... ++....          .+...|
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------~~~~~Y  146 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATG----------TTGWLY  146 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccC----------CCcccc
Confidence            999742          123566889999999999999864   22358999998653 321110          111358


Q ss_pred             HHHHHHHHHHHHH-----cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          208 LIAKLQAEQYIRK-----SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       208 ~~sK~~~e~~~~~-----~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ..+|...+.+++.     .+++++.|+||++.+++...           .+.+..++.+..+..++...
T Consensus       147 ~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~-----------~~~~~~~~~~~~~~~~~~~~  204 (222)
T PRK06953        147 RASKAALNDALRAASLQARHATCIALHPGWVRTDMGGA-----------QAALDPAQSVAGMRRVIAQA  204 (222)
T ss_pred             HHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCC-----------CCCCCHHHHHHHHHHHHHhc
Confidence            8999999877653     47899999999999986432           13578899999988877654

>PRK05599 hypothetical protein; Provisional

Probab=99.84  E-value=3.7e-20  Score=159.00  Aligned_cols=185  Identities=19%  Similarity=0.176  Sum_probs=130.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---C-CCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D-NPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~-~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      |+++||||+++||++++++|+ +|++|++++|+.+++++...+   . ...+.++.+|++| .+++.+++..      ++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD-LDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC-HHHHHHHHHHHHHhcCCC
Confidence            679999999999999999999 599999999998776654321   1 2347889999999 6555544321      49


Q ss_pred             CEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHH----HHcC-CCEEEEecccccccccCCCCCCcchhhcch
Q 022216          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       137 d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~----~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      |++|||||.....        ++...+++|+.+..++++++    ++.+ .++||++||...+-   +.         ..
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~---~~---------~~  146 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR---AR---------RA  146 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc---CC---------cC
Confidence            9999999975321        12234567888887766554    3333 36999999986321   11         12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ...|..+|.+.+.+.+       ..|++++.|.||.+.+++..+..   .  .  .....++|+|+.++..+.++.
T Consensus       147 ~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~~---~--~--~~~~~pe~~a~~~~~~~~~~~  215 (246)
T PRK05599        147 NYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGMK---P--A--PMSVYPRDVAAAVVSAITSSK  215 (246)
T ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCCC---C--C--CCCCCHHHHHHHHHHHHhcCC
Confidence            3567888888765543       36899999999999998643221   0  0  113589999999999888764

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.84  E-value=2.4e-20  Score=162.01  Aligned_cols=202  Identities=17%  Similarity=0.125  Sum_probs=133.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-Cchhhhcccc----CCCCeEEEEccCCCChHhH----HHH------
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTLSK----DNPSLQIVKADVTEGSAKL----SEA------  131 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~----~~~------  131 (301)
                      ++++||||+|+||++++++|+++|++|+++.|+ .+.++++..+    ....+.++.+|++| .+++    .+.      
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSN-SATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCC-chhhHHHHHHHHHHHHH
Confidence            589999999999999999999999999988765 3343332211    22456788999999 5432    222      


Q ss_pred             -hcCCCCEEEEccCCCCC-----C--------------CCCCceeeehHHHHHHHHHHHHc----------CCCEEEEec
Q 022216          132 -IGDDSEAVVCATGFQPG-----W--------------DLFAPWKVDNFGTVNLVEACRKR----------GVNRFILIS  181 (301)
Q Consensus       132 -~~~~~d~Vi~~Ag~~~~-----~--------------~~~~~~~~N~~g~~~l~~a~~~~----------~~~~iV~~S  181 (301)
                       ++. +|+||||||....     .              ++..++++|+.+.+.+++++.+.          +.+++|++|
T Consensus        81 ~~g~-iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~  159 (267)
T TIGR02685        81 AFGR-CDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC  159 (267)
T ss_pred             ccCC-ceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence             244 9999999996321     1              13356899999999999886322          124688888


Q ss_pred             ccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-e-eccccccc-
Q 022216          182 SILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-I-METEDTLY-  251 (301)
Q Consensus       182 S~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-~-~~~~~~~~-  251 (301)
                      |.....            +...+..|+.+|.+.+.+.+       ..|++++.|+||.+.++...... . ........ 
T Consensus       160 s~~~~~------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~~~~~~~~~~~~~~~  227 (267)
T TIGR02685       160 DAMTDQ------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMPFEVQEDYRRKVPLG  227 (267)
T ss_pred             hhhccC------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccchhHHHHHHHhCCCC
Confidence            864211            12235678999999987664       36899999999998765322110 0 00001111 


Q ss_pred             cCCCCHHHHHHHHHHHhcCCC--CCCcEEEeec
Q 022216          252 EGTISRDQVAEVAVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       252 ~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~  282 (301)
                      .....++|+|++++.++..+.  ..++.+.+.+
T Consensus       228 ~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~g  260 (267)
T TIGR02685       228 QREASAEQIADVVIFLVSPKAKYITGTCIKVDG  260 (267)
T ss_pred             cCCCCHHHHHHHHHHHhCcccCCcccceEEECC
Confidence            135689999999987775432  3445555543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.83  E-value=1.1e-19  Score=164.96  Aligned_cols=183  Identities=19%  Similarity=0.229  Sum_probs=134.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .++++|+++||||+|+||++++++|+++|++|++++|+.++..+.......++..+.+|++| .+++.+.+++ +|++||
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd-~~~v~~~l~~-IDiLIn  251 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQ-EAALAELLEK-VDILII  251 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC-HHHHHHHhCC-CCEEEE
Confidence            45678999999999999999999999999999999998766543322223357788999999 8889999988 999999


Q ss_pred             ccCCCCC-----CCCCCceeeehHHHHHHHHHHHH----cCC----CEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          142 ATGFQPG-----WDLFAPWKVDNFGTVNLVEACRK----RGV----NRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       142 ~Ag~~~~-----~~~~~~~~~N~~g~~~l~~a~~~----~~~----~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      |||....     ++++.++++|+.|+.++++++.+    .+.    ..+|++|+.. .    .    +     .....|.
T Consensus       252 nAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~-~----~----~-----~~~~~Y~  317 (406)
T PRK07424        252 NHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAE-V----N----P-----AFSPLYE  317 (406)
T ss_pred             CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccc-c----c----C-----CCchHHH
Confidence            9996432     24567789999999999999732    221    2355555421 0    0    0     0124689


Q ss_pred             HHHHHHHHHH--H--HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          209 IAKLQAEQYI--R--KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       209 ~sK~~~e~~~--~--~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      .+|.+.+.+.  +  +.++.+..+.||.+.+++.            ....+++||+|+.++.++.++.
T Consensus       318 ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~~~------------~~~~~spe~vA~~il~~i~~~~  373 (406)
T PRK07424        318 LSKRALGDLVTLRRLDAPCVVRKLILGPFKSNLN------------PIGVMSADWVAKQILKLAKRDF  373 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEeCCCcCCCC------------cCCCCCHHHHHHHHHHHHHCCC
Confidence            9999987643  2  2466677788887766531            0135799999999999998764

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.83  E-value=2.4e-20  Score=161.01  Aligned_cols=189  Identities=15%  Similarity=0.154  Sum_probs=133.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHH----CCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           68 KIFVAGATGSSGKRIVEQLLA----KGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~----~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++||||+++||.+++++|++    .|++|+++.|+.+.+++...+     ....+.++.+|++| .+++.+.+..    
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~-~~~v~~~~~~~~~~   80 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGA-EAGLEQLLKALREL   80 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCC-HHHHHHHHHHHHhc
Confidence            689999999999999999997    799999999988766543321     23468889999999 7666655532    


Q ss_pred             ------CCCEEEEccCCCCC-----------CCCCCceeeehHHHHHHHHHHHH----c-C-CCEEEEecccccccccCC
Q 022216          135 ------DSEAVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACRK----R-G-VNRFILISSILVNGAAMG  191 (301)
Q Consensus       135 ------~~d~Vi~~Ag~~~~-----------~~~~~~~~~N~~g~~~l~~a~~~----~-~-~~~iV~~SS~~~~~~~~~  191 (301)
                            +.|+||||||....           ++++..+++|+.+++.+++++.+    . + .++||++||...+..   
T Consensus        81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~---  157 (256)
T TIGR01500        81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP---  157 (256)
T ss_pred             cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC---
Confidence                  12699999996321           12345789999999888877632    2 2 358999999864321   


Q ss_pred             CCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--cc-------ccccccCCC
Q 022216          192 QILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--ET-------EDTLYEGTI  255 (301)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--~~-------~~~~~~~~v  255 (301)
                               ...+..|+.+|.+.+.+.+       ..|++++.|.||++.+++.......  ..       .......+.
T Consensus       158 ---------~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (256)
T TIGR01500       158 ---------FKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKAKGKLV  228 (256)
T ss_pred             ---------CCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHhcCCCC
Confidence                     1224678999999887654       2589999999999998864321000  00       001112367


Q ss_pred             CHHHHHHHHHHHhc
Q 022216          256 SRDQVAEVAVEALL  269 (301)
Q Consensus       256 ~~~Dva~~~~~~l~  269 (301)
                      .++|+|+.++.++.
T Consensus       229 ~p~eva~~~~~l~~  242 (256)
T TIGR01500       229 DPKVSAQKLLSLLE  242 (256)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988885

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.83  E-value=2.5e-19  Score=151.69  Aligned_cols=183  Identities=17%  Similarity=0.257  Sum_probs=132.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC----CCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----~~d~Vi~  141 (301)
                      +|+|+||||+|+||+++++.|+++|++|++++|++...++..  ...++.++.+|++| .+++.+.++.    ++|+|||
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~id~vi~   77 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ--ALPGVHIEKLDMND-PASLDQLLQRLQGQRFDLLFV   77 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH--hccccceEEcCCCC-HHHHHHHHHHhhcCCCCEEEE
Confidence            368999999999999999999999999999999987655432  22467888999999 6666665542    5999999


Q ss_pred             ccCCCCC----------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          142 ATGFQPG----------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       142 ~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      |||....          +++...+++|+.++.++++++...   +.++++++||..  +.. +.+      +...+..|+
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~-~~~------~~~~~~~Y~  148 (225)
T PRK08177         78 NAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSV-ELP------DGGEMPLYK  148 (225)
T ss_pred             cCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccc-ccC------CCCCccchH
Confidence            9986421          245668899999999999988532   336889998864  221 110      111235688


Q ss_pred             HHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          209 IAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       209 ~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .+|.+.+.+.+       .++++++.|+||++.+++....           ..++....+.-++..+...
T Consensus       149 ~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~~~~-----------~~~~~~~~~~~~~~~~~~~  207 (225)
T PRK08177        149 ASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDMGGDN-----------APLDVETSVKGLVEQIEAA  207 (225)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCCCCCC-----------CCCCHHHHHHHHHHHHHhC
Confidence            99999987664       2579999999999999874321           1245566666665665544

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.83  E-value=5.4e-20  Score=163.52  Aligned_cols=205  Identities=17%  Similarity=0.215  Sum_probs=138.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +|+++||||+++||++++++|+++| ++|++++|+.++.++....   ....+.++.+|++| .+++.+.+..      +
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~~   81 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGS-LDSVRQFVQQFRESGRP   81 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHHHHHhCCC
Confidence            6799999999999999999999999 9999999987665443221   23467889999999 6655544321      4


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcC--CCEEEEecccccccccCC----CC---
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRG--VNRFILISSILVNGAAMG----QI---  193 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~--~~~iV~~SS~~~~~~~~~----~~---  193 (301)
                      +|++|||||+...         ++++..+++|+.|.+.+++++.    +.+  .++||++||...+.....    .+   
T Consensus        82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~  161 (314)
T TIGR01289        82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL  161 (314)
T ss_pred             CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence            9999999996321         2345678999999999877763    332  369999999976532110    00   


Q ss_pred             CC--------------cchhhcchhhHHHHHHHHHHHHH----HH----cCCcEEEEecCccc-CCCCCCceee-----c
Q 022216          194 LN--------------PAYIFLNVFGLTLIAKLQAEQYI----RK----SGINYTIIRPGGLR-NEPPTGNIIM-----E  245 (301)
Q Consensus       194 ~~--------------~~~~~~~~~~~y~~sK~~~e~~~----~~----~~i~~~~irpg~v~-~~~~~~~~~~-----~  245 (301)
                      ..              ....+..++..|..||++...+.    ++    .|++++.|+||.+. +++.......     .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~~~~  241 (314)
T TIGR01289       162 GDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTLFP  241 (314)
T ss_pred             cccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHHHHH
Confidence            00              00012245677999999965432    22    47999999999994 7664321100     0


Q ss_pred             c-ccccccCCCCHHHHHHHHHHHhcCC
Q 022216          246 T-EDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       246 ~-~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      . ......++.++++.|+.++.++..+
T Consensus       242 ~~~~~~~~~~~~~~~~a~~l~~~~~~~  268 (314)
T TIGR01289       242 PFQKYITKGYVSEEEAGERLAQVVSDP  268 (314)
T ss_pred             HHHHHHhccccchhhhhhhhHHhhcCc
Confidence            0 0000123578999999998877654

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.4e-18  Score=154.81  Aligned_cols=232  Identities=39%  Similarity=0.552  Sum_probs=165.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhcC---CC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGD---DS  136 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~---~~  136 (301)
                      .+.+.++|||+||||.+|+-+++.|+++|+.|+++.|+..+..+...  ........+..|...+.+.+......   ..
T Consensus        75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~  154 (411)
T KOG1203|consen   75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGV  154 (411)
T ss_pred             CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccc
Confidence            34567899999999999999999999999999999999887766542  12344555566665533444444333   14


Q ss_pred             CEEEEccCCCCCC-CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH
Q 022216          137 EAVVCATGFQPGW-DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       137 d~Vi~~Ag~~~~~-~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (301)
                      .+++-|+|..++. |...-+.++..|+.|+++||+..|++|+|++||+..   ....   ..++.......+...|..+|
T Consensus       155 ~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~---~~~~---~~~~~~~~~~~~~~~k~~~e  228 (411)
T KOG1203|consen  155 VIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGG---TKFN---QPPNILLLNGLVLKAKLKAE  228 (411)
T ss_pred             eeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecC---cccC---CCchhhhhhhhhhHHHHhHH
Confidence            5777777765554 345566899999999999999999999999999852   2221   11222222455678899999


Q ss_pred             HHHHHcCCcEEEEecCcccCCCCCCcee-eccccccc---c--CCCCHHHHHHHHHHHhcCCCCCC-cEEEeecCCCCCC
Q 022216          216 QYIRKSGINYTIIRPGGLRNEPPTGNII-METEDTLY---E--GTISRDQVAEVAVEALLHPESSY-KVVEIISRVDAPK  288 (301)
Q Consensus       216 ~~~~~~~i~~~~irpg~v~~~~~~~~~~-~~~~~~~~---~--~~v~~~Dva~~~~~~l~~~~~~~-~~~~v~~~~~~~~  288 (301)
                      +++++.|+++++||||....+....... ....+..+   .  ..++..|+|+.+++++..+...+ .+.++....++..
T Consensus       229 ~~~~~Sgl~ytiIR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~vael~~~all~~~~~~~k~~~~v~~~~gpg  308 (411)
T KOG1203|consen  229 KFLQDSGLPYTIIRPGGLEQDTGGQREVVVDDEKELLTVDGGAYSISRLDVAELVAKALLNEAATFKKVVELVLKPEGPG  308 (411)
T ss_pred             HHHHhcCCCcEEEeccccccCCCCcceecccCccccccccccceeeehhhHHHHHHHHHhhhhhccceeEEeecCCCCCC
Confidence            9999999999999999888754433322 11111111   1  26889999999999998887666 6667777777777


Q ss_pred             cCHHHHHHHhh
Q 022216          289 RSYEDLFGSIK  299 (301)
Q Consensus       289 ~s~~e~~~~i~  299 (301)
                      ..+.++.+.+.
T Consensus       309 ~~~~~l~~~~~  319 (411)
T KOG1203|consen  309 RPYKVLLELFP  319 (411)
T ss_pred             ccHHHHHhhcc
Confidence            77777766543

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.83  E-value=5.8e-20  Score=171.26  Aligned_cols=204  Identities=17%  Similarity=0.105  Sum_probs=140.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc--hhhhccccCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      .++++++|||||+|+||.++++.|+++|++|++++|+..  .+.+...  ..+..++.+|++| .+++.+.+..      
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g  283 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVAN--RVGGTALALDITA-PDAPARIAEHLAERHG  283 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHH--HcCCeEEEEeCCC-HHHHHHHHHHHHHhCC
Confidence            356899999999999999999999999999999888532  2222221  1244678999999 6665554431      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcC----CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~----~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||||+...        ++++.++++|+.++.++++++....    .++||++||.+.+...            .
T Consensus       284 ~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~------------~  351 (450)
T PRK08261        284 GLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN------------R  351 (450)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC------------C
Confidence            39999999996532        3456678899999999999996532    3799999998643211            1


Q ss_pred             hhhHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCCCceee-c---cccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTGNIIM-E---TEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~~~~~~-~---~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ....|..+|...+.+.       +..|++++.|.||.+.+++....... .   .........-.++|+|+++..++ ++
T Consensus       352 ~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~l~~~~~p~dva~~~~~l~-s~  430 (450)
T PRK08261        352 GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAAIPFATREAGRRMNSLQQGGLPVDVAETIAWLA-SP  430 (450)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhccchhHHHHHhhcCCcCCCCCHHHHHHHHHHHh-Ch
Confidence            1356888888766544       24689999999999988654321110 0   00011122346899999997555 44


Q ss_pred             CC---CCcEEEeec
Q 022216          272 ES---SYKVVEIIS  282 (301)
Q Consensus       272 ~~---~~~~~~v~~  282 (301)
                      ..   .++++.+.+
T Consensus       431 ~~~~itG~~i~v~g  444 (450)
T PRK08261        431 ASGGVTGNVVRVCG  444 (450)
T ss_pred             hhcCCCCCEEEECC
Confidence            32   456666654

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.3e-19  Score=146.43  Aligned_cols=215  Identities=16%  Similarity=0.141  Sum_probs=159.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      .|+|||||++|.+|+++++.+.+.|.  +=.++.-+                 -.+|+++ .+..++.|.. ++.+|||.
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s-----------------kd~DLt~-~a~t~~lF~~ekPthVIhl   62 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS-----------------KDADLTN-LADTRALFESEKPTHVIHL   62 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc-----------------ccccccc-hHHHHHHHhccCCceeeeh
Confidence            37899999999999999999999876  32222111                 1389999 8889999987 89999999


Q ss_pred             cCCCCC-----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh----hcchhhHHHHHHHH
Q 022216          143 TGFQPG-----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI----FLNVFGLTLIAKLQ  213 (301)
Q Consensus       143 Ag~~~~-----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~----~~~~~~~y~~sK~~  213 (301)
                      |+....     .....+++.|+.--.|+++.|-+.|++++|+..|.++|.+....|.++...    +....-+|...|..
T Consensus        63 AAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~  142 (315)
T KOG1431|consen   63 AAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRM  142 (315)
T ss_pred             HhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHH
Confidence            975432     234566788988889999999999999999999999999888777655421    22223457777866


Q ss_pred             HH----HHHHHcCCcEEEEecCcccCCCCCC------------------------ceeeccccccccCCCCHHHHHHHHH
Q 022216          214 AE----QYIRKSGINYTIIRPGGLRNEPPTG------------------------NIIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       214 ~e----~~~~~~~i~~~~irpg~v~~~~~~~------------------------~~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      +.    .+..++|..++.+-|.+++||...-                        .+...+.....+.|++.+|+|++++
T Consensus       143 idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i  222 (315)
T KOG1431|consen  143 IDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFI  222 (315)
T ss_pred             HHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHH
Confidence            64    3445789999999999999984221                        1223344444556999999999999


Q ss_pred             HHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          266 EALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       266 ~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++|.+=. .-+..++..+ ..+.+|++|+++++.+
T Consensus       223 ~vlr~Y~-~vEpiils~g-e~~EVtI~e~aeaV~e  255 (315)
T KOG1431|consen  223 WVLREYE-GVEPIILSVG-ESDEVTIREAAEAVVE  255 (315)
T ss_pred             HHHHhhc-CccceEeccC-ccceeEHHHHHHHHHH
Confidence            8886533 4455666664 1249999999998865

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=3.7e-20  Score=143.85  Aligned_cols=196  Identities=14%  Similarity=0.107  Sum_probs=147.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi  140 (301)
                      ++.|+.|+|||+.-+||+++++.|++.|++|+++.|++..+..+..+.+.-+..+.+|+.+ -+.+.+.+..  ++|.++
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~-wea~~~~l~~v~pidgLV   82 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSA-WEALFKLLVPVFPIDGLV   82 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccH-HHHHHHhhcccCchhhhh
Confidence            4579999999999999999999999999999999999999998887666669999999999 7888888766  799999


Q ss_pred             EccCCCC--------CCCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          141 CATGFQP--------GWDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       141 ~~Ag~~~--------~~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      ||||+..        .++++..|++|+.+.+++.|...    ..+ .+.||++||.+..-   ..         .....|
T Consensus        83 NNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R---~~---------~nHtvY  150 (245)
T KOG1207|consen   83 NNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR---PL---------DNHTVY  150 (245)
T ss_pred             ccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc---cc---------CCceEE
Confidence            9999743        35788899999999999888842    223 35799999986321   11         112344


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccc------cCCCCHHHHHHHHHHHhcCC
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLY------EGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~------~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ..+|.+.+.+.+       ..+||++.+.|.-+++.+....+.-+......      ..|-.++++.++++.+|.+.
T Consensus       151 catKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl~rFaEV~eVVnA~lfLLSd~  227 (245)
T KOG1207|consen  151 CATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLKRFAEVDEVVNAVLFLLSDN  227 (245)
T ss_pred             eecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccchhhhCchhhhhHHHHHHhhheeeeecC
Confidence            555555553322       35799999999999999876654433322222      23567899999996555443

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.83  E-value=3.2e-19  Score=151.94  Aligned_cols=194  Identities=15%  Similarity=0.189  Sum_probs=133.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHH---HhcCCCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE---AIGDDSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~~~~~d~Vi~  141 (301)
                      |+|+||||+|+||++++++|+++|  +.|....|+....  .   ...++.++++|++| .+++.+   .+++ +|+|||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~--~---~~~~~~~~~~Dls~-~~~~~~~~~~~~~-id~li~   73 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD--F---QHDNVQWHALDVTD-EAEIKQLSEQFTQ-LDWLIN   73 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc--c---ccCceEEEEecCCC-HHHHHHHHHhcCC-CCEEEE
Confidence            589999999999999999999985  5565555544321  1   23578899999999 665554   4455 999999


Q ss_pred             ccCCCCCC--------------CCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          142 ATGFQPGW--------------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       142 ~Ag~~~~~--------------~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      |||.....              ++...+++|+.+...+++++..    .+.++++++||..  +.....       ...+
T Consensus        74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~~~~-------~~~~  144 (235)
T PRK09009         74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSISDN-------RLGG  144 (235)
T ss_pred             CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--cccccC-------CCCC
Confidence            99975321              1334678999999888888743    3346899998853  111110       0123


Q ss_pred             hhHHHHHHHHHHHHHHH---------cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC--
Q 022216          204 FGLTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE--  272 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~~---------~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--  272 (301)
                      +..|+.+|.+.+.+.+.         .+++++.|.||.+.+++.....   . ......+.+++|+|+.++.++..+.  
T Consensus       145 ~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~~---~-~~~~~~~~~~~~~a~~~~~l~~~~~~~  220 (235)
T PRK09009        145 WYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPFQ---Q-NVPKGKLFTPEYVAQCLLGIIANATPA  220 (235)
T ss_pred             cchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcchh---h-ccccCCCCCHHHHHHHHHHHHHcCChh
Confidence            46788899988876531         4899999999999998754321   1 1112336789999999988887653  


Q ss_pred             CCCcEEEe
Q 022216          273 SSYKVVEI  280 (301)
Q Consensus       273 ~~~~~~~v  280 (301)
                      ..+..+.+
T Consensus       221 ~~g~~~~~  228 (235)
T PRK09009        221 QSGSFLAY  228 (235)
T ss_pred             hCCcEEee
Confidence            23444433

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=4.3e-19  Score=155.76  Aligned_cols=210  Identities=18%  Similarity=0.249  Sum_probs=144.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc-----cCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-----KDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      ..+++++++||||++|||.++|++|+.+|++|+...|+.++.++...     ....++.++++|+++ .+++.+....  
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLss-l~SV~~fa~~~~  109 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSS-LKSVRKFAEEFK  109 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-HHHHHHHHHHHH
Confidence            45578999999999999999999999999999999999866554332     145678889999999 7666654322  


Q ss_pred             ----CCCEEEEccCCCC------CCCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccc--cCCCCCCcch
Q 022216          135 ----DSEAVVCATGFQP------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGA--AMGQILNPAY  198 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~------~~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~--~~~~~~~~~~  198 (301)
                          ++|++|||||+..      .+..+.++.+|..|.+.|.+.+    +.....|||++||... +.  .......+..
T Consensus       110 ~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~~  188 (314)
T KOG1208|consen  110 KKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEKA  188 (314)
T ss_pred             hcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchhc
Confidence                5999999999753      2457889999999998888877    3333379999999864 11  1111111111


Q ss_pred             hhcchhhHHHHHHHHHHHHH----HH--cCCcEEEEecCcccCCCCCCce-eec-cccccccC-CCCHHHHHHHHHHHhc
Q 022216          199 IFLNVFGLTLIAKLQAEQYI----RK--SGINYTIIRPGGLRNEPPTGNI-IME-TEDTLYEG-TISRDQVAEVAVEALL  269 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~----~~--~~i~~~~irpg~v~~~~~~~~~-~~~-~~~~~~~~-~v~~~Dva~~~~~~l~  269 (301)
                      ........|..||.+...+.    ++  .|+.++.++||.+.++...... ... ........ +-++++-|...+.+..
T Consensus       189 ~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r~~~~~~~l~~~l~~~~~ks~~~ga~t~~~~a~  268 (314)
T KOG1208|consen  189 KLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSRVNLLLRLLAKKLSWPLTKSPEQGAATTCYAAL  268 (314)
T ss_pred             cCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceecchHHHHHHHHHHHHHhccCHHHHhhheehhcc
Confidence            11333446999999886443    22  2899999999999998433310 000 00001111 2367888888888887


Q ss_pred             CCCC
Q 022216          270 HPES  273 (301)
Q Consensus       270 ~~~~  273 (301)
                      +|+.
T Consensus       269 ~p~~  272 (314)
T KOG1208|consen  269 SPEL  272 (314)
T ss_pred             Cccc
Confidence            7753

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.81  E-value=5e-19  Score=150.05  Aligned_cols=180  Identities=10%  Similarity=0.006  Sum_probs=127.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh-------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI-------  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-------  132 (301)
                      ++++|+++||||+++||++++++|+++|++|+++.|+.+++++...   .....+..+.+|++| .+++.+.+       
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS-QESIRHLFDAIEQQF   80 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            3568999999999999999999999999999999999877655432   124567788999999 66665443       


Q ss_pred             c-CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcC-CCEEEEecccccccccCCCCCCcc
Q 022216          133 G-DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       133 ~-~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~-~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                      + . +|++|||||....         +++...+++|+.+.+.+++++    ++.+ .++||++||...+      +    
T Consensus        81 g~~-iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------~----  149 (227)
T PRK08862         81 NRA-PDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------Q----  149 (227)
T ss_pred             CCC-CCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC------C----
Confidence            4 4 9999999974321         133446678888888877765    3333 4699999996421      1    


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCH-HHHHHHHHHHhc
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISR-DQVAEVAVEALL  269 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~-~Dva~~~~~~l~  269 (301)
                           .+..|..+|.+.+.+.+       .+|++++.|.||++.++....       ..   .|... +|++.+...++.
T Consensus       150 -----~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~~~~-------~~---~~~~~~~~~~~~~~~l~~  214 (227)
T PRK08862        150 -----DLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANGELD-------AV---HWAEIQDELIRNTEYIVA  214 (227)
T ss_pred             -----CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCCccC-------HH---HHHHHHHHHHhheeEEEe
Confidence                 13557788888776553       468999999999999873211       00   11122 788888755554

>PLN00015 protochlorophyllide reductase

Probab=99.80  E-value=7.2e-19  Score=155.92  Aligned_cols=201  Identities=16%  Similarity=0.230  Sum_probs=133.1

Q ss_pred             EEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcC------CCCEE
Q 022216           70 FVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD------DSEAV  139 (301)
Q Consensus        70 lVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~V  139 (301)
                      +||||+++||.+++++|+++| ++|++..|+.++.++....   ....+.++.+|++| .+++.+++..      ++|+|
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLAS-LDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCC-HHHHHHHHHHHHhcCCCCCEE
Confidence            699999999999999999999 9999999987665443321   23467889999999 7666555431      49999


Q ss_pred             EEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcC--CCEEEEecccccccccC-C--CC----CC--
Q 022216          140 VCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRG--VNRFILISSILVNGAAM-G--QI----LN--  195 (301)
Q Consensus       140 i~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~--~~~iV~~SS~~~~~~~~-~--~~----~~--  195 (301)
                      |||||+...         ++++..+++|+.|.+.+++++    ++.+  .++||++||...+-... +  .+    ..  
T Consensus        80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~  159 (308)
T PLN00015         80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR  159 (308)
T ss_pred             EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence            999996421         234567899999988887776    3333  47999999986541100 0  00    00  


Q ss_pred             --------c------chhhcchhhHHHHHHHHHHHHH----HH----cCCcEEEEecCcc-cCCCCCCceeecc------
Q 022216          196 --------P------AYIFLNVFGLTLIAKLQAEQYI----RK----SGINYTIIRPGGL-RNEPPTGNIIMET------  246 (301)
Q Consensus       196 --------~------~~~~~~~~~~y~~sK~~~e~~~----~~----~~i~~~~irpg~v-~~~~~~~~~~~~~------  246 (301)
                              .      .......+..|..||++.+.+.    ++    .|++++.|+||++ .+++.........      
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~~~~  239 (308)
T PLN00015        160 GLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPF  239 (308)
T ss_pred             hhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHHHHH
Confidence                    0      0011234677999999855332    22    4799999999999 4665432110000      


Q ss_pred             ccccccCCCCHHHHHHHHHHHhcCC
Q 022216          247 EDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       247 ~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .......+.++++.|+.++.++.+.
T Consensus       240 ~~~~~~~~~~pe~~a~~~~~l~~~~  264 (308)
T PLN00015        240 QKYITKGYVSEEEAGKRLAQVVSDP  264 (308)
T ss_pred             HHHHhcccccHHHhhhhhhhhcccc
Confidence            0001123578999999987766543

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.79  E-value=1.4e-18  Score=140.85  Aligned_cols=183  Identities=21%  Similarity=0.314  Sum_probs=129.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEE-EeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAG-VRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~-~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +.+.|+||||++|||..++++|++. |.++++. .|++++..+..   ...+.++++++.|+++ .+++.+...+     
T Consensus         2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~-deS~~~~~~~V~~iV   80 (249)
T KOG1611|consen    2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTC-DESIDNFVQEVEKIV   80 (249)
T ss_pred             CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEeccc-HHHHHHHHHHHHhhc
Confidence            4678999999999999999999977 6666655 45577633222   2257899999999999 6666655432     


Q ss_pred             ---CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCC-----------CEEEEeccccccc
Q 022216          135 ---DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGV-----------NRFILISSILVNG  187 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~-----------~~iV~~SS~~~~~  187 (301)
                         ++|++|+|||+...         ..|..++++|..|...+.|++    ++...           ..||++||.+.. 
T Consensus        81 g~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s-  159 (249)
T KOG1611|consen   81 GSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS-  159 (249)
T ss_pred             ccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc-
Confidence               58999999997532         235678999999988888776    22221           279999998632 


Q ss_pred             ccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHH
Q 022216          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQV  260 (301)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dv  260 (301)
                       ..+       ....++.+|..||.+.-.+.+       +.+|-++.++||||.|++....           ..+++++-
T Consensus       160 -~~~-------~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg~~-----------a~ltveeS  220 (249)
T KOG1611|consen  160 -IGG-------FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGGKK-----------AALTVEES  220 (249)
T ss_pred             -cCC-------CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCCCC-----------cccchhhh
Confidence             111       112336789999999887665       3567789999999999986633           34566665


Q ss_pred             HHHHHHHh
Q 022216          261 AEVAVEAL  268 (301)
Q Consensus       261 a~~~~~~l  268 (301)
                      +.-++..+
T Consensus       221 ts~l~~~i  228 (249)
T KOG1611|consen  221 TSKLLASI  228 (249)
T ss_pred             HHHHHHHH
Confidence            55555444

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.79  E-value=2.8e-17  Score=137.45  Aligned_cols=226  Identities=19%  Similarity=0.106  Sum_probs=170.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh-------ccccCCCCeEEEEccCCCChHhHHHHhcC-CCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-------TLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d  137 (301)
                      +|++||||-||+-|+++++.|++.|++|+++.|+.+....       ..-....++..+.+|++| ...+.+++.. .+|
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD-~~~l~r~l~~v~Pd   80 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTD-SSNLLRILEEVQPD   80 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccc-hHHHHHHHHhcCch
Confidence            5899999999999999999999999999999998543211       111134568899999999 8888888876 799


Q ss_pred             EEEEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCC--CEEEEecccccccccCCCCCCcchhhcchhhHHHHHH
Q 022216          138 AVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV--NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       138 ~Vi~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~--~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (301)
                      -|+|.|+...    .+.+..+.++|-.|+.+|+++.+-.+.  -||...||.-.||.....|.. +..|..|.++|+.+|
T Consensus        81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~-E~TPFyPrSPYAvAK  159 (345)
T COG1089          81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQK-ETTPFYPRSPYAVAK  159 (345)
T ss_pred             hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccc-cCCCCCCCCHHHHHH
Confidence            9999998643    356778889999999999999988753  478889998889877655543 345677889999999


Q ss_pred             HHHHHHH----HHcCCcEEEEecCcccCCCCCCceee-------------------ccccccccCCCCHHHHHHHHHHHh
Q 022216          212 LQAEQYI----RKSGINYTIIRPGGLRNEPPTGNIIM-------------------ETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       212 ~~~e~~~----~~~~i~~~~irpg~v~~~~~~~~~~~-------------------~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      +.+....    +.+|+-.+.=...+-.+|.....++.                   -+.-....+|-+..|-++++...|
T Consensus       160 lYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmL  239 (345)
T COG1089         160 LYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLML  239 (345)
T ss_pred             HHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHHHHHH
Confidence            9987543    35777655544444455543332211                   111222346889999999997777


Q ss_pred             cCCCCCCcEEEeecCCCCCCcCHHHHHHHh
Q 022216          269 LHPESSYKVVEIISRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i  298 (301)
                      +.+.  ...|.+..+   +..|++|+++.-
T Consensus       240 Qq~~--PddyViATg---~t~sVrefv~~A  264 (345)
T COG1089         240 QQEE--PDDYVIATG---ETHSVREFVELA  264 (345)
T ss_pred             ccCC--CCceEEecC---ceeeHHHHHHHH
Confidence            7765  567999996   999999998864

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.78  E-value=1e-17  Score=151.74  Aligned_cols=235  Identities=18%  Similarity=0.197  Sum_probs=160.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC---CeEEEEEeCCchhh------hc---------c---ccCCCCeEEEEccCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAK------TT---------L---SKDNPSLQIVKADVT  122 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G---~~V~~~~r~~~~~~------~~---------~---~~~~~~~~~~~~Dl~  122 (301)
                      +++|+|+|||||||+|+-++++|+..-   -+++++.|......      ..         +   ++...++..+.||+.
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            468999999999999999999999763   37888888753311      00         1   112367889999998


Q ss_pred             CCh-----HhHHHHhcCCCCEEEEccCCCCC-CCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccC---CC
Q 022216          123 EGS-----AKLSEAIGDDSEAVVCATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAM---GQ  192 (301)
Q Consensus       123 ~~~-----~~~~~~~~~~~d~Vi~~Ag~~~~-~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~---~~  192 (301)
                      ++.     ........+ +|+|||+|+.... +..+....+|..|+.++++.|++.. .+-+|++|+..+.-...   ..
T Consensus        90 ~~~LGis~~D~~~l~~e-V~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~  168 (467)
T KOG1221|consen   90 EPDLGISESDLRTLADE-VNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEK  168 (467)
T ss_pred             CcccCCChHHHHHHHhc-CCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccccccc
Confidence            842     444556677 9999999986553 3445667899999999999998874 67899999988651111   00


Q ss_pred             CCC------cc------------hh-----h--cchhhHHHHHHHHHHHHHHH--cCCcEEEEecCcccCCCCCC---c-
Q 022216          193 ILN------PA------------YI-----F--LNVFGLTLIAKLQAEQYIRK--SGINYTIIRPGGLRNEPPTG---N-  241 (301)
Q Consensus       193 ~~~------~~------------~~-----~--~~~~~~y~~sK~~~e~~~~~--~~i~~~~irpg~v~~~~~~~---~-  241 (301)
                      +..      +.            +.     .  ...-+.|..+|..+|+++.+  .+++++|+||+.|.......   + 
T Consensus       169 ~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~~lPivIiRPsiI~st~~EP~pGWi  248 (467)
T KOG1221|consen  169 PYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAENLPLVIIRPSIITSTYKEPFPGWI  248 (467)
T ss_pred             ccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhccCCCeEEEcCCceeccccCCCCCcc
Confidence            000      00            00     0  11235688999999998864  68999999999876642111   1 


Q ss_pred             --------eee----------ccccccccCCCCHHHHHHHHHHHhcC-----CCCCCcEEEeecCCCCCCcCHHHHHHHh
Q 022216          242 --------IIM----------ETEDTLYEGTISRDQVAEVAVEALLH-----PESSYKVVEIISRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       242 --------~~~----------~~~~~~~~~~v~~~Dva~~~~~~l~~-----~~~~~~~~~v~~~~~~~~~s~~e~~~~i  298 (301)
                              +..          ....+.....+++|.++++++.+...     +.....+||+++ +.-.+++|.++.+..
T Consensus       249 dn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~ts-s~~Np~t~~~~~e~~  327 (467)
T KOG1221|consen  249 DNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTS-SNDNPVTWGDFIELA  327 (467)
T ss_pred             ccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecc-cccCcccHHHHHHHH
Confidence                    111          11223334578999999998865521     112355999999 445899999999876


Q ss_pred             hc
Q 022216          299 KQ  300 (301)
Q Consensus       299 ~~  300 (301)
                      .+
T Consensus       328 ~~  329 (467)
T KOG1221|consen  328 LR  329 (467)
T ss_pred             HH
Confidence            54

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.78  E-value=1.6e-18  Score=139.06  Aligned_cols=160  Identities=18%  Similarity=0.235  Sum_probs=126.4

Q ss_pred             CCeEEEEcC-CchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-------CCC
Q 022216           66 QKKIFVAGA-TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-------DSE  137 (301)
Q Consensus        66 ~~~vlVtGa-tG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-------~~d  137 (301)
                      .|+|||||+ .||||.+++++|.++|+.|++..|+.+...++.  ...++..++.|+++ ++++.+..+.       ++|
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~--~~~gl~~~kLDV~~-~~~V~~v~~evr~~~~Gkld   83 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA--IQFGLKPYKLDVSK-PEEVVTVSGEVRANPDGKLD   83 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH--HhhCCeeEEeccCC-hHHHHHHHHHHhhCCCCceE
Confidence            578888875 689999999999999999999999998887765  34679999999999 6666655432       699


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      +++||||....        .+.+..|++|+.|..+++++....   ..+.||+++|...|-            +....+.
T Consensus        84 ~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v------------pfpf~~i  151 (289)
T KOG1209|consen   84 LLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV------------PFPFGSI  151 (289)
T ss_pred             EEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe------------ccchhhh
Confidence            99999996432        234678999999999988887421   236999999987552            2233578


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTG  240 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~  240 (301)
                      |.+||++..++.+       .+|++++.+-+|.+.+...+.
T Consensus       152 YsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~k  192 (289)
T KOG1209|consen  152 YSASKAAIHAYARTLRLELKPFGVRVINAITGGVATDIADK  192 (289)
T ss_pred             hhHHHHHHHHhhhhcEEeeeccccEEEEecccceecccccC
Confidence            8999999987764       479999999999999875444

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.78  E-value=1.7e-19  Score=154.36  Aligned_cols=189  Identities=19%  Similarity=0.244  Sum_probs=130.3

Q ss_pred             cCC--chHHHHHHHHHHHCCCeEEEEEeCCchh----hhccccCCCCeEEEEccCCCChHhHHHH-------h-cCCCCE
Q 022216           73 GAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKA----KTTLSKDNPSLQIVKADVTEGSAKLSEA-------I-GDDSEA  138 (301)
Q Consensus        73 Gat--G~iG~~~~~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~-~~~~d~  138 (301)
                      |++  ++||++++++|+++|++|++.+|+.++.    +++..+.+  ..++.+|++| ++++.+.       + +. +|+
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~--~~~~~~D~~~-~~~v~~~~~~~~~~~~g~-iD~   76 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG--AEVIQCDLSD-EESVEALFDEAVERFGGR-IDI   76 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT--SEEEESCTTS-HHHHHHHHHHHHHHHCSS-ESE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC--CceEeecCcc-hHHHHHHHHHHHhhcCCC-eEE
Confidence            666  9999999999999999999999998874    33332222  4469999999 6555544       5 55 999


Q ss_pred             EEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          139 VVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       139 Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +|||+|....            ++|...+++|+.+...+++++.+.  .-+++|++||......            ...+
T Consensus        77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~------------~~~~  144 (241)
T PF13561_consen   77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRP------------MPGY  144 (241)
T ss_dssp             EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSB------------STTT
T ss_pred             EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhccc------------Cccc
Confidence            9999986543            234567789999999999988432  1268999999863221            1224


Q ss_pred             hHHHHHHHHHHHHHH-------H-cCCcEEEEecCcccCCCCCCc-----eeecccc-ccccCCCCHHHHHHHHHHHhcC
Q 022216          205 GLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEPPTGN-----IIMETED-TLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~-~~i~~~~irpg~v~~~~~~~~-----~~~~~~~-~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ..|..+|.+.+.+.+       . +|||+|.|.||++.++.....     ....... .....+..++|+|++++ +|.+
T Consensus       145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~r~~~~~evA~~v~-fL~s  223 (241)
T PF13561_consen  145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLGRLGTPEEVANAVL-FLAS  223 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTSSHBEHHHHHHHHH-HHHS
T ss_pred             hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhccCCCcCHHHHHHHHH-HHhC
Confidence            578888888876553       4 799999999999998752211     0001111 12223468999999994 5556


Q ss_pred             CCCCCcEE
Q 022216          271 PESSYKVV  278 (301)
Q Consensus       271 ~~~~~~~~  278 (301)
                      +.+.+.+.
T Consensus       224 ~~a~~itG  231 (241)
T PF13561_consen  224 DAASYITG  231 (241)
T ss_dssp             GGGTTGTS
T ss_pred             ccccCccC
Confidence            65444333

...

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.77  E-value=4.8e-17  Score=141.49  Aligned_cols=207  Identities=25%  Similarity=0.280  Sum_probs=156.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      ++||||||||++|++++++|+++|++|+++.|+++......    ..+.+..+|+.+ ...+...+.+ +|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~----~~v~~~~~d~~~-~~~l~~a~~G-~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA----GGVEVVLGDLRD-PKSLVAGAKG-VDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc----CCcEEEEeccCC-HhHHHHHhcc-ccEEEEEeccc
Confidence            57999999999999999999999999999999998877654    789999999999 8999999999 99999988755


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEE
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYT  226 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~  226 (301)
                      . .+. ...........+..+++. .+.++++.+|......              .....|..+|...|+.+...|++++
T Consensus        75 ~-~~~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~--------------~~~~~~~~~~~~~e~~l~~sg~~~t  137 (275)
T COG0702          75 D-GSD-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADA--------------ASPSALARAKAAVEAALRSSGIPYT  137 (275)
T ss_pred             c-ccc-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCC--------------CCccHHHHHHHHHHHHHHhcCCCeE
Confidence            4 222 223333444444444444 3467888888874211              1135678999999999999999999


Q ss_pred             EEecCcccCCCCCCc---------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHH
Q 022216          227 IIRPGGLRNEPPTGN---------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGS  297 (301)
Q Consensus       227 ~irpg~v~~~~~~~~---------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~  297 (301)
                      ++||..++.......         ........ ...++..+|+++++...+..+...+++|.+.++   +..+..|+.+.
T Consensus       138 ~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~a~~~~~~l~~~~~~~~~~~l~g~---~~~~~~~~~~~  213 (275)
T COG0702         138 TLRRAAFYLGAGAAFIEAAEAAGLPVIPRGIG-RLSPIAVDDVAEALAAALDAPATAGRTYELAGP---EALTLAELASG  213 (275)
T ss_pred             EEecCeeeeccchhHHHHHHhhCCceecCCCC-ceeeeEHHHHHHHHHHHhcCCcccCcEEEccCC---ceecHHHHHHH
Confidence            999666655432221         11111111 235789999999999999888778899999995   88999998887


Q ss_pred             hhc
Q 022216          298 IKQ  300 (301)
Q Consensus       298 i~~  300 (301)
                      +.+
T Consensus       214 l~~  216 (275)
T COG0702         214 LDY  216 (275)
T ss_pred             HHH
Confidence            653

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.77  E-value=3.1e-18  Score=150.54  Aligned_cols=209  Identities=16%  Similarity=0.141  Sum_probs=126.9

Q ss_pred             hcccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCC---------chhh--hcc-ccCCC-----CeEEEEccCC
Q 022216           62 VSVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDL---------DKAK--TTL-SKDNP-----SLQIVKADVT  122 (301)
Q Consensus        62 ~~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~---------~~~~--~~~-~~~~~-----~~~~~~~Dl~  122 (301)
                      ..+++|++|||||+  .+||++++++|+++|++|++.++.+         +..+  ... .....     .+..+.+|++
T Consensus         4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~   83 (299)
T PRK06300          4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD   83 (299)
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence            35579999999995  9999999999999999999866431         0000  000 00000     1111223333


Q ss_pred             CCh-----------------HhHH-------HHhcCCCCEEEEccCCCC----------CCCCCCceeeehHHHHHHHHH
Q 022216          123 EGS-----------------AKLS-------EAIGDDSEAVVCATGFQP----------GWDLFAPWKVDNFGTVNLVEA  168 (301)
Q Consensus       123 ~~~-----------------~~~~-------~~~~~~~d~Vi~~Ag~~~----------~~~~~~~~~~N~~g~~~l~~a  168 (301)
                      +.+                 +++.       +.++. +|++|||||...          .++|+..+++|+.|.++++++
T Consensus        84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~-lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a  162 (299)
T PRK06300         84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGH-IDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSH  162 (299)
T ss_pred             CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCC-CcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence            311                 1222       33345 999999998532          135677889999999999999


Q ss_pred             HHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------H-cCCcEEEEecCcccCCCC
Q 022216          169 CRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEPP  238 (301)
Q Consensus       169 ~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~-~~i~~~~irpg~v~~~~~  238 (301)
                      +.+.  ..+++|++||....-   +.+   .+     ...|..+|.+.+.+.+       . +||+++.|.||.+.+++.
T Consensus       163 ~~p~m~~~G~ii~iss~~~~~---~~p---~~-----~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~  231 (299)
T PRK06300        163 FGPIMNPGGSTISLTYLASMR---AVP---GY-----GGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAG  231 (299)
T ss_pred             HHHHhhcCCeEEEEeehhhcC---cCC---Cc-----cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhh
Confidence            8542  226899999875321   111   10     1368888888876542       2 489999999999999864


Q ss_pred             CCceeec------cccccccCCCCHHHHHHHHHHHhcCCC--CCCcEEEeec
Q 022216          239 TGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       239 ~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~  282 (301)
                      .......      ...........++|+|++++.++....  ..++++.+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdG  283 (299)
T PRK06300        232 KAIGFIERMVDYYQDWAPLPEPMEAEQVGAAAAFLVSPLASAITGETLYVDH  283 (299)
T ss_pred             hcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence            3210000      001111235689999999966554321  3455555543

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.76  E-value=5.4e-18  Score=135.40  Aligned_cols=166  Identities=15%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh---cC---CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI---GD---DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~---~~d  137 (301)
                      +.|-+||||||+.|||.+++++|.+.|.+|++.+|+.+.+++.+. ..+.+....+|+.| .++.++..   ..   .++
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~-~~p~~~t~v~Dv~d-~~~~~~lvewLkk~~P~lN   80 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA-ENPEIHTEVCDVAD-RDSRRELVEWLKKEYPNLN   80 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh-cCcchheeeecccc-hhhHHHHHHHHHhhCCchh
Confidence            457899999999999999999999999999999999999988775 55788899999999 54333322   21   499


Q ss_pred             EEEEccCCCCCCC----------CCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          138 AVVCATGFQPGWD----------LFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       138 ~Vi~~Ag~~~~~~----------~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ++|||||+....|          ....+++|+.++.+|..++.    +..-.-||++||...+-...   ..|.|+..|.
T Consensus        81 vliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~---~~PvYcaTKA  157 (245)
T COG3967          81 VLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMA---STPVYCATKA  157 (245)
T ss_pred             eeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCccc---ccccchhhHH
Confidence            9999999865422          23446799999988888773    33446899999986442211   1234444432


Q ss_pred             hhHHHHHHHHHHHHHHHcCCcEEEEecCcccCC
Q 022216          204 FGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNE  236 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~~~~i~~~~irpg~v~~~  236 (301)
                       ..+..++..-|+ ++..+++|.-+-|..|.++
T Consensus       158 -aiHsyt~aLR~Q-lk~t~veVIE~~PP~V~t~  188 (245)
T COG3967         158 -AIHSYTLALREQ-LKDTSVEVIELAPPLVDTT  188 (245)
T ss_pred             -HHHHHHHHHHHH-hhhcceEEEEecCCceecC
Confidence             222333333333 4567899999999999986

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.76  E-value=8.2e-18  Score=143.99  Aligned_cols=179  Identities=16%  Similarity=0.059  Sum_probs=126.1

Q ss_pred             HHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC---CCCEEEEccCCCCCCCCCCceeee
Q 022216           82 IVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCATGFQPGWDLFAPWKVD  158 (301)
Q Consensus        82 ~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---~~d~Vi~~Ag~~~~~~~~~~~~~N  158 (301)
                      ++++|+++|++|++++|+.++..        ...++++|++| .+++.+.++.   ++|+||||||.....+++..+++|
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~--------~~~~~~~Dl~~-~~~v~~~~~~~~~~iD~li~nAG~~~~~~~~~~~~vN   71 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMT--------LDGFIQADLGD-PASIDAAVAALPGRIDALFNIAGVPGTAPVELVARVN   71 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhh--------hhHhhcccCCC-HHHHHHHHHHhcCCCeEEEECCCCCCCCCHHHhhhhc
Confidence            47899999999999999876532        13567899999 7777777653   499999999986666788899999


Q ss_pred             hHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCC---------cc------hhhcchhhHHHHHHHHHHHHH---
Q 022216          159 NFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILN---------PA------YIFLNVFGLTLIAKLQAEQYI---  218 (301)
Q Consensus       159 ~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~---------~~------~~~~~~~~~y~~sK~~~e~~~---  218 (301)
                      +.++..+++++.+.  ..++||++||...|+.....+..         +.      ..+......|+.+|.+.+.+.   
T Consensus        72 ~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~l  151 (241)
T PRK12428         72 FLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALILWTMRQ  151 (241)
T ss_pred             hHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHH
Confidence            99999999998653  23699999999887532110000         00      012334578999999987543   


Q ss_pred             -----HHcCCcEEEEecCcccCCCCCCceee------ccccccccCCCCHHHHHHHHHHHhc
Q 022216          219 -----RKSGINYTIIRPGGLRNEPPTGNIIM------ETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       219 -----~~~~i~~~~irpg~v~~~~~~~~~~~------~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                           ...|++++.|+||.+.|++.......      .........+..++|+|++++.++.
T Consensus       152 a~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~~~~l~s  213 (241)
T PRK12428        152 AQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVDSDAKRMGRPATADEQAAVLVFLCS  213 (241)
T ss_pred             HHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhhhcccccCCCCCHHHHHHHHHHHcC
Confidence                 23589999999999999874331100      0000112235689999999976653

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.75  E-value=3.7e-17  Score=133.15  Aligned_cols=227  Identities=13%  Similarity=0.145  Sum_probs=169.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      +..+|||||+-|.+|..+++.|... |.+-+++..-....+..    ...-.++..|+.| ...+++..-+ ++|-+||.
T Consensus        43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V----~~~GPyIy~DILD-~K~L~eIVVn~RIdWL~Hf  117 (366)
T KOG2774|consen   43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANV----TDVGPYIYLDILD-QKSLEEIVVNKRIDWLVHF  117 (366)
T ss_pred             CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhh----cccCCchhhhhhc-cccHHHhhcccccceeeeH
Confidence            4579999999999999999988876 65444443222222222    2455678899999 7888888765 79999998


Q ss_pred             cCC---CCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH-
Q 022216          143 TGF---QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-  218 (301)
Q Consensus       143 Ag~---~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-  218 (301)
                      .+.   ..+.+.....++|+.|..|+++.+++++. ++...|+++++|...+.-..++.+-+.|...||.||..+|-+- 
T Consensus       118 SALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKVHAEL~GE  196 (366)
T KOG2774|consen  118 SALLSAVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKVHAELLGE  196 (366)
T ss_pred             HHHHHHhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCeeeecCceeechhHHHHHHHHH
Confidence            653   23455667789999999999999999986 7788899999987766555677777888999999999998422 


Q ss_pred             ---HHcCCcEEEEecCcccCC--CCC----------------CceeeccccccccCCCCHHHHHHHHHHHhcCCC--CCC
Q 022216          219 ---RKSGINYTIIRPGGLRNE--PPT----------------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPE--SSY  275 (301)
Q Consensus       219 ---~~~~i~~~~irpg~v~~~--~~~----------------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~  275 (301)
                         .++|+++-.+|...+...  +..                ++....-......+.++.+|+-+++++++..+.  -..
T Consensus       197 y~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~a~~~~lkr  276 (366)
T KOG2774|consen  197 YFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLAADSQSLKR  276 (366)
T ss_pred             HHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHhCCHHHhhh
Confidence               357899888886655543  111                112222233444567899999999999998765  356


Q ss_pred             cEEEeecCCCCCCcCHHHHHHHhhcC
Q 022216          276 KVVEIISRVDAPKRSYEDLFGSIKQR  301 (301)
Q Consensus       276 ~~~~v~~~~~~~~~s~~e~~~~i~~~  301 (301)
                      ++||+..    ..++-+|++..+.++
T Consensus       277 r~ynvt~----~sftpee~~~~~~~~  298 (366)
T KOG2774|consen  277 RTYNVTG----FSFTPEEIADAIRRV  298 (366)
T ss_pred             heeeece----eccCHHHHHHHHHhh
Confidence            7999998    899999999998764

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.75  E-value=1.5e-17  Score=141.64  Aligned_cols=163  Identities=26%  Similarity=0.420  Sum_probs=128.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC-CCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD-NPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +.++|.|||||+..++|..+|++|.+.|++|.+-.-.++..+.+..+. .++...++.|+++ ++++.++.+       +
T Consensus        26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~-~esi~~a~~~V~~~l~~  104 (322)
T KOG1610|consen   26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTK-PESVKEAAQWVKKHLGE  104 (322)
T ss_pred             ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCC-HHHHHHHHHHHHHhccc
Confidence            345789999999999999999999999999999887777767665544 7889999999999 777777653       2


Q ss_pred             -CCCEEEEccCCCC---C------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQP---G------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~---~------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       +.=.||||||+..   +      ++++.++++|+.|+..+.+++    +++. +|||++||++  | ...         
T Consensus       105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~--G-R~~---------  171 (322)
T KOG1610|consen  105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVL--G-RVA---------  171 (322)
T ss_pred             ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEecccc--c-Ccc---------
Confidence             4779999999542   2      345667899999998888887    3443 7999999996  2 211         


Q ss_pred             cchhhHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCC
Q 022216          201 LNVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPT  239 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~  239 (301)
                      ....+.|..||.+.|.+.       +.+|++|.+|.||.+.++...
T Consensus       172 ~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~  217 (322)
T KOG1610|consen  172 LPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN  217 (322)
T ss_pred             CcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC
Confidence            122577889999998654       458999999999988887654

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=1.7e-18  Score=134.49  Aligned_cols=206  Identities=18%  Similarity=0.155  Sum_probs=151.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      .++-+.|||||.+++|++.+++|+++|+.|.+++-..++..+..++.+.++.+..+|+++ ++.+..++..      ++|
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvts-ekdv~aala~ak~kfgrld   85 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTS-EKDVRAALAKAKAKFGRLD   85 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCc-HHHHHHHHHHHHhhcccee
Confidence            467899999999999999999999999999999988888777776678899999999999 6666655532      499


Q ss_pred             EEEEccCCCCC--------------CCCCCceeeehHHHHHHHHHHHH--------c-C-CCEEEEecccccccccCCCC
Q 022216          138 AVVCATGFQPG--------------WDLFAPWKVDNFGTVNLVEACRK--------R-G-VNRFILISSILVNGAAMGQI  193 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------------~~~~~~~~~N~~g~~~l~~a~~~--------~-~-~~~iV~~SS~~~~~~~~~~~  193 (301)
                      +.+||||+...              +++...+++|+.|++|+++....        . | .+-||++.|.+++....++ 
T Consensus        86 ~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~gq-  164 (260)
T KOG1199|consen   86 ALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTGQ-  164 (260)
T ss_pred             eeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCccch-
Confidence            99999997431              46778899999999999887521        1 1 2468888888877554442 


Q ss_pred             CCcchhhcchhhHHHHHHHHHHH-------HHHHcCCcEEEEecCcccCCCCCCcee-----eccccccccCCCCHHHHH
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQ-------YIRKSGINYTIIRPGGLRNEPPTGNII-----METEDTLYEGTISRDQVA  261 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~-------~~~~~~i~~~~irpg~v~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva  261 (301)
                                 ..|..||.+.--       -+..-|||++.|.||.+.+|+......     +....+.+...-++.+-+
T Consensus       165 -----------aaysaskgaivgmtlpiardla~~gir~~tiapglf~tpllsslpekv~~fla~~ipfpsrlg~p~eya  233 (260)
T KOG1199|consen  165 -----------AAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLSSLPEKVKSFLAQLIPFPSRLGHPHEYA  233 (260)
T ss_pred             -----------hhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhhhhhHHHHHHHHHhCCCchhcCChHHHH
Confidence                       445566655421       123468999999999999997654321     111122222345788888


Q ss_pred             HHHHHHhcCCCCCCcEEEeec
Q 022216          262 EVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       262 ~~~~~~l~~~~~~~~~~~v~~  282 (301)
                      ..+-..+++|--.+++..+.+
T Consensus       234 hlvqaiienp~lngevir~dg  254 (260)
T KOG1199|consen  234 HLVQAIIENPYLNGEVIRFDG  254 (260)
T ss_pred             HHHHHHHhCcccCCeEEEecc
Confidence            888777788876777666543

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.74  E-value=1.9e-16  Score=124.49  Aligned_cols=202  Identities=23%  Similarity=0.292  Sum_probs=146.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+|.|.||||.+|+.++++++++|++|+++.|++++....     +++.+++.|+.| .+++.+.+.+ .|+||..-+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-----~~~~i~q~Difd-~~~~a~~l~g-~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-----QGVTILQKDIFD-LTSLASDLAG-HDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-----ccceeecccccC-hhhhHhhhcC-CceEEEeccCC
Confidence            6899999999999999999999999999999999987532     678899999999 8888999999 99999987654


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH--HHHH-HcCC
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE--QYIR-KSGI  223 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e--~~~~-~~~i  223 (301)
                      .....    .-.......+++..+..++.|++.++..+...-..+..  --..+.-|...|...+..+|  +.++ +..+
T Consensus        74 ~~~~~----~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~r--LvD~p~fP~ey~~~A~~~ae~L~~Lr~~~~l  147 (211)
T COG2910          74 ASDND----ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTR--LVDTPDFPAEYKPEALAQAEFLDSLRAEKSL  147 (211)
T ss_pred             CCChh----HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCce--eecCCCCchhHHHHHHHHHHHHHHHhhccCc
Confidence            22111    22345577889999998999999988764321111110  00111122334456666666  3343 4569


Q ss_pred             cEEEEecCcccCCCC-CCceeeccccccc----cCCCCHHHHHHHHHHHhcCCCCCCcEEEee
Q 022216          224 NYTIIRPGGLRNEPP-TGNIIMETEDTLY----EGTISRDQVAEVAVEALLHPESSYKVVEII  281 (301)
Q Consensus       224 ~~~~irpg~v~~~~~-~~~~~~~~~~~~~----~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~  281 (301)
                      +|+.+.|..++-|.. ++.+...++.-..    .++|+.+|-|-+++..++.|....+.|.+.
T Consensus       148 ~WTfvSPaa~f~PGerTg~yrlggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~~h~rqRftv~  210 (211)
T COG2910         148 DWTFVSPAAFFEPGERTGNYRLGGDQLLVNAKGESRISYADYAIAVLDELEKPQHIRQRFTVA  210 (211)
T ss_pred             ceEEeCcHHhcCCccccCceEeccceEEEcCCCceeeeHHHHHHHHHHHHhcccccceeeeec
Confidence            999999999998854 3455554432222    258999999999999999998777777654

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.74  E-value=5.2e-17  Score=131.45  Aligned_cols=156  Identities=21%  Similarity=0.175  Sum_probs=116.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc------cccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT------LSKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++||||+|+||.+++++|+++|+ .|+++.|+.......      ......++.++.+|+++ .+.+.+.+..     
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   79 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVAD-RAALAAALAAIPARL   79 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            5799999999999999999999996 677778875443211      11134567889999998 6666555432     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                       ++|+|||+||....        ++++..+++|+.++.++++++++.+.+++|++||....-..            ..+.
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~------------~~~~  147 (180)
T smart00822       80 GPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGN------------PGQA  147 (180)
T ss_pred             CCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCC------------CCch
Confidence             38999999986431        23456789999999999999988777899999997532111            1245


Q ss_pred             HHHHHHHHHHHHHH---HcCCcEEEEecCcccC
Q 022216          206 LTLIAKLQAEQYIR---KSGINYTIIRPGGLRN  235 (301)
Q Consensus       206 ~y~~sK~~~e~~~~---~~~i~~~~irpg~v~~  235 (301)
                      .|..+|...+.+.+   ..+++++.+.||.+.+
T Consensus       148 ~y~~sk~~~~~~~~~~~~~~~~~~~~~~g~~~~  180 (180)
T smart00822      148 NYAAANAFLDALAAHRRARGLPATSINWGAWAD  180 (180)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCceEEEeeccccC
Confidence            68889998887653   4789999999997653

It uses NADPH to reduce the keto group to a hydroxy group.

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.72  E-value=6.2e-17  Score=139.14  Aligned_cols=190  Identities=19%  Similarity=0.158  Sum_probs=128.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch--hhhccccCC----CCeEEEEccCCCChHhHH-------H
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLSKDN----PSLQIVKADVTEGSAKLS-------E  130 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~--~~~~~~~~~----~~~~~~~~Dl~~~~~~~~-------~  130 (301)
                      +++|++|||||+++||++++++|+++|++|+++.|+...  .+.......    ..+.+..+|+++..+++.       +
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~   82 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE   82 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999988887654  222211122    367788899996233333       3


Q ss_pred             HhcCCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCCCcchhh
Q 022216          131 AIGDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       131 ~~~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      .++. +|++|||||....         ++++.++++|+.|...+.+++...- .++||++||.... .....        
T Consensus        83 ~~g~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~--------  152 (251)
T COG1028          83 EFGR-IDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPG--------  152 (251)
T ss_pred             HcCC-CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCC--------
Confidence            3445 9999999997431         3566788999999999888553221 1299999998643 21110        


Q ss_pred             cchhhHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCCCceeec-------cccccccCCCCHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTGNIIME-------TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~~~~~~~-------~~~~~~~~~v~~~Dva~~~~~  266 (301)
                         +..|..+|.+.+.+.       ..+|++++.|.||.+.+++........       ........+..+.++++.+..
T Consensus       153 ---~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (251)
T COG1028         153 ---QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGRLGTPEEVAAAVAF  229 (251)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcchhhhhhhhhhHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence               467888888886543       246899999999988877644221110       000011134567788888763

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.72  E-value=1.4e-17  Score=134.11  Aligned_cols=140  Identities=18%  Similarity=0.280  Sum_probs=107.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeC--Cchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD--LDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~--~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      |+++||||+++||++++++|+++|. .|+++.|+  .+...++.   .....++.++++|+++ .+++.+.+..      
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSD-PESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTS-HHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            6899999999999999999999965 67777777  33333332   2245889999999999 7666555432      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ++|+||||||....        ++++.++++|+.+...+.+++...+.++||++||....-   +         ......
T Consensus        80 ~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~---~---------~~~~~~  147 (167)
T PF00106_consen   80 PLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVR---G---------SPGMSA  147 (167)
T ss_dssp             SESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTS---S---------STTBHH
T ss_pred             cccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhcc---C---------CCCChh
Confidence            49999999997653        245567899999999999999876668999999986432   1         123577


Q ss_pred             HHHHHHHHHHHHH
Q 022216          207 TLIAKLQAEQYIR  219 (301)
Q Consensus       207 y~~sK~~~e~~~~  219 (301)
                      |..+|.+.+.+.+
T Consensus       148 Y~askaal~~~~~  160 (167)
T PF00106_consen  148 YSASKAALRGLTQ  160 (167)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8899999987765

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.66  E-value=2.1e-15  Score=128.39  Aligned_cols=193  Identities=20%  Similarity=0.241  Sum_probs=137.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      .+|+|||++.+||..++.++..+|++|+++.|+..++.+....     ....+.+..+|+.| -+++...+++      .
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~-Y~~v~~~~~~l~~~~~~  112 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVID-YDSVSKVIEELRDLEGP  112 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEecccccc-HHHHHHHHhhhhhccCC
Confidence            5899999999999999999999999999999999888775543     11236688899988 6777666654      5


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|.+|||||..-.        ++.+..+++|..|+.|+++++.    +.. .++|+.+||..+.-   +         ..
T Consensus       113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~---~---------i~  180 (331)
T KOG1210|consen  113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML---G---------IY  180 (331)
T ss_pred             cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc---C---------cc
Confidence            8999999996432        2345678999999999998873    222 35999999976321   1         12


Q ss_pred             hhhHHHHHHHHHHHH-------HHHcCCcEEEEecCcccCCCCCCceeeccccc----cccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQY-------IRKSGINYTIIRPGGLRNEPPTGNIIMETEDT----LYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~-------~~~~~i~~~~irpg~v~~~~~~~~~~~~~~~~----~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .|+.|..+|.+...+       +..+|+.++..-|+.+.+|+....-...+...    -..+.+..+++|.+++.=+.+.
T Consensus       181 GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~ss~~~~e~~a~~~~~~~~rg  260 (331)
T KOG1210|consen  181 GYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKPEETKIIEGGSSVIKCEEMAKAIVKGMKRG  260 (331)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCchheeeecCCCCCcCHHHHHHHHHhHHhhc
Confidence            244455555554322       23479999999999999996544332222211    1134578899999998777655


Q ss_pred             C
Q 022216          272 E  272 (301)
Q Consensus       272 ~  272 (301)
                      .
T Consensus       261 ~  261 (331)
T KOG1210|consen  261 N  261 (331)
T ss_pred             C
Confidence            3

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.64  E-value=3.6e-15  Score=127.16  Aligned_cols=164  Identities=20%  Similarity=0.199  Sum_probs=124.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCCh---HhHHHHhcC-CCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGS---AKLSEAIGD-DSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~---~~~~~~~~~-~~d  137 (301)
                      ++.+.|||||.+||++.+++|+++|.+|+++.|++++++....+    ....+.++..|.+++.   +.+.+.+.+ ++.
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~Vg  128 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVG  128 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceE
Confidence            58999999999999999999999999999999999998876543    3466889999999832   335555555 577


Q ss_pred             EEEEccCCCCC----------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          138 AVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       138 ~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ++|||+|...+          +.....+.+|+.++..+.+..    .+.+.+-||++||.+.   .         .+...
T Consensus       129 ILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag---~---------~p~p~  196 (312)
T KOG1014|consen  129 ILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAG---L---------IPTPL  196 (312)
T ss_pred             EEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccc---c---------ccChh
Confidence            99999997652          134567899999977777665    4445678999999851   1         12233


Q ss_pred             hhHHHHHHHHHHHH-------HHHcCCcEEEEecCcccCCCCCCc
Q 022216          204 FGLTLIAKLQAEQY-------IRKSGINYTIIRPGGLRNEPPTGN  241 (301)
Q Consensus       204 ~~~y~~sK~~~e~~-------~~~~~i~~~~irpg~v~~~~~~~~  241 (301)
                      ++.|..+|...+.+       .+.+||.+-.+-|..|.+++....
T Consensus       197 ~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~~  241 (312)
T KOG1014|consen  197 LSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKYR  241 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccccccC
Confidence            67788888865532       345799999999999999875443

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.60  E-value=5.9e-15  Score=157.83  Aligned_cols=162  Identities=12%  Similarity=0.040  Sum_probs=120.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCch--------------h--------------------------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDK--------------A--------------------------  103 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~--------------~--------------------------  103 (301)
                      +++++|||||++|||.+++++|+++ |++|++++|+...              +                          
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            4789999999999999999999998 6999999998210              0                          


Q ss_pred             -------hh---ccccCCCCeEEEEccCCCChHhHHHHhcC-----CCCEEEEccCCCCC--------CCCCCceeeehH
Q 022216          104 -------KT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD-----DSEAVVCATGFQPG--------WDLFAPWKVDNF  160 (301)
Q Consensus       104 -------~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~  160 (301)
                             .+   .....+..+.++.+|++| .+++.+++..     ++|.||||||+..+        ++|...+++|+.
T Consensus      2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD-~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAAGASAEYASADVTN-SVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred             cchhHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence                   00   001123568899999999 7666665543     49999999997542        356778999999


Q ss_pred             HHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH----H-cCCcEEEEecCcccC
Q 022216          161 GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----K-SGINYTIIRPGGLRN  235 (301)
Q Consensus       161 g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~-~~i~~~~irpg~v~~  235 (301)
                      |++++++++.....++||++||+..+-..   +         ....|..+|...+.+.+    + .+++++.|.||.+.|
T Consensus      2155 G~~~Ll~al~~~~~~~IV~~SSvag~~G~---~---------gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdt 2222 (2582)
T TIGR02813      2155 GLLSLLAALNAENIKLLALFSSAAGFYGN---T---------GQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDG 2222 (2582)
T ss_pred             HHHHHHHHHHHhCCCeEEEEechhhcCCC---C---------CcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecC
Confidence            99999999987766789999998743211   1         13557778877665442    2 368999999999888


Q ss_pred             CCCC
Q 022216          236 EPPT  239 (301)
Q Consensus       236 ~~~~  239 (301)
                      ++..
T Consensus      2223 gm~~ 2226 (2582)
T TIGR02813      2223 GMVN 2226 (2582)
T ss_pred             Cccc
Confidence            7643

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.59  E-value=2.9e-14  Score=111.40  Aligned_cols=159  Identities=23%  Similarity=0.278  Sum_probs=127.8

Q ss_pred             hhcccCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           61 NVSVKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        61 ~~~~~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      ++.|++|.++|.||||-.|+.+++.+++++  .+|+++.|+....+    +....+.....|... -+.....+.+ +|+
T Consensus        13 Df~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~----at~k~v~q~~vDf~K-l~~~a~~~qg-~dV   86 (238)
T KOG4039|consen   13 DFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDP----ATDKVVAQVEVDFSK-LSQLATNEQG-PDV   86 (238)
T ss_pred             HHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCc----cccceeeeEEechHH-HHHHHhhhcC-Cce
Confidence            377889999999999999999999999998  48999999852211    134677788888887 6778888888 999


Q ss_pred             EEEccCCCCC-CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          139 VVCATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       139 Vi~~Ag~~~~-~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      .|.|-|.... ...+.+++++.+-...+.+++++.|+++|+.+||..+-..              ..-.|...|...|+-
T Consensus        87 ~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~s--------------SrFlY~k~KGEvE~~  152 (238)
T KOG4039|consen   87 LFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPS--------------SRFLYMKMKGEVERD  152 (238)
T ss_pred             EEEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcc--------------cceeeeeccchhhhh
Confidence            9999886553 3467788999999999999999999999999999853211              123577888889887


Q ss_pred             HHHcCC-cEEEEecCcccCCCCC
Q 022216          218 IRKSGI-NYTIIRPGGLRNEPPT  239 (301)
Q Consensus       218 ~~~~~i-~~~~irpg~v~~~~~~  239 (301)
                      +.+.++ +++++|||.+.+....
T Consensus       153 v~eL~F~~~~i~RPG~ll~~R~e  175 (238)
T KOG4039|consen  153 VIELDFKHIIILRPGPLLGERTE  175 (238)
T ss_pred             hhhccccEEEEecCcceeccccc
Confidence            777776 5888999999887543

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=99.53  E-value=4.2e-14  Score=115.03  Aligned_cols=194  Identities=21%  Similarity=0.173  Sum_probs=144.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      ++-.+.++.|++|+.|+++++.....|+.|..+.|+..+  +........+.+.++|... ..-+...+.+ +..++-++
T Consensus        50 ve~e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k--~~l~sw~~~vswh~gnsfs-sn~~k~~l~g-~t~v~e~~  125 (283)
T KOG4288|consen   50 VEVEWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENK--QTLSSWPTYVSWHRGNSFS-SNPNKLKLSG-PTFVYEMM  125 (283)
T ss_pred             hhHHHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCc--chhhCCCcccchhhccccc-cCcchhhhcC-CcccHHHh
Confidence            334578999999999999999999999999999998653  3333356788889999876 4556667777 88888888


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH-HHcC
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-RKSG  222 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-~~~~  222 (301)
                      |-..  ....+.++|-....+-++++.+.|+++|+|+|... ||.          ++.- ...|..+|.++|..+ ..++
T Consensus       126 ggfg--n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~----------~~~i-~rGY~~gKR~AE~Ell~~~~  191 (283)
T KOG4288|consen  126 GGFG--NIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGL----------PPLI-PRGYIEGKREAEAELLKKFR  191 (283)
T ss_pred             cCcc--chHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCC----------CCcc-chhhhccchHHHHHHHHhcC
Confidence            6443  23345578888888999999999999999998853 111          1111 146889999999655 4578


Q ss_pred             CcEEEEecCcccCCCCCCcee-----------------------eccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          223 INYTIIRPGGLRNEPPTGNII-----------------------METEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       223 i~~~~irpg~v~~~~~~~~~~-----------------------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      .+-+++|||++||....+.+.                       ++.......+++.+++||.+++.++.+|...|
T Consensus       192 ~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~f~G  267 (283)
T KOG4288|consen  192 FRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPDFKG  267 (283)
T ss_pred             CCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCCcCc
Confidence            999999999999974333221                       12223344567899999999999999998653

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1.8e-12  Score=106.72  Aligned_cols=223  Identities=17%  Similarity=0.113  Sum_probs=157.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh-----hcccc----CCCCeEEEEccCCCChHhHHHHhcC-C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-----TTLSK----DNPSLQIVKADVTEGSAKLSEAIGD-D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~-----~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~  135 (301)
                      .|+.||||-+|.=|+++++.|+..|++|.++.|+.+...     -+...    .+.......+|++| ...+.+.+.. +
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTD-ss~L~k~I~~ik  106 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTD-SSCLIKLISTIK  106 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccc-hHHHHHHHhccC
Confidence            468999999999999999999999999999999876532     12211    34678889999999 7888888877 7


Q ss_pred             CCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCC---CEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          136 SEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~---~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      ++-|+|.|+...-    +-++.+-+++..|+.+|++|.+.++.   -||--.||.-.||.....|. .+..|.-|.+.|+
T Consensus       107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQ-sE~TPFyPRSPYa  185 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQ-SETTPFYPRSPYA  185 (376)
T ss_pred             chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCc-ccCCCCCCCChhH
Confidence            8999999986542    22344568899999999999988763   26777888888987766553 3345667788999


Q ss_pred             HHHHHHHHHH----HHcCC-cEEEEecCcccCCCCCCce--------------------eeccccccccCCCCHHHHHHH
Q 022216          209 IAKLQAEQYI----RKSGI-NYTIIRPGGLRNEPPTGNI--------------------IMETEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       209 ~sK~~~e~~~----~~~~i-~~~~irpg~v~~~~~~~~~--------------------~~~~~~~~~~~~v~~~Dva~~  263 (301)
                      .+|..+-.+.    +.+++ .++-|- .+-..|.....+                    .++. -....+|-+..|-.++
T Consensus       186 ~aKmy~~WivvNyREAYnmfAcNGIL-FNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGN-L~a~RDWGhA~dYVEA  263 (376)
T KOG1372|consen  186 AAKMYGYWIVVNYREAYNMFACNGIL-FNHESPRRGENFVTRKITRSVAKISLGQQEKIELGN-LSALRDWGHAGDYVEA  263 (376)
T ss_pred             HhhhhheEEEEEhHHhhcceeeccEe-ecCCCCccccchhhHHHHHHHHHhhhcceeeEEecc-hhhhcccchhHHHHHH
Confidence            9998875322    23442 222222 122223222211                    1111 1222468889999999


Q ss_pred             HHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHH
Q 022216          264 AVEALLHPESSYKVVEIISRVDAPKRSYEDLFGS  297 (301)
Q Consensus       264 ~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~  297 (301)
                      +...|+++..  ..|-|..+   +..+++|+++.
T Consensus       264 MW~mLQ~d~P--dDfViATg---e~hsVrEF~~~  292 (376)
T KOG1372|consen  264 MWLMLQQDSP--DDFVIATG---EQHSVREFCNL  292 (376)
T ss_pred             HHHHHhcCCC--CceEEecC---CcccHHHHHHH
Confidence            9888887753  35888885   99999999875

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.49  E-value=1.9e-13  Score=111.70  Aligned_cols=153  Identities=23%  Similarity=0.241  Sum_probs=101.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCc-h--hhh---ccccCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD-K--AKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~-~--~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      ++|||||.|+||..+++.|+++|. +|+++.|+.. .  ..+   ........+.++.+|++| .+++.+++.+      
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~~~~~~~   80 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTD-PEAVAAALAQLRQRFG   80 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTS-HHHHHHHHHTSHTTSS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccC-HHHHHHHHHHHHhccC
Confidence            689999999999999999999985 8999999832 1  111   112246789999999999 8888887754      


Q ss_pred             CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      +++.|||+||...+.        ++...+..-+.|+.+|.++......+.+|.+||++..-   +.+..         ..
T Consensus        81 ~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~---G~~gq---------~~  148 (181)
T PF08659_consen   81 PIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLL---GGPGQ---------SA  148 (181)
T ss_dssp             -EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHT---T-TTB---------HH
T ss_pred             CcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhc---cCcch---------Hh
Confidence            589999999975432        23334566788899999999888888999999987431   22212         34


Q ss_pred             HHHHHHHHHHHH---HHcCCcEEEEecCcc
Q 022216          207 TLIAKLQAEQYI---RKSGINYTIIRPGGL  233 (301)
Q Consensus       207 y~~sK~~~e~~~---~~~~i~~~~irpg~v  233 (301)
                      |.......+.+.   +..|.++..|.-|..
T Consensus       149 YaaAN~~lda~a~~~~~~g~~~~sI~wg~W  178 (181)
T PF08659_consen  149 YAAANAFLDALARQRRSRGLPAVSINWGAW  178 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSEEEEEEE-EB
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcccc
Confidence            455555555443   347888888887643

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.48  E-value=4.3e-14  Score=115.01  Aligned_cols=193  Identities=17%  Similarity=0.136  Sum_probs=127.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEE--EeCCchhhhccccCCCCeEEEEccCCCChHh---HHHHhcC---CCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG--VRDLDKAKTTLSKDNPSLQIVKADVTEGSAK---LSEAIGD---DSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~~---~~d  137 (301)
                      ++.+|+||++.+||..++..+.+.+.+....  .|.....+.+............+|++. ...   +.++...   +.|
T Consensus         6 r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~~~L~v~~gd~~v~~~g~~~e-~~~l~al~e~~r~k~gkr~   84 (253)
T KOG1204|consen    6 RKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEGLKVAYGDDFVHVVGDITE-EQLLGALREAPRKKGGKRD   84 (253)
T ss_pred             ceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccccceEEEecCCcceechHHHH-HHHHHHHHhhhhhcCCcee
Confidence            5789999999999999999999888654443  444333333322223344445566665 322   2222221   589


Q ss_pred             EEEEccCCCCC-----------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhc
Q 022216          138 AVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       138 ~Vi~~Ag~~~~-----------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      +||||||...+           .+|..+|+.|+.+...+.+.+.+    .. .+.+|++||.+.            ..+.
T Consensus        85 iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aa------------v~p~  152 (253)
T KOG1204|consen   85 IIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAA------------VRPF  152 (253)
T ss_pred             EEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhh------------hccc
Confidence            99999997542           24778999999998887776632    22 268999999753            2345


Q ss_pred             chhhHHHHHHHHHHHHHH-----Hc-CCcEEEEecCcccCCCCCCcee---eccc-------cccccCCCCHHHHHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-----KS-GINYTIIRPGGLRNEPPTGNII---METE-------DTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-----~~-~i~~~~irpg~v~~~~~~~~~~---~~~~-------~~~~~~~v~~~Dva~~~~  265 (301)
                      +.|+.|..+|++.+.+++     ++ ++++..++||.+.|++......   +.+.       .......+++.+.|..+.
T Consensus       153 ~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~~~ll~~~~~a~~l~  232 (253)
T KOG1204|consen  153 SSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKESGQLLDPQVTAKVLA  232 (253)
T ss_pred             cHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhcCCcCChhhHHHHHH
Confidence            668999999999998764     43 8999999999999987432211   1110       000123567788888887


Q ss_pred             HHhcCC
Q 022216          266 EALLHP  271 (301)
Q Consensus       266 ~~l~~~  271 (301)
                      .+++..
T Consensus       233 ~L~e~~  238 (253)
T KOG1204|consen  233 KLLEKG  238 (253)
T ss_pred             HHHHhc
Confidence            777654

>PRK06720 hypothetical protein; Provisional

Probab=99.43  E-value=1.4e-12  Score=105.22  Aligned_cols=122  Identities=12%  Similarity=0.035  Sum_probs=84.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHH-------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEA-------  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~-------  131 (301)
                      +.+++|+++||||+++||+++++.|+++|++|++++|+.+..++...   .......++.+|+++ .+++.+.       
T Consensus        12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~v~~~~~~   90 (169)
T PRK06720         12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEK-QGDWQRVISITLNA   90 (169)
T ss_pred             cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999988665433211   123457788999999 6555543       


Q ss_pred             hcCCCCEEEEccCCCCCC------CCCCceeeehHHHHHHHHHH----HHc-------CCCEEEEeccccc
Q 022216          132 IGDDSEAVVCATGFQPGW------DLFAPWKVDNFGTVNLVEAC----RKR-------GVNRFILISSILV  185 (301)
Q Consensus       132 ~~~~~d~Vi~~Ag~~~~~------~~~~~~~~N~~g~~~l~~a~----~~~-------~~~~iV~~SS~~~  185 (301)
                      +++ +|++|||||.....      +....-.+|+.++....+.+    ++.       +.+||-.+||.++
T Consensus        91 ~G~-iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (169)
T PRK06720         91 FSR-IDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ  160 (169)
T ss_pred             cCC-CCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence            345 99999999964321      10011245666655554444    222       3478888988753

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=99.37  E-value=7.1e-12  Score=102.32  Aligned_cols=209  Identities=17%  Similarity=0.199  Sum_probs=128.4

Q ss_pred             cccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCchhhh----ccccCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      .++||++||+|-.  ..|+..|++.|.++|+++......+ ++++    +.+ ......+++||+++ ++++.+.|.+  
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~-~~~s~~v~~cDV~~-d~~i~~~f~~i~   79 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAE-ELGSDLVLPCDVTN-DESIDALFATIK   79 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHh-hccCCeEEecCCCC-HHHHHHHHHHHH
Confidence            4679999999964  6799999999999999999876654 3322    221 22345679999999 7666666543  


Q ss_pred             ----CCCEEEEccCCCCCCCC-CCceeeehH--------HHHHHHHHHHHc-----CCCEEEEecccccccccCCCCCCc
Q 022216          135 ----DSEAVVCATGFQPGWDL-FAPWKVDNF--------GTVNLVEACRKR-----GVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~~~~-~~~~~~N~~--------g~~~l~~a~~~~-----~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                          ++|.|||+.|..+.++. -.++++.-.        +++.++..++..     +.+.+|.++-..   ...      
T Consensus        80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlg---s~r------  150 (259)
T COG0623          80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLG---SER------  150 (259)
T ss_pred             HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecc---cee------
Confidence                59999999997663211 112222222        233344333322     225666654431   111      


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc-----ee-eccccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN-----II-METEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~-----~~-~~~~~~~~~~~v~~~Dva~~  263 (301)
                         ..+.|+..+..|.+.|.-.+       ..|||+|.|.-|.+.|=-..+-     +. ......+....++.+||++.
T Consensus       151 ---~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl~r~vt~eeVG~t  227 (259)
T COG0623         151 ---VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRRNVTIEEVGNT  227 (259)
T ss_pred             ---ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCccCCCCHHHhhhh
Confidence               11235677889999985332       3689999999999887422211     11 11112233456889999999


Q ss_pred             HHHHhcCCCCCCcEEEeecCCCCC
Q 022216          264 AVEALLHPESSYKVVEIISRVDAP  287 (301)
Q Consensus       264 ~~~~l~~~~~~~~~~~v~~~~~~~  287 (301)
                      . .+|.++-+.+.+.++...|.+.
T Consensus       228 A-~fLlSdLssgiTGei~yVD~G~  250 (259)
T COG0623         228 A-AFLLSDLSSGITGEIIYVDSGY  250 (259)
T ss_pred             H-HHHhcchhcccccceEEEcCCc
Confidence            8 5666676666665555544343

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.31  E-value=6.1e-12  Score=103.96  Aligned_cols=170  Identities=18%  Similarity=0.216  Sum_probs=120.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-----eEEEEEeCCchhhhccc-------cCCCCeEEEEccCCCChHhHHHHhc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-----AVKAGVRDLDKAKTTLS-------KDNPSLQIVKADVTEGSAKLSEAIG  133 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-----~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~~~~~~~~  133 (301)
                      .|++||||++++||.+++++|++...     ++.+..|+-++.++...       +....++++..|++| ..++..+.+
T Consensus         3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sN-m~Sv~~A~~   81 (341)
T KOG1478|consen    3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSN-MQSVFRASK   81 (341)
T ss_pred             ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhh-HHHHHHHHH
Confidence            47899999999999999999998753     46667898887765322       234678999999999 766666554


Q ss_pred             C------CCCEEEEccCCCCC-----------------------------------CCCCCceeeehHHHHHHHHHHHHc
Q 022216          134 D------DSEAVVCATGFQPG-----------------------------------WDLFAPWKVDNFGTVNLVEACRKR  172 (301)
Q Consensus       134 ~------~~d~Vi~~Ag~~~~-----------------------------------~~~~~~~~~N~~g~~~l~~a~~~~  172 (301)
                      +      ++|.|+.|||..+-                                   ++....|++|+.|.+.+++-....
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence            3      49999999996431                                   344567899999999998887432


Q ss_pred             ---C-CCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCC
Q 022216          173 ---G-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPT  239 (301)
Q Consensus       173 ---~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~  239 (301)
                         + ..++|++||..+-...   ...++..-.+.-..|..||.+.+-+-       ...|+.-.++.||...+.+..
T Consensus       162 l~~~~~~~lvwtSS~~a~kk~---lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~~~~  236 (341)
T KOG1478|consen  162 LCHSDNPQLVWTSSRMARKKN---LSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTNSFS  236 (341)
T ss_pred             hhcCCCCeEEEEeeccccccc---CCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecchhh
Confidence               2 2489999998643222   11233333444456778888876321       135788889999987776533

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.28  E-value=1.1e-10  Score=94.60  Aligned_cols=156  Identities=17%  Similarity=0.210  Sum_probs=109.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC------CCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------DSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~  138 (301)
                      |+++||||+|++|. +++.|+++|++|+++.|+++..+.+...  ....+.++.+|++| .+++.+.+.+      ++|+
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d-~~sv~~~i~~~l~~~g~id~   78 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHD-DDALKLAIKSTIEKNGPFDL   78 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCCeE
Confidence            57999999976665 9999999999999999987665543321  23468889999999 7777766643      4777


Q ss_pred             EEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCC----EEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHH
Q 022216          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN----RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       139 Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~----~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      +|+.+              ++.++.++.++|++.+++    ++|++=...+     .+                 .+...
T Consensus        79 lv~~v--------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~-----~~-----------------~~~~~  122 (177)
T PRK08309         79 AVAWI--------------HSSAKDALSVVCRELDGSSETYRLFHVLGSAA-----SD-----------------PRIPS  122 (177)
T ss_pred             EEEec--------------cccchhhHHHHHHHHccCCCCceEEEEeCCcC-----Cc-----------------hhhhh
Confidence            77654              455689999999999988    8887643221     00                 02223


Q ss_pred             HHHHHHcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          215 EQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       215 e~~~~~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      +... .....+.=|..|++....             ...|++-+++++.++.+++++...
T Consensus       123 ~~~~-~~~~~~~~i~lgf~~~~~-------------~~rwlt~~ei~~gv~~~~~~~~~~  168 (177)
T PRK08309        123 EKIG-PARCSYRRVILGFVLEDT-------------YSRWLTHEEISDGVIKAIESDADE  168 (177)
T ss_pred             hhhh-hcCCceEEEEEeEEEeCC-------------ccccCchHHHHHHHHHHHhcCCCe
Confidence            3323 245567777777765431             125899999999999999877643

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.19  E-value=1e-09  Score=98.06  Aligned_cols=160  Identities=16%  Similarity=0.093  Sum_probs=97.7

Q ss_pred             cCCeEEEEcCCchHHHH--HHHHHHHCCCeEEEEEeCCch---------------hhhccccCCCCeEEEEccCCCChHh
Q 022216           65 KQKKIFVAGATGSSGKR--IVEQLLAKGFAVKAGVRDLDK---------------AKTTLSKDNPSLQIVKADVTEGSAK  127 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~--~~~~l~~~G~~V~~~~r~~~~---------------~~~~~~~~~~~~~~~~~Dl~~~~~~  127 (301)
                      .+|++||||+++++|.+  ++++| +.|++|+++.+..+.               ..+.....+..+..+.+|+++ ++.
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss-~E~  117 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFS-DEI  117 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCC-HHH
Confidence            47999999999999999  89999 999999888753321               111222223456788999999 655


Q ss_pred             HHHHhcC------CCCEEEEccCCCCCCCCC------------------Ccee----------------------eehHH
Q 022216          128 LSEAIGD------DSEAVVCATGFQPGWDLF------------------APWK----------------------VDNFG  161 (301)
Q Consensus       128 ~~~~~~~------~~d~Vi~~Ag~~~~~~~~------------------~~~~----------------------~N~~g  161 (301)
                      +.+.+..      ++|+||||+|.....++.                  .+++                      +++.|
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMg  197 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMG  197 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhc
Confidence            5444322      499999999865332210                  0000                      11122


Q ss_pred             H---HHHHHHHHHcC----CCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEE
Q 022216          162 T---VNLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTI  227 (301)
Q Consensus       162 ~---~~l~~a~~~~~----~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~  227 (301)
                      .   ..-+++....+    ..++|-.|...   ....   .+.|.    -+.-+..|...|...+       ..|+++++
T Consensus       198 gedw~~Wi~al~~a~lla~g~~~va~TY~G---~~~t---~p~Y~----~g~mG~AKa~LE~~~r~La~~L~~~giran~  267 (398)
T PRK13656        198 GEDWELWIDALDEAGVLAEGAKTVAYSYIG---PELT---HPIYW----DGTIGKAKKDLDRTALALNEKLAAKGGDAYV  267 (398)
T ss_pred             cchHHHHHHHHHhcccccCCcEEEEEecCC---ccee---ecccC----CchHHHHHHHHHHHHHHHHHHhhhcCCEEEE
Confidence            1   12233433333    24677776653   1111   11110    1355788888886443       35899999


Q ss_pred             EecCcccCC
Q 022216          228 IRPGGLRNE  236 (301)
Q Consensus       228 irpg~v~~~  236 (301)
                      +..|.+.|.
T Consensus       268 i~~g~~~T~  276 (398)
T PRK13656        268 SVLKAVVTQ  276 (398)
T ss_pred             EecCcccch
Confidence            999999886

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.99  E-value=2.1e-09  Score=94.99  Aligned_cols=168  Identities=14%  Similarity=0.055  Sum_probs=108.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      ++++|+|+|++|.||+.++..|+..+  .+++++++.....+. ..-.+........+.+| ...+.+.+++ .|+||++
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a-~Dl~~~~~~~~v~~~td-~~~~~~~l~g-aDvVVit   83 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVA-ADLSHIDTPAKVTGYAD-GELWEKALRG-ADLVLIC   83 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccc-cchhhcCcCceEEEecC-CCchHHHhCC-CCEEEEC
Confidence            57899999999999999999998665  588888883211111 00011111234456666 4556788999 9999999


Q ss_pred             cCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCC----CCCcchhhcchhhHHHHHHHH---
Q 022216          143 TGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ----ILNPAYIFLNVFGLTLIAKLQ---  213 (301)
Q Consensus       143 Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~----~~~~~~~~~~~~~~y~~sK~~---  213 (301)
                      ||....  .++...+..|+..+.++++++++++++++|+++|.-+..-..-.    .....+   ++-..||.+-+.   
T Consensus        84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~---p~~~viG~g~LDs~R  160 (321)
T PTZ00325         84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVY---DPRKLFGVTTLDVVR  160 (321)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCC---ChhheeechhHHHHH
Confidence            997543  45667789999999999999999999999999996542110000    001111   122233333111   


Q ss_pred             HHHHH-HHcCCcEEEEecCcccCCCCC
Q 022216          214 AEQYI-RKSGINYTIIRPGGLRNEPPT  239 (301)
Q Consensus       214 ~e~~~-~~~~i~~~~irpg~v~~~~~~  239 (301)
                      ...++ +..+++...|+ +++.|+...
T Consensus       161 ~r~~la~~l~v~~~~V~-~~VlGeHGd  186 (321)
T PTZ00325        161 ARKFVAEALGMNPYDVN-VPVVGGHSG  186 (321)
T ss_pred             HHHHHHHHhCcChhheE-EEEEeecCC
Confidence            11222 34678877787 888887655

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.97  E-value=3.6e-09  Score=94.86  Aligned_cols=97  Identities=24%  Similarity=0.324  Sum_probs=80.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +|+|||.|+ |+||+.++..|+++| .+|++.+|+.++..+.......+++.++.|+.| .+++.+++++ .|+|||++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d-~~al~~li~~-~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD-VDALVALIKD-FDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC-hHHHHHHHhc-CCEEEEeCC
Confidence            478999999 999999999999999 899999999999888765455689999999999 8999999999 899999996


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                      ...              ...++++|.+.|+ .+|-+
T Consensus        78 ~~~--------------~~~i~ka~i~~gv-~yvDt   98 (389)
T COG1748          78 PFV--------------DLTILKACIKTGV-DYVDT   98 (389)
T ss_pred             chh--------------hHHHHHHHHHhCC-CEEEc
Confidence            432              2456777776664 34443

>PLN00106 malate dehydrogenase

Probab=98.89  E-value=8.1e-09  Score=91.38  Aligned_cols=115  Identities=15%  Similarity=0.090  Sum_probs=85.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .++|+|||++|.||..++..|+..+.  +++++++++...+ ...-.+........++++ .+++.+.+++ .|+|||+|
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~-a~Dl~~~~~~~~i~~~~~-~~d~~~~l~~-aDiVVitA   94 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV-AADVSHINTPAQVRGFLG-DDQLGDALKG-ADLVIIPA   94 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCee-EchhhhCCcCceEEEEeC-CCCHHHHcCC-CCEEEEeC
Confidence            47999999999999999999997764  7888888762111 110011111223345544 4568889999 99999999


Q ss_pred             CCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          144 GFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       144 g~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |....  .++...+..|...+.++.+.+++++...+|+++|-
T Consensus        95 G~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSN  136 (323)
T PLN00106         95 GVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISN  136 (323)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            97543  46677789999999999999999998888888885

>PRK09620 hypothetical protein; Provisional

Probab=98.83  E-value=1.4e-08  Score=85.73  Aligned_cols=185  Identities=15%  Similarity=0.149  Sum_probs=101.4

Q ss_pred             ccCCeEEEEcCC----------------chHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHh
Q 022216           64 VKQKKIFVAGAT----------------GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK  127 (301)
Q Consensus        64 ~~~~~vlVtGat----------------G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~  127 (301)
                      ++||+||||+|.                |++|++++++|+++|++|+++++.......... .......+..|... .+.
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~-~~~~~~~V~s~~d~-~~~   78 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDIN-NQLELHPFEGIIDL-QDK   78 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccC-CceeEEEEecHHHH-HHH
Confidence            368999999886                999999999999999999988764321111110 12234455654433 356


Q ss_pred             HHHHhcC-CCCEEEEccCCCCC---C-------------CCC--CceeeehHHHHHHHHHHHHcCCCEEEEecccccccc
Q 022216          128 LSEAIGD-DSEAVVCATGFQPG---W-------------DLF--APWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (301)
Q Consensus       128 ~~~~~~~-~~d~Vi~~Ag~~~~---~-------------~~~--~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~  188 (301)
                      +.+.+.. ++|+|||+|++...   .             ...  ..+...+.-+-.++..+++...+ -+.++-....+ 
T Consensus        79 l~~~~~~~~~D~VIH~AAvsD~~~~~~~~~~~~~~~~~~Ki~~~~~~~l~L~~~pdIl~~l~~~~~~-~~~vGFkaEt~-  156 (229)
T PRK09620         79 MKSIITHEKVDAVIMAAAGSDWVVDKICDQEGNVLDMNGKISSDIAPIIHFQKAPKVLKQIKQWDPE-TVLVGFKLESD-  156 (229)
T ss_pred             HHHHhcccCCCEEEECccccceecccccccccccccccCCCcCCCCCeEEEEECcHHHHHHHhhCCC-CEEEEEEeccC-
Confidence            7777753 49999999997431   0             001  11223444455666666554322 23333322100 


Q ss_pred             cCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEEEEecC-cccCCCCCCceeeccccccccCCCCHHHHHHHHHHH
Q 022216          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG-GLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~~irpg-~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                         .  .++       .   .-+ .+.+-+.+++.++++...- ..+|... ..+.+....... ...+=.++|..++..
T Consensus       157 ---~--~~~-------~---l~~-~A~~kl~~k~~D~ivaN~~~~~~g~~~-~~~ii~~~~~~~-~~~~K~~iA~~i~~~  218 (229)
T PRK09620        157 ---V--NEE-------E---LFE-RAKNRMEEAKASVMIANSPHSLYSRGA-MHYVIGQDGKGQ-LCNGKDETAKEIVKR  218 (229)
T ss_pred             ---C--CHH-------H---HHH-HHHHHHHHcCCCEEEECCcccccCCCc-EEEEEeCCCccc-cCCCHHHHHHHHHHH
Confidence               0  000       0   111 2333355688888876542 2344333 233333332222 345678899888877


Q ss_pred             hcC
Q 022216          268 LLH  270 (301)
Q Consensus       268 l~~  270 (301)
                      +.+
T Consensus       219 i~~  221 (229)
T PRK09620        219 LEV  221 (229)
T ss_pred             HHH
Confidence            643

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.83  E-value=2.8e-07  Score=78.03  Aligned_cols=75  Identities=20%  Similarity=0.285  Sum_probs=52.2

Q ss_pred             eEEEE-cCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcCCCCEEEEccCC
Q 022216           68 KIFVA-GATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        68 ~vlVt-GatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +=.|| .+||++|++++++|+++|++|+++.|+..... .   ...++.++.++-.+. .+.+.+.+++ +|+||||||+
T Consensus        17 VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~-~---~~~~v~~i~v~s~~~m~~~l~~~~~~-~DivIh~AAv   91 (229)
T PRK06732         17 VRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKP-E---PHPNLSIIEIENVDDLLETLEPLVKD-HDVLIHSMAV   91 (229)
T ss_pred             ceeecCccchHHHHHHHHHHHhCCCEEEEEECcccccC-C---CCCCeEEEEEecHHHHHHHHHHHhcC-CCEEEeCCcc
Confidence            44455 56788999999999999999999987643211 0   124566666544331 1456667777 9999999997


Q ss_pred             CC
Q 022216          146 QP  147 (301)
Q Consensus       146 ~~  147 (301)
                      ..
T Consensus        92 sd   93 (229)
T PRK06732         92 SD   93 (229)
T ss_pred             CC
Confidence            54

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.79  E-value=2.8e-08  Score=88.46  Aligned_cols=115  Identities=10%  Similarity=0.037  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-------CeEEEEEeCCch--hhhccccCCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-------FAVKAGVRDLDK--AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-------~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      ..+|+||||+|+||++++..|+..+       .+|+++++++..  ++....+...-......|+.. ...+.+.+++ +
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~-~~~~~~~l~~-a   79 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA-TTDPEEAFKD-V   79 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee-cCCHHHHhCC-C
Confidence            3579999999999999999999854       589999986532  221111011111122335544 3567788899 9


Q ss_pred             CEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecc
Q 022216          137 EAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS  182 (301)
                      |+|||+||....  .+....++.|+.-...+.+.++++.  -..+|.+|.
T Consensus        80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            999999997543  3446678899998899988888873  245666665

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]

Probab=98.79  E-value=3.4e-08  Score=80.79  Aligned_cols=214  Identities=14%  Similarity=0.098  Sum_probs=127.8

Q ss_pred             CCeEEEEcCCchHHHHHHH-----HHHHCC----CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           66 QKKIFVAGATGSSGKRIVE-----QLLAKG----FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~-----~l~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      ++..++-+++|+|+..+..     ++-..+    |.|+++.|.+.+...         ++-+.|..--+-++   ... +
T Consensus        12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ri---------tw~el~~~Gip~sc---~a~-v   78 (315)
T KOG3019|consen   12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARI---------TWPELDFPGIPISC---VAG-V   78 (315)
T ss_pred             cccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCccc---------ccchhcCCCCceeh---HHH-H
Confidence            4567788889999977765     333334    889999999876433         33233322100011   111 3


Q ss_pred             CEEEEccCCCCCCCCCCceeeehH-----HHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          137 EAVVCATGFQPGWDLFAPWKVDNF-----GTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       137 d~Vi~~Ag~~~~~~~~~~~~~N~~-----g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      +.+.+|+.-.- .-|...|+-|+.     .+..+.++..++.  .+.+|.+|..++|-........++....   +.-..
T Consensus        79 na~g~n~l~P~-rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~q---gfd~~  154 (315)
T KOG3019|consen   79 NAVGNNALLPI-RRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVHQ---GFDIL  154 (315)
T ss_pred             hhhhhhccCch-hhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccccccC---ChHHH
Confidence            34444444211 133334444444     3778889887764  3579999999998765544333332211   11123


Q ss_pred             HHHHH----HHHHHHcCCcEEEEecCcccCCCCCCc------eee-----ccccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          210 AKLQA----EQYIRKSGINYTIIRPGGLRNEPPTGN------IIM-----ETEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       210 sK~~~----e~~~~~~~i~~~~irpg~v~~~~~~~~------~~~-----~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      +.+..    ..+......++++||-|.+.|......      +.+     -+..+.+.+|||++|++..+..+|+.+...
T Consensus       155 srL~l~WE~aA~~~~~~~r~~~iR~GvVlG~gGGa~~~M~lpF~~g~GGPlGsG~Q~fpWIHv~DL~~li~~ale~~~v~  234 (315)
T KOG3019|consen  155 SRLCLEWEGAALKANKDVRVALIRIGVVLGKGGGALAMMILPFQMGAGGPLGSGQQWFPWIHVDDLVNLIYEALENPSVK  234 (315)
T ss_pred             HHHHHHHHHHhhccCcceeEEEEEEeEEEecCCcchhhhhhhhhhccCCcCCCCCeeeeeeehHHHHHHHHHHHhcCCCC
Confidence            33322    222334568999999999988643221      111     123455668999999999999999998755


Q ss_pred             CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          275 YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       275 ~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      + +.   ++..+++.+-.|+.+.++.
T Consensus       235 G-Vi---NgvAP~~~~n~Ef~q~lg~  256 (315)
T KOG3019|consen  235 G-VI---NGVAPNPVRNGEFCQQLGS  256 (315)
T ss_pred             c-ee---cccCCCccchHHHHHHHHH
Confidence            5 44   4444699999999988753

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.75  E-value=6.3e-07  Score=81.72  Aligned_cols=176  Identities=9%  Similarity=0.159  Sum_probs=101.8

Q ss_pred             cccCCeEEEEcC----------------CchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChH
Q 022216           63 SVKQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        63 ~~~~~~vlVtGa----------------tG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~  126 (301)
                      .+++|+||||||                +|.+|.+++++|+++|++|+++.++.+ ..     ...+  +...|+++ .+
T Consensus       185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-----~~~~--~~~~dv~~-~~  255 (399)
T PRK05579        185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-----TPAG--VKRIDVES-AQ  255 (399)
T ss_pred             ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-----CCCC--cEEEccCC-HH
Confidence            468999999999                888999999999999999999887652 11     1122  34578888 55


Q ss_pred             hHHHHh----cCCCCEEEEccCCCCCC-------CC---CCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCC
Q 022216          127 KLSEAI----GDDSEAVVCATGFQPGW-------DL---FAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       127 ~~~~~~----~~~~d~Vi~~Ag~~~~~-------~~---~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~  192 (301)
                      ++.+++    +. +|++|||||+....       ..   ...+...+.-+-.+++.+++...++-+.++-...       
T Consensus       256 ~~~~~v~~~~~~-~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~pdIl~~l~~~~~~~~~~VGFaaE-------  327 (399)
T PRK05579        256 EMLDAVLAALPQ-ADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNPDILAEVAALKDKRPFVVGFAAE-------  327 (399)
T ss_pred             HHHHHHHHhcCC-CCEEEEcccccccccccccccCccCCCCCceEEEEeCcHHHHHHHhccCCCCEEEEEccC-------
Confidence            555444    45 99999999974311       00   0112334444556777766543222133333220       


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEEEEecC---cccCCCCCCceeeccccc-cccCCCCHHHHHHHHHHHh
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG---GLRNEPPTGNIIMETEDT-LYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~~irpg---~v~~~~~~~~~~~~~~~~-~~~~~v~~~Dva~~~~~~l  268 (301)
                         .+       .   .-+. +.+-+.+++.++++...=   .-+|......+.+..... ...+..+=.++|+.++..+
T Consensus       328 ---t~-------~---~~~~-A~~kl~~k~~D~ivaN~i~~~~~fg~~~n~~~ii~~~~~~~~~~~~~K~~iA~~i~~~i  393 (399)
T PRK05579        328 ---TG-------D---VLEY-ARAKLKRKGLDLIVANDVSAGGGFGSDDNEVTLIWSDGGEVKLPLMSKLELARRLLDEI  393 (399)
T ss_pred             ---Cc-------h---HHHH-HHHHHHHcCCeEEEEecCCcCCCcCCCceEEEEEECCCcEEEcCCCCHHHHHHHHHHHH
Confidence               11       0   0122 222345688888876542   223333333333332222 2234557788999988766


Q ss_pred             c
Q 022216          269 L  269 (301)
Q Consensus       269 ~  269 (301)
                      .
T Consensus       394 ~  394 (399)
T PRK05579        394 A  394 (399)
T ss_pred             H
Confidence            4

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.68  E-value=1.3e-07  Score=86.56  Aligned_cols=93  Identities=28%  Similarity=0.434  Sum_probs=70.8

Q ss_pred             EEEEcCCchHHHHHHHHHHHCC-C-eEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKG-F-AVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G-~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      |+|.|+ |++|+.+++.|++.+ . +|++.+|+.++++++... ...++..++.|+.| .+++.+.+++ .|+||||+|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~l~~~~~~-~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND-PESLAELLRG-CDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT-HHHHHHHHTT-SSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC-HHHHHHHHhc-CCEEEECCcc
Confidence            789999 999999999999997 4 899999999988877654 56799999999999 8889999999 9999999985


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEE
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~  179 (301)
                      ..              ...++++|.+.|+ ++|-
T Consensus        78 ~~--------------~~~v~~~~i~~g~-~yvD   96 (386)
T PF03435_consen   78 FF--------------GEPVARACIEAGV-HYVD   96 (386)
T ss_dssp             GG--------------HHHHHHHHHHHT--EEEE
T ss_pred             ch--------------hHHHHHHHHHhCC-Ceec
Confidence            41              3456666666654 4555

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.62  E-value=1.2e-07  Score=78.39  Aligned_cols=80  Identities=25%  Similarity=0.290  Sum_probs=64.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC--CCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ++++++++|+||+|++|+.+++.|++.|++|+++.|+.++.+++....  ..+......|..+ .+.+.+.+.+ .|+||
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-~diVi  102 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSD-DAARAAAIKG-ADVVF  102 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC-HHHHHHHHhc-CCEEE
Confidence            567899999999999999999999999999999999987665543211  1244566678888 7888889999 99999


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      ++..
T Consensus       103 ~at~  106 (194)
T cd01078         103 AAGA  106 (194)
T ss_pred             ECCC
Confidence            9764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.62  E-value=2.4e-06  Score=77.71  Aligned_cols=175  Identities=12%  Similarity=0.150  Sum_probs=105.6

Q ss_pred             cccCCeEEEEcC---------------C-chHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChH
Q 022216           63 SVKQKKIFVAGA---------------T-GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        63 ~~~~~~vlVtGa---------------t-G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~  126 (301)
                      .+++|+||||||               + |.+|.+++++|.++|++|+++.++....      ....+  ...|+++ .+
T Consensus       182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~------~~~~~--~~~~v~~-~~  252 (390)
T TIGR00521       182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL------TPPGV--KSIKVST-AE  252 (390)
T ss_pred             ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC------CCCCc--EEEEecc-HH
Confidence            478999999999               3 4599999999999999999987665321      11222  4578887 54


Q ss_pred             hH-HHHh----cCCCCEEEEccCCCCCC----------CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCC
Q 022216          127 KL-SEAI----GDDSEAVVCATGFQPGW----------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG  191 (301)
Q Consensus       127 ~~-~~~~----~~~~d~Vi~~Ag~~~~~----------~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~  191 (301)
                      ++ ...+    +. +|++|+|||+....          .....+..|+.-+-.+++..++...+ .+.++-...      
T Consensus       253 ~~~~~~~~~~~~~-~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~~~-~~lvgF~aE------  324 (390)
T TIGR00521       253 EMLEAALNELAKD-FDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIKKH-QVIVGFKAE------  324 (390)
T ss_pred             HHHHHHHHhhccc-CCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhCCC-cEEEEEEcC------
Confidence            44 3333    34 99999999975321          11234567888888888888765433 333433321      


Q ss_pred             CCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEEEEecCc--ccCCCCCCceeeccccccccCCCCHHHHHHHHHHHh
Q 022216          192 QILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG--LRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~~irpg~--v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                          .+.      +   .-+ .+.+-+++++.++++...-.  -+|......+.+........+..+=+++|+.++..+
T Consensus       325 ----t~~------~---l~~-~A~~kl~~k~~D~ivaN~i~~~~fg~~~n~~~li~~~~~~~~~~~~K~~iA~~i~~~~  389 (390)
T TIGR00521       325 ----TND------D---LIK-YAKEKLKKKNLDMIVANDVSQRGFGSDENEVYIFSKHGHKELPLMSKLEVAERILDEI  389 (390)
T ss_pred             ----CCc------H---HHH-HHHHHHHHcCCCEEEEccCCccccCCCCcEEEEEECCCeEEeCCCCHHHHHHHHHHHh
Confidence                100      0   112 23333557889988766432  133333333333333222334556788999887665

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK05086 malate dehydrogenase; Provisional

Probab=98.56  E-value=3.9e-07  Score=80.75  Aligned_cols=113  Identities=19%  Similarity=0.156  Sum_probs=77.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHH-C--CCeEEEEEeCCchhhhccccCC-CCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLA-K--GFAVKAGVRDLDKAKTTLSKDN-PSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~-~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      |+|+|+||+|++|++++..|.. .  ++++++++|++........-.+ .....+.+  .+ .+.+.+.+++ +|+||.+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~--~~-~~d~~~~l~~-~DiVIit   76 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG--FS-GEDPTPALEG-ADVVLIS   76 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE--eC-CCCHHHHcCC-CCEEEEc
Confidence            6899999999999999988855 2  4577877776432110010011 11122333  22 2345677888 9999999


Q ss_pred             cCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          143 TGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       143 Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +|....  .+....+..|.....++++++++.+.+++|.+.|-
T Consensus        77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN  119 (312)
T PRK05086         77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN  119 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            997543  33456678899999999999999988888887774

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=98.49  E-value=3.7e-06  Score=71.10  Aligned_cols=68  Identities=18%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             eEEEEc-CCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHH-------HhcCCCCEE
Q 022216           68 KIFVAG-ATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE-------AIGDDSEAV  139 (301)
Q Consensus        68 ~vlVtG-atG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-------~~~~~~d~V  139 (301)
                      +=.||. ++|+||+++|++|+++|++|+++.+.. ...   . . .   ...+|+.+ .+++.+       .++. +|++
T Consensus        16 VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~-~l~---~-~-~---~~~~Dv~d-~~s~~~l~~~v~~~~g~-iDiL   84 (227)
T TIGR02114        16 VRSITNHSTGHLGKIITETFLSAGHEVTLVTTKR-ALK---P-E-P---HPNLSIRE-IETTKDLLITLKELVQE-HDIL   84 (227)
T ss_pred             ceeecCCcccHHHHHHHHHHHHCCCEEEEEcChh-hcc---c-c-c---CCcceeec-HHHHHHHHHHHHHHcCC-CCEE
Confidence            344554 489999999999999999999887531 111   0 0 1   13478877 444443       3445 9999


Q ss_pred             EEccCCC
Q 022216          140 VCATGFQ  146 (301)
Q Consensus       140 i~~Ag~~  146 (301)
                      |||||+.
T Consensus        85 VnnAgv~   91 (227)
T TIGR02114        85 IHSMAVS   91 (227)
T ss_pred             EECCEec
Confidence            9999964

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=98.41  E-value=2.1e-06  Score=73.57  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=57.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+|||+||||. |+.+++.|.++|++|++..++....+.+..   .+...+..+..| .+++.+.+.+ ++|+||+++..
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~---~g~~~v~~g~l~-~~~l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI---HQALTVHTGALD-PQELREFLKRHSIDILVDATHP   75 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc---cCCceEEECCCC-HHHHHHHHHhcCCCEEEEcCCH
Confidence            58999999999 999999999999999999998875544331   223345566677 6778888866 69999998753

This enzyme was found to be a monomer by gel filtration.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.40  E-value=9e-07  Score=77.68  Aligned_cols=79  Identities=29%  Similarity=0.309  Sum_probs=61.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCC---chhhhcccc---CCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDL---DKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~---~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      .+++|+++|+|| ||+|++++..|++.|++ |+++.|+.   ++.+++...   ....+.+...|+.+ .+.+.+.+.. 
T Consensus       123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~-~~~~~~~~~~-  199 (289)
T PRK12548        123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLND-TEKLKAEIAS-  199 (289)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhh-hhHHHhhhcc-
Confidence            356889999999 89999999999999986 99999986   444443221   22345566788887 6778888888 


Q ss_pred             CCEEEEccC
Q 022216          136 SEAVVCATG  144 (301)
Q Consensus       136 ~d~Vi~~Ag  144 (301)
                      .|+||||..
T Consensus       200 ~DilINaTp  208 (289)
T PRK12548        200 SDILVNATL  208 (289)
T ss_pred             CCEEEEeCC
Confidence            999999864

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.33  E-value=1.4e-06  Score=75.97  Aligned_cols=77  Identities=30%  Similarity=0.420  Sum_probs=65.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHH----CCCeEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLA----KGFAVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~----~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      -++|.||+||-|..++++++.    .|...-+..|+++++++.+..       ......++.+|..| ++++.+..++ .
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n-~~Sl~emak~-~   84 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSAN-EASLDEMAKQ-A   84 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCC-HHHHHHHHhh-h
Confidence            588999999999999999999    788999999999998875532       11234488999999 8999999999 9


Q ss_pred             CEEEEccCCC
Q 022216          137 EAVVCATGFQ  146 (301)
Q Consensus       137 d~Vi~~Ag~~  146 (301)
                      .+|+||+|+-
T Consensus        85 ~vivN~vGPy   94 (423)
T KOG2733|consen   85 RVIVNCVGPY   94 (423)
T ss_pred             EEEEeccccc
Confidence            9999999963

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.29  E-value=1.9e-06  Score=76.60  Aligned_cols=73  Identities=22%  Similarity=0.333  Sum_probs=55.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHC-C-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAK-G-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .+++++|+||||+|+||+.++++|+++ | .+++++.|+..++.++..+      +..+|+.    .+.+.+.+ +|+||
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~e------l~~~~i~----~l~~~l~~-aDiVv  220 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAE------LGGGKIL----SLEEALPE-ADIVV  220 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHH------hccccHH----hHHHHHcc-CCEEE
Confidence            468899999999999999999999865 5 5899889987766654321      1123443    36678888 99999


Q ss_pred             EccCCC
Q 022216          141 CATGFQ  146 (301)
Q Consensus       141 ~~Ag~~  146 (301)
                      |+++..
T Consensus       221 ~~ts~~  226 (340)
T PRK14982        221 WVASMP  226 (340)
T ss_pred             ECCcCC
Confidence            999864

>cd00704 MDH Malate dehydrogenase

Probab=98.26  E-value=5.6e-06  Score=73.64  Aligned_cols=103  Identities=13%  Similarity=0.149  Sum_probs=73.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCC--chhhhccccCCCCeEEEEccCCCC----------hHhH
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDL--DKAKTTLSKDNPSLQIVKADVTEG----------SAKL  128 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~----------~~~~  128 (301)
                      +|.||||+|.+|+.++..|+..|.       ++++++++.  +.+           +....|+.|.          ....
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~-----------~g~~~Dl~d~~~~~~~~~~i~~~~   70 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKAL-----------EGVVMELQDCAFPLLKGVVITTDP   70 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCcc-----------ceeeeehhhhcccccCCcEEecCh
Confidence            789999999999999999998662       488888875  322           2223344331          0345


Q ss_pred             HHHhcCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcC-CC-EEEEecc
Q 022216          129 SEAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG-VN-RFILISS  182 (301)
Q Consensus       129 ~~~~~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~-~~-~iV~~SS  182 (301)
                      .+.+++ +|+|||+||...  .++....++.|..-...+.+.+++.. .. .+|.+|.
T Consensus        71 ~~~~~~-aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN  127 (323)
T cd00704          71 EEAFKD-VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN  127 (323)
T ss_pred             HHHhCC-CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            678888 999999999754  33455667889999999999998883 43 5555554

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.25  E-value=1.8e-06  Score=76.76  Aligned_cols=163  Identities=10%  Similarity=0.027  Sum_probs=99.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCCch--hhhccccCCCCeEEEE--ccCCCChHhHHHHhcC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDK--AKTTLSKDNPSLQIVK--ADVTEGSAKLSEAIGD  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~--~Dl~~~~~~~~~~~~~  134 (301)
                      .++|.|+|++|.+|..++-.|+..|.       +++++++....  +.....+.......+.  ..++.   ...+.+++
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~---~~~~~~~d   78 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITD---DPNVAFKD   78 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEec---CcHHHhCC
Confidence            46899999999999999999998874       68888875432  2221111000000000  01111   23567788


Q ss_pred             CCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC--CEEEEecccc---cccccCCCCCCcchh-hcchhhH
Q 022216          135 DSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV--NRFILISSIL---VNGAAMGQILNPAYI-FLNVFGL  206 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~--~~iV~~SS~~---~~~~~~~~~~~~~~~-~~~~~~~  206 (301)
                       .|+||.+||...  ..+....++.|..-...+.+.+++++.  ..+|.+|...   +|-.       .... ...+...
T Consensus        79 -aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~-------~k~sg~~p~~~V  150 (322)
T cd01338          79 -ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA-------MKNAPDIPPDNF  150 (322)
T ss_pred             -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH-------HHHcCCCChHhe
Confidence             999999999743  334556678899989999999988762  3555555421   0100       0011 0122334


Q ss_pred             HHHHHHHHHHHH----HHcCCcEEEEecCcccCCCCC
Q 022216          207 TLIAKLQAEQYI----RKSGINYTIIRPGGLRNEPPT  239 (301)
Q Consensus       207 y~~sK~~~e~~~----~~~~i~~~~irpg~v~~~~~~  239 (301)
                      |+.+++..+++-    +..|++...|+..+++|+...
T Consensus       151 iG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~  187 (322)
T cd01338         151 TAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP  187 (322)
T ss_pred             EEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc
Confidence            555666665433    357888888888788887644

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.24  E-value=5.8e-06  Score=73.58  Aligned_cols=105  Identities=11%  Similarity=0.073  Sum_probs=74.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCCchhhhccccCCCCeEEEEccCCCCh----------HhHHH
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS----------AKLSE  130 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~----------~~~~~  130 (301)
                      +|.|+|++|.+|..++..|+..|.       +++++++++...         .......|+.|..          ....+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~---------~a~g~~~Dl~d~~~~~~~~~~~~~~~~~   71 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK---------VLEGVVMELMDCAFPLLDGVVPTHDPAV   71 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc---------ccceeEeehhcccchhcCceeccCChHH
Confidence            589999999999999999998553       588888764431         1222334444411          13467


Q ss_pred             HhcCCCCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcC-C-CEEEEecc
Q 022216          131 AIGDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRG-V-NRFILISS  182 (301)
Q Consensus       131 ~~~~~~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~-~-~~iV~~SS  182 (301)
                      .+.+ +|+||++||....  +++...++.|+.-...+.+.+++.. . ..+|.+|.
T Consensus        72 ~~~~-aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        72 AFTD-VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             HhCC-CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            7888 9999999997543  3466777899999999999998873 4 45566554

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.15  E-value=2.9e-06  Score=65.76  Aligned_cols=76  Identities=22%  Similarity=0.366  Sum_probs=57.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchhhhccccC-CCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKD-NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ++++++++|.|+ |+.|+.++..|++.|.+ |+++.|+.++.+++.... ...+.++.  +.+    +.+.+.+ .|+||
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~--~~~----~~~~~~~-~DivI   80 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIP--LED----LEEALQE-ADIVI   80 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEE--GGG----HCHHHHT-ESEEE
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceee--HHH----HHHHHhh-CCeEE
Confidence            567999999998 99999999999999986 999999988877765422 22344443  333    4466777 99999


Q ss_pred             EccCCC
Q 022216          141 CATGFQ  146 (301)
Q Consensus       141 ~~Ag~~  146 (301)
                      ++.+..
T Consensus        81 ~aT~~~   86 (135)
T PF01488_consen   81 NATPSG   86 (135)
T ss_dssp             E-SSTT
T ss_pred             EecCCC
Confidence            997644

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.13  E-value=2.6e-05  Score=65.87  Aligned_cols=99  Identities=33%  Similarity=0.446  Sum_probs=74.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag~  145 (301)
                      |+++|.|+ |-+|..+|+.|.+.|++|++++++++...+... .......+.+|-+| .+.+.++ +.+ .|++|-..+-
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~-~~~~~~~v~gd~t~-~~~L~~agi~~-aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLA-DELDTHVVIGDATD-EDVLEEAGIDD-ADAVVAATGN   76 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh-hhcceEEEEecCCC-HHHHHhcCCCc-CCEEEEeeCC
Confidence            57889997 999999999999999999999999988776442 34678899999999 7888887 556 9999987653


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHH-HcCCCEEEEecc
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACR-KRGVNRFILISS  182 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~-~~~~~~iV~~SS  182 (301)
                      .         ++|.    -++..++ ..|++++|---.
T Consensus        77 d---------~~N~----i~~~la~~~~gv~~viar~~  101 (225)
T COG0569          77 D---------EVNS----VLALLALKEFGVPRVIARAR  101 (225)
T ss_pred             C---------HHHH----HHHHHHHHhcCCCcEEEEec
Confidence            2         2222    2444444 468777766444

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.07  E-value=1.2e-05  Score=62.77  Aligned_cols=107  Identities=19%  Similarity=0.202  Sum_probs=74.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      ++|.|+|++|.+|++++-.|+..+  .++++++++++..+....+       ......+..   .     ..+.+++ .|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~-----~~~~~~~-aD   71 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---G-----DYEALKD-AD   71 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---S-----SGGGGTT-ES
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---c-----ccccccc-cc
Confidence            589999999999999999999987  4799889886554332111       111222222   1     2335677 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      +||.+||...  .++....++.|..-...+.+.+++.+.+ .++.+|.
T Consensus        72 ivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN  119 (141)
T PF00056_consen   72 IVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN  119 (141)
T ss_dssp             EEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred             EEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence            9999999643  3445566788999999999999888753 4555543

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=98.07  E-value=0.0014  Score=51.31  Aligned_cols=196  Identities=16%  Similarity=0.117  Sum_probs=111.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCC--CChHhHH----HHhcC-CCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT--EGSAKLS----EAIGD-DSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~----~~~~~-~~d~  138 (301)
                      ..+|+|-||-|-+|+++++.|.+++|-|.-++-......       ..-.++..|-.  +.++++.    +.+.+ ++|.
T Consensus         3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-------d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa   75 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-------DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA   75 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-------cceEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence            468999999999999999999999998887765544311       12223333322  1123333    33444 8999


Q ss_pred             EEEccCCCCCC---------CCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          139 VVCATGFQPGW---------DLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       139 Vi~~Ag~~~~~---------~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      ||.-||--...         +.+.++..-+.....-...+.++ +.+-++-+....           +...+....-.|+
T Consensus        76 v~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAk-----------aAl~gTPgMIGYG  144 (236)
T KOG4022|consen   76 VFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAK-----------AALGGTPGMIGYG  144 (236)
T ss_pred             EEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccc-----------cccCCCCcccchh
Confidence            99988743221         11222222222111111112111 223344433321           1111122356789


Q ss_pred             HHHHHHHHHHHH-----cCC----cEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcC--CCCCCcE
Q 022216          209 IAKLQAEQYIRK-----SGI----NYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLH--PESSYKV  277 (301)
Q Consensus       209 ~sK~~~e~~~~~-----~~i----~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~--~~~~~~~  277 (301)
                      ..|.+..++.+.     .|+    -+..|-|-.+.+|+.+..+.    +.-+..|.+...+++..+.....  ....+..
T Consensus       145 MAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP----~ADfssWTPL~fi~e~flkWtt~~~RPssGsL  220 (236)
T KOG4022|consen  145 MAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMP----NADFSSWTPLSFISEHFLKWTTETSRPSSGSL  220 (236)
T ss_pred             HHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCC----CCcccCcccHHHHHHHHHHHhccCCCCCCCce
Confidence            999999887653     344    46678888899998776633    22234678888999888777643  2245666


Q ss_pred             EEeecC
Q 022216          278 VEIISR  283 (301)
Q Consensus       278 ~~v~~~  283 (301)
                      .++...
T Consensus       221 lqi~Tt  226 (236)
T KOG4022|consen  221 LQITTT  226 (236)
T ss_pred             EEEEec
Confidence            666654

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=98.06  E-value=1.7e-05  Score=64.65  Aligned_cols=99  Identities=14%  Similarity=0.206  Sum_probs=58.9

Q ss_pred             cCCeEEEEcC----------------CchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHh
Q 022216           65 KQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAK  127 (301)
Q Consensus        65 ~~~~vlVtGa----------------tG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~  127 (301)
                      +||+||||+|                ||-.|.++++++..+|++|+++.... ...     .+.++..+..+-.++ .+.
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~-~~~-----~p~~~~~i~v~sa~em~~~   75 (185)
T PF04127_consen    2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS-SLP-----PPPGVKVIRVESAEEMLEA   75 (185)
T ss_dssp             TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT-S---------TTEEEEE-SSHHHHHHH
T ss_pred             CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc-ccc-----ccccceEEEecchhhhhhh
Confidence            5777777764                79999999999999999999987663 211     235677776544331 156


Q ss_pred             HHHHhcCCCCEEEEccCCCCC-------C----CCCCceeeehHHHHHHHHHHH
Q 022216          128 LSEAIGDDSEAVVCATGFQPG-------W----DLFAPWKVDNFGTVNLVEACR  170 (301)
Q Consensus       128 ~~~~~~~~~d~Vi~~Ag~~~~-------~----~~~~~~~~N~~g~~~l~~a~~  170 (301)
                      +.+.+.+ .|++||+|++...       .    +-...+.+.+.-+-.+++.+.
T Consensus        76 ~~~~~~~-~Di~I~aAAVsDf~p~~~~~~KIkK~~~~~l~l~L~~~pkIL~~l~  128 (185)
T PF04127_consen   76 VKELLPS-ADIIIMAAAVSDFRPEEPAEGKIKKSSGDELTLELKPTPKILAELR  128 (185)
T ss_dssp             HHHHGGG-GSEEEE-SB--SEEESCHHSS-G---TT-CEEEEEEE-GGHGCCHH
T ss_pred             hccccCc-ceeEEEecchhheeehhccccccccccCcceEEEEEeChHHHHHHH
Confidence            6666777 8999999997541       1    112344555555666777774

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.99  E-value=8.8e-05  Score=66.46  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=74.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch---------------------hhh---cccc--CCCCe
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---------------------AKT---TLSK--DNPSL  114 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~---------------------~~~---~~~~--~~~~~  114 (301)
                      ..+++++|+|.|+ |++|.++++.|+..|. ++++++++.-.                     .+.   .+.+  ....+
T Consensus        20 ~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i   98 (338)
T PRK12475         20 RKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI   98 (338)
T ss_pred             HhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence            3567899999997 8999999999999997 78888876411                     000   0000  23456


Q ss_pred             EEEEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc
Q 022216          115 QIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (301)
Q Consensus       115 ~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~  187 (301)
                      +.+..|++.  +.+.+.+++ .|+||.+..             |...-..+-++|++.++ .+|+.+....+|
T Consensus        99 ~~~~~~~~~--~~~~~~~~~-~DlVid~~D-------------~~~~r~~in~~~~~~~i-p~i~~~~~g~~G  154 (338)
T PRK12475         99 VPVVTDVTV--EELEELVKE-VDLIIDATD-------------NFDTRLLINDLSQKYNI-PWIYGGCVGSYG  154 (338)
T ss_pred             EEEeccCCH--HHHHHHhcC-CCEEEEcCC-------------CHHHHHHHHHHHHHcCC-CEEEEEecccEE
Confidence            667777764  567788888 999998863             22333556778888875 577766655444

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.93  E-value=0.00014  Score=65.21  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=75.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchh---------------------hh---cccc--CCCCe
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKA---------------------KT---TLSK--DNPSL  114 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~---------------------~~---~~~~--~~~~~  114 (301)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++++.-+.                     +.   .+.+  ..-.+
T Consensus        20 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v   98 (339)
T PRK07688         20 QKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV   98 (339)
T ss_pred             HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence            4567889999998 9999999999999998 888888763111                     00   0000  22345


Q ss_pred             EEEEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc
Q 022216          115 QIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (301)
Q Consensus       115 ~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~  187 (301)
                      ..+..+++.  +.+.+.+++ .|+||.+..             |...-..+.++|.+.++ .+|+.++...||
T Consensus        99 ~~~~~~~~~--~~~~~~~~~-~DlVid~~D-------------n~~~r~~ln~~~~~~~i-P~i~~~~~g~~G  154 (339)
T PRK07688         99 EAIVQDVTA--EELEELVTG-VDLIIDATD-------------NFETRFIVNDAAQKYGI-PWIYGACVGSYG  154 (339)
T ss_pred             EEEeccCCH--HHHHHHHcC-CCEEEEcCC-------------CHHHHHHHHHHHHHhCC-CEEEEeeeeeee
Confidence            666667754  566777888 999998852             34445667888888875 678877666554

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.91  E-value=4.6e-05  Score=71.26  Aligned_cols=76  Identities=25%  Similarity=0.310  Sum_probs=55.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhcccc-CCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +++|+|+|+|+++ +|..+++.|++.|++|++.+++.. ...+.... ...++.++.+|..+      +..++ +|+||+
T Consensus         3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~-~d~vv~   74 (450)
T PRK14106          3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE------EFLEG-VDLVVV   74 (450)
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch------hHhhc-CCEEEE
Confidence            4689999999866 999999999999999999988752 22211110 12356777877765      23456 999999


Q ss_pred             ccCCCC
Q 022216          142 ATGFQP  147 (301)
Q Consensus       142 ~Ag~~~  147 (301)
                      ++|...
T Consensus        75 ~~g~~~   80 (450)
T PRK14106         75 SPGVPL   80 (450)
T ss_pred             CCCCCC
Confidence            998643

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.85  E-value=0.00049  Score=53.23  Aligned_cols=104  Identities=18%  Similarity=0.325  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcc----------------------c--cCCCCeEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL----------------------S--KDNPSLQIVKAD  120 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~----------------------~--~~~~~~~~~~~D  120 (301)
                      .++|+|.|+ |++|+++++.|+..|. ++++++.+.-....+.                      .  .+..++..+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            578999997 9999999999999997 6777776542211100                      0  023456677777


Q ss_pred             CCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc
Q 022216          121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (301)
Q Consensus       121 l~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~  187 (301)
                      ++  .+.+.+.+++ +|+||.|..             |...-..+.+.|++.+. .+|+.+....+|
T Consensus        81 ~~--~~~~~~~~~~-~d~vi~~~d-------------~~~~~~~l~~~~~~~~~-p~i~~~~~g~~G  130 (135)
T PF00899_consen   81 ID--EENIEELLKD-YDIVIDCVD-------------SLAARLLLNEICREYGI-PFIDAGVNGFYG  130 (135)
T ss_dssp             CS--HHHHHHHHHT-SSEEEEESS-------------SHHHHHHHHHHHHHTT--EEEEEEEETTEE
T ss_pred             cc--cccccccccC-CCEEEEecC-------------CHHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence            73  4667788888 999999863             24445667888888875 788877664443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.81  E-value=4.2e-05  Score=67.80  Aligned_cols=106  Identities=18%  Similarity=0.218  Sum_probs=74.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccC-------CCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKD-------NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      ++|.|.|+ |++|+.++..|+..|  ++|++++|++++.+.+..+.       .....+..   .+     .+.+.+ .|
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~-----~~~l~~-aD   70 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GD-----YSDCKD-AD   70 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CC-----HHHhCC-CC
Confidence            47899996 999999999999999  58999999887755433211       11222221   22     123577 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      +||+++|...  ..+....++.|..-...+.+.+++.+.+ .+|.+|.
T Consensus        71 IVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          71 IVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            9999999643  3344566778888889999999887643 5566554

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.79  E-value=0.0003  Score=58.39  Aligned_cols=107  Identities=18%  Similarity=0.214  Sum_probs=70.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhh-------------------h---cccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAK-------------------T---TLSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~-------------------~---~~~~--~~~~~~~  116 (301)
                      ..+++++|+|.|+ |++|.++++.|+..|. ++++++++.-...                   .   ...+  +..+++.
T Consensus        17 ~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~   95 (202)
T TIGR02356        17 QRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA   95 (202)
T ss_pred             HHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            3567899999996 9999999999999996 7888877631110                   0   0011  1223444


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~  186 (301)
                      +..++.  .+.+.+.+++ .|+||.+..             |...-..+-+.|++.++ .+|+.+....+
T Consensus        96 ~~~~i~--~~~~~~~~~~-~D~Vi~~~d-------------~~~~r~~l~~~~~~~~i-p~i~~~~~g~~  148 (202)
T TIGR02356        96 LKERVT--AENLELLINN-VDLVLDCTD-------------NFATRYLINDACVALGT-PLISAAVVGFG  148 (202)
T ss_pred             ehhcCC--HHHHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEeccCe
Confidence            444454  3567778888 999998863             23334557788888875 57776655443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=97.77  E-value=0.00042  Score=64.97  Aligned_cols=222  Identities=19%  Similarity=0.159  Sum_probs=125.3

Q ss_pred             cccCCeEEEEcCC-chHHHHHHHHHHHCCCeEEEEEeCCchh-hh----cccc---CCCCeEEEEccCCCC--hHhHHHH
Q 022216           63 SVKQKKIFVAGAT-GSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT----TLSK---DNPSLQIVKADVTEG--SAKLSEA  131 (301)
Q Consensus        63 ~~~~~~vlVtGat-G~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~----~~~~---~~~~~~~~~~Dl~~~--~~~~~~~  131 (301)
                      ...++.+|||||+ |.||.+++..|++-|++|++..-+-++. .+    +...   ....+-++..+..+.  -+.+.+-
T Consensus       393 ~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIew  472 (866)
T COG4982         393 TYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEW  472 (866)
T ss_pred             CcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHH
Confidence            3467999999986 7899999999999999999986554432 11    1111   234455666666541  3444443


Q ss_pred             hcC-----------------CCCEEEEccCCCCCCC-------CCCceeeehHHHHHHHHHHHHcC----C---CEEEEe
Q 022216          132 IGD-----------------DSEAVVCATGFQPGWD-------LFAPWKVDNFGTVNLVEACRKRG----V---NRFILI  180 (301)
Q Consensus       132 ~~~-----------------~~d~Vi~~Ag~~~~~~-------~~~~~~~N~~g~~~l~~a~~~~~----~---~~iV~~  180 (301)
                      +.+                 .+|.+|-+|++.-..+       .+..+++-+...++++-.+++.+    +   -++|..
T Consensus       473 Ig~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLP  552 (866)
T COG4982         473 IGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLP  552 (866)
T ss_pred             hccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEec
Confidence            321                 3678888887543211       12233444555566666665543    2   256776


Q ss_pred             cccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc----C----CcEEEEecCcccCC--CCCCceeecccccc
Q 022216          181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS----G----INYTIIRPGGLRNE--PPTGNIIMETEDTL  250 (301)
Q Consensus       181 SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~----~----i~~~~irpg~v~~~--~~~~~~~~~~~~~~  250 (301)
                      .|..     .+        -+-.-+.|+.+|++.|.++.+.    +    +.++--+.||+.|.  |..+.++....+..
T Consensus       553 gSPN-----rG--------~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg~Ndiiv~aiEk~  619 (866)
T COG4982         553 GSPN-----RG--------MFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMGHNDIIVAAIEKA  619 (866)
T ss_pred             CCCC-----CC--------ccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccCCcchhHHHHHHh
Confidence            6642     11        1112378999999999776431    1    22233455666665  33344444333333


Q ss_pred             ccCCCCHHHHHHHHHHHhcCC-----CCCCcEEEeecCCCCCCcCHHHHHHH
Q 022216          251 YEGTISRDQVAEVAVEALLHP-----ESSYKVVEIISRVDAPKRSYEDLFGS  297 (301)
Q Consensus       251 ~~~~v~~~Dva~~~~~~l~~~-----~~~~~~~~v~~~~~~~~~s~~e~~~~  297 (301)
                      -....+.+++|.-++.++...     .....++++.++=+.-+..+.+++..
T Consensus       620 GV~tyS~~EmA~~LLgL~saev~e~a~~~PI~aDLtGGL~~~~~~~a~~A~~  671 (866)
T COG4982         620 GVRTYSTDEMAFNLLGLASAEVVELAASSPITADLTGGLGEVPLLKAELAAL  671 (866)
T ss_pred             CceecCHHHHHHHHHhhccHHHHHHHhcCCeEeeccCccccchhhHHHHHHH
Confidence            223456777777665444211     13456677777544455666666544

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.75  E-value=0.00038  Score=70.46  Aligned_cols=77  Identities=22%  Similarity=0.284  Sum_probs=61.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC-Ce-------------EEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHH
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FA-------------VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE  130 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~  130 (301)
                      ++|+|+|.|+ |++|+.+++.|++.+ ++             |.+.+++.+..+++.. ..+++..+..|++| .+++.+
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~-~~~~~~~v~lDv~D-~e~L~~  644 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE-GIENAEAVQLDVSD-SESLLK  644 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH-hcCCCceEEeecCC-HHHHHH
Confidence            4789999997 999999999998763 33             7777777766665543 22467889999999 899999


Q ss_pred             HhcCCCCEEEEccCC
Q 022216          131 AIGDDSEAVVCATGF  145 (301)
Q Consensus       131 ~~~~~~d~Vi~~Ag~  145 (301)
                      .+++ +|+||++...
T Consensus       645 ~v~~-~DaVIsalP~  658 (1042)
T PLN02819        645 YVSQ-VDVVISLLPA  658 (1042)
T ss_pred             hhcC-CCEEEECCCc
Confidence            9999 9999999864

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.75  E-value=9.1e-05  Score=65.65  Aligned_cols=111  Identities=12%  Similarity=0.131  Sum_probs=72.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCC--chhhhccccCCC-----CeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDL--DKAKTTLSKDNP-----SLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~--~~~~~~~~~~~~-----~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |+|.|+|++|.+|..++..|+..|.  +|++++|+.  +++.....+...     +.. .....++   . .+.+.+ .|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~-~~i~~~~---d-~~~l~~-aD   74 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGID-AEIKISS---D-LSDVAG-SD   74 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCC-cEEEECC---C-HHHhCC-CC
Confidence            5899999999999999999999986  589889854  333221110000     000 0111122   1 234788 99


Q ss_pred             EEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEeccc
Q 022216          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSI  183 (301)
Q Consensus       138 ~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~  183 (301)
                      +||.++|....  .+....++.|..-...+++.+.+.+. ..+|.+++.
T Consensus        75 iViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np  123 (309)
T cd05294          75 IVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP  123 (309)
T ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            99999996543  23344567788888888888877653 367777764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.72  E-value=0.00037  Score=62.54  Aligned_cols=93  Identities=17%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC---eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|+|.||||++|+++++.|.++|+   +++.+.+..+..+.+.-   .+......|+.+  .    .+.+ +|+||.+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~---~g~~i~v~d~~~--~----~~~~-vDvVf~A   70 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF---KGKELKVEDLTT--F----DFSG-VDIALFS   70 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee---CCceeEEeeCCH--H----HHcC-CCEEEEC
Confidence            46899999999999999999999876   45777766544333211   123344445543  1    3457 9999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +|..              -+..+...+.+.|+ ++|=.|+.
T Consensus        71 ~g~g--------------~s~~~~~~~~~~G~-~VIDlS~~   96 (334)
T PRK14874         71 AGGS--------------VSKKYAPKAAAAGA-VVIDNSSA   96 (334)
T ss_pred             CChH--------------HHHHHHHHHHhCCC-EEEECCch
Confidence            8632              14555666666665 66666664

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.71  E-value=0.00014  Score=64.67  Aligned_cols=115  Identities=13%  Similarity=0.100  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCCc--hhhhccccCCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLD--KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      ..+|.|+|++|.+|++++-.|+..|.       +++++++++.  .+.....+..........+..- .....+.+++ .
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~~~~~~~~~d-a   80 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA-TTDPEEAFKD-V   80 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE-ecChHHHhCC-C
Confidence            46899999999999999999998874       7888887542  2221111000000000001100 1123567788 9


Q ss_pred             CEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-C-EEEEecc
Q 022216          137 EAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-N-RFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~-~iV~~SS  182 (301)
                      |+||.+||...  .++....+..|..-...+.+.+++.+. + .++.+|.
T Consensus        81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  130 (323)
T TIGR01759        81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN  130 (323)
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            99999999743  345556678899999999999988864 4 4555543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.71  E-value=0.00029  Score=65.87  Aligned_cols=73  Identities=22%  Similarity=0.299  Sum_probs=61.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      |+|+|.|+ |.+|+++++.|.+.|++|++++++++..+.+..  ..++.++.+|.++ .+.+.++ +.+ +|.||.+..
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~--~~~~~~~~gd~~~-~~~l~~~~~~~-a~~vi~~~~   74 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD--RLDVRTVVGNGSS-PDVLREAGAED-ADLLIAVTD   74 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh--hcCEEEEEeCCCC-HHHHHHcCCCc-CCEEEEecC
Confidence            57999998 999999999999999999999998887665431  2468899999998 7778777 677 999998763

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=6.9e-05  Score=65.13  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=62.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      ..++|-||+||.|..++++|+.+|.+-.+..|+..++..+....+++...+.+  .+ ++.+.+...+ .++|+||+|+-
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~--~~-p~~~~~~~~~-~~VVlncvGPy   82 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPL--GV-PAALEAMASR-TQVVLNCVGPY   82 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCC--CC-HHHHHHHHhc-ceEEEeccccc
Confidence            56899999999999999999999998888899999888766444455544444  34 6788889999 99999999964

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.70  E-value=0.00019  Score=65.32  Aligned_cols=100  Identities=20%  Similarity=0.296  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHH-HHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLS-EAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~~~d~Vi~~A  143 (301)
                      .++|.|.||||++|.++++.|+++ +.+|..+.++.+..+.... .  .......|+.+ .+.+. +.+.+ +|+||.+.
T Consensus        38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~-~--~~~l~~~~~~~-~~~~~~~~~~~-~DvVf~Al  112 (381)
T PLN02968         38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS-V--FPHLITQDLPN-LVAVKDADFSD-VDAVFCCL  112 (381)
T ss_pred             ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh-h--CccccCccccc-eecCCHHHhcC-CCEEEEcC
Confidence            579999999999999999999999 5799988876443222111 1  11122234433 22222 22577 99999987


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~  186 (301)
                      +.              .....++.++ +.+ .++|-.|+..-+
T Consensus       113 p~--------------~~s~~i~~~~-~~g-~~VIDlSs~fRl  139 (381)
T PLN02968        113 PH--------------GTTQEIIKAL-PKD-LKIVDLSADFRL  139 (381)
T ss_pred             CH--------------HHHHHHHHHH-hCC-CEEEEcCchhcc
Confidence            52              1466777776 345 589999987644

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.69  E-value=0.00015  Score=64.05  Aligned_cols=112  Identities=17%  Similarity=0.131  Sum_probs=75.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ++|.|+|++|.+|++++-.|+..|  .++++++++  ..+....+   ......+....  . .+++.+.+++ .|+||.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~--~-~~~~y~~~~d-aDivvi   74 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYL--G-PEELKKALKG-ADVVVI   74 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEec--C-CCchHHhcCC-CCEEEE
Confidence            589999999999999999999888  478888876  22211111   11111111110  1 1236678889 999999


Q ss_pred             ccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecccc
Q 022216          142 ATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~~  184 (301)
                      +||...  .++....++.|..-...+++..++++. ..+|.+|...
T Consensus        75 taG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv  120 (310)
T cd01337          75 PAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV  120 (310)
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            999743  345566778999999999999988874 3566666543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.68  E-value=0.00011  Score=65.16  Aligned_cols=108  Identities=17%  Similarity=0.194  Sum_probs=75.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccC------CCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKD------NPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      ++++|.|+|+ |.+|..++-.|+..|.  ++++++++.+.+.....+.      ..++.+..   .+     .+.+++ .
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~---~~-----~~~~~~-a   74 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA---GD-----YSDCKD-A   74 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe---CC-----HHHhCC-C
Confidence            4679999998 9999999999999986  7998898776644322111      01222221   11     345788 9


Q ss_pred             CEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          137 EAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      |+||.+||...  ..+....++.|..-...+++.+++.+.+ .+|.+|-
T Consensus        75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            99999999743  3445566788988888989988887653 5555554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.60  E-value=0.00099  Score=49.88  Aligned_cols=92  Identities=26%  Similarity=0.349  Sum_probs=66.9

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccCCCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATGFQP  147 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag~~~  147 (301)
                      |+|.|. |.+|..+++.|.+.+.+|+++.++++..+++..   .++.++.+|.+| .+.+.++ +.+ .+.||-+..   
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~---~~~~~i~gd~~~-~~~l~~a~i~~-a~~vv~~~~---   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELRE---EGVEVIYGDATD-PEVLERAGIEK-ADAVVILTD---   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH---TTSEEEES-TTS-HHHHHHTTGGC-ESEEEEESS---
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh---cccccccccchh-hhHHhhcCccc-cCEEEEccC---
Confidence            678887 799999999999977799999999887776653   458899999999 7777765 344 888887764   


Q ss_pred             CCCCCCceeeehHHHHHHHHHHHHcC-CCEEEE
Q 022216          148 GWDLFAPWKVDNFGTVNLVEACRKRG-VNRFIL  179 (301)
Q Consensus       148 ~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~  179 (301)
                                |-.....++..+++.+ ..+++.
T Consensus        72 ----------~d~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   72 ----------DDEENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             ----------SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             ----------CHHHHHHHHHHHHHHCCCCeEEE
Confidence                      2233455677777644 345554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.57  E-value=0.001  Score=56.37  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=69.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~  116 (301)
                      ..+++++|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                      +.+  +..+++.
T Consensus        17 ~~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~   95 (228)
T cd00757          17 EKLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA   95 (228)
T ss_pred             HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            3566889999996 9999999999999996 666665442111100                      000  1234556


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +..+++  .+.+.+.+++ +|+||.|...             ...-..+-++|.+.++ .+|+.+...
T Consensus        96 ~~~~i~--~~~~~~~~~~-~DvVi~~~d~-------------~~~r~~l~~~~~~~~i-p~i~~g~~g  146 (228)
T cd00757          96 YNERLD--AENAEELIAG-YDLVLDCTDN-------------FATRYLINDACVKLGK-PLVSGAVLG  146 (228)
T ss_pred             ecceeC--HHHHHHHHhC-CCEEEEcCCC-------------HHHHHHHHHHHHHcCC-CEEEEEecc
Confidence            655663  3567777888 9999998741             2334567778888875 677765544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.56  E-value=0.0014  Score=55.93  Aligned_cols=107  Identities=19%  Similarity=0.229  Sum_probs=67.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~  116 (301)
                      ..+++.+|+|.|+ |++|..+++.|+..|. ++++++.+.-....+                      +.+  +..+++.
T Consensus        20 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~   98 (240)
T TIGR02355        20 EALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP   98 (240)
T ss_pred             HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            3567889999997 9999999999999996 677766654221110                      000  1223344


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~  186 (301)
                      +...++  .+.+.+.+.+ .|+||.+..             |...-..+-++|.+.++ .+|+.++...+
T Consensus        99 ~~~~i~--~~~~~~~~~~-~DlVvd~~D-------------~~~~r~~ln~~~~~~~i-p~v~~~~~g~~  151 (240)
T TIGR02355        99 INAKLD--DAELAALIAE-HDIVVDCTD-------------NVEVRNQLNRQCFAAKV-PLVSGAAIRME  151 (240)
T ss_pred             EeccCC--HHHHHHHhhc-CCEEEEcCC-------------CHHHHHHHHHHHHHcCC-CEEEEEecccE
Confidence            433333  2456667777 888888763             23334556788888875 67775554433

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05442 malate dehydrogenase; Provisional

Probab=97.55  E-value=0.0005  Score=61.25  Aligned_cols=113  Identities=9%  Similarity=0.066  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCCch--hhhccccCCCCe-EEE-EccCCCChHhHHHHhcC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDK--AKTTLSKDNPSL-QIV-KADVTEGSAKLSEAIGD  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~-~~Dl~~~~~~~~~~~~~  134 (301)
                      .++|.|+|++|.+|..++-.|+..|.       +++++++++..  +.....+..... .+. ...++   ....+.+++
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~---~~~y~~~~d   80 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT---DDPNVAFKD   80 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe---cChHHHhCC
Confidence            56999999999999999999988763       68888875432  221111000000 000 00111   123567788


Q ss_pred             CCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecc
Q 022216          135 DSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISS  182 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS  182 (301)
                       .|+||.+||...  .++....++.|..-...+.+..+++.  -..+|.+|.
T Consensus        81 -aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  131 (326)
T PRK05442         81 -ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN  131 (326)
T ss_pred             -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence             999999999643  34555667889999999999998843  345666664

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.54  E-value=0.0002  Score=56.69  Aligned_cols=75  Identities=21%  Similarity=0.309  Sum_probs=52.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++++++|+|+ |.+|..+++.|++.| .+|++.+|++++.+++.......  .+..+..+    ..+.+.+ +|+||++
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~-~Dvvi~~   88 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL--GIAIAYLD----LEELLAE-ADLIINT   88 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc--ccceeecc----hhhcccc-CCEEEeC
Confidence            45789999998 999999999999996 78999999887765543211111  11223334    2333677 9999999


Q ss_pred             cCCC
Q 022216          143 TGFQ  146 (301)
Q Consensus       143 Ag~~  146 (301)
                      ....
T Consensus        89 ~~~~   92 (155)
T cd01065          89 TPVG   92 (155)
T ss_pred             cCCC
Confidence            8643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.52  E-value=0.00021  Score=62.39  Aligned_cols=75  Identities=24%  Similarity=0.351  Sum_probs=52.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++++++|+|+ |++|++++..|++.| .+|++..|+.++.+++........ .+..++ +    ..+.+.+ .|+|||
T Consensus       120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~-~----~~~~~~~-~DivIn  191 (278)
T PRK00258        120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG-KAELDL-E----LQEELAD-FDLIIN  191 (278)
T ss_pred             CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecc-c----chhcccc-CCEEEE
Confidence            457899999997 999999999999999 799999999887765543211110 011111 1    2344566 999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      +...
T Consensus       192 aTp~  195 (278)
T PRK00258        192 ATSA  195 (278)
T ss_pred             CCcC
Confidence            8753

>PRK08223 hypothetical protein; Validated

Probab=97.52  E-value=0.0017  Score=56.39  Aligned_cols=107  Identities=12%  Similarity=0.200  Sum_probs=69.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~  116 (301)
                      ..++..+|+|.|+ |++|..+++.|+..|. ++++++.+.-....+                      ..+  ...+++.
T Consensus        23 ~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~  101 (287)
T PRK08223         23 QRLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA  101 (287)
T ss_pred             HHHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence            4567899999998 9999999999999996 677776653211110                      000  2234555


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +...++.  +.+.+.+++ +|+||.+.-.           .++..-..+-++|++.++ .+|+.+...
T Consensus       102 ~~~~l~~--~n~~~ll~~-~DlVvD~~D~-----------~~~~~r~~ln~~c~~~~i-P~V~~~~~g  154 (287)
T PRK08223        102 FPEGIGK--ENADAFLDG-VDVYVDGLDF-----------FEFDARRLVFAACQQRGI-PALTAAPLG  154 (287)
T ss_pred             EecccCc--cCHHHHHhC-CCEEEECCCC-----------CcHHHHHHHHHHHHHcCC-CEEEEeccC
Confidence            5555654  456777788 8988865421           122334667788888885 577765543

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.50  E-value=0.00061  Score=60.30  Aligned_cols=112  Identities=18%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhc-cccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT-LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +|.|+|++|.+|.+++-.|+..|.  +++++++++...+.+ +........+....  + .+++.+.+++ .|+||.+||
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~--~-~~~~~~~~~d-aDivvitaG   76 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFS--G-EEGLENALKG-ADVVVIPAG   76 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEec--C-CCchHHHcCC-CCEEEEeCC
Confidence            588999999999999999998874  788888766211110 00011111111100  1 1235678889 999999999


Q ss_pred             CCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEeccc
Q 022216          145 FQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSI  183 (301)
Q Consensus       145 ~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~  183 (301)
                      ...  ..+....+..|..-...+.+..++.+.+ .+|.+|..
T Consensus        77 ~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        77 VPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             CCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            643  3455667788999889999999887643 55666554

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.50  E-value=0.0012  Score=61.66  Aligned_cols=104  Identities=21%  Similarity=0.329  Sum_probs=73.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      ...++++|.|+ |.+|+.+++.|.+.|++|++++++++..+.+.. ...++.++.+|.++ .+.+.++--.+.|.||-+.
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~-~~~~~~~i~gd~~~-~~~L~~~~~~~a~~vi~~~  305 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAE-ELPNTLVLHGDGTD-QELLEEEGIDEADAFIALT  305 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HCCCCeEEECCCCC-HHHHHhcCCccCCEEEECC
Confidence            34689999998 999999999999999999999999877665443 22467889999999 6666554322389998654


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      .-    +     +.|+.    ++..+++.+..++|.....
T Consensus       306 ~~----~-----~~n~~----~~~~~~~~~~~~ii~~~~~  332 (453)
T PRK09496        306 ND----D-----EANIL----SSLLAKRLGAKKVIALVNR  332 (453)
T ss_pred             CC----c-----HHHHH----HHHHHHHhCCCeEEEEECC
Confidence            31    1     23433    3445566666666665443

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.49  E-value=0.003  Score=47.85  Aligned_cols=94  Identities=21%  Similarity=0.270  Sum_probs=55.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCc-hhhhccccCC--CCe-EEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLD-KAKTTLSKDN--PSL-QIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~-~~~~~~~~~~--~~~-~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +|.|+||||++|+.+++.|+++. .+++.+..+.. ....+....+  ... ....-| .+ .    +.+.+ +|+||.|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~-~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-AD-P----EELSD-VDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-TS-G----HHHTT-ESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-cc-h----hHhhc-CCEEEec
Confidence            68999999999999999999974 46555544433 2222111000  111 111112 23 2    23367 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      .+              -.....+.+.+.+.|+ ++|=.|+.
T Consensus        74 ~~--------------~~~~~~~~~~~~~~g~-~ViD~s~~   99 (121)
T PF01118_consen   74 LP--------------HGASKELAPKLLKAGI-KVIDLSGD   99 (121)
T ss_dssp             SC--------------HHHHHHHHHHHHHTTS-EEEESSST
T ss_pred             Cc--------------hhHHHHHHHHHhhCCc-EEEeCCHH
Confidence            74              2235667777777776 66666665

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.49  E-value=0.0019  Score=55.29  Aligned_cols=104  Identities=18%  Similarity=0.240  Sum_probs=68.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhh----------------------cccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~----------------------~~~~--~~~~~~~  116 (301)
                      ..++.++|+|.|+ |++|.++++.|+..|. ++++++.+.-....                      .+.+  +..+++.
T Consensus        28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~  106 (245)
T PRK05690         28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET  106 (245)
T ss_pred             HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            4567899999998 9999999999999996 67777654311110                      0001  2234555


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +...+++  +.+.+.+++ +|+||.+..             |...-..+-++|++.++ .+|+.++.
T Consensus       107 ~~~~i~~--~~~~~~~~~-~DiVi~~~D-------------~~~~r~~ln~~~~~~~i-p~v~~~~~  156 (245)
T PRK05690        107 INARLDD--DELAALIAG-HDLVLDCTD-------------NVATRNQLNRACFAAKK-PLVSGAAI  156 (245)
T ss_pred             EeccCCH--HHHHHHHhc-CCEEEecCC-------------CHHHHHHHHHHHHHhCC-EEEEeeec
Confidence            5555543  456777888 999998863             23334557778888874 57765444

>PRK08328 hypothetical protein; Provisional

Probab=97.49  E-value=0.0022  Score=54.42  Aligned_cols=109  Identities=14%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcc-----------------------cc--CCCCeE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL-----------------------SK--DNPSLQ  115 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~-----------------------~~--~~~~~~  115 (301)
                      ..+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.-+...+.                       ..  +...+.
T Consensus        23 ~~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~  101 (231)
T PRK08328         23 EKLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIE  101 (231)
T ss_pred             HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEE
Confidence            3556889999997 9999999999999996 6777765432111100                       00  223344


Q ss_pred             EEEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccc
Q 022216          116 IVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (301)
Q Consensus       116 ~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~  188 (301)
                      .+...++  ++.+.+.+++ .|+||.|..             |...-..+-++|++.++ .+|+.++...||.
T Consensus       102 ~~~~~~~--~~~~~~~l~~-~D~Vid~~d-------------~~~~r~~l~~~~~~~~i-p~i~g~~~g~~G~  157 (231)
T PRK08328        102 TFVGRLS--EENIDEVLKG-VDVIVDCLD-------------NFETRYLLDDYAHKKGI-PLVHGAVEGTYGQ  157 (231)
T ss_pred             EEeccCC--HHHHHHHHhc-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEeeccCEEE
Confidence            4444443  3456667777 888888763             22333455677888875 6787776655543

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.49  E-value=0.00041  Score=60.89  Aligned_cols=112  Identities=18%  Similarity=0.194  Sum_probs=73.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEE--ccCCCChHhHHHHhcCCCCEEEEc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVK--ADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      ++|.|+|+ |+||+.++-.|+..+  .+++++++..+..+-...+......+..  ..+.. ... .+.+++ .|+||-+
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~-aDiVvit   76 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKG-ADIVVIT   76 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcC-CCEEEEe
Confidence            57999999 999999999998876  3888888885443322211111111111  11111 011 456788 9999999


Q ss_pred             cCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          143 TGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       143 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ||...  ..+....++.|..-...+.+...+.+.+-++.+-|
T Consensus        77 AG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt  118 (313)
T COG0039          77 AGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT  118 (313)
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence            98643  44566778899999999999998887644444443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.46  E-value=0.0014  Score=59.85  Aligned_cols=104  Identities=20%  Similarity=0.275  Sum_probs=67.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC-------------------chhhhc---ccc--CCCCeEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL-------------------DKAKTT---LSK--DNPSLQIV  117 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~-------------------~~~~~~---~~~--~~~~~~~~  117 (301)
                      .+++++|+|.|+ |++|.++++.|+..|. ++++++++.                   .+.+..   +.+  ....+..+
T Consensus       132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  210 (376)
T PRK08762        132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV  210 (376)
T ss_pred             HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            457889999987 9999999999999997 788877762                   111111   101  11234444


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ...+++  +.+.+.+++ .|+||++..             |...-..+-++|++.++ .+|+.+...
T Consensus       211 ~~~~~~--~~~~~~~~~-~D~Vv~~~d-------------~~~~r~~ln~~~~~~~i-p~i~~~~~g  260 (376)
T PRK08762        211 QERVTS--DNVEALLQD-VDVVVDGAD-------------NFPTRYLLNDACVKLGK-PLVYGAVFR  260 (376)
T ss_pred             eccCCh--HHHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEecc
Confidence            444443  456777888 999999863             12223457778888875 677765543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.46  E-value=0.002  Score=53.90  Aligned_cols=105  Identities=23%  Similarity=0.285  Sum_probs=67.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC---chhhh------------------cccc--CCCCeEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL---DKAKT------------------TLSK--DNPSLQIV  117 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~---~~~~~------------------~~~~--~~~~~~~~  117 (301)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++.+.   +.+..                  .+..  ...+++.+
T Consensus        24 ~~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~  102 (212)
T PRK08644         24 EKLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAH  102 (212)
T ss_pred             HHHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            3567889999997 9999999999999997 588877762   11110                  0000  22344445


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSIL  184 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~  184 (301)
                      ...+++  +.+.+.+++ +|+||.|..             |...-..+.+.+.+. +. .+|+.+...
T Consensus       103 ~~~i~~--~~~~~~~~~-~DvVI~a~D-------------~~~~r~~l~~~~~~~~~~-p~I~~~~~~  153 (212)
T PRK08644        103 NEKIDE--DNIEELFKD-CDIVVEAFD-------------NAETKAMLVETVLEHPGK-KLVAASGMA  153 (212)
T ss_pred             eeecCH--HHHHHHHcC-CCEEEECCC-------------CHHHHHHHHHHHHHhCCC-CEEEeehhh
Confidence            555543  455667777 898888742             233345667777776 64 677665443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.45  E-value=0.0031  Score=52.18  Aligned_cols=110  Identities=22%  Similarity=0.361  Sum_probs=70.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc------------------------ccc--CCCCeE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT------------------------LSK--DNPSLQ  115 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~------------------------~~~--~~~~~~  115 (301)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                        +.+  +..+++
T Consensus        16 ~L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~   94 (198)
T cd01485          16 KLRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS   94 (198)
T ss_pred             HHhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence            456789999998 6699999999999996 577777653211110                        000  223445


Q ss_pred             EEEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccc
Q 022216          116 IVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (301)
Q Consensus       116 ~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~  188 (301)
                      .+..++.+..+...+.+++ +|+||.+-.             |......+-+.|++.++ .+|+.++.+.||.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~-~dvVi~~~d-------------~~~~~~~ln~~c~~~~i-p~i~~~~~G~~G~  152 (198)
T cd01485          95 IVEEDSLSNDSNIEEYLQK-FTLVIATEE-------------NYERTAKVNDVCRKHHI-PFISCATYGLIGY  152 (198)
T ss_pred             EEecccccchhhHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEeecCEEE
Confidence            5555554213445566777 888886632             23345667788888885 6888887766654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.44  E-value=0.0018  Score=58.51  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=69.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~  116 (301)
                      ..+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                      +.+  +..+++.
T Consensus        24 ~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~  102 (355)
T PRK05597         24 QSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV  102 (355)
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence            4567899999998 9999999999999996 677777653111100                      001  2234555


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +...++.  +...+.+++ +|+||.+..             |...-..+-++|.+.++ .+|+.++..
T Consensus       103 ~~~~i~~--~~~~~~~~~-~DvVvd~~d-------------~~~~r~~~n~~c~~~~i-p~v~~~~~g  153 (355)
T PRK05597        103 SVRRLTW--SNALDELRD-ADVILDGSD-------------NFDTRHLASWAAARLGI-PHVWASILG  153 (355)
T ss_pred             EEeecCH--HHHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEEec
Confidence            5556653  456677888 999998873             23333456677888775 577665543

>PRK04148 hypothetical protein; Provisional

Probab=97.43  E-value=0.00098  Score=51.07  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=70.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +++++++.|. | .|.++++.|.+.|++|++++.++...+....   ..+.++.+|+.++.-++   .++ .|.|+-.  
T Consensus        16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~---~~~~~v~dDlf~p~~~~---y~~-a~liysi--   84 (134)
T PRK04148         16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK---LGLNAFVDDLFNPNLEI---YKN-AKLIYSI--   84 (134)
T ss_pred             cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH---hCCeEEECcCCCCCHHH---Hhc-CCEEEEe--
Confidence            4678999997 5 8999999999999999999999887665543   46799999999954444   445 8888754  


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                       .++.+          -...+++.+++.++.-+|..
T Consensus        85 -rpp~e----------l~~~~~~la~~~~~~~~i~~  109 (134)
T PRK04148         85 -RPPRD----------LQPFILELAKKINVPLIIKP  109 (134)
T ss_pred             -CCCHH----------HHHHHHHHHHHcCCCEEEEc
Confidence             22211          23568888999887666654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.41  E-value=0.00066  Score=59.51  Aligned_cols=72  Identities=21%  Similarity=0.276  Sum_probs=54.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +.+.+++++|+|. |.+|+.+++.|.+.|.+|++..|+++.......   .+...+     + .+.+.+.+.+ .|+||+
T Consensus       147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~---~g~~~~-----~-~~~l~~~l~~-aDiVin  215 (287)
T TIGR02853       147 FTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITE---MGLIPF-----P-LNKLEEKVAE-IDIVIN  215 (287)
T ss_pred             CCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---CCCeee-----c-HHHHHHHhcc-CCEEEE
Confidence            3567899999998 889999999999999999999998766544321   122211     1 3446777888 999999


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      +..
T Consensus       216 t~P  218 (287)
T TIGR02853       216 TIP  218 (287)
T ss_pred             CCC
Confidence            863

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=97.36  E-value=0.00035  Score=69.75  Aligned_cols=158  Identities=16%  Similarity=0.192  Sum_probs=99.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEE-EEeCCchh--hh----ccccCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLDKA--KT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~-~~r~~~~~--~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      -..|..+|+||-|+.|.+++..|.++|++-.+ ..|+.-+.  +.    .....+-.+.+-..|++. .+...+.+..  
T Consensus      1766 hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt-~~ga~~Li~~s~ 1844 (2376)
T KOG1202|consen 1766 HPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITT-AEGARGLIEESN 1844 (2376)
T ss_pred             CccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchh-hhhHHHHHHHhh
Confidence            34689999999999999999999999986444 46654321  10    111122334444466665 4444444432  


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                         .+-.|||.|.+..+        +++...-+.-+.||.||=++.++..  .+-||..||.+.--.+.+          
T Consensus      1845 kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~G---------- 1914 (2376)
T KOG1202|consen 1845 KLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAG---------- 1914 (2376)
T ss_pred             hcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCc----------
Confidence               47889999987543        2333334555667777777777654  468999999863211112          


Q ss_pred             chhhHHHHHHHHHHHHHH---HcCCcEEEEecCccc
Q 022216          202 NVFGLTLIAKLQAEQYIR---KSGINYTIIRPGGLR  234 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~---~~~i~~~~irpg~v~  234 (301)
                        ...||.+..++|+..+   ..|++-+.|.=|.|-
T Consensus      1915 --QtNYG~aNS~MERiceqRr~~GfPG~AiQWGAIG 1948 (2376)
T KOG1202|consen 1915 --QTNYGLANSAMERICEQRRHEGFPGTAIQWGAIG 1948 (2376)
T ss_pred             --ccccchhhHHHHHHHHHhhhcCCCcceeeeeccc
Confidence              2456777778887764   368887777766543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.36  E-value=0.0017  Score=58.21  Aligned_cols=100  Identities=16%  Similarity=0.121  Sum_probs=63.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCC---CChHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT---EGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~---~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+.+|||+||+|++|..+++.+...|.+|+++.++.++.+.+....  ++..+ .|..   +..+.+.+....++|+||+
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l--Ga~~v-i~~~~~~~~~~~i~~~~~~gvd~v~d  227 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL--GFDDA-FNYKEEPDLDAALKRYFPNGIDIYFD  227 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc--CCcee-EEcCCcccHHHHHHHhCCCCcEEEEE
Confidence            4789999999999999999988888999999888877655443211  12111 2222   1112333333224999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.|..              .....++.++..  ++++.++..
T Consensus       228 ~~g~~--------------~~~~~~~~l~~~--G~iv~~G~~  253 (338)
T cd08295         228 NVGGK--------------MLDAVLLNMNLH--GRIAACGMI  253 (338)
T ss_pred             CCCHH--------------HHHHHHHHhccC--cEEEEeccc
Confidence            87621              123445555544  588887754

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.35  E-value=0.0011  Score=59.80  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEE-EccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIV-KADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +++|+|.||||++|+.+++.|++. +++++.+.++.+..+.+.. ....+..+ ..++.+ .+..  .+.+ +|+||.|.
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~-~~~~~~~~~~~~~~~-~~~~--~~~~-vD~Vf~al   76 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD-VHPHLRGLVDLVLEP-LDPE--ILAG-ADVVFLAL   76 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH-hCcccccccCceeec-CCHH--HhcC-CCEEEECC
Confidence            478999999999999999999987 5788777664332221111 11112111 123333 2222  4466 99999987


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV  185 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~  185 (301)
                      ..              .....++.++.+.| .++|=.|+..-
T Consensus        77 P~--------------~~~~~~v~~a~~aG-~~VID~S~~fR  103 (343)
T PRK00436         77 PH--------------GVSMDLAPQLLEAG-VKVIDLSADFR  103 (343)
T ss_pred             Cc--------------HHHHHHHHHHHhCC-CEEEECCcccC
Confidence            42              12456677776666 47888887653

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.35  E-value=0.0018  Score=57.76  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=62.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--Ch-HhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GS-AKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~-~~~~~~~~~~~d~Vi~  141 (301)
                      .+.+|||+|++|.+|..+++.+...|.+|+++.++.++.+.+.. .+  +..+ .|..+  .. +.+.....+++|+|+.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lG--a~~v-i~~~~~~~~~~~~~~~~~~gvdvv~d  213 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LG--FDVA-FNYKTVKSLEETLKKASPDGYDCYFD  213 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC--CCEE-EeccccccHHHHHHHhCCCCeEEEEE
Confidence            47899999999999999998888889999988888766555432 22  2211 12222  01 2222222224999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +.|..              .....++.++..  +++|.++...
T Consensus       214 ~~G~~--------------~~~~~~~~l~~~--G~iv~~G~~~  240 (325)
T TIGR02825       214 NVGGE--------------FSNTVIGQMKKF--GRIAICGAIS  240 (325)
T ss_pred             CCCHH--------------HHHHHHHHhCcC--cEEEEecchh
Confidence            87631              123345555443  5898887653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.32  E-value=0.0016  Score=58.28  Aligned_cols=99  Identities=19%  Similarity=0.212  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      +++|||+||+|++|...++.+.+.|+.+++...+.++.+.+.. ..... .  .|..+  ..+.+.+...+ ++|+|+.+
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~-lGAd~-v--i~y~~~~~~~~v~~~t~g~gvDvv~D~  218 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE-LGADH-V--INYREEDFVEQVRELTGGKGVDVVLDT  218 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh-cCCCE-E--EcCCcccHHHHHHHHcCCCCceEEEEC
Confidence            7899999999999999998888889877777766666553322 22111 1  12333  12455555543 49999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      .|...              ....+++++..  ++++.++..+
T Consensus       219 vG~~~--------------~~~~l~~l~~~--G~lv~ig~~~  244 (326)
T COG0604         219 VGGDT--------------FAASLAALAPG--GRLVSIGALS  244 (326)
T ss_pred             CCHHH--------------HHHHHHHhccC--CEEEEEecCC
Confidence            76321              23345555544  6888887764

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.32  E-value=0.00047  Score=60.00  Aligned_cols=73  Identities=18%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC--CCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .++++++|+|+ |++|++++..|++.|++|++..|+.++.+++.....  ..+...  ++.+      ..+.+ .|+||+
T Consensus       115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~--~~~~------~~~~~-~DivIn  184 (270)
T TIGR00507       115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAF--SMDE------LPLHR-VDLIIN  184 (270)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEe--chhh------hcccC-ccEEEE
Confidence            35789999998 899999999999999999999998877665443211  111211  1111      12345 999999


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +.+..
T Consensus       185 atp~g  189 (270)
T TIGR00507       185 ATSAG  189 (270)
T ss_pred             CCCCC
Confidence            98753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.32  E-value=0.0041  Score=51.47  Aligned_cols=76  Identities=17%  Similarity=0.266  Sum_probs=53.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeC---Cchhhhc------------------ccc--CCCCeEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD---LDKAKTT------------------LSK--DNPSLQIVK  118 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~---~~~~~~~------------------~~~--~~~~~~~~~  118 (301)
                      .++.++|+|.|+ |++|+.+++.|+..|. ++++.+++   .+.+...                  +..  ...++..+.
T Consensus        18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            567889999998 9999999999999998 68888877   3322210                  000  123455555


Q ss_pred             ccCCCChHhHHHHhcCCCCEEEEc
Q 022216          119 ADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus       119 ~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++.  +.+.+.+++ +|+||.+
T Consensus        97 ~~i~~--~~~~~~~~~-~DlVi~a  117 (200)
T TIGR02354        97 EKITE--ENIDKFFKD-ADIVCEA  117 (200)
T ss_pred             eeCCH--hHHHHHhcC-CCEEEEC
Confidence            66653  567777888 9999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.32  E-value=0.0011  Score=61.88  Aligned_cols=78  Identities=17%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|+|+|||++| +|.++++.|++.|++|++.+++.......... ...++.+..++..   ..+.  -.+ +|.||++
T Consensus         3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~--~~~-~d~vV~s   75 (447)
T PRK02472          3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHP---LELL--DED-FDLMVKN   75 (447)
T ss_pred             cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCC---HHHh--cCc-CCEEEEC
Confidence            4589999999966 99999999999999999988765322111100 1124444433221   1111  124 8999999


Q ss_pred             cCCCCC
Q 022216          143 TGFQPG  148 (301)
Q Consensus       143 Ag~~~~  148 (301)
                      +|+...
T Consensus        76 ~gi~~~   81 (447)
T PRK02472         76 PGIPYT   81 (447)
T ss_pred             CCCCCC
Confidence            997643

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.27  E-value=0.00047  Score=63.58  Aligned_cols=108  Identities=12%  Similarity=0.083  Sum_probs=76.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC-------CC--eEEEEEeCCchhhhccccCC-------CCeEEEEccCCCChHhHH
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK-------GF--AVKAGVRDLDKAKTTLSKDN-------PSLQIVKADVTEGSAKLS  129 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~-------G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~  129 (301)
                      .-+|.|+|++|.+|.+++-.|+..       |.  ++++++++.+.++....+..       .++.+..    +    -.
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~----~----~y  171 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI----D----PY  171 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec----C----CH
Confidence            358999999999999999999987       64  78888888776554322111       1111111    1    24


Q ss_pred             HHhcCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHH-cCC-CEEEEecc
Q 022216          130 EAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRK-RGV-NRFILISS  182 (301)
Q Consensus       130 ~~~~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~-~~~-~~iV~~SS  182 (301)
                      +.+++ .|+||.+||...  ..+....++.|..-...+.+.+++ ++. ..+|.+|.
T Consensus       172 e~~kd-aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        172 EVFQD-AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             HHhCc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence            56788 999999999743  344556678899999999999988 454 45666665

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.27  E-value=0.0069  Score=47.22  Aligned_cols=99  Identities=18%  Similarity=0.263  Sum_probs=64.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhh----------------------cccc--CCCCeEEEEccCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKT----------------------TLSK--DNPSLQIVKADVT  122 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~----------------------~~~~--~~~~~~~~~~Dl~  122 (301)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.-....                      ...+  +...+..+..++.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            4899997 9999999999999997 68877655211110                      0000  1234445555554


Q ss_pred             CChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          123 EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       123 ~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +  ....+.+++ .|+||.|..             |......+.++|++.++ .+|..++..
T Consensus        80 ~--~~~~~~~~~-~diVi~~~d-------------~~~~~~~l~~~~~~~~i-~~i~~~~~g  124 (143)
T cd01483          80 E--DNLDDFLDG-VDLVIDAID-------------NIAVRRALNRACKELGI-PVIDAGGLG  124 (143)
T ss_pred             h--hhHHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEcCCC
Confidence            4  234566777 999998863             23445678888988874 577766654

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.26  E-value=0.0014  Score=59.68  Aligned_cols=76  Identities=11%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|+|.|+ |.+|..+++.|...|.+|++.+|++++.+.+......   .+..+..+ .+.+.+.+.+ .|+||++++
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~---~v~~~~~~-~~~l~~~l~~-aDvVI~a~~  239 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG---RIHTRYSN-AYEIEDAVKR-ADLLIGAVL  239 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc---eeEeccCC-HHHHHHHHcc-CCEEEEccc
Confidence            4678999988 9999999999999999999999987766544321111   12334555 6778888888 999999986


Q ss_pred             CC
Q 022216          145 FQ  146 (301)
Q Consensus       145 ~~  146 (301)
                      +.
T Consensus       240 ~~  241 (370)
T TIGR00518       240 IP  241 (370)
T ss_pred             cC
Confidence            53

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.26  E-value=0.0016  Score=58.68  Aligned_cols=99  Identities=18%  Similarity=0.208  Sum_probs=59.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEE-EeCCchhhhccccCCCCeEEE-EccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAG-VRDLDKAKTTLSKDNPSLQIV-KADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      ++|.|.||||++|..+++.|.+. +.+++.+ .++.+..+.+.. ..+.+... ..++.+  ....+...+ +|+||.|.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~-~~~~l~~~~~~~~~~--~~~~~~~~~-~DvVf~al   76 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE-VHPHLRGLVDLNLEP--IDEEEIAED-ADVVFLAL   76 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH-hCccccccCCceeec--CCHHHhhcC-CCEEEECC
Confidence            47999999999999999999987 5677744 433322111110 01111111 112221  112333356 99999988


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +..              ....++..+.+.| .++|-.|+..
T Consensus        77 P~~--------------~s~~~~~~~~~~G-~~VIDlS~~f  102 (346)
T TIGR01850        77 PHG--------------VSAELAPELLAAG-VKVIDLSADF  102 (346)
T ss_pred             Cch--------------HHHHHHHHHHhCC-CEEEeCChhh
Confidence            532              2566777777777 5888888864

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.26  E-value=0.00047  Score=57.12  Aligned_cols=71  Identities=17%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .++++|+++|+|. |.+|+++++.|.+.|++|++.+++++..++.....  +...+  |.    +.+..  .+ +|+++.
T Consensus        24 ~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~--g~~~v--~~----~~l~~--~~-~Dv~vp   91 (200)
T cd01075          24 DSLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF--GATVV--AP----EEIYS--VD-ADVFAP   91 (200)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc--CCEEE--cc----hhhcc--cc-CCEEEe
Confidence            4567999999998 79999999999999999999888876665544211  22221  11    11211  14 999998


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      ||.
T Consensus        92 ~A~   94 (200)
T cd01075          92 CAL   94 (200)
T ss_pred             ccc
Confidence            874

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=97.25  E-value=0.0032  Score=57.80  Aligned_cols=108  Identities=15%  Similarity=0.171  Sum_probs=69.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch---hhh-------------------cccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---AKT-------------------TLSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~---~~~-------------------~~~~--~~~~~~~  116 (301)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++.+.-.   +..                   .+.+  ...++..
T Consensus        38 ~~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~  116 (392)
T PRK07878         38 KRLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRL  116 (392)
T ss_pred             HHHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEE
Confidence            3567889999997 9999999999999996 67766654311   110                   0000  1223444


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~  187 (301)
                      +...++.  +...+.+++ +|+||.|..             |...-..+-++|.+.++ .+|+.+....+|
T Consensus       117 ~~~~i~~--~~~~~~~~~-~D~Vvd~~d-------------~~~~r~~ln~~~~~~~~-p~v~~~~~g~~G  170 (392)
T PRK07878        117 HEFRLDP--SNAVELFSQ-YDLILDGTD-------------NFATRYLVNDAAVLAGK-PYVWGSIYRFEG  170 (392)
T ss_pred             EeccCCh--hHHHHHHhc-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence            5555553  456677888 999998762             23334456777888774 577766655544

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.25  E-value=0.00076  Score=59.03  Aligned_cols=77  Identities=17%  Similarity=0.127  Sum_probs=53.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++++++|.|+ |+.|++++..|++.|. +|+++.|+.++.+++............  +.. .+.+...+.+ .|+|||+
T Consensus       123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~--~~~-~~~~~~~~~~-~DiVIna  197 (282)
T TIGR01809       123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITR--LEG-DSGGLAIEKA-AEVLVST  197 (282)
T ss_pred             cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCccee--ccc-hhhhhhcccC-CCEEEEC
Confidence            46889999997 9999999999999996 799999998887766532111111111  111 1234455567 9999999


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      ...
T Consensus       198 Tp~  200 (282)
T TIGR01809       198 VPA  200 (282)
T ss_pred             CCC
Confidence            754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.23  E-value=0.0012  Score=58.52  Aligned_cols=105  Identities=15%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhh----ccccC--CCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKT----TLSKD--NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~----~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      |+|.|.|+ |.+|..++..|+..|  .+|++++++.+..+.    +....  .....+..   .|     .+.+++ .|+
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d-----~~~l~~-aDi   70 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GD-----YADCKG-ADV   70 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CC-----HHHhCC-CCE
Confidence            47999998 999999999999999  589999998765442    11100  01111111   12     234788 999


Q ss_pred             EEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEec
Q 022216          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (301)
Q Consensus       139 Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~S  181 (301)
                      ||.+++....  .+....+..|..-...+++.+++.+.+ .++.++
T Consensus        71 Viita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          71 VVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999986532  233344567777778888888777643 444443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.22  E-value=0.0031  Score=55.96  Aligned_cols=96  Identities=21%  Similarity=0.217  Sum_probs=65.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+++|+|+|+ |++|...++-+...|++|++++|++++.+.... . ..-.++...  | ++...+.-+. +|++|.+++
T Consensus       166 pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~-l-GAd~~i~~~--~-~~~~~~~~~~-~d~ii~tv~  238 (339)
T COG1064         166 PGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK-L-GADHVINSS--D-SDALEAVKEI-ADAIIDTVG  238 (339)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH-h-CCcEEEEcC--C-chhhHHhHhh-CcEEEECCC
Confidence            3789999999 599998888888899999999999998765543 1 122222222  4 3444444444 999999987


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                       ...             ....+++++..  ++++.++-.
T Consensus       239 -~~~-------------~~~~l~~l~~~--G~~v~vG~~  261 (339)
T COG1064         239 -PAT-------------LEPSLKALRRG--GTLVLVGLP  261 (339)
T ss_pred             -hhh-------------HHHHHHHHhcC--CEEEEECCC
Confidence             321             24456666654  588888765

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.22  E-value=0.00058  Score=59.17  Aligned_cols=112  Identities=18%  Similarity=0.128  Sum_probs=71.9

Q ss_pred             EEEEcCCchHHHHHHHHHHHCC----CeEEEEEeCCchhhhccccCCCCeEE-EEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           69 IFVAGATGSSGKRIVEQLLAKG----FAVKAGVRDLDKAKTTLSKDNPSLQI-VKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |.|+||+|.+|..++..|+..|    .+|+++++++++++....+...-... ....++- .+...+.+++ .|+||.++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~~~~~~~-aDiVv~t~   78 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDPYEAFKD-ADVVIITA   78 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCchHHHhCC-CCEEEECC
Confidence            4799999999999999999998    68999998876654322110000000 0111111 1235677888 99999999


Q ss_pred             CCCCCC--CCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          144 GFQPGW--DLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       144 g~~~~~--~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      |.....  +.......|+.-...+++.+++.+.+ .+|.+|-
T Consensus        79 ~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN  120 (263)
T cd00650          79 GVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN  120 (263)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            865432  22334567777788888888877643 4555543

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.22  E-value=0.00055  Score=59.94  Aligned_cols=73  Identities=22%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCC---CCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDN---PSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      ..++++|+|.|+ |+.|++++..|++.|. +|++++|+.++.+.+.....   ....+..  .    +.+.+.+.+ .|+
T Consensus       124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~--~----~~~~~~~~~-aDi  195 (284)
T PRK12549        124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATA--G----SDLAAALAA-ADG  195 (284)
T ss_pred             CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEe--c----cchHhhhCC-CCE
Confidence            356789999998 9999999999999997 79999999887766543211   1122211  1    224455677 999


Q ss_pred             EEEcc
Q 022216          139 VVCAT  143 (301)
Q Consensus       139 Vi~~A  143 (301)
                      |||+.
T Consensus       196 VInaT  200 (284)
T PRK12549        196 LVHAT  200 (284)
T ss_pred             EEECC
Confidence            99994

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.22  E-value=0.0028  Score=56.73  Aligned_cols=94  Identities=22%  Similarity=0.289  Sum_probs=57.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCe---EEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFA---VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|.|+||||++|.++++.|.++++.   +..+ ++.++..+...  ..+   ...++.+ .+..  .+.+ +|+||.+
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~--~~~---~~l~~~~-~~~~--~~~~-vD~vFla   73 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVP--FAG---KNLRVRE-VDSF--DFSQ-VQLAFFA   73 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeec--cCC---cceEEee-CChH--HhcC-CCEEEEc
Confidence            478999999999999999999987653   3333 33333222111  111   2234433 1211  2567 9999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ++..              -...+++.+.+.|+ ++|=.|+..
T Consensus        74 ~p~~--------------~s~~~v~~~~~~G~-~VIDlS~~f  100 (336)
T PRK05671         74 AGAA--------------VSRSFAEKARAAGC-SVIDLSGAL  100 (336)
T ss_pred             CCHH--------------HHHHHHHHHHHCCC-eEEECchhh
Confidence            7521              13457777777775 677777764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=97.20  E-value=0.0071  Score=52.28  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=64.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhh----------------------ccccCCC--CeEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKT----------------------TLSKDNP--SLQIV  117 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~----------------------~~~~~~~--~~~~~  117 (301)
                      .+++.+|+|.|+ |++|+++++.|+..| -++++++.+.-....                      ......+  .++.+
T Consensus        27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i  105 (268)
T PRK15116         27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV  105 (268)
T ss_pred             HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence            467889999997 999999999999999 478887755311110                      0001122  33333


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ..-+ + .+.+.+.+..++|+||.+...             +..-..+.+.|++.++ .+|..+..
T Consensus       106 ~~~i-~-~e~~~~ll~~~~D~VIdaiD~-------------~~~k~~L~~~c~~~~i-p~I~~gGa  155 (268)
T PRK15116        106 DDFI-T-PDNVAEYMSAGFSYVIDAIDS-------------VRPKAALIAYCRRNKI-PLVTTGGA  155 (268)
T ss_pred             eccc-C-hhhHHHHhcCCCCEEEEcCCC-------------HHHHHHHHHHHHHcCC-CEEEECCc
Confidence            2222 2 345555554238988887642             3334568888888875 56655443

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.20  E-value=0.0036  Score=55.62  Aligned_cols=98  Identities=22%  Similarity=0.285  Sum_probs=62.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+++|+|++|.+|..+++.+.+.|.+|+++.+++++.+.+.. ... -.++  |..+..+.+.+ +.+ +|+|++|+|
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~-~~~~--~~~~~~~~~~~-~~~-~d~v~~~~g  235 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKE-LGA-DYVI--DGSKFSEDVKK-LGG-ADVVIELVG  235 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-cCC-cEEE--ecHHHHHHHHh-ccC-CCEEEECCC
Confidence            46799999999999999999999999999998887765544321 111 1112  21111222322 235 999999987


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ..              .....++.+...  +++|.++...
T Consensus       236 ~~--------------~~~~~~~~~~~~--g~~v~~g~~~  259 (332)
T cd08259         236 SP--------------TIEESLRSLNKG--GRLVLIGNVT  259 (332)
T ss_pred             hH--------------HHHHHHHHhhcC--CEEEEEcCCC
Confidence            32              123344444443  5788887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.20  E-value=0.0016  Score=52.34  Aligned_cols=57  Identities=25%  Similarity=0.345  Sum_probs=46.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      ++.+++|+|.|+++.+|..+++.|.+.|.+|+++.|+.                         +.+.+.+.+ .|+||.+
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------------------~~l~~~l~~-aDiVIsa   94 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------------------KNLKEHTKQ-ADIVIVA   94 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------------------hhHHHHHhh-CCEEEEc
Confidence            57899999999966689999999999999998887752                         235567777 8999988


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      .+.
T Consensus        95 t~~   97 (168)
T cd01080          95 VGK   97 (168)
T ss_pred             CCC
Confidence            764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=97.19  E-value=0.0051  Score=55.88  Aligned_cols=104  Identities=13%  Similarity=0.210  Sum_probs=69.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch---hhh-------------------cccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---AKT-------------------TLSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~---~~~-------------------~~~~--~~~~~~~  116 (301)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++.+.-.   +..                   .+.+  ...+++.
T Consensus        37 ~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~  115 (370)
T PRK05600         37 ERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA  115 (370)
T ss_pred             HHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence            4567889999998 9999999999999996 78887766311   110                   0000  2234555


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +...++.  +.+.+.+++ +|+||.|..             |...-..+-++|.+.++ .+|+.+..
T Consensus       116 ~~~~i~~--~~~~~~~~~-~DlVid~~D-------------n~~~r~~in~~~~~~~i-P~v~~~~~  165 (370)
T PRK05600        116 LRERLTA--ENAVELLNG-VDLVLDGSD-------------SFATKFLVADAAEITGT-PLVWGTVL  165 (370)
T ss_pred             eeeecCH--HHHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEEe
Confidence            5555543  567778888 999998863             23444556677787775 46665543

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.18  E-value=0.0032  Score=56.59  Aligned_cols=91  Identities=15%  Similarity=0.216  Sum_probs=57.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEE---EEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVK---AGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +|+|.||+|++|..+++.|.++|+.+.   .+.+..+..+.+..   .+......|+..      +.+.+ +|+||.++|
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~---~~~~~~~~~~~~------~~~~~-~D~v~~a~g   70 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF---KGKELEVNEAKI------ESFEG-IDIALFSAG   70 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee---CCeeEEEEeCCh------HHhcC-CCEEEECCC
Confidence            489999999999999999999887643   44455443332221   223444555532      23467 999999987


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ..              -+..++..+.+.|+ ++|=.|+.
T Consensus        71 ~~--------------~s~~~a~~~~~~G~-~VID~ss~   94 (339)
T TIGR01296        71 GS--------------VSKEFAPKAAKCGA-IVIDNTSA   94 (339)
T ss_pred             HH--------------HHHHHHHHHHHCCC-EEEECCHH
Confidence            32              13445666666665 56655653

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.18  E-value=0.013  Score=49.70  Aligned_cols=103  Identities=21%  Similarity=0.268  Sum_probs=64.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQIV  117 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~~  117 (301)
                      .+++.+|+|.|. |++|+++++.|+..|. ++++++.+.-....+                      +.+  +...++.+
T Consensus         8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755           8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            456789999997 9999999999999996 777776543111000                      000  12344444


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ...++.  +...+.+..++|+||.|..             |...-..+.+.|++.++ .+|...+
T Consensus        87 ~~~i~~--~~~~~l~~~~~D~VvdaiD-------------~~~~k~~L~~~c~~~~i-p~I~s~g  135 (231)
T cd00755          87 EEFLTP--DNSEDLLGGDPDFVVDAID-------------SIRAKVALIAYCRKRKI-PVISSMG  135 (231)
T ss_pred             eeecCH--hHHHHHhcCCCCEEEEcCC-------------CHHHHHHHHHHHHHhCC-CEEEEeC
Confidence            444442  4455555323899998763             23445668888988875 4555433

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.18  E-value=0.0011  Score=61.10  Aligned_cols=75  Identities=17%  Similarity=0.307  Sum_probs=57.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++++|+|.|+ |++|+.+++.|.+.|. ++++..|+.++.+.+..... ...     ... .+.+.+.+.+ .|+||+
T Consensus       178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~-~~~-----~~~-~~~l~~~l~~-aDiVI~  248 (414)
T PRK13940        178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR-NAS-----AHY-LSELPQLIKK-ADIIIA  248 (414)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc-CCe-----Eec-HHHHHHHhcc-CCEEEE
Confidence            467899999998 9999999999999995 79998999887766553221 111     222 3456777888 999999


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      |.+..
T Consensus       249 aT~a~  253 (414)
T PRK13940        249 AVNVL  253 (414)
T ss_pred             CcCCC
Confidence            98754

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.17  E-value=0.0042  Score=55.22  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=65.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+++|+|+++.+|..+++.+...|++|+++.++.++.+.+.. ..  ... ..|..+.  .+.+.+...+ ++|++++
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~  241 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE-LG--ADY-VIDYRKEDFVREVRELTGKRGVDVVVE  241 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC--CCe-EEecCChHHHHHHHHHhCCCCCcEEEE
Confidence            46799999999999999999999999999998887765544321 11  111 1344441  1333333332 4999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ++|..              .....++.+++.  ++++.+++..
T Consensus       242 ~~g~~--------------~~~~~~~~l~~~--G~~v~~~~~~  268 (342)
T cd08266         242 HVGAA--------------TWEKSLKSLARG--GRLVTCGATT  268 (342)
T ss_pred             CCcHH--------------HHHHHHHHhhcC--CEEEEEecCC
Confidence            98731              123344555543  6899998764

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.17  E-value=0.0012  Score=58.70  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=33.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~  104 (301)
                      ++|.|+| .|.+|..++..|+++|++|++.+|+++..+
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~   39 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAA   39 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHH
Confidence            5799999 599999999999999999999999876544

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.15  E-value=0.0074  Score=50.19  Aligned_cols=73  Identities=15%  Similarity=0.249  Sum_probs=54.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ..+++++|||.|| |.+|..-++.|++.|++|++++..... +.++.  ...++.++..+... .     .+.+ .+.||
T Consensus         5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~--~~~~i~~~~~~~~~-~-----dl~~-~~lVi   74 (205)
T TIGR01470         5 ANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELESELTLLA--EQGGITWLARCFDA-D-----ILEG-AFLVI   74 (205)
T ss_pred             EEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH--HcCCEEEEeCCCCH-H-----HhCC-cEEEE
Confidence            3567999999998 999999999999999999998765542 22222  23478888887764 2     2466 88888


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      -+.+
T Consensus        75 ~at~   78 (205)
T TIGR01470        75 AATD   78 (205)
T ss_pred             ECCC
Confidence            6654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=97.15  E-value=0.0068  Score=53.57  Aligned_cols=103  Identities=18%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEEEEccCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQIVKADVT  122 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~~~~Dl~  122 (301)
                      +|||.|+ |++|.++++.|+..|. ++++++.+.-....+                      +.+  ....++.+..++.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            5899997 9999999999999996 677776554221111                      000  2234556666776


Q ss_pred             CChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc
Q 022216          123 EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (301)
Q Consensus       123 ~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~  187 (301)
                      + .....+.+++ .|+||.+..             |...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        80 ~-~~~~~~f~~~-~DvVv~a~D-------------n~~ar~~in~~c~~~~i-p~I~~gt~G~~G  128 (312)
T cd01489          80 D-PDFNVEFFKQ-FDLVFNALD-------------NLAARRHVNKMCLAADV-PLIESGTTGFLG  128 (312)
T ss_pred             C-ccchHHHHhc-CCEEEECCC-------------CHHHHHHHHHHHHHCCC-CEEEEecCccee
Confidence            5 3333456677 888887652             34445567777777774 566666555433

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=97.15  E-value=0.0093  Score=50.00  Aligned_cols=105  Identities=22%  Similarity=0.298  Sum_probs=68.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch-------hh---------------hccccCCCCeEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK-------AK---------------TTLSKDNPSLQIVKA  119 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~-------~~---------------~~~~~~~~~~~~~~~  119 (301)
                      .++..+|+|.|. ||+|++++++|++.|. ++++++-+.-.       ..               +......+.+++-..
T Consensus        27 kl~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~  105 (263)
T COG1179          27 KLKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAI  105 (263)
T ss_pred             HHhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeeh
Confidence            456789999998 9999999999999996 67666544211       00               001112344444433


Q ss_pred             c-CCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccc
Q 022216          120 D-VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV  185 (301)
Q Consensus       120 D-l~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~  185 (301)
                      | .-. ++.+.+.+...+|+||.+.-             |+..-..|+..|++++.   -++||+++
T Consensus       106 ~~f~t-~en~~~~~~~~~DyvIDaiD-------------~v~~Kv~Li~~c~~~ki---~vIss~Ga  155 (263)
T COG1179         106 NDFIT-EENLEDLLSKGFDYVIDAID-------------SVRAKVALIAYCRRNKI---PVISSMGA  155 (263)
T ss_pred             HhhhC-HhHHHHHhcCCCCEEEEchh-------------hhHHHHHHHHHHHHcCC---CEEeeccc
Confidence            3 233 56777777656999998762             34555778999998764   45666654

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.13  E-value=0.01  Score=48.98  Aligned_cols=108  Identities=20%  Similarity=0.273  Sum_probs=67.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~  116 (301)
                      ..++.++|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                      +.+  +...++.
T Consensus        17 ~~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~   95 (197)
T cd01492          17 KRLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV   95 (197)
T ss_pred             HHHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence            3556889999997 6699999999999997 577776553211110                      001  1223444


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~  188 (301)
                      +...+.+   ...+.+++ +|+||.+..             |......+-++|++.++ .+|+.++..-||.
T Consensus        96 ~~~~~~~---~~~~~~~~-~dvVi~~~~-------------~~~~~~~ln~~c~~~~i-p~i~~~~~G~~G~  149 (197)
T cd01492          96 DTDDISE---KPEEFFSQ-FDVVVATEL-------------SRAELVKINELCRKLGV-KFYATGVHGLFGF  149 (197)
T ss_pred             EecCccc---cHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEecCCEEE
Confidence            4444433   23445677 888887642             23344667788888886 6788777665553

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.13  E-value=0.0026  Score=56.24  Aligned_cols=105  Identities=19%  Similarity=0.200  Sum_probs=72.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc-------C-CCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK-------D-NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~-------~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      +|.|.|+ |.+|..++-.|+..|.  ++++++.+.+..+....+       . ..++.+...|        .+.+++ .|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--------y~~~~~-aD   70 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--------YDDCAD-AD   70 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--------HHHhCC-CC
Confidence            5789998 9999999999998874  788888876544322111       1 1133333222        456788 99


Q ss_pred             EEEEccCCCC--CCC--CCCceeeehHHHHHHHHHHHHcCCCEE-EEecc
Q 022216          138 AVVCATGFQP--GWD--LFAPWKVDNFGTVNLVEACRKRGVNRF-ILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~--~~~~~~~N~~g~~~l~~a~~~~~~~~i-V~~SS  182 (301)
                      +||.+||...  ..+  ....+..|..-...+.+.+++++..-+ |.+|-
T Consensus        71 ivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN  120 (307)
T cd05290          71 IIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN  120 (307)
T ss_pred             EEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            9999999643  233  256678899999999999998875444 44444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.13  E-value=0.0021  Score=56.68  Aligned_cols=71  Identities=20%  Similarity=0.323  Sum_probs=53.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+++++|.|. |.+|+.++..|...|.+|++.+|+++..++...   .+..++     + .+.+.+.+.+ .|+||++
T Consensus       149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~---~G~~~~-----~-~~~l~~~l~~-aDiVI~t  217 (296)
T PRK08306        149 TIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARITE---MGLSPF-----H-LSELAEEVGK-IDIIFNT  217 (296)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---cCCeee-----c-HHHHHHHhCC-CCEEEEC
Confidence            356899999997 889999999999999999999998766544322   223322     1 2346677788 9999998


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      +.
T Consensus       218 ~p  219 (296)
T PRK08306        218 IP  219 (296)
T ss_pred             CC
Confidence            63

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.13  E-value=0.0009  Score=63.71  Aligned_cols=44  Identities=30%  Similarity=0.357  Sum_probs=38.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~  107 (301)
                      .+++|+++|+|+ |++|++++..|++.|++|+++.|+.++.+++.
T Consensus       376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la  419 (529)
T PLN02520        376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELA  419 (529)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            456899999999 89999999999999999999999877766654

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=97.12  E-value=0.0079  Score=50.99  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=64.6

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEEEEccCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQIVKADVT  122 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~~~~Dl~  122 (301)
                      +|||.|+ |++|.++++.|+..|. ++++++.+.-....+                      ..+  ...++..+..++.
T Consensus         1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            4889996 9999999999999996 677777653211100                      000  2234566666775


Q ss_pred             CChHhH-HHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccc
Q 022216          123 EGSAKL-SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (301)
Q Consensus       123 ~~~~~~-~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~  186 (301)
                      + .+.. .+.+++ +|+||.+..             |...-..+-+.|.+.++ .+|..++.+-+
T Consensus        80 ~-~~~~~~~f~~~-~DvVi~a~D-------------n~~aR~~ln~~c~~~~i-plI~~g~~G~~  128 (234)
T cd01484          80 P-EQDFNDTFFEQ-FHIIVNALD-------------NIIARRYVNGMLIFLIV-PLIESGTEGFK  128 (234)
T ss_pred             h-hhhchHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEcccCCc
Confidence            4 2222 345677 898888752             34445667777887774 57776665433

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.11  E-value=0.0038  Score=58.80  Aligned_cols=104  Identities=14%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-------------h--HhHH
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-------------S--AKLS  129 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-------------~--~~~~  129 (301)
                      .+.+|+|+|+ |.+|...+..+...|++|+++++++++++....   -+.+++..|..+.             .  +...
T Consensus       164 pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes---lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        164 PPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES---MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            4789999998 999999999999999999999999888776543   3444433333210             1  1112


Q ss_pred             HH----hcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          130 EA----IGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       130 ~~----~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +.    .++ +|+||.+++......+..       -+...++.+++.  +.||.++.
T Consensus       240 ~~~~~~~~g-aDVVIetag~pg~~aP~l-------it~~~v~~mkpG--gvIVdvg~  286 (509)
T PRK09424        240 ALFAEQAKE-VDIIITTALIPGKPAPKL-------ITAEMVASMKPG--SVIVDLAA  286 (509)
T ss_pred             HHHHhccCC-CCEEEECCCCCcccCcch-------HHHHHHHhcCCC--CEEEEEcc
Confidence            22    345 999999998754322210       023444444432  57888875

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.10  E-value=0.00067  Score=57.08  Aligned_cols=40  Identities=40%  Similarity=0.562  Sum_probs=35.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~  106 (301)
                      |+|.|+||+|.+|..+++.|++.|++|++..|++++.+.+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l   40 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEA   40 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHH
Confidence            5799999999999999999999999999999988776544

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.10  E-value=0.0018  Score=57.72  Aligned_cols=115  Identities=20%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +.++|.|+|| |.+|..++..|+..| .++++++++++..+....+  ...........+.. ..... .+++ .|+||.
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d~~-~l~~-ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNNYE-DIKD-SDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCCHH-HhCC-CCEEEE
Confidence            4679999997 999999999999988 6888888877543321110  00000000011110 11233 6788 999999


Q ss_pred             ccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCE-EEEeccc
Q 022216          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNR-FILISSI  183 (301)
Q Consensus       142 ~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~-iV~~SS~  183 (301)
                      ++|....  .+....+..|..-...+++.+.+.+.+- +|++|..
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP  124 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP  124 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence            9986432  3334455667776777888887776444 6666653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.08  E-value=0.0063  Score=46.31  Aligned_cols=92  Identities=20%  Similarity=0.318  Sum_probs=57.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHH-CCCeEEEE-EeCCchhh-h----ccccCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLA-KGFAVKAG-VRDLDKAK-T----TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~-~r~~~~~~-~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      ++|.|.|++|.+|+.+++.+.+ .|.++... +|+++... +    +......++.+        .+++.+.+.. +|+|
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v--------~~~l~~~~~~-~DVv   71 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV--------TDDLEELLEE-ADVV   71 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE--------BS-HHHHTTH--SEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc--------chhHHHhccc-CCEE
Confidence            4799999999999999999999 57887665 44442211 1    10000111111        2457778888 9999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      |.+.              +-.++...++.+.++++ .+|.-+|
T Consensus        72 IDfT--------------~p~~~~~~~~~~~~~g~-~~ViGTT   99 (124)
T PF01113_consen   72 IDFT--------------NPDAVYDNLEYALKHGV-PLVIGTT   99 (124)
T ss_dssp             EEES---------------HHHHHHHHHHHHHHT--EEEEE-S
T ss_pred             EEcC--------------ChHHhHHHHHHHHhCCC-CEEEECC
Confidence            9876              24557788888888875 5555444

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK07411 hypothetical protein; Validated

Probab=97.07  E-value=0.0066  Score=55.66  Aligned_cols=106  Identities=13%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~  116 (301)
                      ..++..+|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                      +.+  ...+++.
T Consensus        34 ~~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~  112 (390)
T PRK07411         34 KRLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL  112 (390)
T ss_pred             HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            4567889999998 9999999999999996 666666542111100                      000  2235566


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV  185 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~  185 (301)
                      +...++.  +...+.+.+ .|+||.|..             |...-..+-++|.+.++ .+|+.+...-
T Consensus       113 ~~~~~~~--~~~~~~~~~-~D~Vvd~~d-------------~~~~r~~ln~~~~~~~~-p~v~~~~~g~  164 (390)
T PRK07411        113 YETRLSS--ENALDILAP-YDVVVDGTD-------------NFPTRYLVNDACVLLNK-PNVYGSIFRF  164 (390)
T ss_pred             EecccCH--HhHHHHHhC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEEccC
Confidence            6666654  456677888 999998863             23333556677777764 5666544433

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.07  E-value=0.0022  Score=56.88  Aligned_cols=113  Identities=18%  Similarity=0.166  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|.|.|+ |.+|..++..++..|. +|++.+++++.......+  ...........++. .... +.+++ .|+||.+
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~d~-~~~~~-aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG-TNDY-EDIAG-SDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe-CCCH-HHHCC-CCEEEEC
Confidence            479999999 9999999999999875 899999877654332211  00000000011111 0112 35788 9999999


Q ss_pred             cCCCCCCC--CCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          143 TGFQPGWD--LFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       143 Ag~~~~~~--~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      +|.....+  ....+.-|+.-...+++.+.+...+ .+|+++.
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN  120 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN  120 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            98654222  1233346677677777777766543 4666554

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.06  E-value=0.0026  Score=57.19  Aligned_cols=77  Identities=14%  Similarity=0.107  Sum_probs=51.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--C-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--D-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~-~~d~Vi~  141 (301)
                      +++.|||.||+|++|++.++-+...|+..++..++.++.+-.+. .  + .-...|..+ ++-++...+  + ++|+|+.
T Consensus       157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~-l--G-Ad~vvdy~~-~~~~e~~kk~~~~~~DvVlD  231 (347)
T KOG1198|consen  157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKK-L--G-ADEVVDYKD-ENVVELIKKYTGKGVDVVLD  231 (347)
T ss_pred             CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHH-c--C-CcEeecCCC-HHHHHHHHhhcCCCccEEEE
Confidence            57899999999999999998888889544445666666554332 1  1 112356666 333333333  2 5999999


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      |.|-.
T Consensus       232 ~vg~~  236 (347)
T KOG1198|consen  232 CVGGS  236 (347)
T ss_pred             CCCCC
Confidence            99853

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.05  E-value=0.0012  Score=57.80  Aligned_cols=76  Identities=21%  Similarity=0.295  Sum_probs=51.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCC--CeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNP--SLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .++|+++|.|+ ||.|++++-.|++.|. +|+++.|+.++.+++......  +...+.  ..+ ...+.+.+.. .|+||
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~--~~~-~~~~~~~~~~-~divI  199 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVD-ARGIEDVIAA-ADGVV  199 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE--ecC-HhHHHHHHhh-cCEEE
Confidence            46789999998 9999999999999996 788889998877665432111  111111  112 1223334456 99999


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      |+..
T Consensus       200 NaTp  203 (283)
T PRK14027        200 NATP  203 (283)
T ss_pred             EcCC
Confidence            9864

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.02  E-value=0.0024  Score=57.27  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=61.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .+|||+||+|++|..+++.+...|+ +|+++.+++++.+.+....  ++..+ .|..+  ..+.+.+...+++|+||++.
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l--Ga~~v-i~~~~~~~~~~i~~~~~~gvd~vid~~  232 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL--GFDAA-INYKTDNVAERLRELCPEGVDVYFDNV  232 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc--CCcEE-EECCCCCHHHHHHHHCCCCceEEEECC
Confidence            7999999999999999988888898 7999888876655433211  22211 12222  12334333322499999988


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |..              .....++.++..  +++|.++..
T Consensus       233 g~~--------------~~~~~~~~l~~~--G~iv~~G~~  256 (345)
T cd08293         233 GGE--------------ISDTVISQMNEN--SHIILCGQI  256 (345)
T ss_pred             CcH--------------HHHHHHHHhccC--CEEEEEeee
Confidence            631              123344555444  588887754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.02  E-value=0.0064  Score=56.62  Aligned_cols=67  Identities=28%  Similarity=0.353  Sum_probs=47.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      |+|.|.||.|.+|..+++.|.+.|++|++.+|+++...+....  .++.     ..+   ...+.+.+ .|+||.+..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~--~gv~-----~~~---~~~e~~~~-aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE--LGVE-----YAN---DNIDAAKD-ADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH--cCCe-----ecc---CHHHHhcc-CCEEEEecC
Confidence            5799999999999999999999999999999987664333211  1221     111   23445667 898888764

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.01  E-value=0.0027  Score=55.43  Aligned_cols=57  Identities=23%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+++|+|+|.|++|.+|+.++..|+++|++|+++.|+                         ...+.+.+++ .|+||+
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~-------------------------t~~L~~~~~~-aDIvI~  208 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR-------------------------TQNLPELVKQ-ADIIVG  208 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC-------------------------chhHHHHhcc-CCEEEE
Confidence            35689999999998889999999999999999886652                         1234555677 999999


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      +.|
T Consensus       209 AtG  211 (283)
T PRK14192        209 AVG  211 (283)
T ss_pred             ccC
Confidence            987

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.00  E-value=0.0011  Score=54.27  Aligned_cols=108  Identities=23%  Similarity=0.217  Sum_probs=57.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC------------ChHhHHHHhcC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE------------GSAKLSEAIGD  134 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~------------~~~~~~~~~~~  134 (301)
                      |+|.|.|. |++|..++..|++.|++|++++.+++..+.+...   ...+.+-.+.+            ......+++.+
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g---~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~   76 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNG---ELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD   76 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTT---SSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhc---cccccccchhhhhccccccccchhhhhhhhhhhc
Confidence            68889975 9999999999999999999999998876665431   11111100000            01223444555


Q ss_pred             CCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEeccc
Q 022216          135 DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSI  183 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~  183 (301)
                       .|++|-|.+.....+.    ..|.......++...+. ..+.+|.+-|+
T Consensus        77 -adv~~I~VpTP~~~~~----~~Dls~v~~a~~~i~~~l~~~~lvV~~ST  121 (185)
T PF03721_consen   77 -ADVVFICVPTPSDEDG----SPDLSYVESAIESIAPVLRPGDLVVIEST  121 (185)
T ss_dssp             --SEEEE----EBETTT----SBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             -cceEEEecCCCccccC----CccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence             9999999875443321    23455555555555432 22456555554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.00  E-value=0.012  Score=47.70  Aligned_cols=98  Identities=22%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC---chhhh------------------cccc--CCCCeEEEEccCCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL---DKAKT------------------TLSK--DNPSLQIVKADVTE  123 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~---~~~~~------------------~~~~--~~~~~~~~~~Dl~~  123 (301)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.   +.+..                  .+.+  ...+++.+...++.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            4899997 9999999999999997 588888764   11110                  0000  22344455555543


Q ss_pred             ChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEeccc
Q 022216          124 GSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSI  183 (301)
Q Consensus       124 ~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~  183 (301)
                        +.+.+.+++ +|+||.+..             |...-..+.+.+.+. ++ .+|+.+..
T Consensus        80 --~~~~~~l~~-~DlVi~~~d-------------~~~~r~~i~~~~~~~~~i-p~i~~~~~  123 (174)
T cd01487          80 --NNLEGLFGD-CDIVVEAFD-------------NAETKAMLAESLLGNKNK-PVVCASGM  123 (174)
T ss_pred             --hhHHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHHCCC-CEEEEehh
Confidence              456677788 999988742             223334567777665 53 56655433

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=96.98  E-value=0.0041  Score=53.05  Aligned_cols=113  Identities=20%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEE---EEEeCC-chhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVK---AGVRDL-DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~---~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .+.+|.|.||+||||+.+...|... ..|.   +-+... ......+.  +-+-.......+- ++.+.+++++ .|+||
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~n-p~Vs~LaLYDi~~~~GVaaDlS--HI~T~s~V~g~~g-~~~L~~al~~-advVv  101 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKLN-PLVSELALYDIANTPGVAADLS--HINTNSSVVGFTG-ADGLENALKG-ADVVV  101 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhcC-cccceeeeeecccCCccccccc--ccCCCCceeccCC-hhHHHHHhcC-CCEEE
Confidence            4679999999999999998666543 3332   222211 11111110  1111111122222 5789999999 99999


Q ss_pred             EccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          141 CATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       141 ~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      --||+..  ....+..|++|..-...+..++.+...+ ++.++|.
T Consensus       102 IPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN  146 (345)
T KOG1494|consen  102 IPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN  146 (345)
T ss_pred             ecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence            9999754  3455677899999899999998877543 4555544

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=96.98  E-value=0.0026  Score=57.40  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=62.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCC---CChHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT---EGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~---~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+.+|||+|++|.+|..+++.+...|.+|++++++.++.+.+....  ++..+ .|..   +..+.+.+...+++|++|.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l--Ga~~v-i~~~~~~~~~~~i~~~~~~gvD~v~d  234 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL--GFDEA-FNYKEEPDLDAALKRYFPEGIDIYFD  234 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc--CCCEE-EECCCcccHHHHHHHHCCCCcEEEEE
Confidence            4789999999999999999888888999998888776655432112  22211 1222   1112333332224999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.|..              .....++.++..  ++++.++..
T Consensus       235 ~vG~~--------------~~~~~~~~l~~~--G~iv~~G~~  260 (348)
T PLN03154        235 NVGGD--------------MLDAALLNMKIH--GRIAVCGMV  260 (348)
T ss_pred             CCCHH--------------HHHHHHHHhccC--CEEEEECcc
Confidence            88621              123344444443  588887654

>PLN02602 lactate dehydrogenase

Probab=96.98  E-value=0.0019  Score=58.14  Aligned_cols=107  Identities=16%  Similarity=0.204  Sum_probs=71.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccC------CCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKD------NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      ++|.|+|+ |.+|..++-.|+..|.  ++++++++.+.+.....+.      .... -+..+ .|     .+.+++ .|+
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~~-~d-----y~~~~d-aDi  108 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILAS-TD-----YAVTAG-SDL  108 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEeC-CC-----HHHhCC-CCE
Confidence            69999996 9999999999998874  7888888776543322110      1112 12110 11     234788 999


Q ss_pred             EEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          139 VVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       139 Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      ||.+||...  ..+....+..|..-...+.+.+++.+. ..+|.+|-
T Consensus       109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            999999653  234445667788888888888888764 35666654

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.97  E-value=0.0015  Score=57.98  Aligned_cols=108  Identities=18%  Similarity=0.164  Sum_probs=71.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc----C--CCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK----D--NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~----~--~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      .++|.|+|+ |.+|..++-.|+..|.  ++++++++.+.+.....+    .  .....+...  .|    . +.+++ .|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~d----y-~~~~~-ad   73 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KD----Y-SVTAN-SK   73 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CC----H-HHhCC-CC
Confidence            468999996 9999999999998874  788888877544322111    0  011122210  12    2 23788 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      +||.+||...  ..+....++.|..-...+.+.+++.+. ..+|.+|.
T Consensus        74 ivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          74 VVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            9999999643  234445667888888888888888864 35666654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.96  E-value=0.004  Score=57.63  Aligned_cols=42  Identities=17%  Similarity=0.060  Sum_probs=37.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~  107 (301)
                      +.|+|.|.|. |++|..++..|+++|++|++.++++++.+.+.
T Consensus         2 ~~~kI~VIGl-G~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~   43 (415)
T PRK11064          2 SFETISVIGL-GYIGLPTAAAFASRQKQVIGVDINQHAVDTIN   43 (415)
T ss_pred             CccEEEEECc-chhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            3578999986 99999999999999999999999988877643

>cd05295 MDH_like Malate dehydrogenase-like

Probab=96.95  E-value=0.0007  Score=62.49  Aligned_cols=108  Identities=15%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC---C----CeEEEEEeC--Cchhhhcccc-------CCCCeEEEEccCCCChHhHH
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK---G----FAVKAGVRD--LDKAKTTLSK-------DNPSLQIVKADVTEGSAKLS  129 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~---G----~~V~~~~r~--~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~  129 (301)
                      .-+|+||||+|.||.++.-.++.=   |    ..+++++..  .+.++....+       ...++.+. .   +    -.
T Consensus       123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~---~----~~  194 (452)
T cd05295         123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-T---D----LD  194 (452)
T ss_pred             ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-E---C----CH
Confidence            458999999999999999998862   3    235555552  2322211110       11122222 1   2    25


Q ss_pred             HHhcCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC--CEEEEecc
Q 022216          130 EAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV--NRFILISS  182 (301)
Q Consensus       130 ~~~~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~--~~iV~~SS  182 (301)
                      +.|++ .|+||.+||...  ..+....++.|..-...+.++..+...  .+|+.+.|
T Consensus       195 ea~~d-aDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t  250 (452)
T cd05295         195 VAFKD-AHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR  250 (452)
T ss_pred             HHhCC-CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            67888 999999999643  334556678888888889999888765  56766665

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.94  E-value=0.0019  Score=57.54  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=71.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      +.++|.|.|+ |.+|..++..++..|. +|++++++++.......+       ......+..  -+|    . +.+++ .
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d----~-~~l~~-a   75 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNN----Y-EDIAG-S   75 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCC----H-HHhCC-C
Confidence            4579999995 9999999999999995 888888887753211100       111122221  022    2 46788 9


Q ss_pred             CEEEEccCCCCCC-------CCCCceeeehHHHHHHHHHHHHcCCC-EEEEeccc
Q 022216          137 EAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSI  183 (301)
Q Consensus       137 d~Vi~~Ag~~~~~-------~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~  183 (301)
                      |+||.++|.....       +....+..|..-...+++.+.+.+.+ .+|++|..
T Consensus        76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP  130 (321)
T PTZ00082         76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP  130 (321)
T ss_pred             CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            9999999864321       12224456777777788888777654 67776654

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.94  E-value=0.0039  Score=58.09  Aligned_cols=76  Identities=12%  Similarity=0.275  Sum_probs=53.6

Q ss_pred             cccCCeEEEEcC----------------CchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChH
Q 022216           63 SVKQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        63 ~~~~~~vlVtGa----------------tG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~  126 (301)
                      .++||+||||+|                ||-.|.++++++..+|++|+++.-.. .+.     .+.++.++..+  . .+
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~-~~~-----~p~~v~~i~V~--t-a~  323 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV-DLA-----DPQGVKVIHVE--S-AR  323 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc-CCC-----CCCCceEEEec--C-HH
Confidence            478999999976                79999999999999999999876332 211     23456666543  3 33


Q ss_pred             hHHHHhcC--CCCEEEEccCCCC
Q 022216          127 KLSEAIGD--DSEAVVCATGFQP  147 (301)
Q Consensus       127 ~~~~~~~~--~~d~Vi~~Ag~~~  147 (301)
                      +..+++..  +.|++|++|++..
T Consensus       324 eM~~av~~~~~~Di~I~aAAVaD  346 (475)
T PRK13982        324 QMLAAVEAALPADIAIFAAAVAD  346 (475)
T ss_pred             HHHHHHHhhCCCCEEEEeccccc
Confidence            33333322  4799999999753

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.93  E-value=0.036  Score=51.84  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=26.6

Q ss_pred             EEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           71 VAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        71 VtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      |+||+|++|.++++.|...|++|+...+.+.
T Consensus        43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~   73 (450)
T PRK08261         43 LVGGAGRLAEALAALLAGLGYDVVANNDGGL   73 (450)
T ss_pred             EEccCchhHHHHHHHHhhCCCeeeecCcccc
Confidence            7888899999999999999999998655433

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.88  E-value=0.0086  Score=54.10  Aligned_cols=37  Identities=30%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK  102 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~  102 (301)
                      +++|+|+||+|++|+++++.|++... +++.+.++.+.
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~   40 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERS   40 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhh
Confidence            47999999999999999999998764 88877565543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.88  E-value=0.0066  Score=48.51  Aligned_cols=65  Identities=23%  Similarity=0.311  Sum_probs=48.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +++|.+.|- |-+|+.+++.|+++|++|++.+|++++.+++..   .++.     .   .++..++..+ .|+||-+-
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~g~~-----~---~~s~~e~~~~-~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE---AGAE-----V---ADSPAEAAEQ-ADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH---TTEE-----E---ESSHHHHHHH-BSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH---hhhh-----h---hhhhhhHhhc-ccceEeec
Confidence            478999997 999999999999999999999999888877654   1211     1   2345566667 89999875

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.86  E-value=0.0057  Score=50.75  Aligned_cols=73  Identities=18%  Similarity=0.275  Sum_probs=50.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .++++++|||.|| |-+|...++.|++.|++|+++.+.... +.++.  ....+.+..-++..      ..+.+ .|+||
T Consensus         6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~--~~~~i~~~~~~~~~------~~l~~-adlVi   75 (202)
T PRK06718          6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTENLVKLV--EEGKIRWKQKEFEP------SDIVD-AFLVI   75 (202)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHH--hCCCEEEEecCCCh------hhcCC-ceEEE
Confidence            4568999999998 999999999999999999998765432 23332  12345554433332      23456 88888


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      -+.+
T Consensus        76 aaT~   79 (202)
T PRK06718         76 AATN   79 (202)
T ss_pred             EcCC
Confidence            7653

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.85  E-value=0.0046  Score=54.24  Aligned_cols=79  Identities=22%  Similarity=0.287  Sum_probs=51.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCc---hhhhccccCCC--CeEEEEccCCCChHhHHHHhcCCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD---KAKTTLSKDNP--SLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~---~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      +.++++++|.|+ ||.+++++-.|+..|. +|+++.|+.+   +.+++......  .......++.+ .+.+.+.+.+ .
T Consensus       121 ~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-a  197 (288)
T PRK12749        121 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-QQAFAEALAS-A  197 (288)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhh-hhhhhhhccc-C
Confidence            457899999997 8889999999999996 8999999854   44444321111  11111122222 2335556667 9


Q ss_pred             CEEEEccC
Q 022216          137 EAVVCATG  144 (301)
Q Consensus       137 d~Vi~~Ag  144 (301)
                      |+|||+..
T Consensus       198 DivINaTp  205 (288)
T PRK12749        198 DILTNGTK  205 (288)
T ss_pred             CEEEECCC
Confidence            99999864

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.85  E-value=0.0044  Score=55.10  Aligned_cols=100  Identities=19%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+|||+||+|.+|..+++.+...|.+|+++.+++++.+.+.. .  ++..+ .|..++  .+.+.+...+++|+|+++
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~--Ga~~v-i~~~~~~~~~~v~~~~~~gvd~vld~  218 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-L--GFDAV-FNYKTVSLEEALKEAAPDGIDCYFDN  218 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--CCCEE-EeCCCccHHHHHHHHCCCCcEEEEEC
Confidence            47899999999999999999888899999988888776555432 2  22211 233221  133333322249999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      .|..              .....++.++..  +++|.++...
T Consensus       219 ~g~~--------------~~~~~~~~l~~~--G~iv~~g~~~  244 (329)
T cd08294         219 VGGE--------------FSSTVLSHMNDF--GRVAVCGSIS  244 (329)
T ss_pred             CCHH--------------HHHHHHHhhccC--CEEEEEcchh
Confidence            7621              123344444443  5888887653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK14851 hypothetical protein; Provisional

Probab=96.85  E-value=0.012  Score=57.52  Aligned_cols=104  Identities=13%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC---chhhh-------------------ccc--cCCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL---DKAKT-------------------TLS--KDNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~---~~~~~-------------------~~~--~~~~~~~~  116 (301)
                      ..+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.   +.+..                   ...  ....+++.
T Consensus        39 ~kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~  117 (679)
T PRK14851         39 ERLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITP  117 (679)
T ss_pred             HHHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEE
Confidence            3567899999996 9999999999999997 666665442   11110                   000  02346677


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEec
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~S  181 (301)
                      +...+++  +.+.+.+.+ +|+||.+.-..           .+..-..+.+.|++.++ .+|+.+
T Consensus       118 ~~~~i~~--~n~~~~l~~-~DvVid~~D~~-----------~~~~r~~l~~~c~~~~i-P~i~~g  167 (679)
T PRK14851        118 FPAGINA--DNMDAFLDG-VDVVLDGLDFF-----------QFEIRRTLFNMAREKGI-PVITAG  167 (679)
T ss_pred             EecCCCh--HHHHHHHhC-CCEEEECCCCC-----------cHHHHHHHHHHHHHCCC-CEEEee
Confidence            7777764  567788888 99999776210           12223457778888775 455544

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.84  E-value=0.0041  Score=54.96  Aligned_cols=105  Identities=21%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             EEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCC------CCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           69 IFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDN------PSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      |.|.|+ |++|..++-.|+..|  .++++++++.+.......+..      ....+..   ++   . .+.+.+ .|+||
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~---~~---~-~~~l~~-aDiVI   71 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR---GG---D-YADAAD-ADIVV   71 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE---CC---C-HHHhCC-CCEEE
Confidence            468887 899999999999998  689999988776543322110      1111111   12   1 347788 99999


Q ss_pred             EccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          141 CATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       141 ~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      .+||...  ..+....+..|+.-...+++.+++.+.+ .+|.+|.
T Consensus        72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            9999654  2344555677888888888888887643 5555554

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.84  E-value=0.0021  Score=55.93  Aligned_cols=105  Identities=18%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEE-ccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVK-ADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .++++++|.|| ||.+++++..|++.|. +|+++.|+.++.+++..........+. .++.+ .+...    + .|+|||
T Consensus       124 ~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~-~~~~~----~-~dliIN  196 (283)
T COG0169         124 VTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALAD-LEGLE----E-ADLLIN  196 (283)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccc-ccccc----c-cCEEEE
Confidence            35799999998 9999999999999995 899999999887776532221111111 22222 11111    5 899999


Q ss_pred             ccCC--CCCC-C----------CCCceeeehHH-HHHHHHHHHHcCCC
Q 022216          142 ATGF--QPGW-D----------LFAPWKVDNFG-TVNLVEACRKRGVN  175 (301)
Q Consensus       142 ~Ag~--~~~~-~----------~~~~~~~N~~g-~~~l~~a~~~~~~~  175 (301)
                      +...  .... +          ..-.+|++..- ---+++.|++.|++
T Consensus       197 aTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~  244 (283)
T COG0169         197 ATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQGAK  244 (283)
T ss_pred             CCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence            8643  2211 1          11234666553 34588888888864

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.84  E-value=0.007  Score=52.79  Aligned_cols=102  Identities=11%  Similarity=0.106  Sum_probs=67.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .|+++-|+|+.| +|.--++-..+.|++|+++++...+.++...  ..+.+.+..-..| ++.+.++.+. .|.++|++-
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~--~LGAd~fv~~~~d-~d~~~~~~~~-~dg~~~~v~  255 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIK--SLGADVFVDSTED-PDIMKAIMKT-TDGGIDTVS  255 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHH--hcCcceeEEecCC-HHHHHHHHHh-hcCcceeee
Confidence            589999999966 9986666666669999999998866665542  2344444433335 6777777766 777777664


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      .....           ....+++.++..  +++|+++-..
T Consensus       256 ~~a~~-----------~~~~~~~~lk~~--Gt~V~vg~p~  282 (360)
T KOG0023|consen  256 NLAEH-----------ALEPLLGLLKVN--GTLVLVGLPE  282 (360)
T ss_pred             ecccc-----------chHHHHHHhhcC--CEEEEEeCcC
Confidence            21111           123456666665  5899988764

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.84  E-value=0.013  Score=42.98  Aligned_cols=91  Identities=20%  Similarity=0.304  Sum_probs=58.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +++++++|||+|+ |.+|..=++.|++.|++|+++.......+       ..+.+..-++       .+.+.+ .+.||-
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~~~~~-------~~i~~~~~~~-------~~~l~~-~~lV~~   66 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEIEFSE-------GLIQLIRREF-------EEDLDG-ADLVFA   66 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSEHHHH-------TSCEEEESS--------GGGCTT-ESEEEE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCchhhhh-------hHHHHHhhhH-------HHHHhh-heEEEe
Confidence            3567999999998 99999999999999999999887751111       3344443322       233566 888885


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.+-             -.-...+.+.|++.+  .+|++...
T Consensus        67 at~d-------------~~~n~~i~~~a~~~~--i~vn~~D~   93 (103)
T PF13241_consen   67 ATDD-------------PELNEAIYADARARG--ILVNVVDD   93 (103)
T ss_dssp             -SS--------------HHHHHHHHHHHHHTT--SEEEETT-
T ss_pred             cCCC-------------HHHHHHHHHHHhhCC--EEEEECCC
Confidence            5431             122355777777765  57887664

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.83  E-value=0.0036  Score=58.11  Aligned_cols=73  Identities=26%  Similarity=0.443  Sum_probs=54.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +.+++|+|.|+ |.+|..+++.|...|. +|++..|++++...+....+  .     +..+ .+.+.+.+.+ .|+||.+
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g--~-----~~~~-~~~~~~~l~~-aDvVI~a  249 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG--G-----EAIP-LDELPEALAE-ADIVISS  249 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--C-----cEee-HHHHHHHhcc-CCEEEEC
Confidence            57899999997 9999999999999997 78888998877655443222  1     1222 2445667778 9999999


Q ss_pred             cCCC
Q 022216          143 TGFQ  146 (301)
Q Consensus       143 Ag~~  146 (301)
                      .+..
T Consensus       250 T~s~  253 (423)
T PRK00045        250 TGAP  253 (423)
T ss_pred             CCCC
Confidence            7643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.83  E-value=0.0093  Score=57.91  Aligned_cols=90  Identities=21%  Similarity=0.277  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      ..+|+|.|. |-+|+.+++.|.++|+++++++.+++..++...   .+..++.+|.+| ++.++++ +.+ .|.||-+..
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~---~g~~v~~GDat~-~~~L~~agi~~-A~~vv~~~~  473 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRK---YGYKVYYGDATQ-LELLRAAGAEK-AEAIVITCN  473 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh---CCCeEEEeeCCC-HHHHHhcCCcc-CCEEEEEeC
Confidence            357999996 999999999999999999999999888776543   578899999999 6767665 334 888887653


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCC
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      -             -.....+++.+++...
T Consensus       474 d-------------~~~n~~i~~~~r~~~p  490 (601)
T PRK03659        474 E-------------PEDTMKIVELCQQHFP  490 (601)
T ss_pred             C-------------HHHHHHHHHHHHHHCC
Confidence            1             1224557777777643

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.81  E-value=0.0088  Score=57.61  Aligned_cols=72  Identities=15%  Similarity=0.175  Sum_probs=58.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .+++|.|. |-+|+++++.|.++|++|++++.++++.++...   .+...+.+|.+| ++.++++--++.|.|+-+.
T Consensus       418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~---~g~~~i~GD~~~-~~~L~~a~i~~a~~viv~~  489 (558)
T PRK10669        418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE---RGIRAVLGNAAN-EEIMQLAHLDCARWLLLTI  489 (558)
T ss_pred             CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---CCCeEEEcCCCC-HHHHHhcCccccCEEEEEc
Confidence            47899997 999999999999999999999999887766643   578999999999 6666654322388887654

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.81  E-value=0.021  Score=51.44  Aligned_cols=94  Identities=13%  Similarity=0.193  Sum_probs=55.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC---eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .++|.|.||||++|.++++.|.++++   ++..+....+. .+....  .+......++.      .+.+.+ +|+||.+
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa-Gk~~~~--~~~~~~v~~~~------~~~~~~-~D~vf~a   76 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA-GKKVTF--EGRDYTVEELT------EDSFDG-VDIALFS   76 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC-CCeeee--cCceeEEEeCC------HHHHcC-CCEEEEC
Confidence            57899999999999999999999776   34444322111 111110  11222222332      123467 9999988


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ++..              .+..+...+.+.|+ ++|=.|+..
T Consensus        77 ~p~~--------------~s~~~~~~~~~~g~-~VIDlS~~f  103 (344)
T PLN02383         77 AGGS--------------ISKKFGPIAVDKGA-VVVDNSSAF  103 (344)
T ss_pred             CCcH--------------HHHHHHHHHHhCCC-EEEECCchh
Confidence            8532              13445555555554 677777654

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=96.81  E-value=0.005  Score=54.19  Aligned_cols=76  Identities=14%  Similarity=0.192  Sum_probs=52.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      ++++++|+|++|.+|..+++.+.+.|.+|+++.++.++.+.+.. .  ++..+ .|..+.  .+.+.+...+ ++|.+++
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--g~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~  219 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQ-A--GADAV-FNYRAEDLADRILAATAGQGVDVIIE  219 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--CCCEE-EeCCCcCHHHHHHHHcCCCceEEEEE
Confidence            57899999999999999999999999999999887766554422 1  22211 233331  1334343332 5999999


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      +++
T Consensus       220 ~~~  222 (325)
T cd08253         220 VLA  222 (325)
T ss_pred             CCc
Confidence            986

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.81  E-value=0.0059  Score=54.05  Aligned_cols=113  Identities=16%  Similarity=0.068  Sum_probs=69.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccc-cCCCC-eEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLS-KDNPS-LQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~-~~~~~-~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      ++|.|.|+ |.+|..++..|+..|. +|+++++..+....... ..... .......++- ..+..+ +.+ .|+||.++
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~~-~~~-aDiVIita   77 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNNYAD-TAN-SDIVVITA   77 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCCHHH-hCC-CCEEEEcC
Confidence            57999997 9999999999999886 89988886553321110 00000 0000111210 112333 677 99999999


Q ss_pred             CCCCCC--CCCCceeeehHHHHHHHHHHHHcCC-CEEEEeccc
Q 022216          144 GFQPGW--DLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSI  183 (301)
Q Consensus       144 g~~~~~--~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~  183 (301)
                      |.....  +....+..|..-...+++.+.+.+. ..+|.+|..
T Consensus        78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP  120 (305)
T TIGR01763        78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP  120 (305)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            965432  2223456788888888888877653 356666653

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN00203 glutamyl-tRNA reductase

Probab=96.80  E-value=0.0036  Score=59.21  Aligned_cols=75  Identities=19%  Similarity=0.301  Sum_probs=55.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +.+++|+|.|+ |.+|..+++.|...|. +|++..|+.++...+..... +......+    .+.+.+.+.+ .|+||.+
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~-g~~i~~~~----~~dl~~al~~-aDVVIsA  336 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP-DVEIIYKP----LDEMLACAAE-ADVVFTS  336 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC-CCceEeec----HhhHHHHHhc-CCEEEEc
Confidence            67899999998 9999999999999996 79999999888776653221 22211112    2345667778 9999998


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      .+.
T Consensus       337 T~s  339 (519)
T PLN00203        337 TSS  339 (519)
T ss_pred             cCC
Confidence            753

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.77  E-value=0.0034  Score=49.67  Aligned_cols=71  Identities=28%  Similarity=0.368  Sum_probs=47.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.+|+++|+|- |.+|+.+|+.|...|.+|++..++|-..-+...   .+....         .+.+++.. .|++|.
T Consensus        19 ~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~---dGf~v~---------~~~~a~~~-adi~vt   84 (162)
T PF00670_consen   19 LMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQAAM---DGFEVM---------TLEEALRD-ADIFVT   84 (162)
T ss_dssp             S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH---TT-EEE----------HHHHTTT--SEEEE
T ss_pred             eeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHHhhh---cCcEec---------CHHHHHhh-CCEEEE
Confidence            4567999999997 999999999999999999999988866544332   333322         25567778 999998


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +.|..
T Consensus        85 aTG~~   89 (162)
T PF00670_consen   85 ATGNK   89 (162)
T ss_dssp             -SSSS
T ss_pred             CCCCc
Confidence            87743

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.76  E-value=0.0098  Score=53.50  Aligned_cols=110  Identities=24%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC----CCeE-EEEccCCC----ChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN----PSLQ-IVKADVTE----GSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~-~~~~Dl~~----~~~~~~~~~~~~~d  137 (301)
                      |+|-|.| +|++|...+-.|++.||+|++++.++++.+.+.....    ++++ +++-+..+    ......+++.+ .|
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~-ad   78 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD-AD   78 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc-CC
Confidence            6788998 5999999999999999999999999988776543211    1110 00000000    01345667778 99


Q ss_pred             EEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      ++|-+.|....++-    ..++......++...+.-. .++|.+=|
T Consensus        79 v~fIavgTP~~~dg----~aDl~~V~ava~~i~~~~~~~~vvV~KS  120 (414)
T COG1004          79 VVFIAVGTPPDEDG----SADLSYVEAVAKDIGEILDGKAVVVIKS  120 (414)
T ss_pred             EEEEEcCCCCCCCC----CccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence            99999987654321    2244445555555544322 25544444

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.75  E-value=0.0045  Score=55.00  Aligned_cols=73  Identities=27%  Similarity=0.409  Sum_probs=54.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +.+++|+|.|+ |.+|..+++.|.+.| .+|++..|++++..++....+.  .     ..+ .+.+.+.+.+ .|+||.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--~-----~~~-~~~~~~~l~~-aDvVi~a  245 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--N-----AVP-LDELLELLNE-ADVVISA  245 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--e-----EEe-HHHHHHHHhc-CCEEEEC
Confidence            46899999997 999999999999876 5788889988776655432221  2     222 2346667778 9999999


Q ss_pred             cCCC
Q 022216          143 TGFQ  146 (301)
Q Consensus       143 Ag~~  146 (301)
                      .+..
T Consensus       246 t~~~  249 (311)
T cd05213         246 TGAP  249 (311)
T ss_pred             CCCC
Confidence            8743

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.74  E-value=0.0036  Score=50.88  Aligned_cols=70  Identities=17%  Similarity=0.211  Sum_probs=49.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.+++|.|.|. |.||+++++.|..-|.+|++.+|..........   ..+     .    ..++.+.+.+ .|+|+.
T Consensus        32 ~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~---~~~-----~----~~~l~ell~~-aDiv~~   97 (178)
T PF02826_consen   32 RELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE---FGV-----E----YVSLDELLAQ-ADIVSL   97 (178)
T ss_dssp             S-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH---TTE-----E----ESSHHHHHHH--SEEEE
T ss_pred             cccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhhccc---ccc-----e----eeehhhhcch-hhhhhh
Confidence            4567999999996 999999999999999999999998765431110   111     1    2346777888 999988


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      +...
T Consensus        98 ~~pl  101 (178)
T PF02826_consen   98 HLPL  101 (178)
T ss_dssp             -SSS
T ss_pred             hhcc
Confidence            7653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.74  E-value=0.0085  Score=47.59  Aligned_cols=70  Identities=19%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .++++++|+|.|| |-+|...++.|++.|++|+++.  ++..+++..  ...+.+....+..  +    -+.+ .|+||-
T Consensus         9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~--l~~i~~~~~~~~~--~----dl~~-a~lVia   76 (157)
T PRK06719          9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS--PEICKEMKE--LPYITWKQKTFSN--D----DIKD-AHLIYA   76 (157)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc--CccCHHHHh--ccCcEEEecccCh--h----cCCC-ceEEEE
Confidence            4678999999998 9999999999999999999874  333333321  1234443333332  1    2455 788876


Q ss_pred             cc
Q 022216          142 AT  143 (301)
Q Consensus       142 ~A  143 (301)
                      +.
T Consensus        77 aT   78 (157)
T PRK06719         77 AT   78 (157)
T ss_pred             CC
Confidence            54

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.73  E-value=0.0043  Score=56.60  Aligned_cols=74  Identities=30%  Similarity=0.462  Sum_probs=59.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +++++++||.|+ |-+|.-+++.|++.| .+|+++.|+.++..++....+       +++.. -+.+.+.+.+ .|+||.
T Consensus       175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-------~~~~~-l~el~~~l~~-~DvVis  244 (414)
T COG0373         175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-------AEAVA-LEELLEALAE-ADVVIS  244 (414)
T ss_pred             ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-------Ceeec-HHHHHHhhhh-CCEEEE
Confidence            378999999998 999999999999999 689999999998887664222       33333 4668888888 999999


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +.|..
T Consensus       245 sTsa~  249 (414)
T COG0373         245 STSAP  249 (414)
T ss_pred             ecCCC
Confidence            87644

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.72  E-value=0.012  Score=50.28  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=61.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|||+|+++ +|..+++.+...|.+|+++.+++++.+.+.. .. .-.+  .|..+.  .+.+. ...+ ++|++|+
T Consensus       134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g-~~~~--~~~~~~~~~~~~~-~~~~~~~d~vi~  207 (271)
T cd05188         134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKE-LG-ADHV--IDYKEEDLEEELR-LTGGGGADVVID  207 (271)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-hC-Ccee--ccCCcCCHHHHHH-HhcCCCCCEEEE
Confidence            578999999988 9999999999999999998887665443321 11 1111  232221  12222 1221 5999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +++..             .....+++.++..  ++++.++...
T Consensus       208 ~~~~~-------------~~~~~~~~~l~~~--G~~v~~~~~~  235 (271)
T cd05188         208 AVGGP-------------ETLAQALRLLRPG--GRIVVVGGTS  235 (271)
T ss_pred             CCCCH-------------HHHHHHHHhcccC--CEEEEEccCC
Confidence            98632             1234445555443  5888887764

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.72  E-value=0.015  Score=50.39  Aligned_cols=105  Identities=17%  Similarity=0.107  Sum_probs=69.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCC-CeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .|.+|+|+||+|.+|+-+.+-..-+|++|+.+.-.+++..-+....+. .+.=++.+  |..+.+.+++.+.+|+.|-|.
T Consensus       150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~--d~~~~L~~a~P~GIDvyfeNV  227 (340)
T COG2130         150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAE--DFAQALKEACPKGIDVYFENV  227 (340)
T ss_pred             CCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcc--cHHHHHHHHCCCCeEEEEEcC
Confidence            489999999999999976665555699999998888776655432211 11111111  223556666554699999998


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHc-C-CCEEEEeccccccccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKR-G-VNRFILISSILVNGAA  189 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~-~~~iV~~SS~~~~~~~  189 (301)
                      |-.                  +++++... + ..||+..+-++.|...
T Consensus       228 Gg~------------------v~DAv~~~ln~~aRi~~CG~IS~YN~~  257 (340)
T COG2130         228 GGE------------------VLDAVLPLLNLFARIPVCGAISQYNAP  257 (340)
T ss_pred             Cch------------------HHHHHHHhhccccceeeeeehhhcCCC
Confidence            742                  34444221 1 3699999999988765

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.72  E-value=0.018  Score=49.67  Aligned_cols=66  Identities=24%  Similarity=0.317  Sum_probs=43.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEEE-eCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGV-RDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++|.|+|++|.+|+.+++.+.+. +.+++.+. ++++.....          -..++.. .+++.+.+.+ +|+||.++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----------~~~~i~~-~~dl~~ll~~-~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----------GALGVAI-TDDLEAVLAD-ADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----------CCCCccc-cCCHHHhccC-CCEEEECCC
Confidence            68999999999999999998875 67877754 444332211          1112222 2345566667 999998873

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=96.71  E-value=0.0054  Score=53.88  Aligned_cols=77  Identities=14%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi~  141 (301)
                      ++.+++|+|++|.+|..+++.+...|++|+++.++.++.+.+.. ..  +.. ..|..+  ..+.+.+...+ ++|.+|+
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~g--~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~  214 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRA-LG--ADV-AINYRTEDFAEEVKEATGGRGVDVILD  214 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-cC--CCE-EEeCCchhHHHHHHHHhCCCCeEEEEE
Confidence            46899999999999999999999999999998887665544321 11  111 122222  12334444432 4999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      ++|.
T Consensus       215 ~~g~  218 (323)
T cd05276         215 MVGG  218 (323)
T ss_pred             CCch
Confidence            9873

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.71  E-value=0.0075  Score=52.49  Aligned_cols=58  Identities=21%  Similarity=0.283  Sum_probs=48.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .++||+|+|+|.++.+|+.++..|.++|++|+++.++.                         ..+.+.+++ .|+||.+
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------------------~~l~~~~~~-ADIVIsA  208 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------------------KDMASYLKD-ADVIVSA  208 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------------------hhHHHHHhh-CCEEEEC
Confidence            57899999999999999999999999999999876531                         135566777 9999998


Q ss_pred             cCCC
Q 022216          143 TGFQ  146 (301)
Q Consensus       143 Ag~~  146 (301)
                      .|..
T Consensus       209 vg~p  212 (286)
T PRK14175        209 VGKP  212 (286)
T ss_pred             CCCC
Confidence            8754

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=96.70  E-value=0.017  Score=51.22  Aligned_cols=98  Identities=19%  Similarity=0.134  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +.+|+|.|++|.+|..+++.+.+.|.+|+++.+++++.+.... .  ++..+ .|..+. .+.+.+.-+.++|+|+++.|
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~--g~~~v-~~~~~~~~~~~~~~~~~~~d~vld~~g  222 (326)
T cd08289         147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK-L--GAKEV-IPREELQEESIKPLEKQRWAGAVDPVG  222 (326)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH-c--CCCEE-EcchhHHHHHHHhhccCCcCEEEECCc
Confidence            5799999999999999999999999999999888776654432 2  22211 122220 22233332124899999876


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ..              .....++.++..  +++|.++..
T Consensus       223 ~~--------------~~~~~~~~l~~~--G~~i~~g~~  245 (326)
T cd08289         223 GK--------------TLAYLLSTLQYG--GSVAVSGLT  245 (326)
T ss_pred             HH--------------HHHHHHHHhhcC--CEEEEEeec
Confidence            21              123345555444  588888764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.70  E-value=0.0053  Score=56.82  Aligned_cols=74  Identities=27%  Similarity=0.406  Sum_probs=54.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+.+++|+|.|+ |.+|..+++.|.+.| .+|++..|+.++..++....+.  ..+     + .+.+.+.+.+ .|+||.
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~--~~i-----~-~~~l~~~l~~-aDvVi~  246 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG--EAV-----K-FEDLEEYLAE-ADIVIS  246 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC--eEe-----e-HHHHHHHHhh-CCEEEE
Confidence            367899999997 999999999999999 7899999988776544421111  122     1 2356677778 999999


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +.+..
T Consensus       247 aT~s~  251 (417)
T TIGR01035       247 STGAP  251 (417)
T ss_pred             CCCCC
Confidence            97643

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06849 hypothetical protein; Provisional

Probab=96.69  E-value=0.0058  Score=56.05  Aligned_cols=79  Identities=8%  Similarity=0.066  Sum_probs=50.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCCh---HhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS---AKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~~~-~~d~Vi  140 (301)
                      ++|+|||||++..+|..+++.|.++|++|++++..+........ .-.....+...-.|++   +.+.+.++. ++|+||
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~-~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vI   81 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSR-AVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLI   81 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-hhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            36899999999999999999999999999999877644322111 1122222211112211   444444444 699999


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      -+..
T Consensus        82 P~~e   85 (389)
T PRK06849         82 PTCE   85 (389)
T ss_pred             ECCh
Confidence            7654

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.69  E-value=0.023  Score=51.50  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+++|+|.|+ |.||..+++.+...|.+|++++.+.++..+...+.  ++..+ .|..+ .+.+.+...+ +|+||.+.|
T Consensus       183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~--Ga~~v-i~~~~-~~~~~~~~~~-~D~vid~~g  256 (360)
T PLN02586        183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL--GADSF-LVSTD-PEKMKAAIGT-MDYIIDTVS  256 (360)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC--CCcEE-EcCCC-HHHHHhhcCC-CCEEEECCC
Confidence            4789999775 99999999988888999988777665543332112  22222 13333 3445555556 999999887


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ..             ......++.++..  +++|.++.
T Consensus       257 ~~-------------~~~~~~~~~l~~~--G~iv~vG~  279 (360)
T PLN02586        257 AV-------------HALGPLLGLLKVN--GKLITLGL  279 (360)
T ss_pred             CH-------------HHHHHHHHHhcCC--cEEEEeCC
Confidence            31             1123345555443  58888764

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.69  E-value=0.0025  Score=57.96  Aligned_cols=108  Identities=10%  Similarity=0.058  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-e----EEE--E--EeCCchhhhccccC-------CCCeEEEEccCCCChHhHH
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-A----VKA--G--VRDLDKAKTTLSKD-------NPSLQIVKADVTEGSAKLS  129 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~----V~~--~--~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~  129 (301)
                      .-+|.|+|++|.+|.+++-.|+..|. .    |.+  +  +++.+.++....+.       ..++.+..    +    -.
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~----~----~y  115 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI----D----PY  115 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec----C----CH
Confidence            46999999999999999999998873 2    333  2  55555543322110       01111111    1    24


Q ss_pred             HHhcCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcC-C-CEEEEecc
Q 022216          130 EAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG-V-NRFILISS  182 (301)
Q Consensus       130 ~~~~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~-~-~~iV~~SS  182 (301)
                      +.+++ .|+||.+||...  .++....++.|..-...+.+.++++. . .++|.+|.
T Consensus       116 ~~~kd-aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN  171 (387)
T TIGR01757       116 EVFED-ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN  171 (387)
T ss_pred             HHhCC-CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            56788 999999999653  33455667889998999999998843 3 35666665

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.68  E-value=0.0023  Score=60.23  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=50.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++++++|+|+ |++|++++..|++.|++|++..|+.++.+++.....  ...  .++.+    +. .+.+ .|+||+|
T Consensus       329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~--~~~--~~~~~----~~-~l~~-~DiVIna  397 (477)
T PRK09310        329 PLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ--GKA--FPLES----LP-ELHR-IDIIINC  397 (477)
T ss_pred             CcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cce--echhH----hc-ccCC-CCEEEEc
Confidence            456899999996 899999999999999999988888776655432111  111  11222    11 2456 9999999


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      ...
T Consensus       398 tP~  400 (477)
T PRK09310        398 LPP  400 (477)
T ss_pred             CCC
Confidence            753

>PRK14852 hypothetical protein; Provisional

Probab=96.66  E-value=0.02  Score=57.56  Aligned_cols=107  Identities=13%  Similarity=0.109  Sum_probs=68.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch---hhh-------------------cccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---AKT-------------------TLSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~---~~~-------------------~~~~--~~~~~~~  116 (301)
                      ..++..+|+|.|. ||+|..+++.|+..|. ++++++.+.-.   +..                   ...+  ...+++.
T Consensus       328 ~kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~  406 (989)
T PRK14852        328 RRLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRS  406 (989)
T ss_pred             HHHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEE
Confidence            3567899999996 9999999999999996 66666544211   110                   0001  2335566


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +...++  .+.+.+.+++ +|+||.+.-..           ....-..+.+.|.+.++ .+|+.++..
T Consensus       407 ~~~~I~--~en~~~fl~~-~DiVVDa~D~~-----------~~~~rr~l~~~c~~~~I-P~I~ag~~G  459 (989)
T PRK14852        407 FPEGVA--AETIDAFLKD-VDLLVDGIDFF-----------ALDIRRRLFNRALELGI-PVITAGPLG  459 (989)
T ss_pred             EecCCC--HHHHHHHhhC-CCEEEECCCCc-----------cHHHHHHHHHHHHHcCC-CEEEeeccc
Confidence            666664  3677888888 99999776211           12223566777887775 566665543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.66  E-value=0.018  Score=52.06  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=61.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi  140 (301)
                      .+.+|||.|+ |.+|..+++.+...|.+ |+++++++++.+.... .  +... ..|..+  ..+.+.+...+ ++|+||
T Consensus       176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~--Ga~~-~i~~~~~~~~~~i~~~~~~~g~d~vi  250 (358)
T TIGR03451       176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-F--GATH-TVNSSGTDPVEAIRALTGGFGADVVI  250 (358)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--CCce-EEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence            4789999985 99999999988888985 8888887776554432 2  2221 123332  12344444443 499999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      .+.|..             ......++.++..  +++|.++..
T Consensus       251 d~~g~~-------------~~~~~~~~~~~~~--G~iv~~G~~  278 (358)
T TIGR03451       251 DAVGRP-------------ETYKQAFYARDLA--GTVVLVGVP  278 (358)
T ss_pred             ECCCCH-------------HHHHHHHHHhccC--CEEEEECCC
Confidence            998731             1123334444443  589888764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.66  E-value=0.018  Score=51.71  Aligned_cols=96  Identities=14%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi~  141 (301)
                      .+++|+|+|+ |.+|...++.+...|. +|+++++++++.+.... .  +...+ .|..+ . ++.+....  ++|+||.
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-l--Ga~~v-i~~~~-~-~~~~~~~~~g~~D~vid  241 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-M--GADKL-VNPQN-D-DLDHYKAEKGYFDVSFE  241 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-c--CCcEE-ecCCc-c-cHHHHhccCCCCCEEEE
Confidence            5789999996 9999999988888898 68888888777654432 2  22221 23333 1 12222211  3899999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ++|..             ......+++++..  +++|.++.
T Consensus       242 ~~G~~-------------~~~~~~~~~l~~~--G~iv~~G~  267 (343)
T PRK09880        242 VSGHP-------------SSINTCLEVTRAK--GVMVQVGM  267 (343)
T ss_pred             CCCCH-------------HHHHHHHHHhhcC--CEEEEEcc
Confidence            98731             1123445555543  58888864

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=96.65  E-value=0.02  Score=50.89  Aligned_cols=102  Identities=18%  Similarity=0.146  Sum_probs=62.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++.+++|.|++|.+|..+++.+...|.+|+++.++.++.+.+.. .+.. .++..+-.+..+.+.+...+++|.|+++.|
T Consensus       139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~-~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g  216 (329)
T cd08250         139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS-LGCD-RPINYKTEDLGEVLKKEYPKGVDVVYESVG  216 (329)
T ss_pred             CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH-cCCc-eEEeCCCccHHHHHHHhcCCCCeEEEECCc
Confidence            47899999999999999999888999999998887765544322 2111 122211111012232222224999999876


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ..              .....++.++..  +++|.+++..
T Consensus       217 ~~--------------~~~~~~~~l~~~--g~~v~~g~~~  240 (329)
T cd08250         217 GE--------------MFDTCVDNLALK--GRLIVIGFIS  240 (329)
T ss_pred             HH--------------HHHHHHHHhccC--CeEEEEeccc
Confidence            21              123344444443  5899887764

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.62  E-value=0.0088  Score=54.92  Aligned_cols=69  Identities=25%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+++|+|.|+ |.||+.+++.+...|.+|++.++++.++.....   .++..+     + .   .+.+.+ .|+||.+
T Consensus       199 ~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~---~G~~~~-----~-~---~e~v~~-aDVVI~a  264 (413)
T cd00401         199 MIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAM---EGYEVM-----T-M---EEAVKE-GDIFVTT  264 (413)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh---cCCEEc-----c-H---HHHHcC-CCEEEEC
Confidence            357999999998 999999999999999999998888777654432   233222     2 1   245567 9999998


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      +|.
T Consensus       265 tG~  267 (413)
T cd00401         265 TGN  267 (413)
T ss_pred             CCC
Confidence            763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.024  Score=49.17  Aligned_cols=105  Identities=20%  Similarity=0.238  Sum_probs=62.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc-------------------CCCCeEEEEccCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK-------------------DNPSLQIVKADVT  122 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~Dl~  122 (301)
                      .+++.-|+|.|+ |++|++++..|++.|. ++.+++-++-++..+-..                   ...-..+.+.|..
T Consensus        71 kl~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar  149 (430)
T KOG2018|consen   71 KLTNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDAR  149 (430)
T ss_pred             HhcCcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHH
Confidence            356778999997 9999999999999996 666666554433322110                   0011122222222


Q ss_pred             CC---hHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          123 EG---SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       123 ~~---~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +.   .++-.+.+.+++|.|+.|.-             |+..-..|+++|..+|.+   .+||++
T Consensus       150 ~~l~~~~s~edll~gnPdFvvDciD-------------NidtKVdLL~y~~~~~l~---Viss~G  198 (430)
T KOG2018|consen  150 NMLWTSSSEEDLLSGNPDFVVDCID-------------NIDTKVDLLEYCYNHGLK---VISSTG  198 (430)
T ss_pred             HhhcCCCchhhhhcCCCCeEeEhhh-------------hhhhhhHHHHHHHHcCCc---eEeccC
Confidence            20   12333333334788877752             566667899999998864   345544

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.58  E-value=0.017  Score=56.23  Aligned_cols=72  Identities=24%  Similarity=0.314  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~A  143 (301)
                      .++|+|.|. |-+|+.+++.|.++|+++++++.+++..+....   .+..++.+|.+| ++.++++ +.+ .|.||.+.
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~---~g~~v~~GDat~-~~~L~~agi~~-A~~vvv~~  472 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK---FGMKVFYGDATR-MDLLESAGAAK-AEVLINAI  472 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh---cCCeEEEEeCCC-HHHHHhcCCCc-CCEEEEEe
Confidence            468999997 999999999999999999999999888776643   578899999999 6666654 334 88888765

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.56  E-value=0.0087  Score=55.14  Aligned_cols=68  Identities=28%  Similarity=0.257  Sum_probs=50.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+++|+|+|. |.||+.+++.|...|.+|++.++++.+..+...   .++.     +.+    +.+++.+ .|+||.+
T Consensus       209 ~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~---~G~~-----v~~----l~eal~~-aDVVI~a  274 (425)
T PRK05476        209 LIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAM---DGFR-----VMT----MEEAAEL-GDIFVTA  274 (425)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh---cCCE-----ecC----HHHHHhC-CCEEEEC
Confidence            457999999997 999999999999999999999888766543321   1222     222    3445667 9999987


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      .|
T Consensus       275 TG  276 (425)
T PRK05476        275 TG  276 (425)
T ss_pred             CC
Confidence            75

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=96.54  E-value=0.0091  Score=53.05  Aligned_cols=101  Identities=16%  Similarity=0.078  Sum_probs=62.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~d~Vi~~  142 (301)
                      ++.+|||.|++|.+|..+++.+.+.|.+|+++.++.++.+.+...... -.++  |..+  ..+.+.+...+++|+++++
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~-~~~~--~~~~~~~~~~v~~~~~~~~d~vi~~  221 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGF-DAAI--NYKTPDLAEALKEAAPDGIDVYFDN  221 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCC-ceEE--ecCChhHHHHHHHhccCCceEEEEc
Confidence            468999999999999999999999999999988877665543211111 1122  2222  0123333332249999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      .|..              .....++.++..  +++|.+++..
T Consensus       222 ~g~~--------------~~~~~~~~l~~~--G~~v~~g~~~  247 (329)
T cd05288         222 VGGE--------------ILDAALTLLNKG--GRIALCGAIS  247 (329)
T ss_pred             chHH--------------HHHHHHHhcCCC--ceEEEEeecc
Confidence            8631              123344444433  5788887653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.54  E-value=0.033  Score=50.85  Aligned_cols=97  Identities=19%  Similarity=0.254  Sum_probs=62.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|+|.|+ |.+|...++.+...|++|++++++.++..+...+  .++..+ .|..+ .+.+.+...+ +|+||.+.|
T Consensus       178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~--lGa~~~-i~~~~-~~~v~~~~~~-~D~vid~~G  251 (375)
T PLN02178        178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR--LGADSF-LVTTD-SQKMKEAVGT-MDFIIDTVS  251 (375)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh--CCCcEE-EcCcC-HHHHHHhhCC-CcEEEECCC
Confidence            4789999986 9999999998888999998887765543222211  222222 23333 3455555566 999999987


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ..             ......++.++..  ++++.++.
T Consensus       252 ~~-------------~~~~~~~~~l~~~--G~iv~vG~  274 (375)
T PLN02178        252 AE-------------HALLPLFSLLKVS--GKLVALGL  274 (375)
T ss_pred             cH-------------HHHHHHHHhhcCC--CEEEEEcc
Confidence            32             1123445555443  58888865

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.52  E-value=0.026  Score=52.76  Aligned_cols=76  Identities=21%  Similarity=0.263  Sum_probs=52.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch--hhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +.+|+|+|+|+ |++|.++++.|++.|++|.+.+.....  ..++ .....++.++.+...+      ..+.+ .|.||.
T Consensus         3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l-~~~~~gi~~~~g~~~~------~~~~~-~d~vv~   73 (445)
T PRK04308          3 FQNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPERVAQI-GKMFDGLVFYTGRLKD------ALDNG-FDILAL   73 (445)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHH-hhccCCcEEEeCCCCH------HHHhC-CCEEEE
Confidence            35789999998 699999999999999999998766543  1111 1111356665544322      13356 999999


Q ss_pred             ccCCCCC
Q 022216          142 ATGFQPG  148 (301)
Q Consensus       142 ~Ag~~~~  148 (301)
                      ..|+.+.
T Consensus        74 spgi~~~   80 (445)
T PRK04308         74 SPGISER   80 (445)
T ss_pred             CCCCCCC
Confidence            9998753

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.51  E-value=0.01  Score=52.27  Aligned_cols=101  Identities=17%  Similarity=0.221  Sum_probs=64.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      ++.+++|+|++|.+|..+++.+...|++|+++.++.++.+.+.. ... -.++..+..+..+.+.+...+ ++|++++++
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  221 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA-LGA-AHVIVTDEEDLVAEVLRITGGKGVDVVFDPV  221 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-cCC-CEEEecCCccHHHHHHHHhCCCCceEEEECC
Confidence            46799999999999999999999999999999888766554421 111 122222222212334444432 499999988


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +..              .....++++...  +++|.++..
T Consensus       222 ~~~--------------~~~~~~~~l~~~--g~~v~~g~~  245 (328)
T cd08268         222 GGP--------------QFAKLADALAPG--GTLVVYGAL  245 (328)
T ss_pred             chH--------------hHHHHHHhhccC--CEEEEEEeC
Confidence            631              123444544443  578877654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.51  E-value=0.0083  Score=55.50  Aligned_cols=77  Identities=21%  Similarity=0.273  Sum_probs=50.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC----CCeEE-----E-EccCCCChHhHHHHhcCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN----PSLQI-----V-KADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~-----~-~~Dl~~~~~~~~~~~~~~~  136 (301)
                      |+|.|.|. |.+|..++..|++.|++|++.++++++.+.+.....    +++.-     + .+.++- ..+..+++++ +
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~~~~-a   77 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDAIRD-A   77 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHHHhh-C
Confidence            46889986 999999999999999999999999887766542110    00000     0 000110 1234455677 9


Q ss_pred             CEEEEccCCC
Q 022216          137 EAVVCATGFQ  146 (301)
Q Consensus       137 d~Vi~~Ag~~  146 (301)
                      |+||-|.+..
T Consensus        78 dvvii~vpt~   87 (411)
T TIGR03026        78 DVIIICVPTP   87 (411)
T ss_pred             CEEEEEeCCC
Confidence            9999988643

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.49  E-value=0.0067  Score=49.94  Aligned_cols=66  Identities=24%  Similarity=0.227  Sum_probs=43.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh-ccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |++.| ||+|.||..++++|++.|++|++..|+.++..+ ........       ++  ..+..++.+. .|+||...
T Consensus         2 ~~~~i-~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~-------i~--~~~~~dA~~~-aDVVvLAV   68 (211)
T COG2085           2 MIIAI-IGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPL-------IT--GGSNEDAAAL-ADVVVLAV   68 (211)
T ss_pred             cEEEE-eccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccc-------cc--cCChHHHHhc-CCEEEEec
Confidence            45555 456999999999999999999998666654333 22212222       11  2345556677 89998765

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.46  E-value=0.027  Score=51.28  Aligned_cols=99  Identities=15%  Similarity=0.091  Sum_probs=61.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+.+|+|.|+ |.+|...++.+...|+ +|+++++++++.+.... .  ++..+ .|..+  ..+.+.+...+++|+||.
T Consensus       191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~--Ga~~~-i~~~~~~~~~~i~~~~~~g~d~vid  265 (371)
T cd08281         191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-L--GATAT-VNAGDPNAVEQVRELTGGGVDYAFE  265 (371)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-c--CCceE-eCCCchhHHHHHHHHhCCCCCEEEE
Confidence            4689999985 9999999988888898 68888887776554322 2  22211 22222  123344433324999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.|..             ......++.++..  +++|.++..
T Consensus       266 ~~G~~-------------~~~~~~~~~l~~~--G~iv~~G~~  292 (371)
T cd08281         266 MAGSV-------------PALETAYEITRRG--GTTVTAGLP  292 (371)
T ss_pred             CCCCh-------------HHHHHHHHHHhcC--CEEEEEccC
Confidence            98732             1133445555544  588887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.45  E-value=0.029  Score=48.94  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      .+.+|||.|+ |.||...++.+...|.+ |+++++++++.+.... .  +...+ .|..+..+.+.+...+ .+|+||.+
T Consensus       120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~-~--Ga~~~-i~~~~~~~~~~~~~~~~g~d~vid~  194 (280)
T TIGR03366       120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRELALS-F--GATAL-AEPEVLAERQGGLQNGRGVDVALEF  194 (280)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-c--CCcEe-cCchhhHHHHHHHhCCCCCCEEEEC
Confidence            5789999987 99999999888888986 7777766665543321 1  22111 1222212333333332 49999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      .|..             ......++.++..  ++++.++..
T Consensus       195 ~G~~-------------~~~~~~~~~l~~~--G~iv~~G~~  220 (280)
T TIGR03366       195 SGAT-------------AAVRACLESLDVG--GTAVLAGSV  220 (280)
T ss_pred             CCCh-------------HHHHHHHHHhcCC--CEEEEeccC
Confidence            8732             1123345555443  588888764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.44  E-value=0.021  Score=53.63  Aligned_cols=113  Identities=15%  Similarity=0.061  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEEccCCC-----------ChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-----------GSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-----------~~~~~~~~~  132 (301)
                      +|+|.|.|. |++|..++-.|++.|  ++|+++++++++.+.+....   ..+..-++.+           ....+.+++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~---~~~~e~gl~ell~~~~~~~l~~t~~~~~~i   76 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQ---LPIYEPGLDEVVKQCRGKNLFFSTDVEKHV   76 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCC---CccCCCCHHHHHHHhhcCCEEEEcCHHHHH
Confidence            368999985 999999999999985  78999999988877654321   1111111100           012345566


Q ss_pred             cCCCCEEEEccCCCCCCCC-CCceeeehHHHHHHHHHHHHc-CCCEEEEeccc
Q 022216          133 GDDSEAVVCATGFQPGWDL-FAPWKVDNFGTVNLVEACRKR-GVNRFILISSI  183 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~~~~-~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~  183 (301)
                      .+ .|++|-|.+.....+- ......++......++...+. ..+++|.+.|+
T Consensus        77 ~~-advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST  128 (473)
T PLN02353         77 AE-ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST  128 (473)
T ss_pred             hc-CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            77 9999999986543221 111234555555555555432 22456666554

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=96.42  E-value=0.051  Score=47.47  Aligned_cols=104  Identities=15%  Similarity=0.256  Sum_probs=65.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcc----------------------ccC--CCCeEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL----------------------SKD--NPSLQIV  117 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~----------------------~~~--~~~~~~~  117 (301)
                      .+...+|||.|+ |++|.++++-|+..|. ++++.+.+.-....+-                      .+.  ..+++.+
T Consensus        16 kL~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~   94 (286)
T cd01491          16 KLQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS   94 (286)
T ss_pred             HHhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence            456789999997 9999999999999997 5777665432211110                      001  1223333


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~  188 (301)
                      ..+++      .+.+.+ .|+||.+..             |......+-++|++.++ .+|...+...+|.
T Consensus        95 ~~~~~------~~~l~~-fdvVV~~~~-------------~~~~~~~in~~c~~~~i-pfI~a~~~G~~G~  144 (286)
T cd01491          95 TGPLT------TDELLK-FQVVVLTDA-------------SLEDQLKINEFCHSPGI-KFISADTRGLFGS  144 (286)
T ss_pred             eccCC------HHHHhc-CCEEEEecC-------------CHHHHHHHHHHHHHcCC-EEEEEeccccEEE
Confidence            33221      234556 787777642             34445667788888875 7888887776654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK07877 hypothetical protein; Provisional

Probab=96.42  E-value=0.03  Score=55.07  Aligned_cols=102  Identities=19%  Similarity=0.226  Sum_probs=70.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCc---hhhhc------------------ccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLD---KAKTT------------------LSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~---~~~~~------------------~~~--~~~~~~~  116 (301)
                      ..+++.+|+|.|. | +|+.++..|+..|.  ++++++.+.-   .+...                  ..+  ...+++.
T Consensus       103 ~~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        103 ERLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            4678899999999 7 99999999999994  7887776531   11110                  000  2345666


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +...++  .+.+.+.+++ +|+||.|.-             |+..-..+-++|.+.++ -+|+-++
T Consensus       181 ~~~~i~--~~n~~~~l~~-~DlVvD~~D-------------~~~~R~~ln~~a~~~~i-P~i~~~~  229 (722)
T PRK07877        181 FTDGLT--EDNVDAFLDG-LDVVVEECD-------------SLDVKVLLREAARARRI-PVLMATS  229 (722)
T ss_pred             EeccCC--HHHHHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEcC
Confidence            666666  3678888888 999999872             34444556677888875 5666554

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.40  E-value=0.033  Score=49.82  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|||+|+ |.+|..+++.+...|++ |+++.+++++.+.... .  ++..+ .|..+. .+.+.+...+ ++|+||.
T Consensus       163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~-~--ga~~~-i~~~~~~~~~~~~~~~~~~~d~vid  237 (339)
T cd08239         163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELAKA-L--GADFV-INSGQDDVQEIRELTSGAGADVAIE  237 (339)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h--CCCEE-EcCCcchHHHHHHHhCCCCCCEEEE
Confidence            4789999986 99999999998889998 9888887766554322 1  22211 233331 2334444443 5999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.|...             .....++.++..  ++++.++..
T Consensus       238 ~~g~~~-------------~~~~~~~~l~~~--G~~v~~g~~  264 (339)
T cd08239         238 CSGNTA-------------ARRLALEAVRPW--GRLVLVGEG  264 (339)
T ss_pred             CCCCHH-------------HHHHHHHHhhcC--CEEEEEcCC
Confidence            987321             112345555544  588887753

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.39  E-value=0.077  Score=50.11  Aligned_cols=77  Identities=21%  Similarity=0.246  Sum_probs=51.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh-hcccc-CCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-TTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~-~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .+++++|+|.|+ |++|.++++.|.++|++|++++++..... ..... ...++.++.++-..       ...+ +|.||
T Consensus        13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------~~~~-~D~Vv   83 (480)
T PRK01438         13 DWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------LPED-TDLVV   83 (480)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------ccCC-CCEEE
Confidence            346789999997 99999999999999999999886543211 11000 12356665543211       2345 89999


Q ss_pred             EccCCCCC
Q 022216          141 CATGFQPG  148 (301)
Q Consensus       141 ~~Ag~~~~  148 (301)
                      ...|+.+.
T Consensus        84 ~s~Gi~~~   91 (480)
T PRK01438         84 TSPGWRPD   91 (480)
T ss_pred             ECCCcCCC
Confidence            99987653

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.35  E-value=0.024  Score=53.38  Aligned_cols=105  Identities=13%  Similarity=0.127  Sum_probs=67.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-------------h------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-------------S------  125 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-------------~------  125 (301)
                      .+.+++|.|+ |.+|...+..+...|..|++++++++.++....   -+.+++..|..+.             +      
T Consensus       163 p~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~---lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~  238 (511)
T TIGR00561       163 PPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS---MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM  238 (511)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCeEEeccccccccccccceeecCHHHHHHHH
Confidence            3579999997 999999999999999999999998877665432   3445555554210             1      


Q ss_pred             HhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       126 ~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.+.+.+++ .|+||+++-+.....+. .+      +...++.++..  ..||-++.-
T Consensus       239 ~~~~e~~~~-~DIVI~TalipG~~aP~-Li------t~emv~~MKpG--svIVDlA~d  286 (511)
T TIGR00561       239 ELFAAQAKE-VDIIITTALIPGKPAPK-LI------TEEMVDSMKAG--SVIVDLAAE  286 (511)
T ss_pred             HHHHHHhCC-CCEEEECcccCCCCCCe-ee------hHHHHhhCCCC--CEEEEeeeC
Confidence            113445566 99999998443322221 11      34445555443  357767653

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=96.35  E-value=0.013  Score=51.48  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=61.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+++|+|++|.+|..+++.+...|++|+++.++.++.+.. ...  ++..+ .+..+  ..+.+.+...+ ++|.+|+
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~--g~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~  214 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL--GADIA-INYREEDFVEVVKAETGGKGVDVILD  214 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc--CCcEE-EecCchhHHHHHHHHcCCCCeEEEEE
Confidence            478999999999999999999999999999988876655432 211  12111 12222  11333333332 4999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ++|..              .....++.+...  +++|.++..
T Consensus       215 ~~~~~--------------~~~~~~~~l~~~--g~~v~~g~~  240 (325)
T TIGR02824       215 IVGGS--------------YLNRNIKALALD--GRIVQIGFQ  240 (325)
T ss_pred             CCchH--------------HHHHHHHhhccC--cEEEEEecC
Confidence            98621              122233444333  588888764

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=96.32  E-value=0.016  Score=51.29  Aligned_cols=99  Identities=17%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|||.|++|.+|..+++.+.+.|.+|+++.++.++.+.+.. .  ++..+. +..+  ..+.+.+...+ ++|+|+.
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~--g~~~~~-~~~~~~~~~~i~~~~~~~~~d~v~d  214 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-L--GIGPVV-STEQPGWQDKVREAAGGAPISVALD  214 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-c--CCCEEE-cCCCchHHHHHHHHhCCCCCcEEEE
Confidence            47899999999999999999999999999998887766554432 2  222211 2222  12344444443 5999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.|...              ....++.++..  ++||.++..
T Consensus       215 ~~g~~~--------------~~~~~~~l~~~--g~~v~~g~~  240 (324)
T cd08292         215 SVGGKL--------------AGELLSLLGEG--GTLVSFGSM  240 (324)
T ss_pred             CCCChh--------------HHHHHHhhcCC--cEEEEEecC
Confidence            887320              23445555443  588887653

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=96.27  E-value=0.086  Score=45.12  Aligned_cols=92  Identities=16%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag  144 (301)
                      +++|||.|||+- |+.+++.|.++|+.|++..-.....   .  ....+.+..+-+.+ .+.+.+.+.+ +++.||...-
T Consensus         2 ~~~IlvlgGT~e-gr~la~~L~~~g~~v~~Svat~~g~---~--~~~~~~v~~G~l~~-~~~l~~~l~~~~i~~VIDATH   74 (248)
T PRK08057          2 MPRILLLGGTSE-ARALARALAAAGVDIVLSLAGRTGG---P--ADLPGPVRVGGFGG-AEGLAAYLREEGIDLVIDATH   74 (248)
T ss_pred             CceEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCCC---c--ccCCceEEECCCCC-HHHHHHHHHHCCCCEEEECCC
Confidence            468999999764 8999999999999888876554332   1  23577888888877 7889998875 6999998653


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCC
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVN  175 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~  175 (301)
                      +.         .  ..-+.+..++|++.++.
T Consensus        75 Pf---------A--~~is~~a~~ac~~~~ip   94 (248)
T PRK08057         75 PY---------A--AQISANAAAACRALGIP   94 (248)
T ss_pred             cc---------H--HHHHHHHHHHHHHhCCc
Confidence            21         1  12245566666655543

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.26  E-value=0.02  Score=45.46  Aligned_cols=59  Identities=29%  Similarity=0.376  Sum_probs=41.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++||+|+|.|.+..+|+.++..|.++|+.|++.....                         ..+.+..++ .|+||-
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------------------~~l~~~~~~-ADIVVs   85 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------------------KNLQEITRR-ADIVVS   85 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------------------SSHHHHHTT-SSEEEE
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------------------Ccccceeee-ccEEee
Confidence            457899999999999999999999999999999854321                         224555566 888888


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      .+|..
T Consensus        86 a~G~~   90 (160)
T PF02882_consen   86 AVGKP   90 (160)
T ss_dssp             -SSST
T ss_pred             eeccc
Confidence            87754

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.26  E-value=0.011  Score=49.53  Aligned_cols=38  Identities=24%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      ++++++|+|.|- |.+|+++++.|.+.|..|+.+.....
T Consensus        20 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SLEGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            567999999996 99999999999999997777654433

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=96.26  E-value=0.019  Score=50.76  Aligned_cols=99  Identities=18%  Similarity=0.170  Sum_probs=64.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+++|+|++|.+|..+++.+...|.+|+++.++.++.+.+.. ..  +..+ .|..+  ..+.+.+...+ ++|.|++
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g--~~~~-~~~~~~~~~~~~~~~~~~~~~d~vl~  217 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA-LG--ADVA-VDYTRPDWPDQVREALGGGGVTVVLD  217 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC--CCEE-EecCCccHHHHHHHHcCCCCceEEEE
Confidence            46799999999999999999999999999998888766554321 22  2211 12222  12344444443 5999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.|..              .....++++...  +++|.++..
T Consensus       218 ~~g~~--------------~~~~~~~~l~~~--g~~v~~g~~  243 (324)
T cd08244         218 GVGGA--------------IGRAALALLAPG--GRFLTYGWA  243 (324)
T ss_pred             CCChH--------------hHHHHHHHhccC--cEEEEEecC
Confidence            97621              124445555444  588888764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.23  E-value=0.061  Score=48.43  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=28.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDL  100 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~  100 (301)
                      ++|.|+|++|++|+++++.|.+++ .++..+.++.
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~   35 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASP   35 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEECh
Confidence            479999999999999999998876 5888775443

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PLN02494 adenosylhomocysteinase

Probab=96.23  E-value=0.018  Score=53.41  Aligned_cols=69  Identities=23%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+++|+|.|. |.||+.+++.+...|.+|++..+++.+..+...   .+..++     +    +.+++.. .|+||.+
T Consensus       251 ~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~---~G~~vv-----~----leEal~~-ADVVI~t  316 (477)
T PLN02494        251 MIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALM---EGYQVL-----T----LEDVVSE-ADIFVTT  316 (477)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh---cCCeec-----c----HHHHHhh-CCEEEEC
Confidence            357999999997 999999999999999999998888765433221   222221     2    3345667 8999987


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      .|.
T Consensus       317 TGt  319 (477)
T PLN02494        317 TGN  319 (477)
T ss_pred             CCC
Confidence            653

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.22  E-value=0.0096  Score=52.60  Aligned_cols=105  Identities=19%  Similarity=0.134  Sum_probs=65.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccc---cC----CCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLS---KD----NPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~---~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      |.|.|+ |.+|..++..|+..|. +|++++++++.......   ..    ..... +.  .+.   . .+.+++ .|+||
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~-I~--~t~---d-~~~l~d-ADiVI   71 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTK-VT--GTN---D-YEDIAG-SDVVV   71 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeE-EE--EcC---C-HHHhCC-CCEEE
Confidence            468998 9999999999998876 99999988764321111   00    01111 11  111   1 235788 99999


Q ss_pred             EccCCCCCCC--CCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          141 CATGFQPGWD--LFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       141 ~~Ag~~~~~~--~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      .++|.....+  ....+..|+.-...+++.+.+...+ .+|.+|.
T Consensus        72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN  116 (300)
T cd01339          72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN  116 (300)
T ss_pred             EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9998654322  1223455777777788877776544 4455554

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.20  E-value=0.078  Score=45.43  Aligned_cols=73  Identities=27%  Similarity=0.414  Sum_probs=52.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      |+|||.|||+- |+.+++.|.++|+ |.+..-..-. .+........+.++.+-+.+ .+.+.+.+++ +++.||...
T Consensus         1 m~ILvlgGTtE-~r~la~~L~~~g~-v~~sv~t~~g-~~~~~~~~~~~~v~~G~lg~-~~~l~~~l~~~~i~~vIDAT   74 (249)
T PF02571_consen    1 MKILVLGGTTE-GRKLAERLAEAGY-VIVSVATSYG-GELLKPELPGLEVRVGRLGD-EEGLAEFLRENGIDAVIDAT   74 (249)
T ss_pred             CEEEEEechHH-HHHHHHHHHhcCC-EEEEEEhhhh-HhhhccccCCceEEECCCCC-HHHHHHHHHhCCCcEEEECC
Confidence            78999999765 7999999999998 5544333222 22221133567888888877 7888888875 699999865

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.20  E-value=0.021  Score=44.30  Aligned_cols=59  Identities=24%  Similarity=0.306  Sum_probs=47.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++||+|+|.|.+.-+|..++..|.++|++|++..++.                         .++.+.+++ .|+||-
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------------------~~l~~~v~~-ADIVvs   77 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------------------IQLQSKVHD-ADVVVV   77 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------------------cCHHHHHhh-CCEEEE
Confidence            466899999999999999999999999999999865431                         124556667 888888


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      ..|..
T Consensus        78 Atg~~   82 (140)
T cd05212          78 GSPKP   82 (140)
T ss_pred             ecCCC
Confidence            87754

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.19  E-value=0.026  Score=50.19  Aligned_cols=75  Identities=19%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--------CCCCeE--EEEccCCCChHhHHHHhcCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--------DNPSLQ--IVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~--~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      -++|.|.|+ |-+|..++..|+..|++|++.+++++..+.....        ...+..  .....++- ..++.+++.+ 
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~-~~~l~~av~~-   83 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF-VATIEACVAD-   83 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee-cCCHHHHhcC-
Confidence            368999997 9999999999999999999999987654432110        000000  00011111 2346678888 


Q ss_pred             CCEEEEcc
Q 022216          136 SEAVVCAT  143 (301)
Q Consensus       136 ~d~Vi~~A  143 (301)
                      +|.||-+.
T Consensus        84 aDlViEav   91 (321)
T PRK07066         84 ADFIQESA   91 (321)
T ss_pred             CCEEEECC
Confidence            99999886

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=96.19  E-value=0.069  Score=49.36  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC------eEEEEEeCCchhhhcc----------------------cc--CCCCeEEE
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF------AVKAGVRDLDKAKTTL----------------------SK--DNPSLQIV  117 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~------~V~~~~r~~~~~~~~~----------------------~~--~~~~~~~~  117 (301)
                      +|||.|+ |+||.++++.|+..|.      ++++++.+.-....+-                      .+  ...+++.+
T Consensus         1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~   79 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL   79 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence            4899996 9999999999999998      7887776532211100                      00  22344444


Q ss_pred             EccCCCChHh-H-HHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccc
Q 022216          118 KADVTEGSAK-L-SEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV  185 (301)
Q Consensus       118 ~~Dl~~~~~~-~-~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~  185 (301)
                      ...+....+. + .+.+.+ .|+||++.-             |+..-..+-+.|...++ .+|..++.+.
T Consensus        80 ~~~v~~~~~~~~~~~f~~~-~DvVi~alD-------------n~~aR~~vn~~C~~~~i-Pli~~gt~G~  134 (435)
T cd01490          80 QNRVGPETEHIFNDEFWEK-LDGVANALD-------------NVDARMYVDRRCVYYRK-PLLESGTLGT  134 (435)
T ss_pred             ecccChhhhhhhhHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHhCC-CEEEEecccc
Confidence            4444321111 1 233455 777776641             45555677788887764 4666655443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.19  E-value=0.046  Score=49.25  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=61.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHh----cC-CCC-
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAI----GD-DSE-  137 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~----~~-~~d-  137 (301)
                      .+.+|+|.|+ |.+|...++.+...|.+|+++++++++.+.... .  ++..+ .|..+. .+.+.+.+    .+ ++| 
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~-~--Ga~~~-i~~~~~~~~~~~~~~~~~t~~~g~d~  240 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG-F--GADLT-LNPKDKSAREVKKLIKAFAKARGLRS  240 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-h--CCceE-ecCccccHHHHHHHHHhhcccCCCCC
Confidence            4789999999 999999999999999999998888777654432 2  22211 222221 12233222    21 254 


Q ss_pred             ---EEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          138 ---AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       138 ---~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                         +||.|.|..             .+....++.++..  ++++.++..
T Consensus       241 ~~d~v~d~~g~~-------------~~~~~~~~~l~~~--G~iv~~G~~  274 (349)
T TIGR03201       241 TGWKIFECSGSK-------------PGQESALSLLSHG--GTLVVVGYT  274 (349)
T ss_pred             CcCEEEECCCCh-------------HHHHHHHHHHhcC--CeEEEECcC
Confidence               788877632             1223345666554  588888764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.19  E-value=0.032  Score=45.58  Aligned_cols=80  Identities=18%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++||+|+|.|-+.-+|+-++..|+++|++|+++..+......-   . .....-.....|.+..+.+.+++ .|+||-
T Consensus        58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~---~-~~~~hs~t~~~~~~~~l~~~~~~-ADIVIs  132 (197)
T cd01079          58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTR---G-ESIRHEKHHVTDEEAMTLDCLSQ-SDVVIT  132 (197)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccccc---c-cccccccccccchhhHHHHHhhh-CCEEEE
Confidence            367899999999999999999999999999999875443221100   0 00000011111212347778888 999999


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      ++|..
T Consensus       133 AvG~~  137 (197)
T cd01079         133 GVPSP  137 (197)
T ss_pred             ccCCC
Confidence            98854

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.19  E-value=0.045  Score=49.76  Aligned_cols=100  Identities=13%  Similarity=0.041  Sum_probs=61.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCC----hHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG----SAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~----~~~~~~~~~~~~d~V  139 (301)
                      .+.+|||+|+ |.||...++.+...|. +|+++++++++.+.... .  ++.. ..|..+.    .+.+.+...+.+|++
T Consensus       185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~-~--Ga~~-~i~~~~~~~~~~~~v~~~~~~g~d~v  259 (368)
T TIGR02818       185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELAKK-L--GATD-CVNPNDYDKPIQEVIVEITDGGVDYS  259 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-h--CCCe-EEcccccchhHHHHHHHHhCCCCCEE
Confidence            4789999986 9999999988888898 79888887776554432 2  2211 1233220    133434333249999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |.++|..             ......++.++.. .++++.++..
T Consensus       260 id~~G~~-------------~~~~~~~~~~~~~-~G~~v~~g~~  289 (368)
T TIGR02818       260 FECIGNV-------------NVMRAALECCHKG-WGESIIIGVA  289 (368)
T ss_pred             EECCCCH-------------HHHHHHHHHhhcC-CCeEEEEecc
Confidence            9998731             1123344444432 2588888753

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.19  E-value=0.0071  Score=53.36  Aligned_cols=103  Identities=19%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             EEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           71 VAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        71 VtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      |.|+ |.+|..++-.|+..+.  ++++++++.+.+.....+       ...++.+. .  .+     .+.+++ .|+||.
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~-----~~~~~d-aDivVi   70 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-S--GD-----YSDCKD-ADLVVI   70 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-c--CC-----HHHHCC-CCEEEE
Confidence            4565 9999999999998874  788888876544332211       11122222 1  12     456788 999999


Q ss_pred             ccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEeccc
Q 022216          142 ATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~  183 (301)
                      +||...  ..+....++.|..-...+.+.+++++. ..+|.+|..
T Consensus        71 tag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP  115 (299)
T TIGR01771        71 TAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNP  115 (299)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            999643  334556678899888999999988764 356666653

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.18  E-value=0.014  Score=53.16  Aligned_cols=35  Identities=20%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      ..++|.|.||.|.+|..+++.|.++|++|++.+|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            35799999999999999999999999999998874

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.16  E-value=0.023  Score=52.81  Aligned_cols=69  Identities=26%  Similarity=0.289  Sum_probs=50.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.+|+|+|.|. |.||+.+++.|...|.+|++..+++....+...   .++..     .+    +.+++.. .|+||.
T Consensus       250 ~~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~---~G~~~-----~~----leell~~-ADIVI~  315 (476)
T PTZ00075        250 VMIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAM---EGYQV-----VT----LEDVVET-ADIFVT  315 (476)
T ss_pred             CCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh---cCcee-----cc----HHHHHhc-CCEEEE
Confidence            3468999999997 889999999999999999998887665432211   12221     12    4456777 999998


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      +.|
T Consensus       316 atG  318 (476)
T PTZ00075        316 ATG  318 (476)
T ss_pred             CCC
Confidence            865

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.15  E-value=0.034  Score=50.97  Aligned_cols=111  Identities=15%  Similarity=0.089  Sum_probs=60.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCC----CeEE----EEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP----SLQI----VKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~----~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      |+|.|.|. |++|..++..|+ .|++|++.++++++.+++.....+    .+.-    ..+.++. ..+..++..+ +|+
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~-t~~~~~~~~~-ad~   76 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNA-TLDKNEAYRD-ADY   76 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEE-ecchhhhhcC-CCE
Confidence            46888875 999999997666 599999999999887765532111    0000    0011111 1113344567 999


Q ss_pred             EEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecccc
Q 022216          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSIL  184 (301)
Q Consensus       139 Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~~  184 (301)
                      ||-|.+...+.+. .  ..|+......++.+.+... .-+|.-||..
T Consensus        77 vii~Vpt~~~~k~-~--~~dl~~v~~v~~~i~~~~~g~lVV~~STv~  120 (388)
T PRK15057         77 VIIATPTDYDPKT-N--YFNTSSVESVIKDVVEINPYAVMVIKSTVP  120 (388)
T ss_pred             EEEeCCCCCccCC-C--CcChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence            9998764322111 1  1233444444443332222 3455566653

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=96.15  E-value=0.088  Score=45.67  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=68.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++++|+|.||+|-+|+-+-+-..-.|..|++..-+.++..-++.+.+-...+-.-+=.|..+.+.+.+...+|+-|-|.|
T Consensus       153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVG  232 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVG  232 (343)
T ss_pred             CCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccC
Confidence            57999999999999995554444459999998877776655443222111111111111124455554446999999987


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM  190 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~  190 (301)
                      -.              ....++..++.+  +||+..+-++.|....
T Consensus       233 G~--------------~lDavl~nM~~~--gri~~CG~ISqYN~~~  262 (343)
T KOG1196|consen  233 GK--------------MLDAVLLNMNLH--GRIAVCGMISQYNLEN  262 (343)
T ss_pred             cH--------------HHHHHHHhhhhc--cceEeeeeehhccccC
Confidence            42              123345555555  5899999888886443

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=96.13  E-value=0.023  Score=50.03  Aligned_cols=99  Identities=17%  Similarity=0.130  Sum_probs=62.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|+|.|++|.+|..+++.+...|++|+++.+++++.+.+..   .++..+..+-.+..+.+.+. +.++|.++++.|
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~~  217 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE---LGADEVVIDDGAIAEQLRAA-PGGFDKVLELVG  217 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh---cCCcEEEecCccHHHHHHHh-CCCceEEEECCC
Confidence            46899999999999999999999999999988887766544321   22222221211112334444 335999999886


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ..              .....++.+...  ++++.++..
T Consensus       218 ~~--------------~~~~~~~~l~~~--g~~v~~g~~  240 (320)
T cd08243         218 TA--------------TLKDSLRHLRPG--GIVCMTGLL  240 (320)
T ss_pred             hH--------------HHHHHHHHhccC--CEEEEEccC
Confidence            21              123344444443  578887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=96.12  E-value=0.028  Score=51.65  Aligned_cols=71  Identities=17%  Similarity=0.233  Sum_probs=53.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      +.|+|+|+|+ |.+|..+++++.+.|++|++++.++........   .  ..+..|..| .+.+.+..+. ++|.|+-.
T Consensus        11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~a---d--~~~~~~~~d-~~~l~~~~~~~~id~vi~~   82 (395)
T PRK09288         11 SATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQVA---H--RSHVIDMLD-GDALRAVIEREKPDYIVPE   82 (395)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhh---h--heEECCCCC-HHHHHHHHHHhCCCEEEEe
Confidence            4679999997 789999999999999999998877654221111   1  246678888 7888887773 49998864

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.12  E-value=0.067  Score=48.09  Aligned_cols=100  Identities=16%  Similarity=0.229  Sum_probs=61.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCC-EEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSE-AVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d-~Vi~  141 (301)
                      .+.+|+|+|+ |.+|..+++.+...|.+ |+++++++++.+.... ... -.++..+-.+ .+.+.+...+ ++| ++|.
T Consensus       160 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~Ga-~~~i~~~~~~-~~~~~~~~~~~~~d~~v~d  235 (347)
T PRK10309        160 EGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGA-MQTFNSREMS-APQIQSVLRELRFDQLILE  235 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCC-ceEecCcccC-HHHHHHHhcCCCCCeEEEE
Confidence            4789999975 99999999988889997 6777777766554321 211 1122211112 2345555543 478 8889


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |+|..             ......+++++..  ++++.++..
T Consensus       236 ~~G~~-------------~~~~~~~~~l~~~--G~iv~~G~~  262 (347)
T PRK10309        236 TAGVP-------------QTVELAIEIAGPR--AQLALVGTL  262 (347)
T ss_pred             CCCCH-------------HHHHHHHHHhhcC--CEEEEEccC
Confidence            88742             1123445555554  578887654

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.12  E-value=0.025  Score=51.61  Aligned_cols=68  Identities=21%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +++|+|.|+ |.+|+.++.++.+.|++|++++.++.......     --..+.+|..| .+.+.+.... +|+|..
T Consensus         2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~-----ad~~~~~~~~D-~~~l~~~a~~-~dvit~   69 (372)
T PRK06019          2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV-----ADEVIVADYDD-VAALRELAEQ-CDVITY   69 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh-----CceEEecCCCC-HHHHHHHHhc-CCEEEe
Confidence            478999998 89999999999999999999987655432211     11355678888 8889888888 998753

>PRK06153 hypothetical protein; Provisional

Probab=96.07  E-value=0.065  Score=48.52  Aligned_cols=101  Identities=13%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC---chh---------hhc-------------cccCCCCeEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL---DKA---------KTT-------------LSKDNPSLQI  116 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~---~~~---------~~~-------------~~~~~~~~~~  116 (301)
                      .+++.+|+|.|+ ||+|+.++..|++.|. ++++++.+.   +.+         +++             ......++..
T Consensus       173 kL~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~  251 (393)
T PRK06153        173 KLEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP  251 (393)
T ss_pred             HHhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence            457889999998 9999999999999996 677665441   000         110             0012234555


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +...+ + ++.+. .+.+ +|+||.|..             |..+-..+.++|.+.++ -+|.++-
T Consensus       252 ~~~~I-~-~~n~~-~L~~-~DiV~dcvD-------------n~~aR~~ln~~a~~~gI-P~Id~G~  299 (393)
T PRK06153        252 HPEYI-D-EDNVD-ELDG-FTFVFVCVD-------------KGSSRKLIVDYLEALGI-PFIDVGM  299 (393)
T ss_pred             EeecC-C-HHHHH-HhcC-CCEEEEcCC-------------CHHHHHHHHHHHHHcCC-CEEEeee
Confidence            55555 3 34443 5677 999998874             34444556777888775 3555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
3e8x_A	236	Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BA		4e-14
1xq6_A	253	X-ray Structure Of Gene Product From Arabidopsis Th		7e-11
3dqp_A	219	Crystal Structure Of The Oxidoreductase Ylbe From L		1e-09
2q1w_A	333	Crystal Structure Of The Bordetella Bronchiseptica		3e-08
3dhn_A	227	Crystal Structure Of The Putative Epimerase Q89z24_		2e-06
1hdo_A	206	Human Biliverdin Ix Beta Reductase: Nadp Complex Le		9e-06

>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS HALODURANS Length = 236

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 15/223 (6%)
Query: 60  ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA 119
           EN+  +  ++ V GA G   + ++ +L  KG    A VR+ ++      ++  +  IV A
Sbjct: 15  ENLYFQGXRVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGPEL--RERGASDIVVA 72
Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
           ++ E  +    +I    +AVV A G  P         +D +G +  ++   KRG+ RFI 
Sbjct: 73  NLEEDFSHAFASI----DAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIX 128
Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPT 239
           +SS+       G      Y         L+AK  A+  +++S ++YTI+RPG L NE  T
Sbjct: 129 VSSVGTVDPDQGPXNXRHY---------LVAKRLADDELKRSSLDYTIVRPGPLSNEEST 179
Query: 240 GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS 282
           G + +    +    +I+R  VA+V  E +    +  K  E+++
Sbjct: 180 GKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLN 222

>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana At5g02240 Length = 253

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 41/260 (15%)
Query: 69  IFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
           + V GA+G +G +IV + L +G   F  K  VR    +     K      +   D+T+  
Sbjct: 7   VLVTGASGRTG-QIVYKKLKEGSDKFVAKGLVR----SAQGKEKIGGEADVFIGDITDAD 61
Query: 126 AKLSEAIGDDSEAVVCAT--GFQPGWD---------LFA----PWKVDNFGTVNLVEACR 170
           +      G D+  ++ +     +PG+D         +F     P +VD  G  N ++A +
Sbjct: 62  SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121
Query: 171 KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL--TLIAKLQAEQYIRKSGINYTII 228
             GV   +++ S       MG   NP +  LN  G    L+ K +AEQY+  SG  YTII
Sbjct: 122 VAGVKHIVVVGS-------MGGT-NPDHP-LNKLGNGNILVWKRKAEQYLADSGTPYTII 172
Query: 229 RPGGLRN-EPPTGNIIMETEDTLYE---GTISRDQVAEVAVEALLHPESSYKVVEIISRV 284
           R GGL + E     +++  +D L +    T+ R  VAEV ++ALL  E+  K  ++ S+ 
Sbjct: 173 RAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKP 232
Query: 285 DA---PKRSYEDLFGSIKQR 301
           +    P + ++ LF  +  R
Sbjct: 233 EGTSTPTKDFKALFSQVTSR 252

>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From Lactococcus Lactis, Northeast Structural Genomics Consortium Target Kr121 Length = 219

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 30/188 (15%)
Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA---DVTEG 124
           KIF+ G+TG  GK +++ L    + + AG R +++         P    VKA   DV   
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV--------PQYNNVKAVHFDVDWT 53
Query: 125 SAKLSEAI-GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
             + ++ + G D+   V  +G   G  L    KVD +G V L +A  K  V RFIL+S+I
Sbjct: 54  PEEXAKQLHGXDAIINVSGSG---GKSLL---KVDLYGAVKLXQAAEKAEVKRFILLSTI 107
Query: 184 LVNGAAMGQILNPAYIF---LNVFGLTLIAKLQAEQYIRK-SGINYTIIRPGGLRNEPPT 239
                     L P        +      IAK  A+ Y+ K + ++YTII+PG L  E  T
Sbjct: 108 FS--------LQPEKWIGAGFDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTEEEAT 159
Query: 240 GNIIMETE 247
           G I +  E
Sbjct: 160 GLIDINDE 167

>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           KK+F+ G  G  G  I E LL +G  V  G+ +    +    KD+P+L  V+  + +  A
Sbjct: 22  KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKDHPNLTFVEGSIAD-HA 79
Query: 127 KLSEAIGD-DSEAVV-CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
            +++ IGD   +AVV  A  ++   D +     +  G  N+V+A +K  V RF+   + L
Sbjct: 80  LVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTAL 139
Query: 185 VNGAA-------MGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
             G         +    NPA           I+K   E Y+  SG+++   R
Sbjct: 140 CYGVKPIQQPVRLDHPRNPAN------SSYAISKSANEDYLEYSGLDFVTFR 185

>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Consortium Target Btr310 Length = 227

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K KKI + GA+G  G  ++ + L +GF V A VR  +K K     +N  L++ KADV+  
Sbjct: 3   KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI----ENEHLKVKKADVSSL 58
Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNL--VEACRKRGVNRFILISS 182
                   G D  AV+ A  F PGW+   P   D    V L  ++  +K GVNRF+ +  
Sbjct: 59  DEVCEVCKGAD--AVISA--FNPGWN--NPDIYDETIKVYLTIIDGVKKAGVNRFLXVGG 112

>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex Length = 206

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEGS 125
           KKI + GATG +G   + Q +  G+ V   VRD     + L  + P    +V  DV + +
Sbjct: 4   KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD----SSRLPSEGPRPAHVVVGDVLQAA 59
Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
                  G D+  V+  T      +  +P  V + G  N+V A +  GV++ +  +S  +
Sbjct: 60  DVDKTVAGQDAVIVLLGT-----RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL 114
Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTG 240
                  + +P  +   +  +T    ++  + +R+SG+ Y  + P  + ++P TG
Sbjct: 115 -------LWDPTKVPPRLQAVT-DDHIRMHKVLRESGLKYVAVMPPHIGDQPLTG 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	8e-69
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	4e-64
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	3e-61
1xq6_A	253	Unknown protein; structural genomics, protein stru	3e-55
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	2e-52
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	2e-42
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	2e-41
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	2e-31
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	4e-30
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	3e-23
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	3e-23
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	7e-22
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	1e-21
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	2e-21
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	3e-21
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	8e-21
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	2e-19
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	4e-19
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	5e-19
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	6e-19
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	5e-18
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	5e-17
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	1e-15
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	3e-15
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	1e-14
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	3e-14
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	6e-13
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	3e-12
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	4e-12
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	9e-12
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	5e-11
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	7e-11
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	1e-10
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	2e-09
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	9e-09
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	1e-08
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	1e-07
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	3e-07
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	6e-07
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	6e-07
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	6e-07
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	2e-06
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	2e-06
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	2e-06
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	2e-06
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	3e-06
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	4e-06
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	5e-06
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	9e-06
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	1e-05
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	2e-05
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	4e-05
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	5e-05
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	6e-05
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	9e-05
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	9e-05
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	1e-04
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	1e-04
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-04
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	2e-04
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	4e-04
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	5e-04
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	6e-04
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	7e-04

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score =  212 bits (543), Expect = 8e-69
 Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 15/227 (6%)

Query: 56  EEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQ 115
               EN+  +  ++ V GA G   + ++ +L  KG    A VR+ ++      ++  +  
Sbjct: 11  SSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL--RERGASD 68

Query: 116 IVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN 175
           IV A++ E     S A     +AVV A G  P         +D +G +  ++   KRG+ 
Sbjct: 69  IVVANLEE---DFSHAF-ASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIK 124

Query: 176 RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRN 235
           RFI++SS+       G +    Y         L+AK  A+  +++S ++YTI+RPG L N
Sbjct: 125 RFIMVSSVGTVDPDQGPMNMRHY---------LVAKRLADDELKRSSLDYTIVRPGPLSN 175

Query: 236 EPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS 282
           E  TG + +    +    +I+R  VA+V  E +    +  K  E+++
Sbjct: 176 EESTGKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLN 222

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score =  200 bits (510), Expect = 4e-64
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 19/229 (8%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KIF+ G+TG  GK +++ L    + + AG R +++          +++ V  DV     +
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV-----PQYNNVKAVHFDVDWTPEE 56

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG 187
           +++ +    +A++  +G        +  KVD +G V L++A  K  V RFIL+S+I    
Sbjct: 57  MAKQL-HGMDAIINVSGSGGK----SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQ 111

Query: 188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-SGINYTIIRPGGLRNEPPTGNIIMET 246
                         +      IAK  A+ Y+ K + ++YTII+PG L  E  TG I +  
Sbjct: 112 PE-----KWIGAGFDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTEEEATGLIDIND 166

Query: 247 EDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLF 295
           E +    + +   VA+   E ++   S  KV+ + +   A K + E L 
Sbjct: 167 EVS---ASNTIGDVADTIKELVMTDHSIGKVISMHNGKTAIKEALESLL 212

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score =  192 bits (489), Expect = 3e-61
 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 16/208 (7%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
             KKI + GATG +G   + Q +  G+ V   VRD  +  +          +V  DV + 
Sbjct: 2   AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP---RPAHVVVGDVLQ- 57

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
           +A + + +    +AV+   G +       P  V + G  N+V A +  GV++ +  +S  
Sbjct: 58  AADVDKTV-AGQDAVIVLLGTRNDLS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIM 244
           +        L                 ++  + +R+SG+ Y  + P  + ++P TG   +
Sbjct: 114 L--------LWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTV 165

Query: 245 ETEDTLYEGTISRDQVAEVAVEALLHPE 272
             +       IS+  +    +  L   E
Sbjct: 166 TLDGRGPSRVISKHDLGHFMLRCLTTDE 193

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score =  178 bits (454), Expect = 3e-55
 Identities = 66/265 (24%), Positives = 109/265 (41%), Gaps = 39/265 (14%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKAD 120
           S     + V GA+G +G+ + ++L      F  K  VR     +           +   D
Sbjct: 1   SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG----GEADVFIGD 56

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGW-----------------DLFAPWKVDNFGTV 163
           +T+ +  ++ A     +A+V  T   P                   D   P +VD  G  
Sbjct: 57  ITD-ADSINPAF-QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQK 114

Query: 164 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI 223
           N ++A +  GV   +++ S+   G      LN         G  L+ K +AEQY+  SG 
Sbjct: 115 NQIDAAKVAGVKHIVVVGSM--GGTNPDHPLNKL-----GNGNILVWKRKAEQYLADSGT 167

Query: 224 NYTIIRPGGLRNEPPTG-NIIMETEDTLY---EGTISRDQVAEVAVEALLHPESSYKVVE 279
            YTIIR GGL ++      +++  +D L      T+ R  VAEV ++ALL  E+  K  +
Sbjct: 168 PYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFD 227

Query: 280 IISRVDAPKRSYED---LFGSIKQR 301
           + S+ +      +D   LF  +  R
Sbjct: 228 LGSKPEGTSTPTKDFKALFSQVTSR 252

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score =  170 bits (433), Expect = 2e-52
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 25/241 (10%)

Query: 49  MGKSEITEEAEENVSV-----KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDK 102
           MG S                   K + + GA G   + ++ QL  K         R   K
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK 60

Query: 103 AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGT 162
                  +    QI+  DV    A L +A+    + V      +            +   
Sbjct: 61  IHKPYPTN---SQIIMGDVLN-HAALKQAM-QGQDIVYANLTGEDL----------DIQA 105

Query: 163 VNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG 222
            +++ A +   V R I + S+ +     G+ +        V G  L    +A   I  SG
Sbjct: 106 NSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNN---AVIGEPLKPFRRAADAIEASG 162

Query: 223 INYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPES-SYKVVEII 281
           + YTI+RP  L +E      +    +      +SR  VA +  + +  PE    + + I 
Sbjct: 163 LEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGIN 222

Query: 282 S 282
            
Sbjct: 223 Q 223

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score =  144 bits (365), Expect = 2e-42
 Identities = 38/216 (17%), Positives = 79/216 (36%), Gaps = 18/216 (8%)

Query: 68  KIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            I + GA G   + +   LL      +    R L         D+  + +++        
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQN-PG 65

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
            L +A+  ++E V                        ++V+A  +  + R I +S   ++
Sbjct: 66  XLEQAV-TNAEVVFVGAMESGS------------DMASIVKALSRXNIRRVIGVSMAGLS 112

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNI-IME 245
           G     +    + F N+    +  + QA   +R+S +NYTI+R   L N+P   +  ++ 
Sbjct: 113 GEFPVAL--EKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYNDPEXTDYELIP 170

Query: 246 TEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEII 281
                 +  +SR+ V +   + L   + +      I
Sbjct: 171 EGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSI 206

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score =  142 bits (359), Expect = 2e-41
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 15/223 (6%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K KKI + GA+G  G  ++ + L +GF V A VR  +K K     +N  L++ KADV+  
Sbjct: 3   KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIK----IENEHLKVKKADVSSL 58

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              + E     ++AV+ A    PGW+    +       + +++  +K GVNRF+++    
Sbjct: 59  DE-VCEVC-KGADAVISAFN--PGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG 114

Query: 185 VNGAAMGQIL--NPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG-LRNEPPTGN 241
               A G  L  +       + G+  + +      +++  I++    P   +R    TG 
Sbjct: 115 SLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGR 174

Query: 242 IIMETEDTLY----EGTISRDQVAEVAVEALLHPESSYKVVEI 280
             +  +D +        IS +  A   ++ L HP+   +   I
Sbjct: 175 YRLGKDDMIVDIVGNSHISVEDYAAAMIDELEHPKHHQERFTI 217

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score =  115 bits (290), Expect = 2e-31
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 22/227 (9%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KI + GATG +G RI+E+   +G  V A VR+  K   T    +  + I++ D+ + +  
Sbjct: 2   KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT----HKDINILQKDIFDLTLS 57

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI-LVN 186
                  D   VV A G  P        +       +L+         R +++     + 
Sbjct: 58  DLS----DQNVVVDAYGISPDEA-----EKHVTSLDHLISVLNGTVSPRLLVVGGAASLQ 108

Query: 187 GAAMGQILNPAYIF---LNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNE-PPTGNI 242
               G  L  +               AK        ++  ++T I P  +      TG+ 
Sbjct: 109 IDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGERTGDY 168

Query: 243 IMETEDTLYEG----TISRDQVAEVAVEALLHPESSYKVVEIISRVD 285
            +  +  L+       IS +  A   ++ +  P    +   +  +++
Sbjct: 169 QIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLNEHFTVAGKLE 215

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score =  112 bits (282), Expect = 4e-30
 Identities = 45/223 (20%), Positives = 78/223 (34%), Gaps = 18/223 (8%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           KI V GATG +G  IV +   +G  V A VRD  KA      D     +           
Sbjct: 2   KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA-----ADRLGATVATLVKEPLVLT 56

Query: 128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS--ILV 185
            ++    D  AVV A     G        +      +LV   R        ++ S  + +
Sbjct: 57  EADLDSVD--AVVDALSVPWGSG---RGYLHLDFATHLVSLLRNSDTLAVFILGSASLAM 111

Query: 186 NGAAMGQILN-PAYIFLNVFGLTLIAKLQAEQYIRK-SGINYTIIRPGGLRNEPPTGNII 243
            GA    IL+ P       +    + +    Q+++  + +N+  I P       P  + +
Sbjct: 112 PGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSEAFPSGPATSYV 171

Query: 244 METEDTLY----EGTISRDQVAEVAVEALLHPESSYKVVEIIS 282
              +  L     +  I+   +A   ++ L HP +    + +  
Sbjct: 172 AGKDTLLVGEDGQSHITTGNMALAILDQLEHPTAIRDRIVVRD 214

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313

 Score = 96.5 bits (240), Expect = 3e-23
 Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 34/234 (14%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-----DLDKAKTTLSKDNPSLQIVKA 119
           K+ ++ + G TG  GKRIV   ++ G       R     ++DK +  L       ++++A
Sbjct: 3   KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 62

Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
            + +    L +A+    + V+ A                    + LVEA ++ G  +  L
Sbjct: 63  SLDDHQR-LVDAL-KQVDVVISALA-------GGVLSHHILEQLKLVEAIKEAGNIKRFL 113

Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG-------G 232
            S   ++   M   L P  I           K +  + I  + I YT +          G
Sbjct: 114 PSEFGMDPDIMEHALQPGSITFI-------DKRKVRRAIEAASIPYTYVSSNMFAGYFAG 166

Query: 233 LRNEPPTGNIIMETEDTLYEG------TISRDQVAEVAVEALLHPESSYKVVEI 280
              +     +    +  +Y         +  D V    ++++  P++  K + I
Sbjct: 167 SLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYI 220

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 96.6 bits (241), Expect = 3e-23
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 24/179 (13%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK 127
           K  V GATG  G      + A G  +    R   + +          +   A++ + +  
Sbjct: 15  KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL---AYLEPECRVAEMLDHAG- 70

Query: 128 LSEAIGDDSEAVV-CA--TGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
           L  A+    + V+  A     +P  W            T     AC +  V R + + S 
Sbjct: 71  LERAL-RGLDGVIFSAGYYPSRPRRWQEE--VASALGQTNPFYAACLQARVPRILYVGSA 127

Query: 184 LVNGAAMGQI-------LNPAYIFLNVFGLTLIAKLQAEQYIR---KSGINYTIIRPGG 232
                    +        +      + + L    K   ++  R   ++G+   I  PG 
Sbjct: 128 YAMPRHPQGLPGHEGLFYDSLPSGKSSYVLC---KWALDEQAREQARNGLPVVIGIPGM 183

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299

 Score = 92.1 bits (229), Expect = 7e-22
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 29/219 (13%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           +K + V G TG+ G  +   LL  G F V+   R+  K      +     ++V+ D  + 
Sbjct: 5   KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRL-QGAEVVQGDQDDQ 63

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              +  A+ + + A    T     W+  +  +    G   L +  R+ G++  +      
Sbjct: 64  VI-MELAL-NGAYATFIVT---NYWESCSQEQEVKQGK-LLADLARRLGLHYVVYSGLEN 117

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG-LRNEPPTGNII 243
           +     G++    +            K + E+Y R  G+  T +R      N        
Sbjct: 118 IKKLTAGRLAAAHFD----------GKGEVEEYFRDIGVPMTSVRLPCYFENLLSHFLPQ 167

Query: 244 METEDTLYEGT----------ISRDQVAEVAVEALLHPE 272
              +   Y  +          +S   +  V +  L  PE
Sbjct: 168 KAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPE 206

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308

 Score = 91.5 bits (227), Expect = 1e-21
 Identities = 40/232 (17%), Positives = 80/232 (34%), Gaps = 39/232 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR------DLDKAKTTLSKDNPSLQIVKAD 120
            +I + GATG  G+ + +  L  G      VR      + +KA+   S       IV   
Sbjct: 5   SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 64

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           + +  A L EA+  + + V+   G            +     VN+++A ++ G  +    
Sbjct: 65  IDD-HASLVEAV-KNVDVVISTVGS-----------LQIESQVNIIKAIKEVGTVKRFFP 111

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG-----LRN 235
           S    +   +  +     +F          K +  + I   GI YT +         LR+
Sbjct: 112 SEFGNDVDNVHAVEPAKSVF--------EVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRS 163

Query: 236 EPPTGNIIMETEDTLYEG-------TISRDQVAEVAVEALLHPESSYKVVEI 280
               G      +  +  G        +  + +    ++A+  P +  K + +
Sbjct: 164 LAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYL 215

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352

 Score = 91.8 bits (228), Expect = 2e-21
 Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 37/238 (15%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT 122
           + ++K I V GATG  G  ++    A G  V+A V  L        +  P++ + +  + 
Sbjct: 2   AQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLL 61

Query: 123 EGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS 182
                +     + +      T  Q G ++            +L +A ++ G  +  + SS
Sbjct: 62  NNVPLMDTLF-EGAHLAFINTTSQAGDEIAI--------GKDLADAAKRAGTIQHYIYSS 112

Query: 183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG----------- 231
             +   ++        ++          K   E Y+R+ G+  T +  G           
Sbjct: 113 --MPDHSLYGPWPAVPMW--------APKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPY 162

Query: 232 --GLRNEPPTGNIIMET---EDTLYEGTISRDQVAEVAVEALLHPESSY--KVVEIIS 282
                   P G          D       +   V    ++        +    + +  
Sbjct: 163 PLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTF 220

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 89.5 bits (222), Expect = 3e-21
 Identities = 44/252 (17%), Positives = 90/252 (35%), Gaps = 38/252 (15%)

Query: 49  MGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTT 106
           M ++E   +  E+  ++ K +F+ GA+G +G+ +++++L +G    V    R   +  T 
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGR---RKLTF 57

Query: 107 LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG---FQPGWDLFAPWKVDNFGTV 163
             +   ++     D  +     S   G D     C  G    + G + F   +VD    +
Sbjct: 58  DEEAYKNVNQEVVDFEKLDDYASAFQGHD--VGFCCLGTTRGKAGAEGF--VRVDRDYVL 113

Query: 164 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI 223
              E  +  G   F L+SS   + ++    L                K + E  + +   
Sbjct: 114 KSAELAKAGGCKHFNLLSSKGADKSSNFLYLQ--------------VKGEVEAKVEELKF 159

Query: 224 -NYTIIRPG---GLRNEPPTGNIIMETEDTLYEGTISR------DQVAEVAVEALLHPES 273
             Y++ RPG     R E   G  ++         + +         V    +  ++ P  
Sbjct: 160 DRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD 219

Query: 274 SYKVVEIISRVD 285
             K +E++    
Sbjct: 220 --KQMELLENKA 229

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 88.9 bits (221), Expect = 8e-21
 Identities = 42/226 (18%), Positives = 73/226 (32%), Gaps = 43/226 (19%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            I + GATG  G  I  Q +A        GVR+++K           + + + D      
Sbjct: 2   NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGK---VSVRQLDYFN-QE 57

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTV----NLVEACRKRGVNRFILISS 182
            + EA     + VV                  +F  +    NLV A ++ GV   I I  
Sbjct: 58  SMVEAF-KGMDTVV----------FIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106

Query: 183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG-LRNEPP--- 238
                       + +                A + +  SGI+YT +R    +    P   
Sbjct: 107 Y---ADQHNNPFHMS-----------PYFGYASRLLSTSGIDYTYVRMAMYMDPLKPYLP 152

Query: 239 ----TGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEI 280
                  +I    D      I+R+ +A   +  + +P++  K   +
Sbjct: 153 ELMNMHKLIYPAGDGR-INYITRNDIARGVIAIIKNPDTWGKRYLL 197

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307

 Score = 85.7 bits (212), Expect = 2e-19
 Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 42/253 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-------DLDKAKTTLSKDNPSLQIVKA 119
            KI + G TG+ G+ IV   +  G    A VR          K +   +  +  + +++ 
Sbjct: 3   NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEG 62

Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
           D+ +    L +AI    + V+CA G     +            V +++A ++ G  +   
Sbjct: 63  DINDHET-LVKAI-KQVDIVICAAGR-LLIE----------DQVKIIKAIKEAGNVKKFF 109

Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG-----LR 234
            S   ++        +       VF      K    + I   G+ YT +         LR
Sbjct: 110 PSEFGLDVDRH----DAVEPVRQVFE----EKASIRRVIEAEGVPYTYLCCHAFTGYFLR 161

Query: 235 NEPPTGNIIMETEDTLYEG-------TISRDQVAEVAVEALLHPESSYKVVEIISRVDAP 287
           N           +  +  G        ++   V    + A   P +  K V I  R+   
Sbjct: 162 NLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHI--RLPKN 219

Query: 288 KRSYEDLFGSIKQ 300
             +  ++    ++
Sbjct: 220 YLTQNEVIALWEK 232

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score = 85.1 bits (210), Expect = 4e-19
 Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 37/231 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR----DLDKAKTTLSKDNPSLQIVKADVT 122
            ++ +AGATG  G+ +    L          R       KAK   + ++    IV   + 
Sbjct: 11  GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLIN 70

Query: 123 EGSAKLSEAI-GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 181
           E  A + + +   + + VV   G +                + LV+A +  G  +  L S
Sbjct: 71  EQEA-MEKILKEHEIDIVVSTVGGE-----------SILDQIALVKAMKAVGTIKRFLPS 118

Query: 182 SILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG-----GLRNE 236
               +        +P    LN++      K +  Q + +SGI +T I           N 
Sbjct: 119 EFGHDVNRA----DPVEPGLNMYR----EKRRVRQLVEESGIPFTYICCNSIASWPYYNN 170

Query: 237 PPTGNIIMETEDTLYEGT-------ISRDQVAEVAVEALLHPESSYKVVEI 280
                ++  T+     G        ++   + +  ++ +    +  K V  
Sbjct: 171 IHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHF 221

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287

 Score = 83.9 bits (208), Expect = 5e-19
 Identities = 47/227 (20%), Positives = 81/227 (35%), Gaps = 46/227 (20%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           I V GATG  G  +++ LL K  A  + A VR+++KA T   +    +++   D  +   
Sbjct: 3   IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQG---VEVRHGDYNQ-PE 58

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTV----NLVEACRKRGVNRFILISS 182
            L +A       ++            +    DN   +    N+V+A R  GV        
Sbjct: 59  SLQKAF-AGVSKLL----------FISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGY 107

Query: 183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG---------GL 233
                + +   L   +             L  E  IR + I YT +R           GL
Sbjct: 108 AFAEESIIP--LAHVH-------------LATEYAIRTTNIPYTFLRNALYTDFFVNEGL 152

Query: 234 RNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEI 280
           R    +G I+      +   +++R+++A  A   L       K   +
Sbjct: 153 RASTESGAIVTNAGSGI-VNSVTRNELALAAATVLTEEGHENKTYNL 198

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318

 Score = 84.2 bits (208), Expect = 6e-19
 Identities = 41/244 (16%), Positives = 73/244 (29%), Gaps = 33/244 (13%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLSKDNPSLQIVKADVTEGS 125
            KI + G TG  G  +V+  L  G       R +  K        +    IVK ++ E  
Sbjct: 12  SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE-H 70

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            KL E +    + V+ A  F    D              ++EA +  G  +  L S   V
Sbjct: 71  EKLVELM-KKVDVVISALAFPQILD-----------QFKILEAIKVAGNIKRFLPSDFGV 118

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRN--EPPTGNII 243
               +          L  F   +  K    + I ++ I YT +      +          
Sbjct: 119 EEDRINA--------LPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPY 170

Query: 244 METEDTLYEG-------TISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFG 296
              ++    G             +    ++    P +  +VV    R      +  +L  
Sbjct: 171 DPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIY--RPSTNIITQLELIS 228

Query: 297 SIKQ 300
             ++
Sbjct: 229 RWEK 232

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 39/222 (17%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           I + GATG  G  ++E L+    A  + A VR+  KA+   ++    + + +AD  +  A
Sbjct: 2   IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQG---ITVRQADYGD-EA 57

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
            L+ A+    E ++  +  + G               N++ A +  GV      S +  +
Sbjct: 58  ALTSAL-QGVEKLLLISSSEVGQRAPQ--------HRNVINAAKAAGVKFIAYTSLLHAD 108

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGG-LRNEPP------- 238
            + +G                    ++ E+ +  SGI YT++R G    N          
Sbjct: 109 TSPLG---------------LADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALE 153

Query: 239 TGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEI 280
            G  I    D     + +R   A  A   +       KV E+
Sbjct: 154 HGVFIGAAGDGK-IASATRADYAAAAARVISEAGHEGKVYEL 194

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 77.0 bits (190), Expect = 5e-17
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 36/226 (15%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVT 122
             K++ +AGATG +G+ +++++L++     V A  R           ++P L      + 
Sbjct: 4   TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA-------LAEHPRLDNPVGPLA 56

Query: 123 EGSAKLSEAIGDDSEAVVCATG--FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           E    L   +    +   C  G   +      A   VD    + + +   + G   ++++
Sbjct: 57  E----LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVV 112

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI-NYTIIRPG---GLRNE 236
           S++  +  +        Y            K + EQ +++ G    TI RP    G R E
Sbjct: 113 SALGADAKSSI-----FY---------NRVKGELEQALQEQGWPQLTIARPSLLFGPREE 158

Query: 237 PPTGNIIMETEDTLYEGT---ISRDQVAEVAVEALLHPESSYKVVE 279
                I+      +  G    I    +A       L      + VE
Sbjct: 159 FRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEGKGVRFVE 204

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321

 Score = 75.0 bits (184), Expect = 1e-15
 Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 39/232 (16%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL------DKAKTTLSKDNPSLQIVKAD 120
           +KI + G TG  GK +V   L+         R L         +      +  + I++ +
Sbjct: 5   EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI 180
           + E   K+   +    + V+ A  F                 ++++ A +  G  +  L 
Sbjct: 65  MEE-HEKMVSVL-KQVDIVISALPF-----------PMISSQIHIINAIKAAGNIKRFLP 111

Query: 181 SSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG-----GLRN 235
           S        +          L  F   L  K    + I  + + YT +         +  
Sbjct: 112 SDFGCEEDRIKP--------LPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNY 163

Query: 236 EPPTGNIIMETED-TLYEG------TISRDQVAEVAVEALLHPESSYKVVEI 280
                      +D  +Y            + +A+  ++    P    ++V  
Sbjct: 164 LLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIY 215

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 13/169 (7%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
              KI +AG  G  G  +  +L A+G  V    R               +Q + ADVT  
Sbjct: 2   SLSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPA-------GVQTLIADVTR- 52

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              L+  +    E +V        +           G  N + A     +     +SS  
Sbjct: 53  PDTLASIVHLRPEILVYCVAA-SEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTG 111

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
           V G  + + L+           +    L+AE  +     + TI+R  G+
Sbjct: 112 VYGQEVEEWLDEDTP-PIAKDFSGKRMLEAEALLA--AYSSTILRFSGI 157

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 44/233 (18%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           K++ V GA G  G+ + E+L      ++  + DL      L    P+ + V+ D+ + +A
Sbjct: 4   KRLLVTGAAGQLGRVMRERLAPMAEILR--LADLS----PLDPAGPNEECVQCDLADANA 57

Query: 127 KLSEAIGDDSEAVV--CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
            ++  +    + +V       +  ++     + +  G  NL EA R  G  R +  SS  
Sbjct: 58  -VNAMV-AGCDGIVHLGGISVEKPFE--QILQGNIIGLYNLYEAARAHGQPRIVFASSN- 112

Query: 185 VNGAAMGQILNPAYIF---------LNVFGLTLIAKLQAEQYIR----KSGINYTIIRPG 231
                +G    P               ++G++   K   E   R    K G    ++R  
Sbjct: 113 ---HTIGY--YPQTERLGPDVPARPDGLYGVS---KCFGENLARMYFDKFGQETALVRI- 163

Query: 232 GLRNEPPTGNIIMETEDTLYEGT-ISRDQVAEVAVEALLHPESSYKVVEIISR 283
                   G+   E  +     T  S D    +       P     VV   S 
Sbjct: 164 --------GSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASA 208

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 44/228 (19%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            ++ V GA G  G  I   L      V    R  D             +IV  D+ +  A
Sbjct: 3   NRLLVTGAAGGVGSAIRPHLGTLAHEV----RLSDIVDL--GAAEAHEEIVACDLADAQA 56

Query: 127 KLSEAIGDDSEAVV--CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
            + + +  D + ++       +  W+     + +  G  NL EA R  G  R +  SS  
Sbjct: 57  -VHDLV-KDCDGIIHLGGVSVERPWN--DILQANIIGAYNLYEAARNLGKPRIVFASS-- 110

Query: 185 VNGAAMGQILNPAYIF---------LNVFGLTLIAKLQAEQYIR----KSGINYTIIRPG 231
                +G    P              +++GL+   K   E        K  I    IR  
Sbjct: 111 --NHTIG--YYPRTTRIDTEVPRRPDSLYGLS---KCFGEDLASLYYHKFDIETLNIRI- 162

Query: 232 GLRNEPPTGNIIMETED-TLYEGTISRDQVAEVAVEALLHPESSYKVV 278
                   G+   + +D  +    +S D    +   A + P+    VV
Sbjct: 163 --------GSCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVV 202

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 28/187 (14%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           KK+F+ G  G  G  I E LL +G  V  G+ +    +    KD+P+L  V+  + +  A
Sbjct: 22  KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKDHPNLTFVEGSIAD-HA 79

Query: 127 KLSEAIGDDSEAVVC---ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
            +++ IGD     V    A+   P  D +     +  G  N+V+A +K  V RF+   + 
Sbjct: 80  LVNQLIGDLQPDAVVHTAASYKDPD-DWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQT- 137

Query: 184 LVNGAAMGQILNPAYIFLNV----------FGLTLIAKLQAEQYIRKSGINYTIIRPG-- 231
                  G  + P    + +          + ++   K   E Y+  SG+++   R    
Sbjct: 138 ---ALCYG--VKPIQQPVRLDHPRNPANSSYAIS---KSANEDYLEYSGLDFVTFRLANV 189

Query: 232 -GLRNEP 237
            G RN  
Sbjct: 190 VGPRNVS 196

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 53/256 (20%), Positives = 94/256 (36%), Gaps = 57/256 (22%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKA 119
           + + + V GA+G  G  +V +LL +G+ V+A VRD    K       L K    L + KA
Sbjct: 4   QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKA 63

Query: 120 DVT-EGSAKLSEAIGDDSEAVV-CATGFQ-----PGWDLFAPWKVDNFGTVNLVEACRKR 172
           D+  EGS    EAI      V   AT        P  ++  P  ++  G + ++++C   
Sbjct: 64  DLADEGS--FDEAI-KGCTGVFHVATPMDFESKDPENEVIKP-TIE--GMLGIMKSCAAA 117

Query: 173 G-VNRFILISSILVNGAAMGQILNPAYI----------FLNVFGLTL----IAKLQAEQ- 216
             V R +  SS       +    +   +          F     +T     ++K  AEQ 
Sbjct: 118 KTVRRLVFTSSA----GTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQA 173

Query: 217 ---YIRKSGINYTIIRPGG-----LRNEPPTGNII----METEDTLYEGTIS------RD 258
              Y +++ I++  I P       + +  P   I     +   +  Y            D
Sbjct: 174 AWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDD 233

Query: 259 QVAEVAVEALLHPESS 274
            +    +    +P++ 
Sbjct: 234 -LCNAHIYLFENPKAE 248

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 31/189 (16%)

Query: 69  IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKL 128
           I V G++G  G  +V  L  K         D+      + +D   ++ +  DV+     +
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVIASDI------VQRDTGGIKFITLDVSNRDE-I 54

Query: 129 SEAIGDDSE-------AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS 181
             A+   S         ++ A G +   D    +KV+  GT N++EA ++  V + ++ S
Sbjct: 55  DRAVEKYSIDAIFHLAGILSAKGEK---DPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111

Query: 182 SILVNGAAMGQ-------ILNPAYIFLNVFGLT-LIAKLQAEQYIRKSGINYTIIRPGGL 233
           +I V G    +       I  P      +FG+T + A+L  + Y  K G++   +R  G+
Sbjct: 112 TIGVFGPETPKNKVPSITITRP----RTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167

Query: 234 --RNEPPTG 240
                 PT 
Sbjct: 168 ISYKAEPTA 176

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 43/130 (33%), Positives = 58/130 (44%), Gaps = 18/130 (13%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPS-LQIVKADV 121
           +K   V G TG     +V+ LL KG+AV   VRD D  K     L       L+I +AD+
Sbjct: 9   KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADL 68

Query: 122 T-EGSAKLSEAIGDDSEAVV-CATGFQ-----PGWDLFAPWKVDNFGTVNLVEACRK-RG 173
           T E S      I    + V   AT        P  D+  P  +   G VN+++AC + + 
Sbjct: 69  TDELS--FEAPI-AGCDFVFHVATPVHFASEDPENDMIKP-AIQ--GVVNVMKACTRAKS 122

Query: 174 VNRFILISSI 183
           V R IL SS 
Sbjct: 123 VKRVILTSSA 132

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 51/255 (20%), Positives = 85/255 (33%), Gaps = 59/255 (23%)

Query: 60  ENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD---LDKAKT-TLSKDNPSLQ 115
           EN+  +   I + GA G  G+++ ++L+  G      V     +D  +    +  + ++ 
Sbjct: 8   ENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVD 67

Query: 116 IVKADVTEGSAKLSEAIGDDSEAVVC------ATG---FQPGWDLFAPWKVDNF-GTVNL 165
              AD++    +  + +    + +              F  G+ +       N  GT  L
Sbjct: 68  ARAADLSA-PGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRI-------NLDGTRYL 119

Query: 166 VEACRKRGVN-----RFILISSILVNGAAMGQ------ILNPAYIFLNVFGLTLIAKLQA 214
            +A R          R +  SSI V GA +           P    L  +G     K   
Sbjct: 120 FDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTP----LTSYGTQ---KAIC 172

Query: 215 EQYI----RKSGINYTIIR-PG-----GLRNEPPTG---NIIMET----EDTLYEGTISR 257
           E  +    R+   +   IR P      G  N   +G   NI+ E     E  L      R
Sbjct: 173 ELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIR 232

Query: 258 DQVAEV--AVEALLH 270
              A    AV  L+H
Sbjct: 233 HWHASPRSAVGFLIH 247

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLSKDNPS--LQIVKA 119
           +   + V GA G     +VEQLL  G+ V+   R   K    +       P      V  
Sbjct: 10  EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69

Query: 120 DVTEGSAKLSEAIGDDSEAVV-CATGFQ---PGWDLFAPWKVDNFGTVNLVEACRKRG-V 174
           D+ +  A   E I   +  V   A+         ++  P  +   GT+N + A      V
Sbjct: 70  DMLKQGA-YDEVI-KGAAGVAHIASVVSFSNKYDEVVTP-AIG--GTLNALRAAAATPSV 124

Query: 175 NRFILISSI 183
            RF+L SS 
Sbjct: 125 KRFVLTSST 133

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 46/254 (18%), Positives = 88/254 (34%), Gaps = 57/254 (22%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK------TTLSKDNPSLQIVKAD 120
            ++ V G TG  G  I++ LL  G++V   +R   + K      T L   +  L    AD
Sbjct: 2   GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNAD 61

Query: 121 VT-EGSAKLSEAIGDDSEAVV-CATGFQ-----PGWDLFAPWKVDNFGTVNLVEACRKRG 173
           ++   S   + AI +    +   A+        P   +     VD  G + +++AC    
Sbjct: 62  LSNPDS--FAAAI-EGCVGIFHTASPIDFAVSEPEEIVTKR-TVD--GALGILKACVNSK 115

Query: 174 -VNRFILISSILVNGAAMGQILNPAYIF-------------LNVFGLT-LIAKLQAEQ-- 216
            V RFI  SS     +A+        +              +  FG    ++K  AE+  
Sbjct: 116 TVKRFIYTSSG----SAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAV 171

Query: 217 --YIRKSGINYTIIRPGG-----LRNEPPTGN-----IIMETEDTLYEGTIS----RDQV 260
             +  ++GI+   +         +  + P        +++  ++ +           D V
Sbjct: 172 LEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDD-V 230

Query: 261 AEVAVEALLHPESS 274
           A   +  L +    
Sbjct: 231 ARAHIYLLENSVPG 244

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 27/195 (13%)

Query: 49  MGKSEITEEAEENVSVKQK--KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT 106
           MG S         +  +    +I + G  G  G  ++E  L +G  +   + +    K  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEI-LVIDNFATGKRE 59

Query: 107 LSKDNPSLQIVKADVTEGSAKLSEAIGDDS-EAVV--CATGFQPGWDLFAPWKVDNFGTV 163
           +      L +++  VT+ +  L  A        VV   A   +   D       +  G++
Sbjct: 60  VLPPVAGLSVIEGSVTD-AGLLERAFDSFKPTHVVHSAAAY-KDPDDWAEDAATNVQGSI 117

Query: 164 NLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF---------LNVFGLTLIAKLQA 214
           N+ +A  K GV R +   + L  G        PA +             +G++   K   
Sbjct: 118 NVAKAASKAGVKRLLNFQTALCYG-------RPATVPIPIDSPTAPFTSYGIS---KTAG 167

Query: 215 EQYIRKSGINYTIIR 229
           E ++  S +    +R
Sbjct: 168 EAFLMMSDVPVVSLR 182

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 37/214 (17%)

Query: 42  HSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL- 100
           H  +   MG     EE  + +  + K   + G  G  G  ++E LL     V  G+ +  
Sbjct: 3   HHHHHGSMGMMSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKV-VGLDNFA 61

Query: 101 --------DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV---CATGFQPGW 149
                   +       K   + + ++ D+               + V+            
Sbjct: 62  TGHQRNLDEVRSLVSEKQWSNFKFIQGDIRN--LDDCNNACAGVDYVLHQAALGSVPRSI 119

Query: 150 DLFAPW---KVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG------QILNPAYIF 200
           +   P      +  G +N++ A R   V  F   +S    G   G       I  P    
Sbjct: 120 N--DPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKP---- 173

Query: 201 LNVFGLTLIAKLQAEQYI----RKSGINYTIIRP 230
           L+ + +T   K   E Y     R  G +   +R 
Sbjct: 174 LSPYAVT---KYVNELYADVFSRCYGFSTIGLRY 204

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 51/205 (24%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            KI V G TG  G+ +VE +   G         L ++    +K     +   +D T    
Sbjct: 3   LKIAVTGGTGFLGQYVVESIKNDGNTPII----LTRSIG--NKAINDYEYRVSDYT--LE 54

Query: 127 KLSEAIGDDSEAVV---CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI 183
            L   + +D +AVV      G Q     F     +   T NL +AC +  ++  +  S+I
Sbjct: 55  DLINQL-NDVDAVVHLAATRGSQGKISEF---HDNEILTQNLYDACYENNISNIVYASTI 110

Query: 184 LVNGAAMG------QILNPAYIFLNVFGLTLIAKLQAEQYI----RKSGINYTIIR---- 229
                         ++  P      ++G++   KL  E       RK G+    +R    
Sbjct: 111 SAYSDETSLPWNEKELPLP----DLMYGVS---KLACEHIGNIYSRKKGLCIKNLRFAHL 163

Query: 230 ------PGG---------LRNEPPT 239
                                E  T
Sbjct: 164 YGFNEKNNYMINRFFRQAFHGEQLT 188

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 40/205 (19%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 43  SINSTKMGKSEITEEAEENV-SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD 101
           + N T  G     E   E     +  KI + GA G     I  +L  +G  V        
Sbjct: 5   TTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVI-ASDWKK 63

Query: 102 KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV---CATGFQPGWDLFAPW--- 155
               T         +V   V E   K++E +    + V       G   G+         
Sbjct: 64  NEHMTEDMFCDEFHLVDLRVMENCLKVTEGV----DHVFNLAADMG-GMGFIQSNHSVIM 118

Query: 156 KVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIF---LNVFGLTL---I 209
             +   + N++EA R  G+ RF   SS  +             +               +
Sbjct: 119 YNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGL 178

Query: 210 AKLQAE----QYIRKSGINYTIIRP 230
            KL  E     Y +  GI   I R 
Sbjct: 179 EKLATEELCKHYNKDFGIECRIGRF 203

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 48/189 (25%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGS 125
           ++ V G  G  G  IVE LLA+G  V A + +L     T  ++N    +   + D+ +  
Sbjct: 2   RVLVTGGAGFIGSHIVEDLLARGLEV-AVLDNL----ATGKRENVPKGVPFFRVDLRD-K 55

Query: 126 AKLSEAIGDDS-EAVV--CATGF------QPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 176
             +  A  +     V    A          P  D    ++V+  G +NL+EACR+ GV +
Sbjct: 56  EGVERAFREFRPTHVSHQAAQASVKVSVEDPVLD----FEVNLLGGLNLLEACRQYGVEK 111

Query: 177 FILISSILVNGAAM-GQI-----------LNPAYIFLNVFGLTLIAKLQAEQYIR----K 220
            +  S+    G A+ G++             P     + +  +   K   E Y+      
Sbjct: 112 LVFAST----GGAIYGEVPEGERAEETWPPRP----KSPYAAS---KAAFEHYLSVYGQS 160

Query: 221 SGINYTIIR 229
            G+ +  +R
Sbjct: 161 YGLKWVSLR 169

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 49.3 bits (117), Expect = 6e-07
 Identities = 13/122 (10%), Positives = 35/122 (28%), Gaps = 3/122 (2%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
               + G TG  G  + E L           V  + +       ++  +  V+ D+++  
Sbjct: 2   SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPD 61

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK--RGVNRFILISSI 183
              ++         V    +          + ++    N+++A       +    L +  
Sbjct: 62  DSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGR 121

Query: 184 LV 185
             
Sbjct: 122 KH 123

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 50/227 (22%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-------KDNPSLQ 115
            +    + V G  G  G  +V++LL  G      V  +D     L         D+P+++
Sbjct: 29  KLANTNVMVVGGAGFVGSNLVKRLLELGVNQ---VHVVDN----LLSAEKINVPDHPAVR 81

Query: 116 IVKADVTEGSAKLSEAIGDDSEAVV---CATG-----FQPGWDLFAPWKVDNFGTVNLVE 167
             +  +T+    L  ++ D+ + V       G       P  D     + +   T+ L E
Sbjct: 82  FSETSITD--DALLASLQDEYDYVFHLATYHGNQSSIHDPLADH----ENNTLTTLKLYE 135

Query: 168 ACRK-RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL---------IAKLQAEQY 217
             +  + + + +  ++    G ++ +             +           ++K+  E Y
Sbjct: 136 RLKHFKRLKKVVYSAA----GCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFY 191

Query: 218 I----RKSGINYTIIRPG---GLRNEPPTGNIIMETEDTLYEGTISR 257
                ++  +     R     G       G        T++      
Sbjct: 192 SVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTP-ATVWRNVTPT 237

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 26/129 (20%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKA------GVRDLDKAKTTLSKDNPSLQIVK 118
            + +I + G  G  G  +   L+A G  V              +       + P L++ +
Sbjct: 6   LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKF-LEKPVLELEE 64

Query: 119 ADVTEGSAKLSEAIGDDSEAVV---CATGFQPGWDLFAPWK-VDNF-GTVNLVEACRKRG 173
            D++            D   V            +    P   +DN     +L+  C   G
Sbjct: 65  RDLS------------DVRLVYHLASHKSVPRSFK--QPLDYLDNVDSGRHLLALCTSVG 110

Query: 174 VNRFILISS 182
           V + ++ S+
Sbjct: 111 VPKVVVGST 119

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 55/214 (25%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV----------------------RDLDK 102
           + + + + GATG  G+ +V +LL +   V   +                       D + 
Sbjct: 72  ELRTVLLTGATGFLGRYLVLELLRRL-DVDGRLICLVRAESDEDARRRLEKTFDSGDPEL 130

Query: 103 AKTTLSKDNPSLQIVKADVTE---GSAKLSEA----IGDDSEAVV-CA--TGFQPGWDLF 152
            +         L++V  D +E   G   L +     + +  + +V  A      P  +LF
Sbjct: 131 LRHFKELAADRLEVVAGDKSEPDLG---LDQPMWRRLAETVDLIVDSAAMVNAFPYHELF 187

Query: 153 APWKVDNF-GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI-- 209
            P    N  GT  L+       +  F  +S+  V  A              +     +  
Sbjct: 188 GP----NVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDG 243

Query: 210 --------AKLQAEQYIR----KSGINYTIIRPG 231
                   +K   E  +R       +   + R G
Sbjct: 244 GWAGGYGTSKWAGEVLLREANDLCALPVAVFRCG 277

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 20/99 (20%)

Query: 155 WKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ-------ILNPAYIFLNVFGLT 207
           W ++     +++   + + + +    SSI V G    +       I+ P      V+G++
Sbjct: 91  WDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEP----STVYGIS 146

Query: 208 LIAKLQAEQYI----RKSGINYTIIRPGGL--RNEPPTG 240
              K   E++        G++   IR  GL   + PP G
Sbjct: 147 ---KQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGG 182

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 44/184 (23%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGS 125
           +I V G  G  G  +V++L+  G+ V   V +L    ++  ++   PS ++   D+ +  
Sbjct: 2   RIVVTGGAGFIGSHLVDKLVELGYEV-VVVDNL----SSGRREFVNPSAELHVRDLKD-- 54

Query: 126 AKLSEAIGDDS------EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL 179
                 I  D          V  +  +P       +  +   T N++E  R+ GV   + 
Sbjct: 55  YSWGAGIKGDVVFHFAANPEVRLSTTEPIVH----FNENVVATFNVLEWARQTGVRTVVF 110

Query: 180 ISSILVNGAAMG----------QILNPAYIFLNVFGLTLIAKLQAEQYI----RKSGINY 225
            SS        G          +   P    ++V+G     K   E       R  G+  
Sbjct: 111 ASS----STVYGDADVIPTPEEEPYKP----ISVYGAA---KAAGEVMCATYARLFGVRC 159

Query: 226 TIIR 229
             +R
Sbjct: 160 LAVR 163

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 63  SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT 122
           S+K KK+ + G  G  G  + +++L        G+ D+   +      +  +   + D+T
Sbjct: 21  SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGM-DMQTDRLGDLVKHERMHFFEGDIT 79

Query: 123 EGSAKLSEAIGDDSEAV---VCATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVNR 176
             + +  E      + +   V      P   +  P   +++D    + +V +  K G   
Sbjct: 80  I-NKEWVEYHVKKCDVILPLVAIAT--PATYVKQPLRVFELDFEANLPIVRSAVKYGK-H 135

Query: 177 FILISSILVNGAAMGQILNP---AYIFLNVFGLTLI---AKLQAEQYI---RKSGINYTI 227
            +  S+  V G    +  +P   A  +  +     I   +K   ++ I      G+N+T+
Sbjct: 136 LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFTL 195

Query: 228 IRP 230
            RP
Sbjct: 196 FRP 198

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 20/168 (11%), Positives = 48/168 (28%), Gaps = 18/168 (10%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS 125
              +   G  G + + +   L  +G+ +    R+ D+          +++   A+     
Sbjct: 5   TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQM--------EAIRASGAEPLLWP 55

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV 185
            +      D    ++ +T    G D            +    A R         +S+  V
Sbjct: 56  GEEPSL--DGVTHLLISTAPDSGGDPVL-------AALGDQIAARAAQFRWVGYLSTTAV 106

Query: 186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGL 233
            G   G  ++                +  +Q+     +   + R  G+
Sbjct: 107 YGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPNLPLHVFRLAGI 154

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 28/146 (19%)

Query: 56  EEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL---------DKAKTT 106
           EE  + +    K   + G  G  G  ++E+LL     V  G+ +          +     
Sbjct: 15  EEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVI-GLDNFSTGHQYNLDEVKTLV 73

Query: 107 LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV-CATGFQPGWDLFAPWKVDN------ 159
            ++       ++ D+ + +    + +    + V+  A           P  + +      
Sbjct: 74  STEQWSRFCFIEGDIRDLTT-CEQVM-KGVDHVLHQAA--LGS----VPRSIVDPITTNA 125

Query: 160 ---FGTVNLVEACRKRGVNRFILISS 182
               G +N++ A +   V  F   +S
Sbjct: 126 TNITGFLNILHAAKNAQVQSFTYAAS 151

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 42/266 (15%), Positives = 80/266 (30%), Gaps = 75/266 (28%)

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--------------KAKTT 106
           +  ++ + I + G  G  G  +           K  V  LD                   
Sbjct: 5   DDELENQTILITGGAGFVGSNLAFHFQENHPKAK--VVVLDKFRSNTLFSNNRPSSLGHF 62

Query: 107 LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV----CA-TGFQPGWDLFAPWKVDNFG 161
            +      +++ AD+      L        + +      + T      +     K +   
Sbjct: 63  KNLIGFKGEVIAADINN-PLDLRRLEKLHFDYLFHQAAVSDT---TMLNQELVMKTNYQA 118

Query: 162 TVNLVEACRKRGVNRFILISSILVNGAAM----------GQILNPAYIFLNVFGLTLIAK 211
            +NL+E  R +   + I  SS     A +          G+  +P     NV+G +   K
Sbjct: 119 FLNLLEIARSKKA-KVIYASS-----AGVYGNTKAPNVVGKNESP----ENVYGFS---K 165

Query: 212 LQAEQYIRKSGINYTIIRPGGLR-------NEPPTG----------NIIMETED-TLYE- 252
           L  ++++     +   +   GLR        E                 M  ++  L+E 
Sbjct: 166 LCMDEFVLSHSNDNVQV---GLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEF 222

Query: 253 GTISRDQ-----VAEVAVEALLHPES 273
           G   RD      V +  V+A+   +S
Sbjct: 223 GEQLRDFVYIEDVIQANVKAMKAQKS 248

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score = 45.2 bits (108), Expect = 9e-06
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 25/83 (30%)

Query: 161 GTVNLVEACRKRGVNRFILISSILVNGAAMG----------QILNPAYIFLNVFGLTLIA 210
            T  L+EA RK GV+R +  S+        G             +P    ++++G +   
Sbjct: 93  ATYRLLEAMRKAGVSRIVFTST----STVYGEAKVIPTPEDYPTHP----ISLYGAS--- 141

Query: 211 KLQAEQYIRKS----GINYTIIR 229
           KL  E  I        +   I R
Sbjct: 142 KLACEALIESYCHTFDMQAWIYR 164

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 41/201 (20%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 63  SVKQKKIFVAGATGSS---GKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKA 119
           S   K   V   TG+S   G+ I E  +A G  V    R  +     ++      + +  
Sbjct: 2   SESAKVWLV---TGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISL 58

Query: 120 DVTEGSAKLSEAIGDDSEA------VV-CATGFQPGWDLFAPW------------KVDNF 160
           DVT+   ++     D          +V  A     G      +            ++  F
Sbjct: 59  DVTD-GERIDVVAADVLARYGRVDVLVNNA-----GRTQVGAFEETTERELRDLFELHVF 112

Query: 161 GTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV--FGLTLIAK-LQ 213
           G   L  A     R+RG    + ISS        GQ+    +   +     L  +++ L 
Sbjct: 113 GPARLTRALLPQMRERGSGSVVNISSFG------GQLSFAGFSAYSATKAALEQLSEGLA 166

Query: 214 AEQYIRKSGINYTIIRPGGLR 234
            E  +   GI   I+ PG  R
Sbjct: 167 DE--VAPFGIKVLIVEPGAFR 185

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 54/278 (19%), Positives = 87/278 (31%), Gaps = 69/278 (24%)

Query: 34  VSTTKTWSHSINSTKMGKSEITEEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAV 93
            +  K     ++S  +G    +        ++ + I V G  G  G  IV+ L  KG   
Sbjct: 21  TAAAKFERQHMDSPDLGTGGGSG-------IEGRMIIVTGGAGFIGSNIVKALNDKGITD 73

Query: 94  KAGVRDLDKAKTT-----LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV--CATGFQ 146
              +  +D  K       L   N +  + K D       ++     D EA+    A    
Sbjct: 74  ---ILVVDNLKDGTKFVNLVDLNIADYMDKEDFLI--QIMAGEEFGDVEAIFHEGACSST 128

Query: 147 PGWDLFAPWKVDNF-GTVNLVEACRKRGVNRFILISSILVNGAAM-----------GQIL 194
             WD       +N+  +  L+  C +R +  F+  SS     AA             +  
Sbjct: 129 TEWDG-KYMMDNNYQYSKELLHYCLEREI-PFLYASS-----AATYGGRTSDFIESREYE 181

Query: 195 NPAYIFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRP----GGLRNEPPTG------ 240
            P    LNVFG +   K   ++Y+R    ++       R     G    E   G      
Sbjct: 182 KP----LNVFGYS---KFLFDEYVRQILPEANSQIVGFRYFNVYG--PREGHKGSMASVA 232

Query: 241 ----NIIMETED-TLYE--GTISRDQV-AEVAVEALLH 270
                 +   E   L+E      RD V      +  L 
Sbjct: 233 FHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 270

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 68/192 (35%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           +++ V GATG  G+ + ++     +                       +  + ++ + +A
Sbjct: 3   RRVLVTGATGLLGRAVHKEFQQNNWHAVG-----------CGFRRARPKFEQVNLLDSNA 51

Query: 127 KLSEAIGDDSEAVV--CA--TGFQPGWDLFAP----------WKVDNFGTVNLVEACRKR 172
            +   I D    V+  CA             P           +++   + NL +     
Sbjct: 52  -VHHIIHDFQPHVIVHCAAER---------RPDVVENQPDAASQLNVDASGNLAKEAAAV 101

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIF---------------LNVFGLTLIAKLQAEQY 217
           G    I ISS               Y+F               LN++G T   KL  E+ 
Sbjct: 102 GA-FLIYISS--------------DYVFDGTNPPYREEDIPAPLNLYGKT---KLDGEKA 143

Query: 218 IRKSGINYTIIR 229
           + ++ +   ++R
Sbjct: 144 VLENNLGAAVLR 155

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 39/251 (15%), Positives = 81/251 (32%), Gaps = 53/251 (21%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
               I V GA    G+ +   L+ +G  V    R   + +        ++  + AD+   
Sbjct: 2   SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHH 61

Query: 125 SAKLSEAIGDDSEA-------VVCATGFQPGWDLFAP--------WK----VDNFGTVNL 165
              +  A     E        + CA     G   F P         +     +   T+ +
Sbjct: 62  ED-VDVAFAAAVEWGGLPELVLHCA-----GTGEFGPVGVYTAEQIRRVMESNLVSTILV 115

Query: 166 VEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV-----FGLTLIAK-LQAE 215
            +       +RG      + S         Q+        ++     +G+    + L+AE
Sbjct: 116 AQQTVRLIGERG-GVLANVLSSA------AQVGKANE---SLYCASKWGMRGFLESLRAE 165

Query: 216 QYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSY 275
             ++ S +    + P G+R+E         T+     G ++ +  A   ++AL    S +
Sbjct: 166 --LKDSPLRLVNLYPSGIRSE-----FWDNTDHVDPSGFMTPEDAAAYMLDALEARSSCH 218

Query: 276 KVVEIISRVDA 286
            V ++    + 
Sbjct: 219 -VTDLFIGRNE 228

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 47/168 (27%)

Query: 161 GTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-- 218
              ++++   +      IL+SS     +      NP       +G +   KLQ EQ +  
Sbjct: 72  YLDHVLDILTRNTKKPAILLSS-----SIQATQDNP-------YGES---KLQGEQLLRE 116

Query: 219 --RKSGINYTIIR------PGG---------------LRNEPPTGNIIMETEDTLYEGTI 255
              + G    I R                         RNE    N         Y   I
Sbjct: 117 YAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDI 176

Query: 256 SRDQVAEVAVEALLH-------PESSYKVVEIISRVDAPKRSYEDLFG 296
             +    +     +              + EI+  +   K+S  D   
Sbjct: 177 VAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTL 224

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 36/155 (23%)

Query: 66  QKKIFVAGATGSSGKRIVEQLL---AKGFAVKAGVRDLDKAK--TTLSKDNPSLQIVKAD 120
              I + G     G  +V+ LL        +    R+ ++AK    L+K++ ++ I++ D
Sbjct: 21  MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEID 80

Query: 121 VT------EGSAKLSEAIGDDS-EAVVCATGFQPGWDLFAPWKVDNF---------GTVN 164
           +       +  A +     D     +    G  P        +               + 
Sbjct: 81  LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIM 140

Query: 165 LVEAC---------------RKRGVNRFILISSIL 184
           L +AC                  G    I +SSIL
Sbjct: 141 LAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 175

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 52/180 (28%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLD-----KAKTTLSKDNPSLQIVKA-- 119
           KI + GA G  G+ I +QL  K   V    V+DLD           ++  P++ ++    
Sbjct: 14  KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNV-VINCAA 72

Query: 120 ----DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN 175
               D  E          +  +                 +K++  G  NL  A    G  
Sbjct: 73  HTAVDKCE----------EQYDLA---------------YKINAIGPKNLAAAAYSVGA- 106

Query: 176 RFILISSILV-NGAAMG-----QILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIR 229
             + IS+  V +G A         +NP     + +G T   KL+ E +++     Y I+R
Sbjct: 107 EIVQISTDYVFDGEAKEPITEFDEVNP----QSAYGKT---KLEGENFVKALNPKYYIVR 159

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 25/181 (13%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGS 125
           ++ + G  G  G  + E+LL +       V  LD     +S+  ++P    V+ D++   
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYE---VYGLDIGSDAISRFLNHPHFHFVEGDISI-H 57

Query: 126 AKLSEAIGDDSEAV---VCATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVNRFIL 179
           ++  E      + V   V      P      P   +++D    + ++  C K    R I 
Sbjct: 58  SEWIEYHVKKCDVVLPLVAIAT--PIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIF 114

Query: 180 ISSILVNGAAMGQILNPAYIFLNVFGLTLI------AKLQAEQ----YIRKSGINYTIIR 229
            S+  V G    +  +  +  L V  +         +K   ++    Y  K G+ +T+ R
Sbjct: 115 PSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFR 174

Query: 230 P 230
           P
Sbjct: 175 P 175

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 57/265 (21%), Positives = 87/265 (32%), Gaps = 75/265 (28%)

Query: 62  VSVKQKKIFVAGAT-GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--------NP 112
           V+ K K + + GA  GS G  +++ LL  G  V        K  T   +           
Sbjct: 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGS 531

Query: 113 SLQIV------KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDL-----FAPW-----K 156
           +L +V      K DV      L E I D  +          GWDL     FA       +
Sbjct: 532 TLIVVPFNQGSKQDVE----ALIEFIYDTEKNGG------LGWDLDAIIPFAAIPEQGIE 581

Query: 157 VDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFL----N--VFG----- 205
           +++  + +     R    N   ++  +    +A G    PA + L    N   FG     
Sbjct: 582 LEHIDSKSEFAH-RIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMY 640

Query: 206 ------L-TLIAKLQAE---QYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEG-- 253
                 L TL  +  +E     +   G      R  GL          M   + + EG  
Sbjct: 641 SESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGL----------MSANNIIAEGIE 690

Query: 254 -----TISRDQVAEVAVEALLHPES 273
                T S+ ++A   +  LL PE 
Sbjct: 691 KMGVRTFSQKEMAFNLL-GLLTPEV 714

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 50/280 (17%), Positives = 88/280 (31%), Gaps = 71/280 (25%)

Query: 63  SVKQKKIFVAGATGSS---GKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--------N 111
            + +K I +   TG+S   G+   E L   G  V A +RD+     +  +         +
Sbjct: 2   VMSKKIILI---TGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDND 58

Query: 112 PSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQP--------GWDLFAP--------- 154
             L+ ++ DV    + +  AI    + ++   G           G  +F P         
Sbjct: 59  VDLRTLELDVQSQVS-VDRAI----DQIIGEDG--RIDVLIHNAGHMVFGPAEAFTPEQF 111

Query: 155 ---WKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV---F 204
              + ++   T  +  A     R++     I ISS             P Y+        
Sbjct: 112 AELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSS------SAGGTPPYLAPYFAAKA 165

Query: 205 GLTLIAK-LQAEQYIRKSGINYTIIRPGGLR---------NEPPTGNIIMETEDTLYEGT 254
            +  IA     E  + + GI  +II PG              P       E E     G 
Sbjct: 166 AMDAIAVQYARE--LSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGL 223

Query: 255 ISRDQVAEVAVEALLHPESSYKVVEIISRV---DAPKRSY 291
              +++ +     +        V + I RV    + KR +
Sbjct: 224 --GEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPF 261

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 52/182 (28%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLD-----KAKTTLSKDNPSLQIVKA 119
           ++++ + GA G  GK++ E+L  + + +     + LD     + +  + +  P + I+  
Sbjct: 5   KERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHI-IIHC 63

Query: 120 ------DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG 173
                 D  E           + +                 + ++  G  N+  A +  G
Sbjct: 64  AAYTKVDQAE----------KERDLA---------------YVINAIGARNVAVASQLVG 98

Query: 174 VNRFILISSILV-NGAAMG-----QILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTI 227
             + + IS+  V  G             P    +N++G +   K   EQ++++    Y I
Sbjct: 99  A-KLVYISTDYVFQGDRPEGYDEFHNPAP----INIYGAS---KYAGEQFVKELHNKYFI 150

Query: 228 IR 229
           +R
Sbjct: 151 VR 152

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 34/138 (24%)

Query: 61  NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAV----------KAGVRDLDKAKTTLSKD 110
           ++   +K+I + G  G  G  + ++L+  G  V          K  V             
Sbjct: 22  HMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW--------IG 73

Query: 111 NPSLQIVKADVTEGSAKLSEAIGDDSEAVV---CATGFQPGWDLFAP---WKVDNFGTVN 164
           + + +++  DV        E +  + + +          P   ++ P    K +  GT+N
Sbjct: 74  HENFELINHDVV-------EPLYIEVDQIYHLASPAS--PPNYMYNPIKTLKTNTIGTLN 124

Query: 165 LVEACRKRGVNRFILISS 182
           ++   ++ G  R +L S+
Sbjct: 125 MLGLAKRVGA-RLLLAST 141

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 31/170 (18%), Positives = 49/170 (28%), Gaps = 37/170 (21%)

Query: 66  QKKIFVAGATGSSGKRIVEQLLAKGFAVK--AGVRDLDKAKTTLSKDNPSLQIVKADVT- 122
              + V GA    G  +V+QL+         A  RD++KA    S  +  + ++   VT 
Sbjct: 3   PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC 62

Query: 123 -----EGSAKLSEAIGDDS-EAVVCATGFQPGWDLFAPWKVDNF---------GTVNLVE 167
                   +K+ E +G D    ++   G    +                      V L +
Sbjct: 63  DKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQ 122

Query: 168 AC---------------RKRGVNRFILISSIL----VNGAAMGQILNPAY 198
                                    I ISS L     N +   Q    AY
Sbjct: 123 KLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAY 172

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 25/123 (20%), Positives = 35/123 (28%), Gaps = 4/123 (3%)

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI 116
                 SVK KK  V   TG  G R    L  +G  V    R LDKA+      N   ++
Sbjct: 110 VKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKV 169

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCAT--GFQ--PGWDLFAPWKVDNFGTVNLVEACRKR 172
                              +  V  A   G +  P         ++     N        
Sbjct: 170 NVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIG 229

Query: 173 GVN 175
           G++
Sbjct: 230 GID 232

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 50/149 (33%)

Query: 161 GTVNLVEACRKRGVNRFILISSILVNGAAMG----------QILNPAYIFLNVFGLTLIA 210
            +  L+  C +R +  F+  SS     A  G          +   P    LNV+G +   
Sbjct: 96  YSKELLHYCLEREI-PFLYASS----AATYGGRTSDFIESREYEKP----LNVYGYS--- 143

Query: 211 KLQAEQYIR----KSGINYTIIRP----GGLRNEPPTG----------NIIMETED-TLY 251
           K   ++Y+R    ++       R     G    E   G            +   E   L+
Sbjct: 144 KFLFDEYVRQILPEANSQIVGFRYFNVYG--PREGHKGSMASVAFHLNTQLNNGESPKLF 201

Query: 252 E--GTISRD-----QVAEVAVEALLHPES 273
           E      RD      VA+V +  L +  S
Sbjct: 202 EGSENFKRDFVYVGDVADVNLWFLENGVS 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	100.0
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	100.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	100.0
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	100.0
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	100.0
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	100.0
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	100.0
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	100.0
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	100.0
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	100.0
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	100.0
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	100.0
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	100.0
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	100.0
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	100.0
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	100.0
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	100.0
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	100.0
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	100.0
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	100.0
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	100.0
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	100.0
1xq6_A	253	Unknown protein; structural genomics, protein stru	100.0
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	100.0
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	100.0
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	100.0
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	100.0
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	100.0
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	100.0
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	100.0
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	100.0
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	100.0
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	100.0
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	100.0
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	100.0
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	100.0
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	100.0
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.98
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.98
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.98
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.98
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.98
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.98
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.98
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.98
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.98
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.98
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.98
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.97
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.97
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.97
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.97
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.97
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.97
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.97
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.97
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.97
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.97
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.97
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.97
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.97
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.97
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.97
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.97
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.97
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.97
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.97
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.97
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.97
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.97
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.97
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.97
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.97
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.97
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.96
1spx_A	278	Short-chain reductase family member (5L265); paral	99.96
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.96
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.96
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.96
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.96
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.96
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.96
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.96
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.96
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.96
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.96
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.96
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.96
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.96
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.96
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.96
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.96
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.96
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.96
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.96
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.96
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.96
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.96
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.96
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.96
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.96
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.96
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.96
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.96
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.96
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.96
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.95
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.95
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.95
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.95
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.95
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.95
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.95
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.95
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.95
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.95
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.95
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.95
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.95
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.95
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.95
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.95
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.95
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.95
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.95
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.95
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.95
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.95
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.95
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.95
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.95
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.95
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.95
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.95
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.95
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.95
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.95
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.95
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.95
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.95
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.95
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.95
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.95
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.95
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.95
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.95
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.95
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.95
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.95
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.95
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.95
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.95
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.95
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.95
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.95
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.95
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.95
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.95
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.95
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.95
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.95
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.95
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.95
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.95
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.95
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.95
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.95
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.95
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.95
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.95
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.95
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.95
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.95
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.95
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.95
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.95
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.95
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.95
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.95
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.95
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.95
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.95
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.95
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.95
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.95
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.95
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.95
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.95
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.95
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.94
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.94
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.94
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.94
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.94
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.94
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.94
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.94
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.94
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.94
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.94
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.94
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.94
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.94
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.94
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.94
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.94
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.94
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.94
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.94
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.94
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.94
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.94
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.94
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.94
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.94
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.94
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.94
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.94
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.94
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.94
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.94
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.94
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.94
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.94
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.94
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.94
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.94
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.94
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.94
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.94
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.94
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.94
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.94
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.94
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.94
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.94
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.94
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.94
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.94
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.94
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.94
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.94
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.94
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.94
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.94
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.94
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.94
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.94
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.94
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.94
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.94
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.94
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.94
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.93
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.93
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.93
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.93
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.93
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.93
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.93
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.93
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.93
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.93
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.93
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.93
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.93
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.93
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.93
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.93
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.93
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.93
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.93
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.93
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.93
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.93
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.93
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.93
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.93
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.93
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.93
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.92
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.92
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.92
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.92
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.92
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.92
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.92
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.91
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.91
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.91
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.91
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.91
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.91
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.9
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.88
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.88
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.87
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.86
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.86
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.86
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.85
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.85
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.85
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.84
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.84
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.83
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.81
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.79
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.78
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.75
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.75
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.75
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.67
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.62
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.54
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.35
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.29
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.26
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	99.06
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	99.04
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	99.01
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.92
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.89
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.86
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.85
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.8
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.79
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.78
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.77
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.71
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.69
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.67
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.52
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.45
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.4
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.38
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.38
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.28
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.26
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.23
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.23
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.22
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.19
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.17
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.15
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.13
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.09
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.08
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.07
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.06
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.06
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.05
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	98.04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.03
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.98
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.98
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.97
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.96
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.94
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.92
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	97.91
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.9
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.89
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.89
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.89
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.88
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.88
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.87
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.85
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.84
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.81
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.77
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.75
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.75
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.75
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.72
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.72
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.71
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	97.7
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.69
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.69
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.68
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.68
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.65
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.62
1lnq_A	336	MTHK channels, potassium channel related protein;	97.61
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.6
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.59
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.58
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.57
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.57
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.57
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.57
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.55
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.55
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.54
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.53
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.52
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.47
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.45
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.45
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.45
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.44
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.43
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.39
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.38
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.37
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.36
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.34
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.33
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.32
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.32
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.31
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.29
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.28
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.28
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.27
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.27
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.27
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	97.26
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.26
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.25
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.24
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.23
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.21
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.2
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.2
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.19
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.19
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.19
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.18
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.16
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.16
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.16
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.14
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.13
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.13
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.12
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.12
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.11
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.1
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.1
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.09
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.09
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.09
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.08
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.08
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.07
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.06
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.04
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.04
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.04
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.03
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.02
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	97.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.0
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.99
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.99
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.99
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.98
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.97
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.97
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.95
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.94
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.93
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.93
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.93
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.91
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.9
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.89
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.89
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.89
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.88
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.88
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.88
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.88
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.85
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.85
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.83
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.82
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.82
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.8
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.8
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.8
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.78
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.77
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	96.77
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.76
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.76
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.75
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.74
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.74
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.73
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.73
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	96.71
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.69
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.69
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.69

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=100.00  E-value=9.7e-37  Score=258.92  Aligned_cols=219  Identities=25%  Similarity=0.369  Sum_probs=182.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCe-EEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSL-QIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ..+++|+||||||+|+||++++++|+++|++|++++|++++.+++..   .++ .++.+|++   +.+.+++++ +|+||
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~---~~~~~~~~~Dl~---~~~~~~~~~-~D~vi   89 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE---RGASDIVVANLE---EDFSHAFAS-IDAVV   89 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH---TTCSEEEECCTT---SCCGGGGTT-CSEEE
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh---CCCceEEEcccH---HHHHHHHcC-CCEEE
Confidence            46789999999999999999999999999999999999887766543   478 99999998   467788888 99999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (301)
                      ||||.....++...+++|+.++.++++++++.++++||++||...+...        ..+ .+...|+.+|.++|+++++
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~--------~~~-~~~~~Y~~sK~~~e~~~~~  160 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPD--------QGP-MNMRHYLVAKRLADDELKR  160 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGG--------GSC-GGGHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCC--------CCh-hhhhhHHHHHHHHHHHHHH
Confidence            9999877777888899999999999999999999999999996543211        011 4568899999999999999


Q ss_pred             cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          221 SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       221 ~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .|+++++||||+++|+...+.+...........+++++|+|++++.++.++...+++|++.++    ..++.|+++.|++
T Consensus       161 ~gi~~~~lrpg~v~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~v~~~----~~~~~e~~~~i~~  236 (236)
T 3e8x_A          161 SSLDYTIVRPGPLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLNG----DTPIAKVVEQLGS  236 (236)
T ss_dssp             SSSEEEEEEECSEECSCCCSEEEEESSCSCCCCCEEHHHHHHHHHHHTTCGGGTTEEEEEEEC----SEEHHHHHHTC--
T ss_pred             CCCCEEEEeCCcccCCCCCCeEEeccCCCcccCcEeHHHHHHHHHHHhcCccccCCeEEEeCC----CcCHHHHHHHhcC
Confidence            999999999999999987776554443333457899999999999999888778899999983    5999999998763

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=100.00  E-value=1.3e-35  Score=266.21  Aligned_cols=233  Identities=14%  Similarity=0.140  Sum_probs=188.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---C-----CCCeEEEEccCCCChHhHHHHhc
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D-----NPSLQIVKADVTEGSAKLSEAIG  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~-----~~~~~~~~~Dl~~~~~~~~~~~~  133 (301)
                      +.+++|+||||||+||||++++++|+++|++|++++|+..........   .     ..+++++.+|++| .+++.+++.
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~   99 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD-LTTCEQVMK   99 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC-HHHHHHHTT
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCC-HHHHHHHhc
Confidence            556789999999999999999999999999999999976543221110   0     0689999999999 899999999


Q ss_pred             CCCCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          134 DDSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      + +|+||||||....    .++...+++|+.++.++++++++.++++|||+||.++|+.....+..++. +..+.+.|+.
T Consensus       100 ~-~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~  177 (351)
T 3ruf_A          100 G-VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAV  177 (351)
T ss_dssp             T-CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-CCCCCSHHHH
T ss_pred             C-CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCC-CCCCCChhHH
Confidence            8 9999999996431    34556789999999999999999999999999999999877665555443 3466788999


Q ss_pred             HHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc-------------------eeeccccccccCCCCHHHHHHHHHH
Q 022216          210 AKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN-------------------IIMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       210 sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~-------------------~~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      +|.++|++++    +.|++++++||++++|+.....                   +...+.......+++++|+|++++.
T Consensus       178 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~  257 (351)
T 3ruf_A          178 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNIL  257 (351)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHH
Confidence            9999998775    3699999999999999865432                   1111223334578999999999998


Q ss_pred             HhcC-CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLH-PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~-~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++.. +...+++||++++   +.+++.|+++.+.+
T Consensus       258 ~~~~~~~~~~~~~ni~~~---~~~s~~e~~~~i~~  289 (351)
T 3ruf_A          258 SALAKDSAKDNIYNVAVG---DRTTLNELSGYIYD  289 (351)
T ss_dssp             HHTCCGGGCSEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             HHhhccccCCCEEEeCCC---CcccHHHHHHHHHH
Confidence            8887 4567899999996   99999999998875

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=100.00  E-value=1e-35  Score=268.95  Aligned_cols=231  Identities=15%  Similarity=0.201  Sum_probs=188.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCC-CChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT-EGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~d~Vi  140 (301)
                      +|++|+||||||+||||++++++|+++ |++|++++|+.++...+.  ...+++++.+|++ | .+.+.+++.+ +|+||
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~--~~~~v~~~~~Dl~~d-~~~~~~~~~~-~d~Vi   96 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV--KHERMHFFEGDITIN-KEWVEYHVKK-CDVIL   96 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG--GSTTEEEEECCTTTC-HHHHHHHHHH-CSEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc--cCCCeEEEeCccCCC-HHHHHHHhcc-CCEEE
Confidence            467899999999999999999999998 999999999987766554  2468999999999 7 8899999998 99999


Q ss_pred             EccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhc------chhhHHHHH
Q 022216          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFL------NVFGLTLIA  210 (301)
Q Consensus       141 ~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~------~~~~~y~~s  210 (301)
                      |||+....    .++...+++|+.++.++++++++.+ ++|||+||.++|+.....+..++..+.      .+.+.|+.+
T Consensus        97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~s  175 (372)
T 3slg_A           97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACS  175 (372)
T ss_dssp             ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHH
T ss_pred             EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHH
Confidence            99997542    2455677999999999999999999 899999999999976655544443221      466789999


Q ss_pred             HHHHHHHHHHc---CCcEEEEecCcccCCCCCC-----------------------ceeeccccccccCCCCHHHHHHHH
Q 022216          211 KLQAEQYIRKS---GINYTIIRPGGLRNEPPTG-----------------------NIIMETEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       211 K~~~e~~~~~~---~i~~~~irpg~v~~~~~~~-----------------------~~~~~~~~~~~~~~v~~~Dva~~~  264 (301)
                      |.++|++++.+   +++++++||++++|+...+                       .+...........+++++|+|+++
T Consensus       176 K~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~  255 (372)
T 3slg_A          176 KQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISAL  255 (372)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHH
Confidence            99999988765   9999999999999987542                       011122223334689999999999


Q ss_pred             HHHhcCCC--CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          265 VEALLHPE--SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.++..+.  ..+++||++++  ++.+++.|+++.+.+
T Consensus       256 ~~~~~~~~~~~~~~~~ni~~~--~~~~s~~e~~~~i~~  291 (372)
T 3slg_A          256 MKIIENSNGVATGKIYNIGNP--NNNFSVRELANKMLE  291 (372)
T ss_dssp             HHHHHCGGGTTTTEEEEECCT--TCEEEHHHHHHHHHH
T ss_pred             HHHHhcccCcCCCceEEeCCC--CCCccHHHHHHHHHH
Confidence            99998875  57899999982  279999999999875

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=100.00  E-value=1.7e-34  Score=242.33  Aligned_cols=209  Identities=27%  Similarity=0.409  Sum_probs=177.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+||||||+|+||++++++|+++|++|++++|++++....     .+++++.+|++|..+++.+++++ +|+||||||..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-----~~~~~~~~D~~d~~~~~~~~~~~-~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-----NNVKAVHFDVDWTPEEMAKQLHG-MDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-----TTEEEEECCTTSCHHHHHTTTTT-CSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-----CCceEEEecccCCHHHHHHHHcC-CCEEEECCcCC
Confidence            5899999999999999999999999999999998765432     68999999999845889999999 99999999976


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH-HHcCCcE
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-RKSGINY  225 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-~~~~i~~  225 (301)
                      .    ...+++|+.++.++++++++.++++||++||.++++...   ..+  .+..+...|+.+|.++|+++ +..++++
T Consensus        75 ~----~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~---~~e--~~~~~~~~Y~~sK~~~e~~~~~~~~i~~  145 (219)
T 3dqp_A           75 G----KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPEK---WIG--AGFDALKDYYIAKHFADLYLTKETNLDY  145 (219)
T ss_dssp             T----SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGGG---CCS--HHHHHTHHHHHHHHHHHHHHHHSCCCEE
T ss_pred             C----CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCCc---ccc--cccccccHHHHHHHHHHHHHHhccCCcE
Confidence            4    247899999999999999999999999999988765332   222  34456789999999999999 7789999


Q ss_pred             EEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHH
Q 022216          226 TIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGS  297 (301)
Q Consensus       226 ~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~  297 (301)
                      ++||||+++|+...+.+...   .....+++++|+|++++.++.++...+++|++.+    ...+++|+.+.
T Consensus       146 ~ilrp~~v~g~~~~~~~~~~---~~~~~~i~~~Dva~~i~~~l~~~~~~g~~~~i~~----g~~~~~e~~~~  210 (219)
T 3dqp_A          146 TIIQPGALTEEEATGLIDIN---DEVSASNTIGDVADTIKELVMTDHSIGKVISMHN----GKTAIKEALES  210 (219)
T ss_dssp             EEEEECSEECSCCCSEEEES---SSCCCCEEHHHHHHHHHHHHTCGGGTTEEEEEEE----CSEEHHHHHHT
T ss_pred             EEEeCceEecCCCCCccccC---CCcCCcccHHHHHHHHHHHHhCccccCcEEEeCC----CCccHHHHHHH
Confidence            99999999999777665543   3345689999999999999998877789999988    35999998865

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=100.00  E-value=2.3e-34  Score=253.98  Aligned_cols=221  Identities=18%  Similarity=0.163  Sum_probs=182.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +|+||||||+|+||++++++|+++|++|++++|++....  .    .++.++.+|++  .+++.+++.+ +|+|||||+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~----~~~~~~~~Dl~--~~~~~~~~~~-~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--I----NDYEYRVSDYT--LEDLINQLND-VDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----------CCEEEECCCC--HHHHHHHTTT-CSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--C----CceEEEEcccc--HHHHHHhhcC-CCEEEEcccc
Confidence            479999999999999999999999999999999844332  2    38899999999  6889999998 9999999997


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH----c
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK----S  221 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~----~  221 (301)
                      ....++...+++|+.++.++++++++.++++|||+||.++|+.....+..++. +..+.+.|+.+|.++|++++.    .
T Consensus        73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~~~~~  151 (311)
T 3m2p_A           73 RGSQGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKE-LPLPDLMYGVSKLACEHIGNIYSRKK  151 (311)
T ss_dssp             CCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTS-CCCCSSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHHHHHc
Confidence            66557788899999999999999999999999999999999877655544443 445678899999999988864    6


Q ss_pred             CCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCC
Q 022216          222 GINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDA  286 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~  286 (301)
                      |++++++||++++|+.....               +...+.......+++++|+|++++.++..+. .+++||++++   
T Consensus       152 g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~-~~~~~~i~~~---  227 (311)
T 3m2p_A          152 GLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK-VSGTFNIGSG---  227 (311)
T ss_dssp             CCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT-CCEEEEECCS---
T ss_pred             CCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC-CCCeEEeCCC---
Confidence            99999999999999875421               1121223334468999999999999998876 7889999986   


Q ss_pred             CCcCHHHHHHHhhc
Q 022216          287 PKRSYEDLFGSIKQ  300 (301)
Q Consensus       287 ~~~s~~e~~~~i~~  300 (301)
                      +.+++.|+++.+++
T Consensus       228 ~~~s~~e~~~~i~~  241 (311)
T 3m2p_A          228 DALTNYEVANTINN  241 (311)
T ss_dssp             CEECHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHH
Confidence            89999999999875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=100.00  E-value=1.7e-34  Score=258.47  Aligned_cols=224  Identities=20%  Similarity=0.154  Sum_probs=178.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ...++|+||||||+||||++++++|+++|++|++++|+...         .++.++.+|++| .+.+.+++.+ +|+|||
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------~~~~~~~~Dl~d-~~~~~~~~~~-~d~vih   83 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------TGGEEVVGSLED-GQALSDAIMG-VSAVLH   83 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------SCCSEEESCTTC-HHHHHHHHTT-CSEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------CCccEEecCcCC-HHHHHHHHhC-CCEEEE
Confidence            35578999999999999999999999999999999998654         577899999999 8999999999 999999


Q ss_pred             ccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccc--cCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA--AMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       142 ~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~--~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      +|+....  .++...+++|+.++.++++++++.++++|||+||.++|+.  ....+..+.. +..+.+.|+.+|.++|++
T Consensus        84 ~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~-~~~~~~~Y~~sK~~~E~~  162 (347)
T 4id9_A           84 LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDH-PLCPNSPYGLTKLLGEEL  162 (347)
T ss_dssp             CCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTS-CCCCCSHHHHHHHHHHHH
T ss_pred             CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCC-CCCCCChHHHHHHHHHHH
Confidence            9986543  2336678999999999999999999999999999999987  3333334433 345678899999999988


Q ss_pred             HH----HcCCcEEEEecCccc-------------CCCCCC--------------------------ceeeccccccccCC
Q 022216          218 IR----KSGINYTIIRPGGLR-------------NEPPTG--------------------------NIIMETEDTLYEGT  254 (301)
Q Consensus       218 ~~----~~~i~~~~irpg~v~-------------~~~~~~--------------------------~~~~~~~~~~~~~~  254 (301)
                      ++    +.+++++++||++++             ||....                          .+...+.......+
T Consensus       163 ~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  242 (347)
T 4id9_A          163 VRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPF  242 (347)
T ss_dssp             HHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBC
T ss_pred             HHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCC
Confidence            75    468999999999999             653110                          01111122223456


Q ss_pred             ----CCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          255 ----ISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       255 ----v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                          ++++|+|++++.++..+...+++||++++   +.+++.|+++.+.+
T Consensus       243 ~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~---~~~s~~e~~~~i~~  289 (347)
T 4id9_A          243 RMHITDTRDMVAGILLALDHPEAAGGTFNLGAD---EPADFAALLPKIAA  289 (347)
T ss_dssp             EECEEEHHHHHHHHHHHHHCGGGTTEEEEESCS---SCEEHHHHHHHHHH
T ss_pred             ccCcEeHHHHHHHHHHHhcCcccCCCeEEECCC---CcccHHHHHHHHHH
Confidence                99999999999999988667889999996   89999999999865

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=100.00  E-value=3.4e-34  Score=256.48  Aligned_cols=232  Identities=14%  Similarity=0.094  Sum_probs=179.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCch--hhhccc-cCCCCeEEEEccCCCChHhHHHHhcC-CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDK--AKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~--~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~  136 (301)
                      .+++|+||||||+||||++++++|+++|  ++|++++|....  ...+.. ....++.++.+|++| .+.+.+++.+ ++
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~   99 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQN-GELLEHVIKERDV   99 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC-HHHHHHHHHHHTC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCC-HHHHHHHHhhcCC
Confidence            4568999999999999999999999999  677777776422  111111 123689999999999 8889988875 69


Q ss_pred             CEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC-CCCCCcchhhcchhhHHHHHH
Q 022216          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-GQILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       137 d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~-~~~~~~~~~~~~~~~~y~~sK  211 (301)
                      |+||||||....    .++...+++|+.++.++++++++.++++|||+||.++|+... ..+..+. .+..+.+.|+.+|
T Consensus       100 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-~~~~p~~~Y~~sK  178 (346)
T 4egb_A          100 QVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-TPLAPNSPYSSSK  178 (346)
T ss_dssp             CEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-SCCCCCSHHHHHH
T ss_pred             CEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC-CCCCCCChhHHHH
Confidence            999999996542    456677899999999999999999999999999999998763 3333333 3446678899999


Q ss_pred             HHHHHHHHH----cCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          212 LQAEQYIRK----SGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       212 ~~~e~~~~~----~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      .++|++++.    .|++++++||++++|+.....               +...+......++++++|+|++++.++..+.
T Consensus       179 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~  258 (346)
T 4egb_A          179 ASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR  258 (346)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC
Confidence            999988764    699999999999999865321               1122223334468999999999999998776


Q ss_pred             CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          273 SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       273 ~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                       .+++||++++   +.+++.|+++.+.+
T Consensus       259 -~g~~~~i~~~---~~~s~~e~~~~i~~  282 (346)
T 4egb_A          259 -VGEVYNIGGN---NEKTNVEVVEQIIT  282 (346)
T ss_dssp             -TTCEEEECCS---CCEEHHHHHHHHHH
T ss_pred             -CCCEEEECCC---CceeHHHHHHHHHH
Confidence             6889999996   88999999998875

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=100.00  E-value=2.7e-34  Score=257.85  Aligned_cols=236  Identities=14%  Similarity=0.121  Sum_probs=186.1

Q ss_pred             hhhhcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch----hhhccccC----CCCeEEEEccCCCChHhHHH
Q 022216           59 EENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----AKTTLSKD----NPSLQIVKADVTEGSAKLSE  130 (301)
Q Consensus        59 ~~~~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~----~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~  130 (301)
                      ....++++|+||||||+||||++++++|+++|++|++++|+...    +..+....    ..++.++.+|++| .+++.+
T Consensus        20 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~   98 (352)
T 1sb8_A           20 RKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRN-LDDCNN   98 (352)
T ss_dssp             HHHHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTS-HHHHHH
T ss_pred             chhcCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCC-HHHHHH
Confidence            33456788999999999999999999999999999999997642    22111100    2578999999999 899999


Q ss_pred             HhcCCCCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          131 AIGDDSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       131 ~~~~~~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ++.+ +|+||||||....    .++...+++|+.++.++++++++.++++||++||.++|+.....+..+.. +..+.+.
T Consensus        99 ~~~~-~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~-~~~~~~~  176 (352)
T 1sb8_A           99 ACAG-VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT-IGKPLSP  176 (352)
T ss_dssp             HHTT-CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-CCCCCSH
T ss_pred             HhcC-CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCC-CCCCCCh
Confidence            9998 9999999996531    35667789999999999999999999999999999999876554444433 2355678


Q ss_pred             HHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc-----e--------------eeccccccccCCCCHHHHHHH
Q 022216          207 TLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN-----I--------------IMETEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       207 y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~-----~--------------~~~~~~~~~~~~v~~~Dva~~  263 (301)
                      |+.+|.++|++++    +.|++++++||++++|+.....     +              ...........+++++|+|++
T Consensus       177 Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a  256 (352)
T 1sb8_A          177 YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQA  256 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHH
Confidence            9999999998875    3599999999999999865321     0              011112233468999999999


Q ss_pred             HHHHhcCC-CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          264 AVEALLHP-ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       264 ~~~~l~~~-~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++.++..+ ...+++||++++   +.+++.|+++.+.+
T Consensus       257 ~~~~~~~~~~~~~~~~ni~~~---~~~s~~e~~~~i~~  291 (352)
T 1sb8_A          257 NLLAATAGLDARNQVYNIAVG---GRTSLNQLFFALRD  291 (352)
T ss_dssp             HHHHHTCCGGGCSEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             HHHHHhccccCCCceEEeCCC---CCccHHHHHHHHHH
Confidence            98888763 456889999985   89999999998865

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=100.00  E-value=2.4e-34  Score=253.78  Aligned_cols=223  Identities=16%  Similarity=0.159  Sum_probs=179.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+||||||+||||++++++|+++|++|++++|+.....+..   ..+++++.+|++| .+ +.+.+.+  |+||||||..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~Dl~d-~~-~~~~~~~--d~vih~A~~~   73 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV---NPSAELHVRDLKD-YS-WGAGIKG--DVVFHFAANP   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS---CTTSEEECCCTTS-TT-TTTTCCC--SEEEECCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc---CCCceEEECcccc-HH-HHhhcCC--CEEEECCCCC
Confidence            68999999999999999999999999999999877655443   4688999999999 55 7666655  9999999954


Q ss_pred             C----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH--
Q 022216          147 P----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK--  220 (301)
Q Consensus       147 ~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~--  220 (301)
                      .    ..++...+++|+.++.++++++++.++++|||+||.++|+.....+..++ .+..+.+.|+.+|.++|++++.  
T Consensus        74 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-~~~~p~~~Y~~sK~~~e~~~~~~~  152 (312)
T 3ko8_A           74 EVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-EPYKPISVYGAAKAAGEVMCATYA  152 (312)
T ss_dssp             SSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-SCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHH
Confidence            3    23456678999999999999999999999999999999987765554444 3445678899999999987753  


Q ss_pred             --cCCcEEEEecCcccCCCCCCce---------------eeccccccccCCCCHHHHHHHHHHHhcC---CCCCCcEEEe
Q 022216          221 --SGINYTIIRPGGLRNEPPTGNI---------------IMETEDTLYEGTISRDQVAEVAVEALLH---PESSYKVVEI  280 (301)
Q Consensus       221 --~~i~~~~irpg~v~~~~~~~~~---------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~---~~~~~~~~~v  280 (301)
                        .|++++++||++++||......               ...........+++++|+|++++.++..   +...+++||+
T Consensus       153 ~~~g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni  232 (312)
T 3ko8_A          153 RLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNV  232 (312)
T ss_dssp             HHHCCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             HHhCCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEE
Confidence              5999999999999999754321               1122223345689999999999999887   4456789999


Q ss_pred             ecCCCCCCcCHHHHHHHhhc
Q 022216          281 ISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       281 ~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++   +.+++.|+++.+.+
T Consensus       233 ~~~---~~~s~~e~~~~i~~  249 (312)
T 3ko8_A          233 GNV---DAVRVLDIAQIVAE  249 (312)
T ss_dssp             SCS---SCEEHHHHHHHHHH
T ss_pred             cCC---CceeHHHHHHHHHH
Confidence            985   89999999998865

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.3e-34  Score=239.51  Aligned_cols=214  Identities=22%  Similarity=0.239  Sum_probs=169.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +|+||||||+|+||++++++|+++|++|++++|++++...+    ..++.++.+|++| .+++.+++++ +|+||||||.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vi~~a~~   77 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE----NEHLKVKKADVSS-LDEVCEVCKG-ADAVISAFNP   77 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC----CTTEEEECCCTTC-HHHHHHHHTT-CSEEEECCCC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc----cCceEEEEecCCC-HHHHHHHhcC-CCEEEEeCcC
Confidence            58999999999999999999999999999999998765433    2789999999999 8999999999 9999999986


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH----Hc
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----KS  221 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~~  221 (301)
                      ...  ....+++|+.++.++++++++.++++||++||.++|....+.+.  ...+..+...|+.+|.++|.+++    +.
T Consensus        78 ~~~--~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~--~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~  153 (227)
T 3dhn_A           78 GWN--NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRL--MDSGEVPENILPGVKALGEFYLNFLMKEK  153 (227)
T ss_dssp             --------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEEG--GGTTCSCGGGHHHHHHHHHHHHHTGGGCC
T ss_pred             CCC--ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCcc--ccCCcchHHHHHHHHHHHHHHHHHHhhcc
Confidence            532  23378999999999999999999999999999987755433221  12234567889999999995543    57


Q ss_pred             CCcEEEEecCcccCCCCCCc-eeeccccc----cccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHH
Q 022216          222 GINYTIIRPGGLRNEPPTGN-IIMETEDT----LYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYE  292 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~-~~~~~~~~----~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~  292 (301)
                      +++++++||++++|+..... +.......    ....+++++|+|++++.++.++...+++|+++++   ++.+|.
T Consensus       154 ~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~~~~~~g~~~~~~~~---~~~~~~  226 (227)
T 3dhn_A          154 EIDWVFFSPAADMRPGVRTGRYRLGKDDMIVDIVGNSHISVEDYAAAMIDELEHPKHHQERFTIGYL---EHHHHH  226 (227)
T ss_dssp             SSEEEEEECCSEEESCCCCCCCEEESSBCCCCTTSCCEEEHHHHHHHHHHHHHSCCCCSEEEEEECC---SCCC--
T ss_pred             CccEEEEeCCcccCCCccccceeecCCCcccCCCCCcEEeHHHHHHHHHHHHhCccccCcEEEEEee---hhcccC
Confidence            89999999999999865432 22211111    1135799999999999999999989999999996   777665

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=100.00  E-value=8.3e-34  Score=255.68  Aligned_cols=229  Identities=13%  Similarity=0.060  Sum_probs=182.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHH--CCCeEEEEEeCCchh----------hhccccCCCCeEEEEccCCCChHhHH
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLA--KGFAVKAGVRDLDKA----------KTTLSKDNPSLQIVKADVTEGSAKLS  129 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~--~G~~V~~~~r~~~~~----------~~~~~~~~~~~~~~~~Dl~~~~~~~~  129 (301)
                      +.+++|+||||||+||||++++++|++  .|++|++++|+....          .........++.++.+|++| .+.+.
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~   84 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN-PLDLR   84 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC-HHHHH
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCC-HHHHH
Confidence            356789999999999999999999999  999999999976511          11111134578999999999 88898


Q ss_pred             HH-hcCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          130 EA-IGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       130 ~~-~~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ++ ..+ +|+||||||...  ..++...+++|+.|+.++++++++.+++ ||++||.++|+.... +..++. +..+.+.
T Consensus        85 ~~~~~~-~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~-~~~E~~-~~~p~~~  160 (362)
T 3sxp_A           85 RLEKLH-FDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA-PNVVGK-NESPENV  160 (362)
T ss_dssp             HHTTSC-CSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS-SBCTTS-CCCCSSH
T ss_pred             HhhccC-CCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC-CCCCCC-CCCCCCh
Confidence            88 677 999999999654  3566778899999999999999998875 999999999987655 444433 4466788


Q ss_pred             HHHHHHHHHHHHHHcC--CcEEEEecCcccCCCCCCc-------------------eeeccccccccCCCCHHHHHHHHH
Q 022216          207 TLIAKLQAEQYIRKSG--INYTIIRPGGLRNEPPTGN-------------------IIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       207 y~~sK~~~e~~~~~~~--i~~~~irpg~v~~~~~~~~-------------------~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      |+.+|.++|++++...  +++++|||++++||.....                   +...........+++++|+|++++
T Consensus       161 Y~~sK~~~E~~~~~~~~~~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~  240 (362)
T 3sxp_A          161 YGFSKLCMDEFVLSHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANV  240 (362)
T ss_dssp             HHHHHHHHHHHHHHTTTTSCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHH
Confidence            9999999999998755  8899999999999975421                   111122223346899999999999


Q ss_pred             HHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          266 EALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       266 ~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .++..+. .+ +||++++   +.+++.|+++.+.+
T Consensus       241 ~~~~~~~-~g-~~~i~~~---~~~s~~e~~~~i~~  270 (362)
T 3sxp_A          241 KAMKAQK-SG-VYNVGYS---QARSYNEIVSILKE  270 (362)
T ss_dssp             HHTTCSS-CE-EEEESCS---CEEEHHHHHHHHHH
T ss_pred             HHHhcCC-CC-EEEeCCC---CCccHHHHHHHHHH
Confidence            8888775 45 9999985   89999999999875

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=100.00  E-value=7.8e-34  Score=253.52  Aligned_cols=223  Identities=18%  Similarity=0.153  Sum_probs=174.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +|+||||||+||||++++++|+++|++|++++|++.+.+.+.   ..+++++.+|++| .+++.+++.+ +|+||||||.
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~---~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vih~a~~   87 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA---YLEPECRVAEMLD-HAGLERALRG-LDGVIFSAGY   87 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGG---GGCCEEEECCTTC-HHHHHHHTTT-CSEEEEC---
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhc---cCCeEEEEecCCC-HHHHHHHHcC-CCEEEECCcc
Confidence            469999999999999999999999999999999887655432   1478999999999 8999999999 9999999996


Q ss_pred             CC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCC--CCCCcchhhcch----hhHHHHHHHHHHHH
Q 022216          146 QP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG--QILNPAYIFLNV----FGLTLIAKLQAEQY  217 (301)
Q Consensus       146 ~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~--~~~~~~~~~~~~----~~~y~~sK~~~e~~  217 (301)
                      ..  ..++...+++|+.++.++++++++.++++||++||.++|+....  .+ .++ .+..+    .+.|+.+|.++|++
T Consensus        88 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~-~~~~p~~~~~~~Y~~sK~~~e~~  165 (342)
T 2x4g_A           88 YPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEG-LFYDSLPSGKSSYVLCKWALDEQ  165 (342)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTT-CCCSSCCTTSCHHHHHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCC-CCCCccccccChHHHHHHHHHHH
Confidence            44  34677888999999999999999999899999999999986544  23 222 23344    67899999999988


Q ss_pred             HHH---cCCcEEEEecCcccCCCC-C---Ccee---eccc----cccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          218 IRK---SGINYTIIRPGGLRNEPP-T---GNII---METE----DTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       218 ~~~---~~i~~~~irpg~v~~~~~-~---~~~~---~~~~----~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      ++.   .|++++++||++++|+.. .   ..+.   ....    ......+++++|+|++++.++..+.. +++||+.++
T Consensus       166 ~~~~~~~g~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~-g~~~~v~~~  244 (342)
T 2x4g_A          166 AREQARNGLPVVIGIPGMVLGELDIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRI-GERYLLTGH  244 (342)
T ss_dssp             HHHHHHTTCCEEEEEECEEECSCCSSCSTTHHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHHSCT-TCEEEECCE
T ss_pred             HHHHhhcCCcEEEEeCCceECCCCccccHHHHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHhCCCC-CceEEEcCC
Confidence            764   389999999999999875 2   1100   0010    11223588999999999999887654 789999985


Q ss_pred             CCCCCcCHHHHHHHhhc
Q 022216          284 VDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       284 ~~~~~~s~~e~~~~i~~  300 (301)
                         + +++.|+++.+.+
T Consensus       245 ---~-~s~~e~~~~i~~  257 (342)
T 2x4g_A          245 ---N-LEMADLTRRIAE  257 (342)
T ss_dssp             ---E-EEHHHHHHHHHH
T ss_pred             ---c-ccHHHHHHHHHH
Confidence               7 999999998864

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=100.00  E-value=1.7e-33  Score=255.22  Aligned_cols=227  Identities=17%  Similarity=0.052  Sum_probs=181.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .++|+||||||+||||++++++|+++|++|++++|+........   ..++.++.+|++| .+++.+++.+ +|+|||||
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~v~~~~~Dl~d-~~~~~~~~~~-~d~Vih~A  101 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED---MFCDEFHLVDLRV-MENCLKVTEG-VDHVFNLA  101 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG---GTCSEEEECCTTS-HHHHHHHHTT-CSEEEECC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc---cCCceEEECCCCC-HHHHHHHhCC-CCEEEECc
Confidence            35789999999999999999999999999999999876543222   2578999999999 8999999998 99999999


Q ss_pred             CCCC-----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCC-----CCCCcchh-hcchhhHHHHHHH
Q 022216          144 GFQP-----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG-----QILNPAYI-FLNVFGLTLIAKL  212 (301)
Q Consensus       144 g~~~-----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~-----~~~~~~~~-~~~~~~~y~~sK~  212 (301)
                      |...     ..++...+++|+.++.++++++++.++++||++||.++|+....     .+..++.. +..+...|+.+|.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~  181 (379)
T 2c5a_A          102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKL  181 (379)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHH
T ss_pred             eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHHHHH
Confidence            9654     34566678999999999999999999999999999999986432     11222211 3445678999999


Q ss_pred             HHHHHHH----HcCCcEEEEecCcccCCCCCCc--------------------eeeccccccccCCCCHHHHHHHHHHHh
Q 022216          213 QAEQYIR----KSGINYTIIRPGGLRNEPPTGN--------------------IIMETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       213 ~~e~~~~----~~~i~~~~irpg~v~~~~~~~~--------------------~~~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ++|++++    +.|+++++|||++++|+.....                    +...........+++++|+|++++.++
T Consensus       182 ~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l  261 (379)
T 2c5a_A          182 ATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLT  261 (379)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHh
Confidence            9998774    3599999999999999864321                    111112223346899999999999998


Q ss_pred             cCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          269 LHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ..+  .+++||++++   +.+++.|+++.+.+
T Consensus       262 ~~~--~~~~~ni~~~---~~~s~~e~~~~i~~  288 (379)
T 2c5a_A          262 KSD--FREPVNIGSD---EMVSMNEMAEMVLS  288 (379)
T ss_dssp             HSS--CCSCEEECCC---CCEEHHHHHHHHHH
T ss_pred             hcc--CCCeEEeCCC---CccCHHHHHHHHHH
Confidence            876  4678999985   89999999999875

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=100.00  E-value=3.4e-34  Score=255.83  Aligned_cols=230  Identities=17%  Similarity=0.198  Sum_probs=182.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhc--CCCCE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG--DDSEA  138 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~  138 (301)
                      .+|+||||||+||||++++++|+++|++|++++|+.....+....    ...++.++.+|++| .+++.+++.  + +|+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~-~d~   81 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD-ERALARIFDAHP-ITA   81 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTC-HHHHHHHHHHSC-CCE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCC-HHHHHHHHhccC-CcE
Confidence            468999999999999999999999999999999987654432211    24578999999999 899999988  6 999


Q ss_pred             EEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHH
Q 022216          139 VVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       139 Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      ||||||....    .++...+++|+.++.++++++++.++++||++||.++|+.....+..+.. +..+.+.|+.+|.++
T Consensus        82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~-~~~~~~~Y~~sK~~~  160 (341)
T 3enk_A           82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETF-PLSATNPYGQTKLMA  160 (341)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTS-CCBCSSHHHHHHHHH
T ss_pred             EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCC-CCCCCChhHHHHHHH
Confidence            9999997542    23446788999999999999999998999999999999876665555544 345678899999999


Q ss_pred             HHHHHH----c-CCcEEEEecCcccCCCCCC-----------c---------------eeecc------ccccccCCCCH
Q 022216          215 EQYIRK----S-GINYTIIRPGGLRNEPPTG-----------N---------------IIMET------EDTLYEGTISR  257 (301)
Q Consensus       215 e~~~~~----~-~i~~~~irpg~v~~~~~~~-----------~---------------~~~~~------~~~~~~~~v~~  257 (301)
                      |++++.    . +++++++||++++|+...+           .               +...+      ......+++++
T Consensus       161 e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v  240 (341)
T 3enk_A          161 EQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHV  240 (341)
T ss_dssp             HHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEH
T ss_pred             HHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEH
Confidence            988764    3 5999999999999985321           0               00001      22233468999


Q ss_pred             HHHHHHHHHHhcC--CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          258 DQVAEVAVEALLH--PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       258 ~Dva~~~~~~l~~--~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +|+|++++.++..  +...+++||++++   +.+++.|+++.+.+
T Consensus       241 ~Dva~a~~~~~~~~~~~~~~~~~ni~~~---~~~s~~e~~~~i~~  282 (341)
T 3enk_A          241 VDLARGHIAALDALERRDASLTVNLGTG---RGYSVLEVVRAFEK  282 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCcceEEEeCCC---CceeHHHHHHHHHH
Confidence            9999999988876  2356889999985   99999999998875

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=100.00  E-value=1.1e-33  Score=249.92  Aligned_cols=223  Identities=18%  Similarity=0.163  Sum_probs=175.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +|+||||||+||||++++++|+++| .++++.+......+.   ...++.++.+|++|  +++.+++.+ +|+|||+|+.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~---~~~~~~~~~~Dl~~--~~~~~~~~~-~d~vih~a~~   73 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEF---VNEAARLVKADLAA--DDIKDYLKG-AEEVWHIAAN   73 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGG---SCTTEEEECCCTTT--SCCHHHHTT-CSEEEECCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhh---cCCCcEEEECcCCh--HHHHHHhcC-CCEEEECCCC
Confidence            3689999999999999999999999 555555544332222   23678999999997  678888888 9999999985


Q ss_pred             CC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH--
Q 022216          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR--  219 (301)
Q Consensus       146 ~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~--  219 (301)
                      ..    ..++...+++|+.++.++++++++.++++|||+||.++|+.....+..++. +..+.+.|+.+|.++|++++  
T Consensus        74 ~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~-~~~~~~~Y~~sK~~~e~~~~~~  152 (313)
T 3ehe_A           74 PDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDY-PTHPISLYGASKLACEALIESY  152 (313)
T ss_dssp             CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTS-CCCCCSHHHHHHHHHHHHHHHH
T ss_pred             CChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Confidence            42    245567789999999999999999999999999999999877655544443 44567889999999998775  


Q ss_pred             --HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeec
Q 022216          220 --KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       220 --~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~  282 (301)
                        +.|++++++||++++|+.....               +..........++++++|+|++++.++. +...+++||+++
T Consensus       153 ~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~-~~~~~~~~ni~~  231 (313)
T 3ehe_A          153 CHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR-GDERVNIFNIGS  231 (313)
T ss_dssp             HHHTTCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTT-CCSSEEEEECCC
T ss_pred             HHhcCCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhc-cCCCCceEEECC
Confidence              3699999999999999865431               1122223344578999999999988887 444678999998


Q ss_pred             CCCCCCcCHHHHHHHhhc
Q 022216          283 RVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       283 ~~~~~~~s~~e~~~~i~~  300 (301)
                      +   +.+++.|+++.+.+
T Consensus       232 ~---~~~s~~e~~~~i~~  246 (313)
T 3ehe_A          232 E---DQIKVKRIAEIVCE  246 (313)
T ss_dssp             S---CCEEHHHHHHHHHH
T ss_pred             C---CCeeHHHHHHHHHH
Confidence            5   89999999999875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=100.00  E-value=1.2e-33  Score=251.46  Aligned_cols=225  Identities=16%  Similarity=0.222  Sum_probs=179.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~V  139 (301)
                      ..+++|+||||||+||||++++++|+++|++|++++|+.....+... ...++.++.+|++| .+++.+++.  + +|+|
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~l~~v~~~~~Dl~d-~~~~~~~~~~~~-~D~v   92 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP-PVAGLSVIEGSVTD-AGLLERAFDSFK-PTHV   92 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSC-SCTTEEEEECCTTC-HHHHHHHHHHHC-CSEE
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhh-ccCCceEEEeeCCC-HHHHHHHHhhcC-CCEE
Confidence            35678999999999999999999999999999999997654432222 12578999999999 888999998  7 9999


Q ss_pred             EEccCCCCC---CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCC--CCCcchhhcchhhHHHHHHHHH
Q 022216          140 VCATGFQPG---WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ--ILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       140 i~~Ag~~~~---~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~--~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      |||||....   .++.  +++|+.++.++++++++.++++||++||.++|+.....  +..++.   .+...|+.+|.++
T Consensus        93 ih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~---~~~~~Y~~sK~~~  167 (330)
T 2pzm_A           93 VHSAAAYKDPDDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT---APFTSYGISKTAG  167 (330)
T ss_dssp             EECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC---CCCSHHHHHHHHH
T ss_pred             EECCccCCCccccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC---CCCChHHHHHHHH
Confidence            999996543   2233  78999999999999999888999999999999765332  333332   4567899999999


Q ss_pred             HHHHHHcCCcEEEEecCcccCCCCCCcee------------eccccccccCCCCHHHHHH-HHHHHhcCCCCCCcEEEee
Q 022216          215 EQYIRKSGINYTIIRPGGLRNEPPTGNII------------METEDTLYEGTISRDQVAE-VAVEALLHPESSYKVVEII  281 (301)
Q Consensus       215 e~~~~~~~i~~~~irpg~v~~~~~~~~~~------------~~~~~~~~~~~v~~~Dva~-~~~~~l~~~~~~~~~~~v~  281 (301)
                      |++++..++++++|||++++||.....+.            ...... ...+++++|+|+ +++.++..+.  +++||+.
T Consensus       168 e~~~~~~~~~~~~iR~~~v~gp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~~--g~~~~v~  244 (330)
T 2pzm_A          168 EAFLMMSDVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQKCFCSDT-VRDFLDMSDFLAIADLSLQEGRP--TGVFNVS  244 (330)
T ss_dssp             HHHHHTCSSCEEEEEECEEECTTCCSSHHHHHHHHHHTTCCCCEESC-EECEEEHHHHHHHHHHHTSTTCC--CEEEEES
T ss_pred             HHHHHHcCCCEEEEeeeeeECcCCCCCHHHHHHHHHHcCCEEeCCCC-EecceeHHHHHHHHHHHHhhcCC--CCEEEeC
Confidence            99998889999999999999987521110            001111 446899999999 9988887654  8899999


Q ss_pred             cCCCCCCcCHHHHHHHhhc
Q 022216          282 SRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       282 ~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++   +.+++.|+++.+.+
T Consensus       245 ~~---~~~s~~e~~~~i~~  260 (330)
T 2pzm_A          245 TG---EGHSIKEVFDVVLD  260 (330)
T ss_dssp             CS---CCEEHHHHHHHHHH
T ss_pred             CC---CCCCHHHHHHHHHH
Confidence            85   89999999998865

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=100.00  E-value=2.4e-34  Score=250.95  Aligned_cols=221  Identities=19%  Similarity=0.154  Sum_probs=177.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |++|+||||| +||||++++++|+++|++|++++|+.+..       ..++.++.+|++| .+.+.+++.+++|+|||+|
T Consensus         1 M~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~~~~~~~~Dl~d-~~~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            1 MSLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-------PAGVQTLIADVTR-PDTLASIVHLRPEILVYCV   71 (286)
T ss_dssp             -CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-------CTTCCEEECCTTC-GGGCTTGGGGCCSEEEECH
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-------ccCCceEEccCCC-hHHHHHhhcCCCCEEEEeC
Confidence            3578999999 59999999999999999999999987652       3688999999999 7888887765599999999


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCC
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI  223 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i  223 (301)
                      |... .++...+++|+.++.++++++++.++++|||+||.++|+...+.+..+.. +..+.+.|+.+|.++|++ ++. +
T Consensus        72 ~~~~-~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~-~~~-~  147 (286)
T 3gpi_A           72 AASE-YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDT-PPIAKDFSGKRMLEAEAL-LAA-Y  147 (286)
T ss_dssp             HHHH-HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTS-CCCCCSHHHHHHHHHHHH-GGG-S
T ss_pred             CCCC-CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCC-CCCCCChhhHHHHHHHHH-Hhc-C
Confidence            8632 45677889999999999999999899999999999999977655544443 345668899999999999 777 9


Q ss_pred             cEEEEecCcccCCCCCCcee------eccccccccCCCCHHHHHHHHHHHhcCC--CCCCcEEEeecCCCCCCcCHHHHH
Q 022216          224 NYTIIRPGGLRNEPPTGNII------METEDTLYEGTISRDQVAEVAVEALLHP--ESSYKVVEIISRVDAPKRSYEDLF  295 (301)
Q Consensus       224 ~~~~irpg~v~~~~~~~~~~------~~~~~~~~~~~v~~~Dva~~~~~~l~~~--~~~~~~~~v~~~~~~~~~s~~e~~  295 (301)
                      +++++||++++|+.....+.      .........++++++|+|++++.++..+  ...+++||++++   +.+++.|++
T Consensus       148 ~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~e~~  224 (286)
T 3gpi_A          148 SSTILRFSGIYGPGRLRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPERLYIVTDN---QPLPVHDLL  224 (286)
T ss_dssp             SEEEEEECEEEBTTBCHHHHHTTCGGGSCSSBCEECEEEHHHHHHHHHHHHHHHTTSCCCSEEEECCS---CCEEHHHHH
T ss_pred             CeEEEecccccCCCchhHHHHHHhcccCCCcCceeEEEEHHHHHHHHHHHHhhhccCCCCceEEEeCC---CCCCHHHHH
Confidence            99999999999986442110      0122233456899999999999999874  456889999985   899999999


Q ss_pred             HHhhc
Q 022216          296 GSIKQ  300 (301)
Q Consensus       296 ~~i~~  300 (301)
                      +.+.+
T Consensus       225 ~~i~~  229 (286)
T 3gpi_A          225 RWLAD  229 (286)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=100.00  E-value=2.1e-33  Score=248.71  Aligned_cols=223  Identities=14%  Similarity=0.155  Sum_probs=177.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      +.|+||||||+||||++++++|+++|++|++++|+... ..      .++.++.+|++| .+++.+++.+ ++|+|||||
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~------l~~~~~~~Dl~d-~~~~~~~~~~~~~d~vih~A   82 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL------PNVEMISLDIMD-SQRVKKVISDIKPDYIFHLA   82 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC------TTEEEEECCTTC-HHHHHHHHHHHCCSEEEECC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc------ceeeEEECCCCC-HHHHHHHHHhcCCCEEEEcC
Confidence            46899999999999999999999999999999998664 21      178899999999 8888888864 599999999


Q ss_pred             CCCC----CCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEeccccccccc--CCCCCCcchhhcchhhHHHHHHHHHHH
Q 022216          144 GFQP----GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAA--MGQILNPAYIFLNVFGLTLIAKLQAEQ  216 (301)
Q Consensus       144 g~~~----~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~--~~~~~~~~~~~~~~~~~y~~sK~~~e~  216 (301)
                      |...    ..++...+++|+.|+.++++++++. ++++||++||.++|+..  ...+..++. +..+.+.|+.+|.++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~-~~~~~~~Y~~sK~~~E~  161 (321)
T 2pk3_A           83 AKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEEN-QLRPMSPYGVSKASVGM  161 (321)
T ss_dssp             SCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTS-CCBCCSHHHHHHHHHHH
T ss_pred             cccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCC-CCCCCCccHHHHHHHHH
Confidence            9754    2356678899999999999999876 57899999999999865  333333332 33556889999999998


Q ss_pred             HHHH----cCCcEEEEecCcccCCCCCCc--------------------eeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          217 YIRK----SGINYTIIRPGGLRNEPPTGN--------------------IIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       217 ~~~~----~~i~~~~irpg~v~~~~~~~~--------------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +++.    +|++++++||++++||.....                    +...........+++++|+|++++.++..+ 
T Consensus       162 ~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-  240 (321)
T 2pk3_A          162 LARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG-  240 (321)
T ss_dssp             HHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCC-
Confidence            8764    499999999999999875431                    001111122345789999999999888766 


Q ss_pred             CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          273 SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       273 ~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ..+++||+.++   +.+++.|+++.+.+
T Consensus       241 ~~g~~~~i~~~---~~~s~~e~~~~i~~  265 (321)
T 2pk3_A          241 KTGDVYNVCSG---IGTRIQDVLDLLLA  265 (321)
T ss_dssp             CTTCEEEESCS---CEEEHHHHHHHHHH
T ss_pred             CCCCeEEeCCC---CCeeHHHHHHHHHH
Confidence            35789999985   89999999998875

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=100.00  E-value=1e-33  Score=256.57  Aligned_cols=230  Identities=18%  Similarity=0.158  Sum_probs=175.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++|+||||||+||||++++++|+++| ++|++++|+.....+.+. ...++.++.+|++| .+.+.+++.+ +|+|||
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~-~~~~v~~~~~Dl~d-~~~l~~~~~~-~d~Vih  105 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP-DHPAVRFSETSITD-DALLASLQDE-YDYVFH  105 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC-CCTTEEEECSCTTC-HHHHHHCCSC-CSEEEE
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc-CCCceEEEECCCCC-HHHHHHHhhC-CCEEEE
Confidence            3568999999999999999999999999 999999998655332221 24689999999999 8999999998 999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccccccccCCCCCC--cchh--hc-chhhHHHHHH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAMGQILN--PAYI--FL-NVFGLTLIAK  211 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~~~~~~--~~~~--~~-~~~~~y~~sK  211 (301)
                      |||....    .++...+++|+.++.++++++++. ++++||++||.++|+.....+..  +...  +. .+...|+.+|
T Consensus       106 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~sK  185 (377)
T 2q1s_A          106 LATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSK  185 (377)
T ss_dssp             CCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSHHHHHH
T ss_pred             CCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCchHHHH
Confidence            9996542    255667899999999999999998 88999999999999865443333  3321  22 4567899999


Q ss_pred             HHHHHHHHH----cCCcEEEEecCcccCCCC---------CC-----ce--------------eeccccccccCCCCHHH
Q 022216          212 LQAEQYIRK----SGINYTIIRPGGLRNEPP---------TG-----NI--------------IMETEDTLYEGTISRDQ  259 (301)
Q Consensus       212 ~~~e~~~~~----~~i~~~~irpg~v~~~~~---------~~-----~~--------------~~~~~~~~~~~~v~~~D  259 (301)
                      .++|++++.    .|++++++||++++|+..         ..     ..              ...........+++++|
T Consensus       186 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D  265 (377)
T 2q1s_A          186 IFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVED  265 (377)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHH
Confidence            999988753    599999999999999876         21     11              00111223346899999


Q ss_pred             HHHH-HHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          260 VAEV-AVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       260 va~~-~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +|++ ++.++..+. .+ +||+.++   +.+++.|+++.+.+
T Consensus       266 va~a~i~~~~~~~~-~g-~~~i~~~---~~~s~~e~~~~i~~  302 (377)
T 2q1s_A          266 VANGLIACAADGTP-GG-VYNIASG---KETSIADLATKINE  302 (377)
T ss_dssp             HHHHHHHHHHHCCT-TE-EEECCCC---CCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CC-eEEecCC---CceeHHHHHHHHHH
Confidence            9999 988888765 55 9999985   89999999998865

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=100.00  E-value=2.5e-33  Score=249.15  Aligned_cols=226  Identities=16%  Similarity=0.226  Sum_probs=178.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi~~A  143 (301)
                      +|+||||||+||||++++++|+++|++|++++|+.....+..   ..++.++.+|++| .+++.+++.  + +|+|||||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~D~~~-~~~~~~~~~~~~-~d~vih~a   75 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI---TEGAKFYNGDLRD-KAFLRDVFTQEN-IEAVMHFA   75 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS---CTTSEEEECCTTC-HHHHHHHHHHSC-EEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhc---CCCcEEEECCCCC-HHHHHHHHhhcC-CCEEEECC
Confidence            378999999999999999999999999999998765433222   2378999999999 888999988  7 99999999


Q ss_pred             CCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH
Q 022216          144 GFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (301)
Q Consensus       144 g~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (301)
                      |....    .++..++++|+.++.++++++++.++++||++||.++|+.....+..+.. +..+.+.|+.+|.++|++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~-~~~~~~~Y~~sK~~~e~~~~  154 (330)
T 2c20_A           76 ADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEET-MTNPTNTYGETKLAIEKMLH  154 (330)
T ss_dssp             CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTS-CCCCSSHHHHHHHHHHHHHH
T ss_pred             cccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCC-CCCCCChHHHHHHHHHHHHH
Confidence            96542    35566789999999999999999998999999999999866544444433 23556889999999998875


Q ss_pred             H----cCCcEEEEecCcccCCCCCC----------ce---------------eecc------ccccccCCCCHHHHHHHH
Q 022216          220 K----SGINYTIIRPGGLRNEPPTG----------NI---------------IMET------EDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       220 ~----~~i~~~~irpg~v~~~~~~~----------~~---------------~~~~------~~~~~~~~v~~~Dva~~~  264 (301)
                      .    .+++++++||++++|+...+          .+               ...+      .......+++++|+|+++
T Consensus       155 ~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~  234 (330)
T 2c20_A          155 WYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAH  234 (330)
T ss_dssp             HHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHH
T ss_pred             HHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHH
Confidence            4    58999999999999985211          10               0000      112234689999999999


Q ss_pred             HHHhcCCCC--CCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          265 VEALLHPES--SYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       265 ~~~l~~~~~--~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.++..+..  .+++||++++   +.+++.|+++.+.+
T Consensus       235 ~~~~~~~~~~~~~~~~ni~~~---~~~s~~e~~~~i~~  269 (330)
T 2c20_A          235 FLGLKDLQNGGESDFYNLGNG---NGFSVKEIVDAVRE  269 (330)
T ss_dssp             HHHHHHHHTTCCCEEEECCCT---TCBCHHHHHHHHHH
T ss_pred             HHHHhccccCCCCCeEEeCCC---CCccHHHHHHHHHH
Confidence            988876432  3689999885   89999999998865

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=100.00  E-value=5.4e-33  Score=248.24  Aligned_cols=227  Identities=15%  Similarity=0.189  Sum_probs=179.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      |+||||||+||||++++++|+++ |++|++++|+..+...+.  ...++.++.+|++|..+.+.+++.+ +|+||||||.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~-~d~vih~A~~   77 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL--NHPHFHFVEGDISIHSEWIEYHVKK-CDVVLPLVAI   77 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT--TCTTEEEEECCTTTCSHHHHHHHHH-CSEEEECBCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh--cCCCeEEEeccccCcHHHHHhhccC-CCEEEEcccc
Confidence            58999999999999999999998 899999999887665443  2357999999999844668888888 9999999996


Q ss_pred             CCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh------hcchhhHHHHHHHHHH
Q 022216          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI------FLNVFGLTLIAKLQAE  215 (301)
Q Consensus       146 ~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~------~~~~~~~y~~sK~~~e  215 (301)
                      ...    .++...+++|+.++.++++++++.+ ++||++||.++|+.....+..+...      ...+.+.|+.+|.++|
T Consensus        78 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e  156 (345)
T 2bll_A           78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD  156 (345)
T ss_dssp             CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred             cCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHHH
Confidence            542    3455678899999999999999988 8999999999998765443333321      1235568999999999


Q ss_pred             HHHH----HcCCcEEEEecCcccCCCCCC---------c--------------eeeccccccccCCCCHHHHHHHHHHHh
Q 022216          216 QYIR----KSGINYTIIRPGGLRNEPPTG---------N--------------IIMETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       216 ~~~~----~~~i~~~~irpg~v~~~~~~~---------~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ++++    +.+++++++||++++|+....         .              +...........+++++|+|++++.++
T Consensus       157 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~  236 (345)
T 2bll_A          157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII  236 (345)
T ss_dssp             HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHH
Confidence            8874    469999999999999986431         0              011111222346899999999999998


Q ss_pred             cCCC--CCCcEEEeecCCCCC-CcCHHHHHHHhhc
Q 022216          269 LHPE--SSYKVVEIISRVDAP-KRSYEDLFGSIKQ  300 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~~~~~-~~s~~e~~~~i~~  300 (301)
                      ..+.  ..+++||+.++   + .+++.|+++.+++
T Consensus       237 ~~~~~~~~g~~~~i~~~---~~~~s~~e~~~~i~~  268 (345)
T 2bll_A          237 ENAGNRCDGEIINIGNP---ENEASIEELGEMLLA  268 (345)
T ss_dssp             HCGGGTTTTEEEEECCT---TSEEEHHHHHHHHHH
T ss_pred             hhccccCCCceEEeCCC---CCCCCHHHHHHHHHH
Confidence            8764  46789999984   5 7999999998864

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=100.00  E-value=2.4e-33  Score=252.06  Aligned_cols=234  Identities=17%  Similarity=0.097  Sum_probs=179.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC-CCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi  140 (301)
                      +++|+||||||+||||++++++|+++|++|++++|+..+.......  ...++.++.+|++| .+++.+++.+ ++|+||
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vi   85 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD-QNKLLESIREFQPEIVF   85 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccC-HHHHHHHHHhcCCCEEE
Confidence            4689999999999999999999999999999999987654432211  23578999999999 8888888875 489999


Q ss_pred             EccCCCC----CCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCC-CCCCcchhhcchhhHHHHHHHHH
Q 022216          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMG-QILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       141 ~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~-~~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      ||||...    ..++...+++|+.|+.++++++++.+ +++||++||.++|+.... .+..+. .+..+.+.|+.+|.++
T Consensus        86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-~~~~~~~~Y~~sK~~~  164 (357)
T 1rkx_A           86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-EAMGGYDPYSNSKGCA  164 (357)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-SCBCCSSHHHHHHHHH
T ss_pred             ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-CCCCCCCccHHHHHHH
Confidence            9999642    23456678999999999999999876 789999999999986543 122222 2344567899999999


Q ss_pred             HHHHHHc-------------CCcEEEEecCcccCCCCCC--ce-------------eeccccccccCCCCHHHHHHHHHH
Q 022216          215 EQYIRKS-------------GINYTIIRPGGLRNEPPTG--NI-------------IMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       215 e~~~~~~-------------~i~~~~irpg~v~~~~~~~--~~-------------~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      |++++..             |++++++||++++||....  .+             ..........++++++|+|++++.
T Consensus       165 e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~Dva~a~~~  244 (357)
T 1rkx_A          165 ELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLL  244 (357)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCCCeeccEeHHHHHHHHHH
Confidence            9887532             9999999999999986421  11             111112233468999999999988


Q ss_pred             HhcC----CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLH----PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~----~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++..    +...+++||++++ .++.+++.|+++.+.+
T Consensus       245 ~~~~~~~~~~~~~~~~ni~~~-~~~~~s~~e~~~~i~~  281 (357)
T 1rkx_A          245 LAQKLYTDGAEYAEGWNFGPN-DADATPVKNIVEQMVK  281 (357)
T ss_dssp             HHHHHHHTCGGGCSEEECCCC-GGGCEEHHHHHHHHHH
T ss_pred             HHHhhhhcCCCCCceEEECCC-CCCcccHHHHHHHHHH
Confidence            8863    2345789999862 1268999999998864

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=100.00  E-value=7.5e-33  Score=236.53  Aligned_cols=221  Identities=28%  Similarity=0.401  Sum_probs=175.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      ++|+||||||+|+||++++++|+++  |++|++++|++++.+.+    ..++.++.+|++| .+++.+++++ +|+||||
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~D~~d-~~~~~~~~~~-~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI----GGEADVFIGDITD-ADSINPAFQG-IDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT----TCCTTEEECCTTS-HHHHHHHHTT-CSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc----CCCeeEEEecCCC-HHHHHHHHcC-CCEEEEe
Confidence            5789999999999999999999999  89999999987665543    3578899999999 8999999999 9999999


Q ss_pred             cCCCCC-----------------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchh-
Q 022216          143 TGFQPG-----------------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF-  204 (301)
Q Consensus       143 Ag~~~~-----------------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~-  204 (301)
                      ||....                 +++...+++|+.++.++++++++.++++||++||.+++....         +..++ 
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~~---------~~~~~~  147 (253)
T 1xq6_A           77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDH---------PLNKLG  147 (253)
T ss_dssp             CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTC---------GGGGGG
T ss_pred             ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCCC---------cccccc
Confidence            986431                 112245689999999999999999989999999997652111         11222 


Q ss_pred             -hHHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCc-eeecccccc---ccCCCCHHHHHHHHHHHhcCCCCCCcEEE
Q 022216          205 -GLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGN-IIMETEDTL---YEGTISRDQVAEVAVEALLHPESSYKVVE  279 (301)
Q Consensus       205 -~~y~~sK~~~e~~~~~~~i~~~~irpg~v~~~~~~~~-~~~~~~~~~---~~~~v~~~Dva~~~~~~l~~~~~~~~~~~  279 (301)
                       ..|..+|.++|+++++.++++++||||+++|+..... .........   ...+++++|+|++++.++.++...+++|+
T Consensus       148 ~~~y~~sK~~~e~~~~~~~i~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dva~~~~~~~~~~~~~g~~~~  227 (253)
T 1xq6_A          148 NGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFD  227 (253)
T ss_dssp             GCCHHHHHHHHHHHHHTSSSCEEEEEECEEECSCSSSSCEEEESTTGGGGSSCCEEEHHHHHHHHHHHTTCGGGTTEEEE
T ss_pred             chhHHHHHHHHHHHHHhCCCceEEEecceeecCCcchhhhhccCCcCCcCCCCcEEcHHHHHHHHHHHHcCccccCCEEE
Confidence             3588899999999998999999999999999864322 111111111   12478999999999999988766688999


Q ss_pred             eecCCCCCCcCHHHHHHHhhc
Q 022216          280 IISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       280 v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.+++.++.+++.|+++.+++
T Consensus       228 i~~~~~~~~~s~~e~~~~~~~  248 (253)
T 1xq6_A          228 LGSKPEGTSTPTKDFKALFSQ  248 (253)
T ss_dssp             EEECCTTTSCCCCCHHHHHHT
T ss_pred             ecCCCcCCCCCHHHHHHHHHH
Confidence            998644467999999998876

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.2e-33  Score=246.76  Aligned_cols=229  Identities=17%  Similarity=0.133  Sum_probs=177.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCc--hhhhccc-cCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLD--KAKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~--~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      ++|+||||||+||||++++++|+++|  ++|++++|...  ..+.+.. ....++.++.+|++| .+++.+++.+ +|+|
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~v   79 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVAD-YELVKELVRK-VDGV   79 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC-HHHHHHHHHT-CSEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCC-HHHHHHHhhC-CCEE
Confidence            46889999999999999999999997  89999998642  2222211 013578999999999 8999999988 9999


Q ss_pred             EEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHH
Q 022216          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       140 i~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~  214 (301)
                      |||||....    .++..++++|+.|+.++++++++.+. ++||++||.++||.....+..+.. +..+.+.|+.+|.++
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~-~~~~~~~Y~~sK~~~  158 (336)
T 2hun_A           80 VHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEND-RLMPSSPYSATKAAS  158 (336)
T ss_dssp             EECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTB-CCCCCSHHHHHHHHH
T ss_pred             EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCC-CCCCCCccHHHHHHH
Confidence            999997542    35667889999999999999998764 799999999999865443433332 334567899999999


Q ss_pred             HHHHHH----cCCcEEEEecCcccCCCCCCc-e--------------eeccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          215 EQYIRK----SGINYTIIRPGGLRNEPPTGN-I--------------IMETEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       215 e~~~~~----~~i~~~~irpg~v~~~~~~~~-~--------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      |++++.    .+++++++||++++|+..... +              ...........+++++|+|++++.++..+. .+
T Consensus       159 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-~g  237 (336)
T 2hun_A          159 DMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE-SR  237 (336)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCC-TT
T ss_pred             HHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCC-CC
Confidence            987753    699999999999999875321 0              111112223468899999999988887654 57


Q ss_pred             cEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          276 KVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       276 ~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++||+.++   +.+++.|+++.+.+
T Consensus       238 ~~~~v~~~---~~~s~~e~~~~i~~  259 (336)
T 2hun_A          238 EIYNISAG---EEKTNLEVVKIILR  259 (336)
T ss_dssp             CEEEECCS---CEECHHHHHHHHHH
T ss_pred             CEEEeCCC---CcccHHHHHHHHHH
Confidence            89999985   88999999998864

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=100.00  E-value=6.8e-33  Score=239.62  Aligned_cols=204  Identities=20%  Similarity=0.195  Sum_probs=170.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++|+||||||+||||++++++|+++|++|++++|++.+..      ..++.++.+|++| .+++.+++.+ +|+||||||
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------~~~~~~~~~Dl~d-~~~~~~~~~~-~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------GPNEECVQCDLAD-ANAVNAMVAG-CDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------CTTEEEEECCTTC-HHHHHHHHTT-CSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------CCCCEEEEcCCCC-HHHHHHHHcC-CCEEEECCC
Confidence            4689999999999999999999999999999999876533      4689999999999 8999999999 999999999


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH----H
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----K  220 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~  220 (301)
                      .....+++..+++|+.|++++++++++.+.++||++||..+|+.........+..+..+...|+.+|.++|.+++    +
T Consensus        74 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~  153 (267)
T 3rft_A           74 ISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDK  153 (267)
T ss_dssp             CCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            877777888899999999999999999998999999999999744322112222344566889999999998774    5


Q ss_pred             cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 022216          221 SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRV  284 (301)
Q Consensus       221 ~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~  284 (301)
                      +++++++|||+.++++....        .....+++++|+++++..++..+.....++++.+++
T Consensus       154 ~g~~~~~vr~~~v~~~~~~~--------~~~~~~~~~~d~a~~~~~~~~~~~~~~~~~~~~s~~  209 (267)
T 3rft_A          154 FGQETALVRIGSCTPEPNNY--------RMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASAN  209 (267)
T ss_dssp             HCCCEEEEEECBCSSSCCST--------THHHHBCCHHHHHHHHHHHHHCSCCCSCEEEECCCC
T ss_pred             hCCeEEEEEeecccCCCCCC--------CceeeEEcHHHHHHHHHHHHhCCCCCceEEEEeCCC
Confidence            79999999999999875332        223458999999999999998887767788888763

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=100.00  E-value=2e-32  Score=244.11  Aligned_cols=227  Identities=16%  Similarity=0.124  Sum_probs=178.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC---C---CeEEEEEeCCch--hhhccc-cCCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK---G---FAVKAGVRDLDK--AKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~---G---~~V~~~~r~~~~--~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |+||||||+||||++++++|+++   |   ++|++++|....  .+.+.. ....++.++.+|++| .+++.+++.+ +|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d   78 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRD-AGLLARELRG-VD   78 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTC-HHHHHHHTTT-CC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCC-HHHHHHHhcC-CC
Confidence            57999999999999999999997   8   999999986521  111111 023578999999999 8999999988 99


Q ss_pred             EEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHH
Q 022216          138 AVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (301)
Q Consensus       138 ~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (301)
                      +||||||....    .++..++++|+.++.++++++++.++++||++||.++|+.....+..+.. +..+.+.|+.+|.+
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-~~~~~~~Y~~sK~~  157 (337)
T 1r6d_A           79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESS-PLEPNSPYAASKAG  157 (337)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTS-CCCCCSHHHHHHHH
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCC-CCCCCCchHHHHHH
Confidence            99999996542    35667889999999999999999998999999999999865443333332 33456789999999


Q ss_pred             HHHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          214 AEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       214 ~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      +|++++    +.+++++++||++++|+.....               +...........+++++|+|++++.++..+. .
T Consensus       158 ~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~  236 (337)
T 1r6d_A          158 SDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-A  236 (337)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCCC-C
Confidence            998775    3699999999999999875321               1111112223468899999999998887654 5


Q ss_pred             CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          275 YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       275 ~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++||+.++   +.+++.|+++.+.+
T Consensus       237 g~~~~v~~~---~~~s~~e~~~~i~~  259 (337)
T 1r6d_A          237 GEIYHIGGG---LELTNRELTGILLD  259 (337)
T ss_dssp             TCEEEECCC---CEEEHHHHHHHHHH
T ss_pred             CCEEEeCCC---CCccHHHHHHHHHH
Confidence            789999985   88999999998864

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=100.00  E-value=1.6e-32  Score=244.57  Aligned_cols=224  Identities=21%  Similarity=0.287  Sum_probs=174.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|+||||||+||||++++++|+++|++|++++|+.....+... ...++.++.+|++| .+++.+++.+ ++|+|||
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~-~~~~~~~~~~Dl~d-~~~~~~~~~~~~~D~vih   95 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLK-DHPNLTFVEGSIAD-HALVNQLIGDLQPDAVVH   95 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSC-CCTTEEEEECCTTC-HHHHHHHHHHHCCSEEEE
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHh-hcCCceEEEEeCCC-HHHHHHHHhccCCcEEEE
Confidence            4568999999999999999999999999999999998654332221 11578999999999 8888888764 5999999


Q ss_pred             ccCCCCC---CCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc----ccCCCCCCcchhhcchh-hHHHHHHHH
Q 022216          142 ATGFQPG---WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG----AAMGQILNPAYIFLNVF-GLTLIAKLQ  213 (301)
Q Consensus       142 ~Ag~~~~---~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~----~~~~~~~~~~~~~~~~~-~~y~~sK~~  213 (301)
                      |||....   .++.  +++|+.++.++++++++.++++||++||.++|+    .... +..+..   .+. ..|+.+|.+
T Consensus        96 ~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~---~p~~~~Y~~sK~~  169 (333)
T 2q1w_A           96 TAASYKDPDDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR---NPANSSYAISKSA  169 (333)
T ss_dssp             CCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC---CCTTCHHHHHHHH
T ss_pred             CceecCCCccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC---CCCCCchHHHHHH
Confidence            9996543   1222  789999999999999999889999999999997    4333 333332   345 789999999


Q ss_pred             HHHHHHH-cCCcEEEEecCcccCCCCCCcee-------eccc----cccccCCCCHHHHHHHHHHHhcCCCCCCcEEEee
Q 022216          214 AEQYIRK-SGINYTIIRPGGLRNEPPTGNII-------METE----DTLYEGTISRDQVAEVAVEALLHPESSYKVVEII  281 (301)
Q Consensus       214 ~e~~~~~-~~i~~~~irpg~v~~~~~~~~~~-------~~~~----~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~  281 (301)
                      +|++++. .. +++++||++++||.....+.       ....    ......+++++|+|++++.++..+.  +++||+.
T Consensus       170 ~E~~~~~s~~-~~~ilR~~~v~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~--g~~~~v~  246 (333)
T 2q1w_A          170 NEDYLEYSGL-DFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVG--HGAYHFS  246 (333)
T ss_dssp             HHHHHHHHTC-CEEEEEESEEESTTCCSSHHHHHHHHHHTTCCCEEEECEECEEEHHHHHHHHHHHHTTCC--CEEEECS
T ss_pred             HHHHHHhhhC-CeEEEeeceEECcCCcCcHHHHHHHHHHcCCeeeCCCceEeeEEHHHHHHHHHHHHhcCC--CCEEEeC
Confidence            9999987 66 99999999999987321110       0000    1223468999999999998888765  7899998


Q ss_pred             cCCCCCCcCHHHHHHHhhc
Q 022216          282 SRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       282 ~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++   +.+++.|+++.+.+
T Consensus       247 ~~---~~~s~~e~~~~i~~  262 (333)
T 2q1w_A          247 SG---TDVAIKELYDAVVE  262 (333)
T ss_dssp             CS---CCEEHHHHHHHHHH
T ss_pred             CC---CCccHHHHHHHHHH
Confidence            85   89999999998865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=100.00  E-value=1.7e-31  Score=221.32  Aligned_cols=203  Identities=21%  Similarity=0.299  Sum_probs=163.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++|+||||||+|+||++++++|+++|++|++++|++++....   ...+++++.+|++| .+++.+++++ +|+||||||
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~~D~~~-~~~~~~~~~~-~d~vi~~a~   76 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE---GPRPAHVVVGDVLQ-AADVDKTVAG-QDAVIVLLG   76 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS---SCCCSEEEESCTTS-HHHHHHHHTT-CSEEEECCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc---cCCceEEEEecCCC-HHHHHHHHcC-CCEEEECcc
Confidence            358999999999999999999999999999999987765432   14678999999999 8999999999 999999999


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGIN  224 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~  224 (301)
                      .....+   ..++|+.++.++++++++.++++||++||..+|+.....+        .+...|+.+|.++|+++++.+++
T Consensus        77 ~~~~~~---~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~--------~~~~~y~~~K~~~e~~~~~~~i~  145 (206)
T 1hdo_A           77 TRNDLS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP--------PRLQAVTDDHIRMHKVLRESGLK  145 (206)
T ss_dssp             CTTCCS---CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSC--------GGGHHHHHHHHHHHHHHHHTCSE
T ss_pred             CCCCCC---ccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccccc--------ccchhHHHHHHHHHHHHHhCCCC
Confidence            654423   2468999999999999999999999999999887543221        14678999999999999999999


Q ss_pred             EEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          225 YTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       225 ~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      ++++||+++......+.+...........+++++|+|++++.++.++...+++|++.++
T Consensus       146 ~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~g  204 (206)
T 1hdo_A          146 YVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQ  204 (206)
T ss_dssp             EEEECCSEEECCCCCSCCEEESSSCSSCSEEEHHHHHHHHHHTTSCSTTTTCEEEEECC
T ss_pred             EEEEeCCcccCCCCCcceEecccCCCCCCccCHHHHHHHHHHHhcCccccccceeeecc
Confidence            99999999843322333222111111146899999999999999887777899999874

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=100.00  E-value=2e-32  Score=243.74  Aligned_cols=229  Identities=14%  Similarity=0.054  Sum_probs=179.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh--hccc-cCCCCeEEEEccCCCChHhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--TTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~--~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi  140 (301)
                      .+|+||||||+||||++++++|+++|++|++++|+.....  .+.. ....++.++.+|++| .+++.+++.+ ++|+||
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~Vi   91 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD-ACSVQRAVIKAQPQEVY   91 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCC-HHHHHHHHHHcCCCEEE
Confidence            4789999999999999999999999999999999875421  1100 023578999999999 8888888875 479999


Q ss_pred             EccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH
Q 022216          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       141 ~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (301)
                      ||||...    ..++...+++|+.++.++++++++.++ ++||++||.++|+.....+..++. +..+.+.|+.+|.++|
T Consensus        92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~-~~~p~~~Y~~sK~~~e  170 (335)
T 1rpn_A           92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENT-PFYPRSPYGVAKLYGH  170 (335)
T ss_dssp             ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTS-CCCCCSHHHHHHHHHH
T ss_pred             ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCccc-CCCCCChhHHHHHHHH
Confidence            9999654    245566789999999999999999886 899999999999876554444432 3355678999999999


Q ss_pred             HHHHH----cCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          216 QYIRK----SGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       216 ~~~~~----~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ++++.    .+++++++||++++||......                   ...+.......+++++|+|++++.++..+.
T Consensus       171 ~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~  250 (335)
T 1rpn_A          171 WITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK  250 (335)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCC
Confidence            88754    5999999999999998643211                   011111233468999999999999998765


Q ss_pred             CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          273 SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       273 ~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                        +++||++++   +.+++.|+++.+.+
T Consensus       251 --~~~~ni~~~---~~~s~~e~~~~i~~  273 (335)
T 1rpn_A          251 --ADDYVVATG---VTTTVRDMCQIAFE  273 (335)
T ss_dssp             --CCCEEECCS---CEEEHHHHHHHHHH
T ss_pred             --CCEEEEeCC---CCccHHHHHHHHHH
Confidence              478999985   88999999999875

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=100.00  E-value=7.4e-33  Score=247.84  Aligned_cols=229  Identities=18%  Similarity=0.182  Sum_probs=176.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch------h----hhccccCCCCeEEEEccCCCChHhHHHHhc--
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK------A----KTTLSKDNPSLQIVKADVTEGSAKLSEAIG--  133 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~------~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--  133 (301)
                      +|+||||||+||||++++++|+++|++|++++|....      .    +++......++.++.+|++| .+++.+++.  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILD-QGALQRLFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCC-HHHHHHHHHhc
Confidence            4799999999999999999999999999999886432      1    11110013578999999999 888999888  


Q ss_pred             CCCCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcch-hhHHH
Q 022216          134 DDSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTL  208 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~-~~~y~  208 (301)
                      + +|+||||||....    .++...+++|+.++.++++++++.++++||++||.++|+.....+..++.+. .+ ...|+
T Consensus        81 ~-~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~-~p~~~~Y~  158 (348)
T 1ek6_A           81 S-FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPT-GGCTNPYG  158 (348)
T ss_dssp             C-EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSSHHH
T ss_pred             C-CCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCC-CCCCCchH
Confidence            6 9999999996532    3556678999999999999999999899999999999987554444444322 33 67899


Q ss_pred             HHHHHHHHHHHH---cC--CcEEEEecCcccCCCCC-----------Cce---------------eecc------ccccc
Q 022216          209 IAKLQAEQYIRK---SG--INYTIIRPGGLRNEPPT-----------GNI---------------IMET------EDTLY  251 (301)
Q Consensus       209 ~sK~~~e~~~~~---~~--i~~~~irpg~v~~~~~~-----------~~~---------------~~~~------~~~~~  251 (301)
                      .+|.++|++++.   .+  ++++++||++++|+...           ..+               ....      .....
T Consensus       159 ~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~  238 (348)
T 1ek6_A          159 KSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV  238 (348)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCE
T ss_pred             HHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCceE
Confidence            999999988754   24  99999999999998421           000               0000      11223


Q ss_pred             cCCCCHHHHHHHHHHHhcCCC--CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          252 EGTISRDQVAEVAVEALLHPE--SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       252 ~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .++++++|+|++++.++..+.  ..+++||++++   +.+++.|+++.+.+
T Consensus       239 ~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~---~~~s~~e~~~~i~~  286 (348)
T 1ek6_A          239 RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTG---TGYSVLQMVQAMEK  286 (348)
T ss_dssp             ECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCS---CCEEHHHHHHHHHH
T ss_pred             EeeEEHHHHHHHHHHHHhcccccCCceEEEeCCC---CCccHHHHHHHHHH
Confidence            468999999999998887642  23489999985   89999999998865

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=100.00  E-value=7.2e-33  Score=244.37  Aligned_cols=222  Identities=18%  Similarity=0.281  Sum_probs=174.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi~~Ag  144 (301)
                      |+||||||+||||++++++|+++|++|++++|......+..   ..++.++.+|++| .+++.+++.  + +|+|||+|+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~Dl~~-~~~~~~~~~~~~-~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV---PKGVPFFRVDLRD-KEGVERAFREFR-PTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGS---CTTCCEECCCTTC-HHHHHHHHHHHC-CSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhc---ccCeEEEECCCCC-HHHHHHHHHhcC-CCEEEECcc
Confidence            57999999999999999999999999999988543322211   2467889999999 888988887  6 999999998


Q ss_pred             CCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc-ccccc-cCCCCCCcchhhcchhhHHHHHHHHHHHHH
Q 022216          145 FQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI-LVNGA-AMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (301)
Q Consensus       145 ~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~-~~~~~-~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (301)
                      ....    .++...+++|+.|+.++++++++.++++||++||. ++|+. ....+..+.. +..+...|+.+|.++|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~-~~~~~~~Y~~sK~~~e~~~  154 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETW-PPRPKSPYAASKAAFEHYL  154 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTS-CCCCCSHHHHHHHHHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCC-CCCCCChHHHHHHHHHHHH
Confidence            6532    35566789999999999999999888999999999 88876 3333333332 2345678999999999877


Q ss_pred             H----HcCCcEEEEecCcccCCCCCCc------------------eeec-----cccccccCCCCHHHHHHHHHHHhcCC
Q 022216          219 R----KSGINYTIIRPGGLRNEPPTGN------------------IIME-----TEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       219 ~----~~~i~~~~irpg~v~~~~~~~~------------------~~~~-----~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      +    +.|++++++||++++||.....                  +...     ........+++++|+|++++.++..+
T Consensus       155 ~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~  234 (311)
T 2p5y_A          155 SVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL  234 (311)
T ss_dssp             HHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC
Confidence            5    3699999999999999864321                  0111     12223346899999999998888764


Q ss_pred             CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          272 ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                         +++||++++   +.+++.|+++.+.+
T Consensus       235 ---~~~~~i~~~---~~~s~~e~~~~i~~  257 (311)
T 2p5y_A          235 ---EGIYNVGTG---EGHTTREVLMAVAE  257 (311)
T ss_dssp             ---CEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             ---CCEEEeCCC---CCccHHHHHHHHHH
Confidence               779999985   89999999998865

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=100.00  E-value=8.2e-33  Score=244.88  Aligned_cols=214  Identities=15%  Similarity=0.154  Sum_probs=171.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi~~  142 (301)
                      .+|+||||||+|+||++++++|+++|++|+++.|+.                 .+|++| .+++.+++.  + +|+|||+
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------~~D~~d-~~~~~~~~~~~~-~d~vih~   62 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------ELNLLD-SRAVHDFFASER-IDQVYLA   62 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------TCCTTC-HHHHHHHHHHHC-CSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------cCCccC-HHHHHHHHHhcC-CCEEEEc
Confidence            468999999999999999999999999999887652                 279999 889999998  7 9999999


Q ss_pred             cCCCCC-----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh---hcch-hhHHHHHHHH
Q 022216          143 TGFQPG-----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI---FLNV-FGLTLIAKLQ  213 (301)
Q Consensus       143 Ag~~~~-----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~---~~~~-~~~y~~sK~~  213 (301)
                      |+....     .++...+++|+.++.++++++++.++++|||+||.++|+.....+..+...   +..+ .+.|+.+|.+
T Consensus        63 a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~  142 (321)
T 1e6u_A           63 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIA  142 (321)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHH
T ss_pred             CeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHHHHHH
Confidence            997541     345567889999999999999999999999999999998765555444431   2334 3689999999


Q ss_pred             HHHHHHH----cCCcEEEEecCcccCCCCCC-----c-------------------eeeccccccccCCCCHHHHHHHHH
Q 022216          214 AEQYIRK----SGINYTIIRPGGLRNEPPTG-----N-------------------IIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       214 ~e~~~~~----~~i~~~~irpg~v~~~~~~~-----~-------------------~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      +|++++.    .+++++++||++++|+....     .                   +...........+++++|+|++++
T Consensus       143 ~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~  222 (321)
T 1e6u_A          143 GIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASI  222 (321)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHH
Confidence            9988764    59999999999999986541     1                   111112223346899999999999


Q ss_pred             HHhcCCCCC--------CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          266 EALLHPESS--------YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       266 ~~l~~~~~~--------~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .++..+...        +++||++++   +.+++.|+++.+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~ni~~~---~~~s~~e~~~~i~~  262 (321)
T 1e6u_A          223 HVMELAHEVWLENTQPMLSHINVGTG---VDCTIRELAQTIAK  262 (321)
T ss_dssp             HHHHSCHHHHHHTSBTTBCCEEESCS---CCEEHHHHHHHHHH
T ss_pred             HHHhCcccccccccccCCceEEeCCC---CCccHHHHHHHHHH
Confidence            999877542        689999985   89999999998865

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=100.00  E-value=2.8e-32  Score=244.12  Aligned_cols=227  Identities=15%  Similarity=0.095  Sum_probs=177.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCCch--hhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDK--AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +|+||||||+||||++++++|+++  |++|++++|+...  .+.+......++.++.+|++| .+++.+++.+ +|+|||
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vih   81 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD-AELVDKLAAK-ADAIVH   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTC-HHHHHHHHTT-CSEEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCC-HHHHHHHhhc-CCEEEE
Confidence            579999999999999999999999  8999999997532  111111123688999999999 8999999999 999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCC------------CCCCcchhhcchhh
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG------------QILNPAYIFLNVFG  205 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~------------~~~~~~~~~~~~~~  205 (301)
                      |||....    .++...+++|+.|+.++++++++.++ +||++||.++|+....            .+..+. .+..+.+
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-~~~~~~~  159 (348)
T 1oc2_A           82 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-TNYNPSS  159 (348)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-SCCCCCS
T ss_pred             CCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCC-CCCCCCC
Confidence            9997542    35677889999999999999999887 9999999999986432            222222 2334567


Q ss_pred             HHHHHHHHHHHHHHH----cCCcEEEEecCcccCCCCCCc-e--------------eeccccccccCCCCHHHHHHHHHH
Q 022216          206 LTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPTGN-I--------------IMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       206 ~y~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~~~-~--------------~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      .|+.+|.++|++++.    .|++++++||++++|+..... +              ...........+++++|+|++++.
T Consensus       160 ~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~  239 (348)
T 1oc2_A          160 PYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWA  239 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHH
Confidence            899999999987753    599999999999999875321 1              011112223468999999999998


Q ss_pred             HhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++..+. .+++||+.++   ..+++.|+++.+.+
T Consensus       240 ~~~~~~-~g~~~~i~~~---~~~s~~e~~~~i~~  269 (348)
T 1oc2_A          240 ILTKGR-MGETYLIGAD---GEKNNKEVLELILE  269 (348)
T ss_dssp             HHHHCC-TTCEEEECCS---CEEEHHHHHHHHHH
T ss_pred             HhhCCC-CCCeEEeCCC---CCCCHHHHHHHHHH
Confidence            887653 5789999985   89999999998864

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=100.00  E-value=6.7e-33  Score=244.31  Aligned_cols=220  Identities=13%  Similarity=0.069  Sum_probs=171.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      ++++|+||||||+|+||++++++|+++|+      +...        ....+.++.+|++| .+.+.+++.+ ++|+|||
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~--------~~~~~~~~~~D~~d-~~~~~~~~~~~~~d~Vih   67 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE--------DWVFVSSKDADLTD-TAQTRALFEKVQPTHVIH   67 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC--------EEEECCTTTCCTTS-HHHHHHHHHHSCCSEEEE
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc--------cccccCceecccCC-HHHHHHHHhhcCCCEEEE
Confidence            46789999999999999999999999998      1111        11234455799999 8889888875 5999999


Q ss_pred             ccCCCC-----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh---hcchhh-HHHHHHH
Q 022216          142 ATGFQP-----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI---FLNVFG-LTLIAKL  212 (301)
Q Consensus       142 ~Ag~~~-----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~---~~~~~~-~y~~sK~  212 (301)
                      ||+...     ..++...+++|+.|+.++++++++.++++|||+||.++|+.....+..++..   +..+.. .|+.+|.
T Consensus        68 ~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~  147 (319)
T 4b8w_A           68 LAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKR  147 (319)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHHHH
T ss_pred             CceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHHHHH
Confidence            999754     2355567899999999999999999999999999999998876666555542   222333 6999999


Q ss_pred             HHHHHHHH----cCCcEEEEecCcccCCCCCCc-----------------------eeeccccccccCCCCHHHHHHHHH
Q 022216          213 QAEQYIRK----SGINYTIIRPGGLRNEPPTGN-----------------------IIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       213 ~~e~~~~~----~~i~~~~irpg~v~~~~~~~~-----------------------~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      ++|++++.    .+++++++||++++||.....                       +...........+++++|+|++++
T Consensus       148 ~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~  227 (319)
T 4b8w_A          148 MIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFI  227 (319)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHH
Confidence            99987753    799999999999999865321                       111122233346899999999999


Q ss_pred             HHhcCCC-CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          266 EALLHPE-SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       266 ~~l~~~~-~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .++..+. ..+++||++++   +.+++.|+++.+.+
T Consensus       228 ~~~~~~~~~~~~~~ni~~~---~~~s~~e~~~~i~~  260 (319)
T 4b8w_A          228 WVLREYNEVEPIILSVGEE---DEVSIKEAAEAVVE  260 (319)
T ss_dssp             HHHHHCCCSSCEEECCCGG---GCEEHHHHHHHHHH
T ss_pred             HHHhccccCCceEEEecCC---CceeHHHHHHHHHH
Confidence            9998743 45679999985   99999999999875

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=100.00  E-value=5.3e-33  Score=245.01  Aligned_cols=223  Identities=13%  Similarity=0.139  Sum_probs=175.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi~  141 (301)
                      +|+||||||+||||++++++|+++  |++|++++|+..... ..    .++.++.+|++| .+++.+++.  + +|+|||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~----~~~~~~~~D~~d-~~~~~~~~~~~~-~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-VV----NSGPFEVVNALD-FNQIEHLVEVHK-ITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-HH----HSSCEEECCTTC-HHHHHHHHHHTT-CCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-cc----CCCceEEecCCC-HHHHHHHHhhcC-CCEEEE
Confidence            478999999999999999999999  899999999866532 11    357789999999 889999988  6 999999


Q ss_pred             ccCCCCC---CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCC-CCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          142 ATGFQPG---WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG-QILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       142 ~Ag~~~~---~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~-~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      |||....   .++...+++|+.++.++++++++.++++||++||.++|+.... .+..+ ..+..+.+.|+.+|.++|++
T Consensus        75 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e-~~~~~~~~~Y~~sK~~~e~~  153 (312)
T 2yy7_A           75 MAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQ-YTIMEPSTVYGISKQAGERW  153 (312)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCS-SCBCCCCSHHHHHHHHHHHH
T ss_pred             CCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccc-cCcCCCCchhHHHHHHHHHH
Confidence            9986432   3556678999999999999999999899999999999986543 22222 23345568899999999987


Q ss_pred             HHH----cCCcEEEEecCcccCCCCCC-------------------ceeeccccccccCCCCHHHHHHHHHHHhcCCCC-
Q 022216          218 IRK----SGINYTIIRPGGLRNEPPTG-------------------NIIMETEDTLYEGTISRDQVAEVAVEALLHPES-  273 (301)
Q Consensus       218 ~~~----~~i~~~~irpg~v~~~~~~~-------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-  273 (301)
                      ++.    +|++++++||++++|+....                   ............++++++|+|++++.++..+.. 
T Consensus       154 ~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~  233 (312)
T 2yy7_A          154 CEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEK  233 (312)
T ss_dssp             HHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCcccc
Confidence            753    59999999999999964211                   011111222334689999999999999987753 


Q ss_pred             --CCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          274 --SYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       274 --~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                        .+++||+++    +.+++.|+++.+.+
T Consensus       234 ~~~~~~~ni~~----~~~s~~e~~~~i~~  258 (312)
T 2yy7_A          234 IKIHSSYNLAA----MSFTPTEIANEIKK  258 (312)
T ss_dssp             CCCSSCEECCS----EEECHHHHHHHHHT
T ss_pred             cccCceEEeCC----CccCHHHHHHHHHH
Confidence              247999975    68999999999876

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=100.00  E-value=2e-32  Score=244.79  Aligned_cols=229  Identities=17%  Similarity=0.173  Sum_probs=173.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hh----hhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KA----KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~V  139 (301)
                      +|+||||||+||||++++++|+++|++|++++|... ..    ..+.  ...++.++.+|++| .+++.+++.+ ++|+|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~--~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~v   77 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS--SLGNFEFVHGDIRN-KNDVTRLITKYMPDSC   77 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH--TTCCCEEEECCTTC-HHHHHHHHHHHCCSEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhc--cCCceEEEEcCCCC-HHHHHHHHhccCCCEE
Confidence            368999999999999999999999999999998532 11    1111  22468999999999 8888888764 59999


Q ss_pred             EEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecccccccccCCCCCC---------------cchh
Q 022216          140 VCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQILN---------------PAYI  199 (301)
Q Consensus       140 i~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~~~---------------~~~~  199 (301)
                      |||||....    .++...+++|+.|+.++++++++.+++ +||++||.++|+.....+..               .+..
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~  157 (347)
T 1orr_A           78 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST  157 (347)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTS
T ss_pred             EECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccC
Confidence            999996542    356677899999999999999998875 99999999999865432210               0111


Q ss_pred             hcchhhHHHHHHHHHHHHHHH----cCCcEEEEecCcccCCCCCCc-----------------------eeecccccccc
Q 022216          200 FLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPTGN-----------------------IIMETEDTLYE  252 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~~~-----------------------~~~~~~~~~~~  252 (301)
                      +..+.+.|+.+|.++|++++.    .|+++++|||++++|+.....                       +...+......
T Consensus       158 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~  237 (347)
T 1orr_A          158 QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVR  237 (347)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEE
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcceE
Confidence            234568899999999988754    499999999999999864321                       00011112223


Q ss_pred             CCCCHHHHHHHHHHHhcC-CCCCCcEEEeecCCCCC--CcCHHHHHHHhhc
Q 022216          253 GTISRDQVAEVAVEALLH-PESSYKVVEIISRVDAP--KRSYEDLFGSIKQ  300 (301)
Q Consensus       253 ~~v~~~Dva~~~~~~l~~-~~~~~~~~~v~~~~~~~--~~s~~e~~~~i~~  300 (301)
                      .+++++|+|++++.++.. +...+++||+.++   .  .+++.|+++.+.+
T Consensus       238 ~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~---~~~~~s~~e~~~~i~~  285 (347)
T 1orr_A          238 DVLHAEDMISLYFTALANVSKIRGNAFNIGGT---IVNSLSLLELFKLLED  285 (347)
T ss_dssp             ECEEHHHHHHHHHHHHHTHHHHTTCEEEESSC---GGGEEEHHHHHHHHHH
T ss_pred             eeEEHHHHHHHHHHHHhccccCCCCEEEeCCC---CCCCccHHHHHHHHHH
Confidence            588999999999988875 3346789999884   4  5999999998865

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=100.00  E-value=1.9e-32  Score=250.04  Aligned_cols=231  Identities=14%  Similarity=0.149  Sum_probs=172.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh--------------------hccccCCCCeEEEEccCCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--------------------TTLSKDNPSLQIVKADVTE  123 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~--------------------~~~~~~~~~~~~~~~Dl~~  123 (301)
                      .++++||||||+||||++++++|+++|++|++++|......                    ........++.++.+|++|
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d   88 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD   88 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence            35899999999999999999999999999999988643211                    0000013578999999999


Q ss_pred             ChHhHHHHhcC-CCCEEEEccCCCCC----CCC---CCceeeehHHHHHHHHHHHHcCC-CEEEEecccccccccCCCCC
Q 022216          124 GSAKLSEAIGD-DSEAVVCATGFQPG----WDL---FAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       124 ~~~~~~~~~~~-~~d~Vi~~Ag~~~~----~~~---~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~~~~~~~~~~~~  194 (301)
                       .+++.+++.+ ++|+||||||....    .++   ...+++|+.|+.++++++++.++ ++||++||.++|+.... +.
T Consensus        89 -~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~-~~  166 (404)
T 1i24_A           89 -FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DI  166 (404)
T ss_dssp             -HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CB
T ss_pred             -HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCCC-CC
Confidence             8888888765 59999999996531    121   23678999999999999999887 59999999999986542 22


Q ss_pred             Ccch-------------hhcchhhHHHHHHHHHHHHHHH----cCCcEEEEecCcccCCCCCC-----------------
Q 022216          195 NPAY-------------IFLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPTG-----------------  240 (301)
Q Consensus       195 ~~~~-------------~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~~-----------------  240 (301)
                      .+..             .+..+.+.|+.+|.++|++++.    +|+++++|||++++||....                 
T Consensus       167 ~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~  246 (404)
T 1i24_A          167 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVF  246 (404)
T ss_dssp             CSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTT
T ss_pred             CccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccch
Confidence            2210             1334567899999999987653    59999999999999986421                 


Q ss_pred             -c--------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCC--cEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          241 -N--------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSY--KVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       241 -~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~--~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                       .              +...+......++++++|+|++++.++..+...+  ++||+++    +.+++.|+++.+.+
T Consensus       247 ~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~----~~~s~~e~~~~i~~  319 (404)
T 1i24_A          247 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT----EQFSVNELASLVTK  319 (404)
T ss_dssp             CCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECS----EEEEHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECC----CCCcHHHHHHHHHH
Confidence             0              1111222233468999999999999998765445  7999976    67999999999864

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.98  E-value=6.3e-32  Score=246.11  Aligned_cols=230  Identities=17%  Similarity=0.147  Sum_probs=175.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHH-HCCCeEEEEEeCCchh---------hhcc---ccC-----CCC---eEEEEccCCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLL-AKGFAVKAGVRDLDKA---------KTTL---SKD-----NPS---LQIVKADVTEG  124 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~-~~G~~V~~~~r~~~~~---------~~~~---~~~-----~~~---~~~~~~Dl~~~  124 (301)
                      +|+||||||+||||++++++|+ ++|++|++++|+....         +.+.   ...     ..+   +.++.+|++| 
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-   80 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN-   80 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC-
Confidence            5799999999999999999999 9999999999876542         2210   000     124   8999999999 


Q ss_pred             hHhHHHHhcC--CCCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC-------C
Q 022216          125 SAKLSEAIGD--DSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-------G  191 (301)
Q Consensus       125 ~~~~~~~~~~--~~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~-------~  191 (301)
                      .+.+.+++..  ++|+||||||....    .++..++++|+.++.++++++++.++++||++||.++|+...       .
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~  160 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence            8888888862  39999999997542    355677899999999999999999989999999999998654       2


Q ss_pred             CCCCcchhhcchhhHHHHHHHHHHHHHHH----cCCcEEEEecCcccCCCCC----------Cce----e--------ec
Q 022216          192 QILNPAYIFLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPT----------GNI----I--------ME  245 (301)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~----------~~~----~--------~~  245 (301)
                      .+..++. +..+...|+.+|.++|++++.    .+++++++||++++|+...          ..+    .        ..
T Consensus       161 ~~~~E~~-~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  239 (397)
T 1gy8_A          161 EPIDINA-KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD  239 (397)
T ss_dssp             CCBCTTS-CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred             cCcCccC-CCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhc
Confidence            3333332 335568899999999988754    5999999999999998531          110    0        00


Q ss_pred             c------------------------ccccccCCCCHHHHHHHHHHHhcCCCCC-----C---cEEEeecCCCCCCcCHHH
Q 022216          246 T------------------------EDTLYEGTISRDQVAEVAVEALLHPESS-----Y---KVVEIISRVDAPKRSYED  293 (301)
Q Consensus       246 ~------------------------~~~~~~~~v~~~Dva~~~~~~l~~~~~~-----~---~~~~v~~~~~~~~~s~~e  293 (301)
                      .                        ......++++++|+|++++.++..+...     +   ++||++++   +.+++.|
T Consensus       240 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~---~~~s~~e  316 (397)
T 1gy8_A          240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS---RGYSVRE  316 (397)
T ss_dssp             -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS---CCEEHHH
T ss_pred             CccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCC---CcccHHH
Confidence            0                        1112235899999999999888754322     3   79999885   8999999


Q ss_pred             HHHHhhc
Q 022216          294 LFGSIKQ  300 (301)
Q Consensus       294 ~~~~i~~  300 (301)
                      +++.|.+
T Consensus       317 ~~~~i~~  323 (397)
T 1gy8_A          317 VIEVARK  323 (397)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.98  E-value=4.3e-32  Score=239.71  Aligned_cols=217  Identities=15%  Similarity=0.126  Sum_probs=148.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag  144 (301)
                      +|+||||||+||||++++++|+++|++|++++|+...         .+  ++.+|++| .+++.+++.+ ++|+||||||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~--~~~~Dl~d-~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------PK--FEQVNLLD-SNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------CC--eEEecCCC-HHHHHHHHHhhCCCEEEECCc
Confidence            5799999999999999999999999999999986543         12  78899999 7778887764 4999999999


Q ss_pred             CCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH
Q 022216          145 FQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (301)
Q Consensus       145 ~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (301)
                      ...    ..++...+++|+.++.++++++++.++ +||++||.++|+.. ..+..+.. +..+.+.|+.+|.++|++++.
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~~-~~~~~E~~-~~~~~~~Y~~sK~~~e~~~~~  146 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDGT-NPPYREED-IPAPLNLYGKTKLDGEKAVLE  146 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCSS-SCSBCTTS-CCCCCSHHHHHHHHHHHHHHH
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCCC-CCCCCCCC-CCCCcCHHHHHHHHHHHHHHH
Confidence            643    246778899999999999999998886 99999999999873 33333332 234567899999999999998


Q ss_pred             cCCcEEEEecCcccCCCCC---Cc---ee---e-cc-----ccccccCCCCHHHHHHHHHHHhcCC---CCCCcEEEeec
Q 022216          221 SGINYTIIRPGGLRNEPPT---GN---II---M-ET-----EDTLYEGTISRDQVAEVAVEALLHP---ESSYKVVEIIS  282 (301)
Q Consensus       221 ~~i~~~~irpg~v~~~~~~---~~---~~---~-~~-----~~~~~~~~v~~~Dva~~~~~~l~~~---~~~~~~~~v~~  282 (301)
                      .++++++|||+.++|+...   +.   +.   . ..     .......+++++|+|++++.++.++   ...+++||+.+
T Consensus       147 ~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~  226 (315)
T 2ydy_A          147 NNLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSG  226 (315)
T ss_dssp             HCTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEECSSBBCCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCC
T ss_pred             hCCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeeccCceECcEEHHHHHHHHHHHHHhhccccCCCCeEEEcC
Confidence            8999999999999998654   11   00   0 00     0122346889999999998888653   24578999998


Q ss_pred             CCCCCCcCHHHHHHHhhc
Q 022216          283 RVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       283 ~~~~~~~s~~e~~~~i~~  300 (301)
                      +   +.+++.|+++.+.+
T Consensus       227 ~---~~~s~~e~~~~i~~  241 (315)
T 2ydy_A          227 N---EQMTKYEMACAIAD  241 (315)
T ss_dssp             S---CCBCHHHHHHHHHH
T ss_pred             C---CcccHHHHHHHHHH
Confidence            5   89999999998864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.98  E-value=1.7e-31  Score=224.43  Aligned_cols=205  Identities=20%  Similarity=0.165  Sum_probs=159.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+||||||+|+||++++++|+++|++|++++|++++...+.   ..+++++.+|++| .+.  +.+.+ +|+||||||..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~~D~~d-~~~--~~~~~-~d~vi~~ag~~   73 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL---GATVATLVKEPLV-LTE--ADLDS-VDAVVDALSVP   73 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT---CTTSEEEECCGGG-CCH--HHHTT-CSEEEECCCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc---CCCceEEeccccc-ccH--hhccc-CCEEEECCccC
Confidence            57999999999999999999999999999999988776553   3689999999999 444  78888 99999999975


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCC---CCCcchhhcchhhHHHHHHHHHHHH--H-HH
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ---ILNPAYIFLNVFGLTLIAKLQAEQY--I-RK  220 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~---~~~~~~~~~~~~~~y~~sK~~~e~~--~-~~  220 (301)
                      ..   ....++|+.++.++++++++.+ ++||++||.+.+......   +..+.. ...+...|+.+|...|.+  + ++
T Consensus        74 ~~---~~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~sK~~~e~~~~~~~~  148 (224)
T 3h2s_A           74 WG---SGRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPE-SAASQPWYDGALYQYYEYQFLQMN  148 (224)
T ss_dssp             TT---SSCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCG-GGGGSTTHHHHHHHHHHHHHHTTC
T ss_pred             CC---cchhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCC-CCccchhhHHHHHHHHHHHHHHhc
Confidence            22   1235789999999999999999 899999998665433221   111111 123367899999999964  2 35


Q ss_pred             cCCcEEEEecCcccCCCCCCceeeccc----cccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          221 SGINYTIIRPGGLRNEPPTGNIIMETE----DTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       221 ~~i~~~~irpg~v~~~~~~~~~~~~~~----~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      .++++++|||++++|+.....+.....    ......+++++|+|++++.++.++...+++|++.+.
T Consensus       149 ~~i~~~ivrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~~~~~~~~  215 (224)
T 3h2s_A          149 ANVNWIGISPSEAFPSGPATSYVAGKDTLLVGEDGQSHITTGNMALAILDQLEHPTAIRDRIVVRDA  215 (224)
T ss_dssp             TTSCEEEEEECSBCCCCCCCCEEEESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCCCTTSEEEEEEC
T ss_pred             CCCcEEEEcCccccCCCcccCceecccccccCCCCCceEeHHHHHHHHHHHhcCccccCCEEEEecC
Confidence            799999999999999844333222111    111235899999999999999999888999999996

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.98  E-value=5.6e-32  Score=243.19  Aligned_cols=225  Identities=16%  Similarity=0.161  Sum_probs=173.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC----CCCE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSEA  138 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----~~d~  138 (301)
                      +++|+||||||+||||++++++|+++| ++|+++.|+.......   ...++. +.+|++| .+.+.+++.+    ++|+
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---~~~~~~-~~~d~~~-~~~~~~~~~~~~~~~~d~  118 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV---NLVDLN-IADYMDK-EDFLIQIMAGEEFGDVEA  118 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGG---GTTTSC-CSEEEEH-HHHHHHHHTTCCCSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhh---cccCce-EeeecCc-HHHHHHHHhhcccCCCCE
Confidence            467899999999999999999999999 9999999876543111   011233 7789998 7888888863    3999


Q ss_pred             EEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHH
Q 022216          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQ  216 (301)
Q Consensus       139 Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~  216 (301)
                      ||||||....  .++...+++|+.++.++++++++.++ +||++||.++|+.....+..+.. +..+.+.|+.+|.++|+
T Consensus       119 Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~  196 (357)
T 2x6t_A          119 IFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESRE-YEKPLNVFGYSKFLFDE  196 (357)
T ss_dssp             EEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGG-GCCCSSHHHHHHHHHHH
T ss_pred             EEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcC-CCCCCChhHHHHHHHHH
Confidence            9999996542  45566789999999999999999888 99999999999876554444443 44567889999999998


Q ss_pred             HHHH----cCCcEEEEecCcccCCCCCC-----c--------------eeecccccc-ccCCCCHHHHHHHHHHHhcCCC
Q 022216          217 YIRK----SGINYTIIRPGGLRNEPPTG-----N--------------IIMETEDTL-YEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       217 ~~~~----~~i~~~~irpg~v~~~~~~~-----~--------------~~~~~~~~~-~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +++.    .|+++++|||++++|+....     .              +........ ...+++++|+|++++.++..+.
T Consensus       197 ~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~  276 (357)
T 2x6t_A          197 YVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV  276 (357)
T ss_dssp             HHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC
Confidence            8754    48999999999999986431     1              011112223 4468999999999999988765


Q ss_pred             CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          273 SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       273 ~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                        +++||+.++   +.+++.|+++.+.+
T Consensus       277 --~~~~~i~~~---~~~s~~e~~~~i~~  299 (357)
T 2x6t_A          277 --SGIFNLGTG---RAESFQAVADATLA  299 (357)
T ss_dssp             --CEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             --CCeEEecCC---CcccHHHHHHHHHH
Confidence              789999985   89999999998865

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.98  E-value=1.6e-31  Score=238.64  Aligned_cols=229  Identities=14%  Similarity=0.064  Sum_probs=178.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh--ccc-cCCCCeEEEEccCCCChHhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT--TLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~--~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi  140 (301)
                      ++|+||||||+||||++++++|+++|++|++++|+.+....  +.. ....++.++.+|++| .+++.+++.+ ++|+||
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLE-FSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCC-HHHHHHHHHhcCCCEEE
Confidence            57899999999999999999999999999999998765321  110 012478999999999 8888888875 479999


Q ss_pred             EccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH
Q 022216          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       141 ~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (301)
                      ||||...    ..++...+++|+.|+.++++++++.++ ++||++||.++||.....+..+.. +..+.+.|+.+|.++|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~-~~~~~~~Y~~sK~~~e  159 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKT-PFYPRSPYAVAKLFGH  159 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTS-CCCCCSHHHHHHHHHH
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccC-CCCCCChhHHHHHHHH
Confidence            9999754    345667789999999999999998886 899999999999876554433332 3345678999999999


Q ss_pred             HHHHH----cCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          216 QYIRK----SGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       216 ~~~~~----~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ++++.    .+++++++|+.++++|......                   ...........+++++|+|++++.++..+.
T Consensus       160 ~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~  239 (345)
T 2z1m_A          160 WITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPE  239 (345)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCC
Confidence            87753    5899999999999988543211                   011111223458999999999998887664


Q ss_pred             CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          273 SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       273 ~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                        +++||++++   +.+++.|+++.+.+
T Consensus       240 --~~~~~i~~~---~~~s~~e~~~~i~~  262 (345)
T 2z1m_A          240 --PDDYVIATG---ETHTVREFVEKAAK  262 (345)
T ss_dssp             --CCCEEECCS---CCEEHHHHHHHHHH
T ss_pred             --CceEEEeCC---CCccHHHHHHHHHH
Confidence              368999985   89999999998864

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.98  E-value=3.2e-32  Score=237.40  Aligned_cols=206  Identities=14%  Similarity=0.185  Sum_probs=172.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+||||||+|+||++++++|+++|++|++++|.                  ++|++| .+.+.+++.+ ++|+||||||.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------~~D~~d-~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK------------------LLDITN-ISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT------------------TSCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc------------------ccCCCC-HHHHHHHHHhcCCCEEEECCcc
Confidence            389999999999999999999999999999882                  389999 8899998883 39999999997


Q ss_pred             CCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       146 ~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ...    .++...+++|+.++.++++++++.++ ||||+||.++|+.....+..++. +..+.+.|+.+|.++|++++..
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~  144 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFH-NPAPINIYGASKYAGEQFVKEL  144 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTS-CCCCCSHHHHHHHHHHHHHHHH
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHh
Confidence            642    46677889999999999999999987 89999999999877655554443 3456789999999999999988


Q ss_pred             CCcEEEEecCcccCCCCCCc-------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCC
Q 022216          222 GINYTIIRPGGLRNEPPTGN-------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPK  288 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~-------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~  288 (301)
                      +.+++++||+.++|+...+.             +...+ . ....+++++|+|++++.++..+.  +++||++++   +.
T Consensus       145 ~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~v~Dva~~~~~~~~~~~--~~~~~i~~~---~~  217 (287)
T 3sc6_A          145 HNKYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVA-D-QIGSPTYVADLNVMINKLIHTSL--YGTYHVSNT---GS  217 (287)
T ss_dssp             CSSEEEEEECSEECSSSCCHHHHHHHHHTTCSEEEEEC-S-CEECCEEHHHHHHHHHHHHTSCC--CEEEECCCB---SC
T ss_pred             CCCcEEEeeeeecCCCCCcHHHHHHHHHHcCCCeEeec-C-cccCceEHHHHHHHHHHHHhCCC--CCeEEEcCC---Cc
Confidence            88999999999999854321             11111 2 33478999999999999998876  679999996   89


Q ss_pred             cCHHHHHHHhhc
Q 022216          289 RSYEDLFGSIKQ  300 (301)
Q Consensus       289 ~s~~e~~~~i~~  300 (301)
                      +++.|+++.+.+
T Consensus       218 ~s~~e~~~~i~~  229 (287)
T 3sc6_A          218 CSWFEFAKKIFS  229 (287)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH
Confidence            999999998875

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.98  E-value=1.5e-31  Score=240.51  Aligned_cols=227  Identities=15%  Similarity=0.115  Sum_probs=176.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCc--hhhhccc-cCCCCeEEEEccCCCChHhHHHHhc--CCCCEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLD--KAKTTLS-KDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVV  140 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~--~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi  140 (301)
                      |+||||||+||||++++++|++. |++|++++|+..  ..+.+.. ....++.++.+|++| .+++.+++.  + +|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~-~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD-SAEITRIFEQYQ-PDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC-HHHHHHHHHHHC-CSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCC-HHHHHHHHhhcC-CCEEE
Confidence            57999999999999999999998 799999998752  2222211 013578999999999 889999987  7 99999


Q ss_pred             EccCCCCC----CCCCCceeeehHHHHHHHHHHHHc--CCC-------EEEEecccccccccCC--C--------CCCcc
Q 022216          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRKR--GVN-------RFILISSILVNGAAMG--Q--------ILNPA  197 (301)
Q Consensus       141 ~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~--~~~-------~iV~~SS~~~~~~~~~--~--------~~~~~  197 (301)
                      ||||....    .++..++++|+.|+.++++++++.  +++       +||++||.++|+....  .        +..++
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~  158 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET  158 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC
Confidence            99997542    356778899999999999999987  776       9999999999986431  0        22222


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHH----cCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRD  258 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~  258 (301)
                       .+..+.+.|+.+|.++|++++.    .|++++++||++++|+.....               +...........+++++
T Consensus       159 -~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  237 (361)
T 1kew_A          159 -TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVE  237 (361)
T ss_dssp             -SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHH
T ss_pred             -CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEeeEEHH
Confidence             2335567899999999988754    599999999999999975321               01111122234588999


Q ss_pred             HHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          259 QVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       259 Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      |+|++++.++..+. .+++||+.++   +.+++.|+++.+.+
T Consensus       238 Dva~a~~~~~~~~~-~g~~~~v~~~---~~~s~~e~~~~i~~  275 (361)
T 1kew_A          238 DHARALHMVVTEGK-AGETYNIGGH---NEKKNLDVVFTICD  275 (361)
T ss_dssp             HHHHHHHHHHHHCC-TTCEEEECCC---CEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCCEEEecCC---CeeeHHHHHHHHHH
Confidence            99999998887653 5789999985   88999999998864

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.98  E-value=7.1e-32  Score=226.11  Aligned_cols=210  Identities=19%  Similarity=0.217  Sum_probs=148.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+||||||+|+||++++++|+++|++|++++|++++...+.    .++.++.+|++| .++  +.+.+ +|+||||||..
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~----~~~~~~~~D~~d-~~~--~~~~~-~d~vi~~ag~~   72 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH----KDINILQKDIFD-LTL--SDLSD-QNVVVDAYGIS   72 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC----SSSEEEECCGGG-CCH--HHHTT-CSEEEECCCSS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc----CCCeEEeccccC-hhh--hhhcC-CCEEEECCcCC
Confidence            57999999999999999999999999999999988766543    689999999999 444  78888 99999999974


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH--HH--HcC
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY--IR--KSG  222 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~--~~--~~~  222 (301)
                      ..     ..++|+.++.++++++++.+++++|++||..+|....+........+..+...|+.+|...|.+  ++  ..+
T Consensus        73 ~~-----~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~g  147 (221)
T 3ew7_A           73 PD-----EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAE  147 (221)
T ss_dssp             TT-----TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC-------------------CCCSCCHHHHHHHHHHHHTTTTT
T ss_pred             cc-----ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHhhccC
Confidence            32     2467999999999999999889999999987654333211111112223445678899988875  55  689


Q ss_pred             CcEEEEecCcccCCCCC-Cceeecccc----ccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHH
Q 022216          223 INYTIIRPGGLRNEPPT-GNIIMETED----TLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYE  292 (301)
Q Consensus       223 i~~~~irpg~v~~~~~~-~~~~~~~~~----~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~  292 (301)
                      +++++|||++++|+... +.+......    .....+++++|+|++++.++.++...+++||++++   ...+.+
T Consensus       148 i~~~ivrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~~~---~~~~~~  219 (221)
T 3ew7_A          148 FSWTYISPSAMFEPGERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLNEHFTVAGK---LEHHHH  219 (221)
T ss_dssp             SCEEEEECSSCCCCC---------------------CCCHHHHHHHHHHHHHSCSCTTSEEECCC----------
T ss_pred             ccEEEEeCcceecCCCccCceEeccccceecCCCCceEeHHHHHHHHHHHHhCccccCCEEEECCC---Cccccc
Confidence            99999999999997322 111111110    01124899999999999999999888999999996   554443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.98  E-value=5.7e-32  Score=241.17  Aligned_cols=232  Identities=16%  Similarity=0.121  Sum_probs=174.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEE-EccCCCChHhHHHHhcCCCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIV-KADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      .+++|+||||||+||||++++++|+++|++|++++|+.++...+...    ...+++++ .+|++| .+.+.+++.+ +|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~-~d   85 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK-QGAYDEVIKG-AA   85 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS-TTTTTTTTTT-CS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC-hHHHHHHHcC-CC
Confidence            34689999999999999999999999999999999987654432210    12578888 899999 7888888888 99


Q ss_pred             EEEEccCCCCC-CCCCCceeeehHHHHHHHHHHHH-cCCCEEEEecccccccccCC----CCCCcch-------------
Q 022216          138 AVVCATGFQPG-WDLFAPWKVDNFGTVNLVEACRK-RGVNRFILISSILVNGAAMG----QILNPAY-------------  198 (301)
Q Consensus       138 ~Vi~~Ag~~~~-~~~~~~~~~N~~g~~~l~~a~~~-~~~~~iV~~SS~~~~~~~~~----~~~~~~~-------------  198 (301)
                      +||||||.... .++...+++|+.|+.++++++++ .++++||++||.++|+....    .+..++.             
T Consensus        86 ~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  165 (342)
T 1y1p_A           86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP  165 (342)
T ss_dssp             EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSC
T ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcccc
Confidence            99999996542 35666789999999999999985 57789999999999854321    2222221             


Q ss_pred             --hhcchhhHHHHHHHHHHHHHHHc------CCcEEEEecCcccCCCCCCce----e-------ecc------ccccccC
Q 022216          199 --IFLNVFGLTLIAKLQAEQYIRKS------GINYTIIRPGGLRNEPPTGNI----I-------MET------EDTLYEG  253 (301)
Q Consensus       199 --~~~~~~~~y~~sK~~~e~~~~~~------~i~~~~irpg~v~~~~~~~~~----~-------~~~------~~~~~~~  253 (301)
                        .+..+.+.|+.+|.++|++++..      +++++++||++++|+......    .       ...      .......
T Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T 1y1p_A          166 ESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQY  245 (342)
T ss_dssp             TTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEE
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccCCcCC
Confidence              12346688999999999877532      799999999999998654310    0       000      0012235


Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          254 TISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++++|+|++++.++..+...++.+ +..+   ..+++.|+++.+.+
T Consensus       246 ~v~v~Dva~a~~~~~~~~~~~g~~~-~~~g---~~~s~~e~~~~i~~  288 (342)
T 1y1p_A          246 YVSAVDIGLLHLGCLVLPQIERRRV-YGTA---GTFDWNTVLATFRK  288 (342)
T ss_dssp             EEEHHHHHHHHHHHHHCTTCCSCEE-EECC---EEECHHHHHHHHHH
T ss_pred             EeEHHHHHHHHHHHHcCcccCCceE-EEeC---CCCCHHHHHHHHHH
Confidence            7999999999999888765445444 3343   67999999998875

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.98  E-value=3.6e-31  Score=236.63  Aligned_cols=225  Identities=14%  Similarity=0.160  Sum_probs=171.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .+++|+||||||+||||++++++|+++|++|++++|+.....+....  ...++.++.+|+.+ .     .+.+ +|+||
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~-----~~~~-~d~vi   96 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE-P-----LYIE-VDQIY   96 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTS-C-----CCCC-CSEEE
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCC-h-----hhcC-CCEEE
Confidence            45689999999999999999999999999999999975432211110  23578999999998 3     2567 99999


Q ss_pred             EccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcch----hhcchhhHHHHHHH
Q 022216          141 CATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKL  212 (301)
Q Consensus       141 ~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~----~~~~~~~~y~~sK~  212 (301)
                      ||||...    ..++...+++|+.++.++++++++.++ +||++||.++|+.....+..+..    .+..+.+.|+.+|.
T Consensus        97 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~  175 (343)
T 2b69_A           97 HLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKR  175 (343)
T ss_dssp             ECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHH
T ss_pred             ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHH
Confidence            9999654    234556789999999999999999886 99999999999866544433332    23455688999999


Q ss_pred             HHHHHHH----HcCCcEEEEecCcccCCCCCC---c--------------eeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          213 QAEQYIR----KSGINYTIIRPGGLRNEPPTG---N--------------IIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       213 ~~e~~~~----~~~i~~~~irpg~v~~~~~~~---~--------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ++|++++    +.+++++++||++++|+....   .              +...........+++++|+|++++.++..+
T Consensus       176 ~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~  255 (343)
T 2b69_A          176 VAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN  255 (343)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcC
Confidence            9998764    469999999999999986431   1              111112223346899999999998888765


Q ss_pred             CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          272 ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .  +++||++++   +.+++.|+++.+.+
T Consensus       256 ~--~~~~~i~~~---~~~s~~e~~~~i~~  279 (343)
T 2b69_A          256 V--SSPVNLGNP---EEHTILEFAQLIKN  279 (343)
T ss_dssp             C--CSCEEESCC---CEEEHHHHHHHHHH
T ss_pred             C--CCeEEecCC---CCCcHHHHHHHHHH
Confidence            3  678999985   89999999998865

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.98  E-value=1.9e-31  Score=235.70  Aligned_cols=216  Identities=17%  Similarity=0.111  Sum_probs=169.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch----hhhccc-cCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----AKTTLS-KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~----~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      .+|+||||||+|+||++++++|+++|++|++++|+...    ...+.. ....+++++.+|++           + +|+|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----------~-~d~v   73 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----------D-VRLV   73 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----------T-EEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----------c-CCEE
Confidence            47899999999999999999999999999999998762    111110 01234555555554           5 9999


Q ss_pred             EEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH
Q 022216          140 VCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       140 i~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (301)
                      ||+|+...    ..++...++ |+.++.++++++++.++++|||+||.++|+.....+..+.. +..+.+.|+.+|.++|
T Consensus        74 i~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~-~~~p~~~Y~~sK~~~E  151 (321)
T 3vps_A           74 YHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDS-PLSPRSPYAASKVGLE  151 (321)
T ss_dssp             EECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTS-CCCCCSHHHHHHHHHH
T ss_pred             EECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCC-CCCCCChhHHHHHHHH
Confidence            99999754    345667778 99999999999999999999999999999887665554443 3456788999999999


Q ss_pred             HHHHH----cCC-cEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          216 QYIRK----SGI-NYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       216 ~~~~~----~~i-~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      ++++.    .++ +++++||++++|+.....               +...........+++++|+|++++.++..+.. +
T Consensus       152 ~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~-g  230 (321)
T 3vps_A          152 MVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLP-S  230 (321)
T ss_dssp             HHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCC-S
T ss_pred             HHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCC-C
Confidence            88764    589 999999999999875431               11222233445789999999999999988765 5


Q ss_pred             cEEEeecCCCCCCcCHHHHHHHhh
Q 022216          276 KVVEIISRVDAPKRSYEDLFGSIK  299 (301)
Q Consensus       276 ~~~~v~~~~~~~~~s~~e~~~~i~  299 (301)
                       +||++++   +.+++.|+++.+.
T Consensus       231 -~~~i~~~---~~~s~~e~~~~i~  250 (321)
T 3vps_A          231 -VVNFGSG---QSLSVNDVIRILQ  250 (321)
T ss_dssp             -EEEESCS---CCEEHHHHHHHHH
T ss_pred             -eEEecCC---CcccHHHHHHHHH
Confidence             9999985   8999999999885

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.97  E-value=1.1e-31  Score=239.38  Aligned_cols=230  Identities=18%  Similarity=0.175  Sum_probs=171.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh----hhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA----KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      |+||||||+||||++++++|+++|++|++++|.....    +.+......++.++.+|++| .+++.+++.+ ++|+|||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~D~vih   79 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC-HHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCC-HHHHHHHhhccCCCEEEE
Confidence            5799999999999999999999999999988753321    11110013468899999999 8888888863 4999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      |||....    .++..++++|+.++.++++++++.++++||++||.++|+.....+..++.+...+...|+.+|.++|++
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~  159 (338)
T 1udb_A           80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQI  159 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHHH
T ss_pred             CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHHHH
Confidence            9996531    244567899999999999999988889999999999998654444444332222357899999999987


Q ss_pred             HHH----c-CCcEEEEecCcccCCCCC-----------Cce---------------eecc------ccccccCCCCHHHH
Q 022216          218 IRK----S-GINYTIIRPGGLRNEPPT-----------GNI---------------IMET------EDTLYEGTISRDQV  260 (301)
Q Consensus       218 ~~~----~-~i~~~~irpg~v~~~~~~-----------~~~---------------~~~~------~~~~~~~~v~~~Dv  260 (301)
                      ++.    . +++++++||++++|+...           ..+               ....      ......++++++|+
T Consensus       160 ~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dv  239 (338)
T 1udb_A          160 LTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL  239 (338)
T ss_dssp             HHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHH
T ss_pred             HHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHHHH
Confidence            753    3 799999999999987321           000               0000      11122368999999


Q ss_pred             HHHHHHHhcCC--CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          261 AEVAVEALLHP--ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       261 a~~~~~~l~~~--~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      |++++.++..+  ...+++||++++   +.+++.|+++.+.+
T Consensus       240 a~a~~~~l~~~~~~~~~~~yni~~~---~~~s~~e~~~~i~~  278 (338)
T 1udb_A          240 ADGHVVAMEKLANKPGVHIYNLGAG---VGNSVLDVVNAFSK  278 (338)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccCCCcEEEecCC---CceeHHHHHHHHHH
Confidence            99998888653  223478999885   89999999998864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.97  E-value=6.6e-31  Score=228.98  Aligned_cols=209  Identities=12%  Similarity=0.117  Sum_probs=169.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +|+|||||| |+||++++++|+++|++|++++|++.+...+..   .+++++.+|++| .+     +.+ +|+|||+|+.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~D~~d-~~-----~~~-~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA---SGAEPLLWPGEE-PS-----LDG-VTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH---TTEEEEESSSSC-CC-----CTT-CCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh---CCCeEEEecccc-cc-----cCC-CCEEEECCCc
Confidence            479999998 999999999999999999999999877655433   679999999999 33     677 9999999986


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHH--cCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc-C
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRK--RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS-G  222 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~--~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~-~  222 (301)
                      ....         ...+.++++++++  .++++|||+||.++|+...+.+..++. +..+.+.|+.+|.++|++++.. +
T Consensus        74 ~~~~---------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~~~  143 (286)
T 3ius_A           74 DSGG---------DPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETT-PLTPTAARGRWRVMAEQQWQAVPN  143 (286)
T ss_dssp             BTTB---------CHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTS-CCCCCSHHHHHHHHHHHHHHHSTT
T ss_pred             cccc---------cHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCC-CCCCCCHHHHHHHHHHHHHHhhcC
Confidence            5332         1236889999988  678999999999999877655544443 3455678999999999999887 9


Q ss_pred             CcEEEEecCcccCCCCCC-------c-eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHH
Q 022216          223 INYTIIRPGGLRNEPPTG-------N-IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDL  294 (301)
Q Consensus       223 i~~~~irpg~v~~~~~~~-------~-~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~  294 (301)
                      ++++++||++++|+....       . ...... ....++++++|+|++++.++..+. .+++||++++   +.+++.|+
T Consensus       144 ~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~~~-~g~~~~i~~~---~~~s~~e~  218 (286)
T 3ius_A          144 LPLHVFRLAGIYGPGRGPFSKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPD-PGAVYNVCDD---EPVPPQDV  218 (286)
T ss_dssp             CCEEEEEECEEEBTTBSSSTTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHSCC-TTCEEEECCS---CCBCHHHH
T ss_pred             CCEEEEeccceECCCchHHHHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhCCC-CCCEEEEeCC---CCccHHHH
Confidence            999999999999985322       1 112222 234578999999999999998876 6789999985   88999999


Q ss_pred             HHHhhc
Q 022216          295 FGSIKQ  300 (301)
Q Consensus       295 ~~~i~~  300 (301)
                      ++.+.+
T Consensus       219 ~~~i~~  224 (286)
T 3ius_A          219 IAYAAE  224 (286)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.97  E-value=2.3e-31  Score=231.90  Aligned_cols=204  Identities=21%  Similarity=0.283  Sum_probs=168.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      |+||||||+|+||++++++|+++  |++|++++|++++...+..   .+++++.+|++| .+++.+++.+ +|+|||+|+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~---~~~~~~~~D~~d-~~~l~~~~~~-~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD---QGVEVRHGDYNQ-PESLQKAFAG-VSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH---TTCEEEECCTTC-HHHHHHHTTT-CSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh---cCCeEEEeccCC-HHHHHHHHhc-CCEEEEcCC
Confidence            57999999999999999999999  9999999998776554432   578899999999 8999999999 999999998


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGIN  224 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~  224 (301)
                      ....      -++|+.++.++++++++.++++||++||.++|..               ...|+.+|.++|+++++.+++
T Consensus        76 ~~~~------~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---------------~~~y~~~K~~~E~~~~~~~~~  134 (287)
T 2jl1_A           76 PHYD------NTLLIVQHANVVKAARDAGVKHIAYTGYAFAEES---------------IIPLAHVHLATEYAIRTTNIP  134 (287)
T ss_dssp             CCSC------HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC---------------CSTHHHHHHHHHHHHHHTTCC
T ss_pred             CCcC------chHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------CCchHHHHHHHHHHHHHcCCC
Confidence            5321      1579999999999999999999999999976521               125889999999999999999


Q ss_pred             EEEEecCcccCCCCC---------CceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHH
Q 022216          225 YTIIRPGGLRNEPPT---------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLF  295 (301)
Q Consensus       225 ~~~irpg~v~~~~~~---------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~  295 (301)
                      ++++||+.++++...         +...... ......+++++|+|++++.++..+...+++||+.++   +.+|+.|++
T Consensus       135 ~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~~---~~~s~~e~~  210 (287)
T 2jl1_A          135 YTFLRNALYTDFFVNEGLRASTESGAIVTNA-GSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSN---QPWTFDELA  210 (287)
T ss_dssp             EEEEEECCBHHHHSSGGGHHHHHHTEEEESC-TTCCBCCBCHHHHHHHHHHHHTSSSCTTEEEEECCS---SCBCHHHHH
T ss_pred             eEEEECCEeccccchhhHHHHhhCCceeccC-CCCccCccCHHHHHHHHHHHhcCCCCCCcEEEecCC---CcCCHHHHH
Confidence            999999998876411         1111111 222346899999999999999877667889999985   899999999


Q ss_pred             HHhhc
Q 022216          296 GSIKQ  300 (301)
Q Consensus       296 ~~i~~  300 (301)
                      +.+.+
T Consensus       211 ~~i~~  215 (287)
T 2jl1_A          211 QILSE  215 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.97  E-value=2.9e-31  Score=247.58  Aligned_cols=233  Identities=15%  Similarity=0.184  Sum_probs=181.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHC---CCeEEEEEeCCchhhh------cccc------------CCCCeEEEEccC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAK---GFAVKAGVRDLDKAKT------TLSK------------DNPSLQIVKADV  121 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~---G~~V~~~~r~~~~~~~------~~~~------------~~~~~~~~~~Dl  121 (301)
                      ..++|+||||||+||||++++++|+++   |++|++++|+.+....      ....            ...++.++.+|+
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl  149 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK  149 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence            356899999999999999999999999   9999999998764321      1110            136899999999


Q ss_pred             CCC-----hHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCc
Q 022216          122 TEG-----SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       122 ~~~-----~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                      +++     .+.+.+++.+ +|+||||||.....++...+++|+.|+.+++++|++.++++|||+||.++|+.....+..+
T Consensus       150 ~~~~~gld~~~~~~~~~~-~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~~~E  228 (478)
T 4dqv_A          150 SEPDLGLDQPMWRRLAET-VDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTE  228 (478)
T ss_dssp             TSGGGGCCHHHHHHHHHH-CCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTTCCS
T ss_pred             CCcccCCCHHHHHHHHcC-CCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCCcCC
Confidence            841     5788888888 9999999997766667788899999999999999999999999999999998755444333


Q ss_pred             chhhcch-----------hhHHHHHHHHHHHHHHH----cCCcEEEEecCcccCCCC-CCc-----e------------e
Q 022216          197 AYIFLNV-----------FGLTLIAKLQAEQYIRK----SGINYTIIRPGGLRNEPP-TGN-----I------------I  243 (301)
Q Consensus       197 ~~~~~~~-----------~~~y~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~-~~~-----~------------~  243 (301)
                      +.. ..+           .+.|+.+|+++|+++++    .|++++++|||+++|+.. .+.     .            .
T Consensus       229 ~~~-~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g~  307 (478)
T 4dqv_A          229 DAD-IRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGI  307 (478)
T ss_dssp             SSC-HHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHCE
T ss_pred             ccc-ccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcCc
Confidence            321 111           24499999999988864    599999999999999743 110     0            0


Q ss_pred             eccc----------cccccCCCCHHHHHHHHHHHhcC----CCCCCcEEEeecCCCCCC--cCHHHHHHHhhc
Q 022216          244 METE----------DTLYEGTISRDQVAEVAVEALLH----PESSYKVVEIISRVDAPK--RSYEDLFGSIKQ  300 (301)
Q Consensus       244 ~~~~----------~~~~~~~v~~~Dva~~~~~~l~~----~~~~~~~~~v~~~~~~~~--~s~~e~~~~i~~  300 (301)
                      .+..          ......+++++|+|++++.++..    +...+++||++++   +.  +++.|+++.+.+
T Consensus       308 ~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~---~~~~~s~~el~~~l~~  377 (478)
T 4dqv_A          308 APRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNP---HDDGIGLDEYVDWLIE  377 (478)
T ss_dssp             EESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCC---CCSSCSHHHHHHHHHH
T ss_pred             ccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCC---CCCCcCHHHHHHHHHH
Confidence            0000          02334679999999999988876    5567889999985   65  999999998875

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.97  E-value=4.7e-31  Score=238.68  Aligned_cols=227  Identities=16%  Similarity=0.064  Sum_probs=176.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-----hhhcccc----CCCCeEEEEccCCCChHhHHHHhcC-CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-----~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~~  136 (301)
                      |+||||||+||||++++++|+++|++|++++|+...     .+.+...    ...++.++.+|++| .+++.+++.+ ++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~  103 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTD-STCLVKIINEVKP  103 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTC-HHHHHHHHHHHCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCC-HHHHHHHHHhcCC
Confidence            689999999999999999999999999999998653     2222110    13578899999999 8888888875 47


Q ss_pred             CEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCC---CEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       137 d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~---~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      |+||||||....    .++...+++|+.++.++++++++.++   ++||++||.++|+.....+..++. +..+.+.|+.
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~-~~~~~~~Y~~  182 (375)
T 1t2a_A          104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETT-PFYPRSPYGA  182 (375)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTS-CCCCCSHHHH
T ss_pred             CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccC-CCCCCChhHH
Confidence            999999997542    35566789999999999999999887   799999999999866544444432 3345678999


Q ss_pred             HHHHHHHHHHH----cCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHHHHHH
Q 022216          210 AKLQAEQYIRK----SGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       210 sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      +|.++|++++.    ++++++++||+.++||......                   ...+.......+++++|+|++++.
T Consensus       183 sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~  262 (375)
T 1t2a_A          183 AKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWL  262 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHH
Confidence            99999987753    5999999999999998543211                   011112233468999999999999


Q ss_pred             HhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++..+.  .++||++++   +.+++.|+++.+.+
T Consensus       263 ~~~~~~--~~~~ni~~~---~~~s~~e~~~~i~~  291 (375)
T 1t2a_A          263 MLQNDE--PEDFVIATG---EVHSVREFVEKSFL  291 (375)
T ss_dssp             HHHSSS--CCCEEECCS---CCEEHHHHHHHHHH
T ss_pred             HHhcCC--CceEEEeCC---CcccHHHHHHHHHH
Confidence            998765  478999985   89999999998864

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.97  E-value=1.3e-31  Score=235.86  Aligned_cols=220  Identities=16%  Similarity=0.176  Sum_probs=170.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhh-hccccCCCCeEEEEccCCCChHhHHHHhcC----CCCEEEE
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSEAVVC  141 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----~~d~Vi~  141 (301)
                      +||||||+|+||++++++|+++| ++|+++.|+..... ...    .++. +.+|++| .+.+.+++.+    ++|+|||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~----~~~~-~~~d~~~-~~~~~~~~~~~~~~~~d~vi~   74 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNL----VDLN-IADYMDK-EDFLIQIMAGEEFGDVEAIFH   74 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHH----HTSC-CSEEEEH-HHHHHHHHTTCCCSSCCEEEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhc----Ccce-ecccccc-HHHHHHHHhccccCCCcEEEE
Confidence            48999999999999999999999 99999998865431 111    1222 6789998 7888888863    4999999


Q ss_pred             ccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH
Q 022216          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (301)
Q Consensus       142 ~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (301)
                      |||....  .++...+++|+.++.++++++++.++ +||++||.++|+.....+..+.. +..+.+.|+.+|.++|++++
T Consensus        75 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~-~~~p~~~Y~~sK~~~e~~~~  152 (310)
T 1eq2_A           75 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESRE-YEKPLNVYGYSKFLFDEYVR  152 (310)
T ss_dssp             CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGG-GCCCSSHHHHHHHHHHHHHH
T ss_pred             CcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCC-CCCCCChhHHHHHHHHHHHH
Confidence            9996543  34556789999999999999999998 99999999999876544444433 34566789999999998875


Q ss_pred             H----cCCcEEEEecCcccCCCCCC-----ce--------------eecccccc-ccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          220 K----SGINYTIIRPGGLRNEPPTG-----NI--------------IMETEDTL-YEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       220 ~----~~i~~~~irpg~v~~~~~~~-----~~--------------~~~~~~~~-~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      .    .|++++++||++++|+....     ..              ........ ...+++++|+|++++.++..+.  +
T Consensus       153 ~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~--~  230 (310)
T 1eq2_A          153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV--S  230 (310)
T ss_dssp             HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC--C
T ss_pred             HHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCC--C
Confidence            4    48999999999999987531     10              11112223 4578999999999999998765  7


Q ss_pred             cEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          276 KVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       276 ~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++||+.++   +.+++.|+++.+.+
T Consensus       231 ~~~~i~~~---~~~s~~e~~~~i~~  252 (310)
T 1eq2_A          231 GIFNLGTG---RAESFQAVADATLA  252 (310)
T ss_dssp             EEEEESCS---CCBCHHHHHHHC--
T ss_pred             CeEEEeCC---CccCHHHHHHHHHH
Confidence            89999985   89999999998875

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.97  E-value=1.4e-31  Score=236.49  Aligned_cols=219  Identities=18%  Similarity=0.195  Sum_probs=171.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCCEEEEcc
Q 022216           68 KIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCAT  143 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi~~A  143 (301)
                      +||||||+||||++++++|+++  |++|++++|+....        .++.++.+|++| .+++.+++.  + +|+|||||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--------~~~~~~~~D~~d-~~~~~~~~~~~~-~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT--------GGIKFITLDVSN-RDEIDRAVEKYS-IDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC--------TTCCEEECCTTC-HHHHHHHHHHTT-CCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc--------cCceEEEecCCC-HHHHHHHHhhcC-CcEEEECC
Confidence            4899999999999999999999  89999999875432        156789999999 889999887  6 99999999


Q ss_pred             CCCC---CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-
Q 022216          144 GFQP---GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-  219 (301)
Q Consensus       144 g~~~---~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-  219 (301)
                      |...   ..++...+++|+.++.++++++++.++++||++||.++|+........++..+..+.+.|+.+|.++|++++ 
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~  150 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQY  150 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHHH
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHHHHHH
Confidence            8643   234566789999999999999999999999999999999865322112222344567889999999998764 


Q ss_pred             ---HcCCcEEEEecCcccCCCCCC-------------------ceeeccccccccCCCCHHHHHHHHHHHhcCCCC---C
Q 022216          220 ---KSGINYTIIRPGGLRNEPPTG-------------------NIIMETEDTLYEGTISRDQVAEVAVEALLHPES---S  274 (301)
Q Consensus       220 ---~~~i~~~~irpg~v~~~~~~~-------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~---~  274 (301)
                         +.|++++++||++++|+....                   ............++++++|+|++++.++.++..   .
T Consensus       151 ~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~  230 (317)
T 3ajr_A          151 YYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVL  230 (317)
T ss_dssp             HHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSS
T ss_pred             HHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCcccccc
Confidence               469999999999999863210                   011111122334678999999999999987653   2


Q ss_pred             CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          275 YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       275 ~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++||+.+    ..+++.|+++.+.+
T Consensus       231 g~~~~i~~----~~~s~~e~~~~i~~  252 (317)
T 3ajr_A          231 RNGYNVTA----YTFTPSELYSKIKE  252 (317)
T ss_dssp             CSCEECCS----EEECHHHHHHHHHT
T ss_pred             CceEecCC----ccccHHHHHHHHHH
Confidence            47899975    57999999999875

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.97  E-value=4.6e-31  Score=235.35  Aligned_cols=229  Identities=20%  Similarity=0.225  Sum_probs=165.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh---hccccC--CCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TTLSKD--NPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~---~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      ++|+||||||+||||++++++|+++|++|+++.|+.+...   .+....  ..+++++.+|++| .+++.+++.+ +|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLAD-EGSFDEAIKG-CTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTS-TTTTHHHHTT-CSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCC-HHHHHHHHcC-CCEE
Confidence            4789999999999999999999999999999999876322   111101  1358899999999 7889999999 9999


Q ss_pred             EEccCCCCCC--CC-CCceeeehHHHHHHHHHHHHcC-CCEEEEeccccc-ccccCC-CCCCcchh-------h-cchhh
Q 022216          140 VCATGFQPGW--DL-FAPWKVDNFGTVNLVEACRKRG-VNRFILISSILV-NGAAMG-QILNPAYI-------F-LNVFG  205 (301)
Q Consensus       140 i~~Ag~~~~~--~~-~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~-~~~~~~-~~~~~~~~-------~-~~~~~  205 (301)
                      ||+|+.....  ++ ...+++|+.|+.++++++++.+ +++|||+||.++ |+.... .+..+...       + ..+..
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAW  161 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTH
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCccc
Confidence            9999864321  11 2467899999999999999887 899999999874 443211 11122110       0 11345


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCcee---------eccccccc-----cCCCCHHHHHHHHHHH
Q 022216          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNII---------METEDTLY-----EGTISRDQVAEVAVEA  267 (301)
Q Consensus       206 ~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~~---------~~~~~~~~-----~~~v~~~Dva~~~~~~  267 (301)
                      .|+.+|.++|+++.    ++|++++++||++++||.....+.         ..+....+     ..+++++|+|++++.+
T Consensus       162 ~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~~  241 (337)
T 2c29_D          162 MYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYL  241 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHHH
Confidence            79999999998663    469999999999999997543211         00111111     1289999999999988


Q ss_pred             hcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +..+.. ...|++.+    ..+++.|+++.+.+
T Consensus       242 ~~~~~~-~~~~~~~~----~~~s~~e~~~~i~~  269 (337)
T 2c29_D          242 FENPKA-EGRYICSS----HDCIILDLAKMLRE  269 (337)
T ss_dssp             HHCTTC-CEEEEECC----EEEEHHHHHHHHHH
T ss_pred             hcCccc-CceEEEeC----CCCCHHHHHHHHHH
Confidence            876643 34675544    56899999998874

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.97  E-value=4.2e-31  Score=236.52  Aligned_cols=215  Identities=19%  Similarity=0.275  Sum_probs=172.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHC-CC-eEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAK-GF-AVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~-G~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      .+++|+||||||+|+||++++++|+++ |+ +|++++|++.+...+... ...++.++.+|++| .+++.+++.+ +|+|
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~-~D~V   95 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD-LERLNYALEG-VDIC   95 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC-HHHHHHHTTT-CSEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC-HHHHHHHHhc-CCEE
Confidence            457899999999999999999999999 97 999999987665443211 23689999999999 8999999998 9999


Q ss_pred             EEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH
Q 022216          140 VCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       140 i~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (301)
                      |||||...    ..++...+++|+.|+.++++++.+.++++||++||..++               .+.+.|+.+|.++|
T Consensus        96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~---------------~p~~~Y~~sK~~~E  160 (344)
T 2gn4_A           96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA---------------NPINLYGATKLCSD  160 (344)
T ss_dssp             EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS---------------SCCSHHHHHHHHHH
T ss_pred             EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC---------------CCccHHHHHHHHHH
Confidence            99999754    134556789999999999999999999999999997643               12467999999999


Q ss_pred             HHHHH-------cCCcEEEEecCcccCCCCC-----------Cc--eeeccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          216 QYIRK-------SGINYTIIRPGGLRNEPPT-----------GN--IIMETEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       216 ~~~~~-------~~i~~~~irpg~v~~~~~~-----------~~--~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      ++++.       .|++++++|||+++|+...           +.  +... .......+++++|+|++++.++..+. .+
T Consensus       161 ~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v~D~a~~v~~~l~~~~-~g  238 (344)
T 2gn4_A          161 KLFVSANNFKGSSQTQFSVVRYGNVVGSRGSVVPFFKKLVQNKASEIPIT-DIRMTRFWITLDEGVSFVLKSLKRMH-GG  238 (344)
T ss_dssp             HHHHHGGGCCCSSCCEEEEECCCEETTCTTSHHHHHHHHHHHTCCCEEES-CTTCEEEEECHHHHHHHHHHHHHHCC-SS
T ss_pred             HHHHHHHHHhCCCCcEEEEEEeccEECCCCCHHHHHHHHHHcCCCceEEe-CCCeEEeeEEHHHHHHHHHHHHhhcc-CC
Confidence            98764       4799999999999997532           11  1111 12223357999999999999988764 57


Q ss_pred             cEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          276 KVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       276 ~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++|++.+    ..+++.|+++.+.+
T Consensus       239 ~~~~~~~----~~~s~~el~~~i~~  259 (344)
T 2gn4_A          239 EIFVPKI----PSMKMTDLAKALAP  259 (344)
T ss_dssp             CEEEECC----CEEEHHHHHHHHCT
T ss_pred             CEEecCC----CcEEHHHHHHHHHH
Confidence            7898765    46999999998864

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.97  E-value=1.3e-31  Score=234.11  Aligned_cols=208  Identities=18%  Similarity=0.213  Sum_probs=169.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi~~  142 (301)
                      ..|+||||||+||||++++++|+++|++|++++|+                  .+|++| .+++.+++.  + +|+||||
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------~~Dl~d-~~~~~~~~~~~~-~d~vih~   70 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------DLDITN-VLAVNKFFNEKK-PNVVINC   70 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------TCCTTC-HHHHHHHHHHHC-CSEEEEC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------cCCCCC-HHHHHHHHHhcC-CCEEEEC
Confidence            36899999999999999999999999999999885                  279999 888999888  6 9999999


Q ss_pred             cCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH
Q 022216          143 TGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (301)
Q Consensus       143 Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (301)
                      ||....    .++...+++|+.++.++++++++.++ +||++||.++|+.....+..+.. +..+.+.|+.+|.++|+++
T Consensus        71 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~-~~~~~~~Y~~sK~~~E~~~  148 (292)
T 1vl0_A           71 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFD-EVNPQSAYGKTKLEGENFV  148 (292)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTS-CCCCCSHHHHHHHHHHHHH
T ss_pred             CccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCC-CCCCccHHHHHHHHHHHHH
Confidence            996542    35667789999999999999999887 99999999999876544444433 3345678999999999999


Q ss_pred             HHcCCcEEEEecCcccCCCCCCcee-----------eccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCC
Q 022216          219 RKSGINYTIIRPGGLRNEPPTGNII-----------METEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAP  287 (301)
Q Consensus       219 ~~~~i~~~~irpg~v~~~~~~~~~~-----------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~  287 (301)
                      +..+.++++|||+.++|+ ..+.+.           ..........+++++|+|++++.++..+  .+++||+.++   +
T Consensus       149 ~~~~~~~~~lR~~~v~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~--~~~~~~i~~~---~  222 (292)
T 1vl0_A          149 KALNPKYYIVRTAWLYGD-GNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEK--NYGTFHCTCK---G  222 (292)
T ss_dssp             HHHCSSEEEEEECSEESS-SSCHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHT--CCEEEECCCB---S
T ss_pred             HhhCCCeEEEeeeeeeCC-CcChHHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHHHHHhcC--CCcEEEecCC---C
Confidence            888889999999999998 322110           0000112346899999999999888776  5789999885   8


Q ss_pred             CcCHHHHHHHhhc
Q 022216          288 KRSYEDLFGSIKQ  300 (301)
Q Consensus       288 ~~s~~e~~~~i~~  300 (301)
                      .+++.|+++.+.+
T Consensus       223 ~~s~~e~~~~i~~  235 (292)
T 1vl0_A          223 ICSWYDFAVEIFR  235 (292)
T ss_dssp             CEEHHHHHHHHHH
T ss_pred             CccHHHHHHHHHH
Confidence            9999999998865

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.97  E-value=7.8e-31  Score=236.78  Aligned_cols=228  Identities=17%  Similarity=0.115  Sum_probs=173.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-----hhcccc---CCCCeEEEEccCCCChHhHHHHhcC-CC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-----KTTLSK---DNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-----~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~-~~  136 (301)
                      +|+||||||+||||++++++|+++|++|++++|+....     ..+...   ...++.++.+|++| .+++.+++.+ ++
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~   79 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSD-TSNLTRILREVQP   79 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSC-HHHHHHHHHHHCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCC-HHHHHHHHHhcCC
Confidence            47899999999999999999999999999999986542     111100   13578899999999 8888888875 47


Q ss_pred             CEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCC---CEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       137 d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~---~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      |+||||||....    .++...+++|+.++.++++++++.++   ++||++||.++|+.....+..+.. +..+.+.|+.
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~-~~~~~~~Y~~  158 (372)
T 1db3_A           80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETT-PFYPRSPYAV  158 (372)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTS-CCCCCSHHHH
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccC-CCCCCChHHH
Confidence            999999996432    23445678999999999999999887   799999999999876543433332 3345678999


Q ss_pred             HHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHHHHHH
Q 022216          210 AKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       210 sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      +|.++|++++    +++++++++||++++||......                   ...+......++++++|+|++++.
T Consensus       159 sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~  238 (372)
T 1db3_A          159 AKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWM  238 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHH
Confidence            9999998775    35899999999999998543211                   011112233468999999999998


Q ss_pred             HhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++..+.  +++||++++   +.+++.|+++.+.+
T Consensus       239 ~~~~~~--~~~~ni~~~---~~~s~~e~~~~i~~  267 (372)
T 1db3_A          239 MLQQEQ--PEDFVIATG---VQYSVRQFVEMAAA  267 (372)
T ss_dssp             TTSSSS--CCCEEECCC---CCEEHHHHHHHHHH
T ss_pred             HHhcCC--CceEEEcCC---CceeHHHHHHHHHH
Confidence            887764  478999985   88999999999875

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.97  E-value=4e-31  Score=243.30  Aligned_cols=228  Identities=16%  Similarity=0.138  Sum_probs=172.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh---hcc------------ccCCCCeEEEEccCCCChHhH
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK---TTL------------SKDNPSLQIVKADVTEGSAKL  128 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~---~~~------------~~~~~~~~~~~~Dl~~~~~~~  128 (301)
                      ..+|+||||||+|+||++++++|++.|++|++++|+.....   .+.            .....++.++.+|++| .+.+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l  145 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFEC-MDDV  145 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC----CCC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCC-cccC
Confidence            35789999999999999999999999999999999987321   110            0123689999999999 6666


Q ss_pred             HHHhcCCCCEEEEccCCCC-CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC-----CCCCCcchh--h
Q 022216          129 SEAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-----GQILNPAYI--F  200 (301)
Q Consensus       129 ~~~~~~~~d~Vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~-----~~~~~~~~~--~  200 (301)
                      . .+.+ +|+||||||... ..++...+++|+.|+.+++++|++ ++++||++||.++ |...     ..+..+...  +
T Consensus       146 ~-~~~~-~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~~  221 (427)
T 4f6c_A          146 V-LPEN-MDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKG  221 (427)
T ss_dssp             C-CSSC-CSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCSS
T ss_pred             C-CcCC-CCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccccccccC
Confidence            6 6667 999999999754 356778889999999999999998 7789999999998 4321     112222221  1


Q ss_pred             cchhhHHHHHHHHHHHHHHH---cCCcEEEEecCcccCCCCCCcee--------------------ec-cccccccCCCC
Q 022216          201 LNVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTGNII--------------------ME-TEDTLYEGTIS  256 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~---~~i~~~~irpg~v~~~~~~~~~~--------------------~~-~~~~~~~~~v~  256 (301)
                      ..+.+.|+.+|+++|++++.   .|++++++|||+++|+...+...                    .. ........+++
T Consensus       222 ~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  301 (427)
T 4f6c_A          222 QLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSF  301 (427)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCEECCEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccccceEEEee
Confidence            33678899999999998865   79999999999999987554310                    00 00122346899


Q ss_pred             HHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          257 RDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++|+|++++.++..+. .+++||+.++   +.+++.|+++.|++
T Consensus       302 v~DvA~ai~~~~~~~~-~g~~~~l~~~---~~~s~~el~~~i~~  341 (427)
T 4f6c_A          302 VDTTARQIVALAQVNT-PQIIYHVLSP---NKMPVKSLLECVKR  341 (427)
T ss_dssp             HHHHHHHHHHHTTSCC-CCSEEEESCS---CCEEHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCC-CCCEEEecCC---CCCcHHHHHHHHHH
Confidence            9999999999998877 7899999996   89999999999875

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.97  E-value=1.4e-31  Score=234.72  Aligned_cols=212  Identities=11%  Similarity=0.071  Sum_probs=171.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+||||||+|+||++++++|+ +|++|++++|+..              ++.+|++| .+++.+++.+ ++|+|||+||.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~--------------~~~~D~~d-~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK--------------EFCGDFSN-PKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS--------------SSCCCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc--------------cccccCCC-HHHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999999 8999999998752              24689999 8888888874 59999999996


Q ss_pred             CC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       146 ~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ..    ..++...+++|+.++.++++++++.++ ||||+||.++|+...+.+..+.. +..+.+.|+.+|.++|++++..
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~-~~~p~~~Y~~sK~~~E~~~~~~  142 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETD-ATSPLNVYGKTKLAGEKALQDN  142 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTS-CCCCSSHHHHHHHHHHHHHHHH
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCC-CCCCccHHHHHHHHHHHHHHHh
Confidence            54    245667789999999999999998887 89999999999876554444433 3455678999999999999888


Q ss_pred             CCcEEEEecCcccCCCCCCce------------eeccccccccCCCCHHHHHHHHHHHhcCCC--C-CCcEEEeecCCCC
Q 022216          222 GINYTIIRPGGLRNEPPTGNI------------IMETEDTLYEGTISRDQVAEVAVEALLHPE--S-SYKVVEIISRVDA  286 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~~------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~-~~~~~~v~~~~~~  286 (301)
                      ..+++++||++++|+...+.+            ..... .....+++++|+|++++.++..+.  . .+++||++++   
T Consensus       143 ~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~i~~~---  218 (299)
T 1n2s_A          143 CPKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIN-DQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAG---  218 (299)
T ss_dssp             CSSEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEEC-SCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCB---
T ss_pred             CCCeEEEeeeeecCCCcCcHHHHHHHHHhcCCCEEeec-CcccCCeeHHHHHHHHHHHHHHhccccccCceEEEeCC---
Confidence            889999999999998643211            10111 133568999999999998887652  2 4789999985   


Q ss_pred             CCcCHHHHHHHhhc
Q 022216          287 PKRSYEDLFGSIKQ  300 (301)
Q Consensus       287 ~~~s~~e~~~~i~~  300 (301)
                      +.+++.|+++.+.+
T Consensus       219 ~~~s~~e~~~~i~~  232 (299)
T 1n2s_A          219 GTTTWHDYAALVFD  232 (299)
T ss_dssp             SCEEHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            89999999998865

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.97  E-value=3.5e-31  Score=236.49  Aligned_cols=228  Identities=12%  Similarity=0.127  Sum_probs=175.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCC-------CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-C
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKG-------FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-D  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~  134 (301)
                      .+++|+||||||+||||++++++|+++|       ++|++++|+.......   ...++.++.+|++| .+++.+++. +
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~---~~~~~~~~~~Dl~d-~~~~~~~~~~~   86 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAG---FSGAVDARAADLSA-PGEAEKLVEAR   86 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTT---CCSEEEEEECCTTS-TTHHHHHHHTC
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccc---cCCceeEEEcCCCC-HHHHHHHHhcC
Confidence            4578999999999999999999999999       8999999986543221   23578899999999 788888884 7


Q ss_pred             CCCEEEEccCCCC---CCCCCCceeeehHHHHHHHHHHHHcC-----CCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          135 DSEAVVCATGFQP---GWDLFAPWKVDNFGTVNLVEACRKRG-----VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~---~~~~~~~~~~N~~g~~~l~~a~~~~~-----~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                       +|+||||||...   ..++...+++|+.|+.++++++++.+     +++||++||.++|+.....+..++. +..+.+.
T Consensus        87 -~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~-~~~~~~~  164 (342)
T 2hrz_A           87 -PDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEF-HTTPLTS  164 (342)
T ss_dssp             -CSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTC-CCCCSSH
T ss_pred             -CCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCC-CCCCcch
Confidence             999999999654   23566778999999999999998775     7899999999999865443444433 3345678


Q ss_pred             HHHHHHHHHHHHHH----cCCcEEEEecCcccC-CCCCC----ce--------------eeccccccccCCCCHHHHHHH
Q 022216          207 TLIAKLQAEQYIRK----SGINYTIIRPGGLRN-EPPTG----NI--------------IMETEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       207 y~~sK~~~e~~~~~----~~i~~~~irpg~v~~-~~~~~----~~--------------~~~~~~~~~~~~v~~~Dva~~  263 (301)
                      |+.+|.++|++++.    .+++++++|++.+++ |....    .+              ...........+++++|+|++
T Consensus       165 Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~  244 (342)
T 2hrz_A          165 YGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGF  244 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHH
Confidence            99999999988754    378999999999887 43211    00              011111222346899999999


Q ss_pred             HHHHhcCCCC---CCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          264 AVEALLHPES---SYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       264 ~~~~l~~~~~---~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++.++..+..   .+++||+.+    +.+++.|+++.|.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~ni~g----~~~s~~e~~~~i~~  280 (342)
T 2hrz_A          245 LIHGAMIDVEKVGPRRNLSMPG----LSATVGEQIEALRK  280 (342)
T ss_dssp             HHHHHHSCHHHHCSCCEEECCC----EEEEHHHHHHHHHH
T ss_pred             HHHHHhccccccCCccEEEcCC----CCCCHHHHHHHHHH
Confidence            9999887643   467999953    67999999998864

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.97  E-value=1.3e-31  Score=231.45  Aligned_cols=201  Identities=20%  Similarity=0.202  Sum_probs=163.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +|+||||||+|+||++++++|+++|++|++++|++.+..      ..++.++.+|++| .+.+.+++.+ +|+||||||.
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~Dl~d-~~~~~~~~~~-~d~vi~~a~~   73 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------EAHEEIVACDLAD-AQAVHDLVKD-CDGIIHLGGV   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC------CTTEEECCCCTTC-HHHHHHHHTT-CSEEEECCSC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc------CCCccEEEccCCC-HHHHHHHHcC-CCEEEECCcC
Confidence            368999999999999999999999999999999875421      2467899999999 8999999999 9999999997


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC-CCCCCcchhhcchhhHHHHHHHHHHHHHH----H
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-GQILNPAYIFLNVFGLTLIAKLQAEQYIR----K  220 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~-~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~  220 (301)
                      ....++...+++|+.++.++++++++.++++||++||..+|+... ..+..+. .+..+...|+.+|.++|++++    +
T Consensus        74 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-~~~~~~~~Y~~sK~~~e~~~~~~~~~  152 (267)
T 3ay3_A           74 SVERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-VPRRPDSLYGLSKCFGEDLASLYYHK  152 (267)
T ss_dssp             CSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-SCCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            755566778899999999999999998889999999999997643 2233333 234556789999999998775    3


Q ss_pred             cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          221 SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       221 ~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      .+++++++||+++++...        .......+++++|+|++++.++..+...+.++++.++
T Consensus       153 ~gi~~~~lrp~~v~~~~~--------~~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~  207 (267)
T 3ay3_A          153 FDIETLNIRIGSCFPKPK--------DARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASA  207 (267)
T ss_dssp             TCCCEEEEEECBCSSSCC--------SHHHHHHBCCHHHHHHHHHHHHHSSCCCEEEEEECCS
T ss_pred             cCCCEEEEeceeecCCCC--------CCCeeeccccHHHHHHHHHHHHhCCCCCceeEecCCC
Confidence            699999999999974321        1122346899999999999999887655677887764

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.97  E-value=1.4e-30  Score=252.08  Aligned_cols=230  Identities=15%  Similarity=0.185  Sum_probs=179.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|+||||||+||||++++++|+++ |++|++++|+......+.  ...++.++.+|++|..+.+.+++.+ +|+||||
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~--~~~~v~~v~~Dl~d~~~~~~~~~~~-~D~Vih~  389 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL--NHPHFHFVEGDISIHSEWIEYHVKK-CDVVLPL  389 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT--TCTTEEEEECCTTTCHHHHHHHHHH-CSEEEEC
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc--cCCceEEEECCCCCcHHHHHHhhcC-CCEEEEC
Confidence            46789999999999999999999998 899999999877655443  2467999999999933347778888 9999999


Q ss_pred             cCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh------hcchhhHHHHHHH
Q 022216          143 TGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI------FLNVFGLTLIAKL  212 (301)
Q Consensus       143 Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~------~~~~~~~y~~sK~  212 (301)
                      ||....    .++...+++|+.++.++++++++.+ ++||++||.++|+.....+..++.+      ...+.+.|+.+|.
T Consensus       390 Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~  468 (660)
T 1z7e_A          390 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQ  468 (660)
T ss_dssp             CCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHHH
T ss_pred             ceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHHH
Confidence            997542    3455678899999999999999988 8999999999998765444333321      1245568999999


Q ss_pred             HHHHHHH----HcCCcEEEEecCcccCCCCCC---------ce--------------eeccccccccCCCCHHHHHHHHH
Q 022216          213 QAEQYIR----KSGINYTIIRPGGLRNEPPTG---------NI--------------IMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       213 ~~e~~~~----~~~i~~~~irpg~v~~~~~~~---------~~--------------~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      ++|++++    +.|++++++|||+++|+....         ..              ...........+++++|+|++++
T Consensus       469 ~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~  548 (660)
T 1z7e_A          469 LLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY  548 (660)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHH
Confidence            9998874    469999999999999987532         10              11111223346899999999999


Q ss_pred             HHhcCCC--CCCcEEEeecCCCCC-CcCHHHHHHHhhc
Q 022216          266 EALLHPE--SSYKVVEIISRVDAP-KRSYEDLFGSIKQ  300 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~~~~~~-~~s~~e~~~~i~~  300 (301)
                      .++..+.  ..+++||+.++   + .+++.|+++.+.+
T Consensus       549 ~~l~~~~~~~~g~~~ni~~~---~~~~s~~el~~~i~~  583 (660)
T 1z7e_A          549 RIIENAGNRCDGEIINIGNP---ENEASIEELGEMLLA  583 (660)
T ss_dssp             HHHHCGGGTTTTEEEEECCG---GGEEEHHHHHHHHHH
T ss_pred             HHHhCccccCCCeEEEECCC---CCCcCHHHHHHHHHH
Confidence            9988764  46789999884   5 7999999998864

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.97  E-value=9.2e-31  Score=231.66  Aligned_cols=228  Identities=18%  Similarity=0.177  Sum_probs=161.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCch---hhhccccC--CCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDK---AKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~---~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      +|+||||||+||||++++++|+++|++|+++.| +++.   ...+....  ..++.++.+|++| .+++.+++.+ +|+|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~-~d~v   78 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSN-PDSFAAAIEG-CVGI   78 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTC-GGGGHHHHTT-CSEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCC-HHHHHHHHcC-CCEE
Confidence            578999999999999999999999999999988 5432   11111000  1357889999999 8999999999 9999


Q ss_pred             EEccCCCCC--CCC-CCceeeehHHHHHHHHHHHHc-CCCEEEEecccccc-cccC-CCCCCcchh-------hcchhh-
Q 022216          140 VCATGFQPG--WDL-FAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVN-GAAM-GQILNPAYI-------FLNVFG-  205 (301)
Q Consensus       140 i~~Ag~~~~--~~~-~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~-~~~~-~~~~~~~~~-------~~~~~~-  205 (301)
                      ||||+....  .++ ..++++|+.|+.++++++++. ++++||++||.+++ +... ..+..+...       +..+.. 
T Consensus        79 ih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~  158 (322)
T 2p4h_X           79 FHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGW  158 (322)
T ss_dssp             EECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTH
T ss_pred             EEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCcccc
Confidence            999975321  222 337899999999999999987 78999999998754 3211 111122110       112222 


Q ss_pred             HHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCcee---------eccccc----cccCCCCHHHHHHHHHHHh
Q 022216          206 LTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNII---------METEDT----LYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       206 ~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~~---------~~~~~~----~~~~~v~~~Dva~~~~~~l  268 (301)
                      .|+.+|.++|+++.    ++|++++++||++++||.......         ......    ....+++++|+|++++.++
T Consensus       159 ~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~~  238 (322)
T 2p4h_X          159 NYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLL  238 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHHh
Confidence            69999999998764    368999999999999997543210         001000    0114899999999999888


Q ss_pred             cCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          269 LHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ..+...+ .|+ +++   +.+++.|+++.+.+
T Consensus       239 ~~~~~~g-~~~-~~~---~~~s~~e~~~~i~~  265 (322)
T 2p4h_X          239 ENSVPGG-RYN-CSP---FIVPIEEMSQLLSA  265 (322)
T ss_dssp             HSCCCCE-EEE-CCC---EEEEHHHHHHHHHH
T ss_pred             hCcCCCC-CEE-EcC---CCCCHHHHHHHHHH
Confidence            7655444 477 443   78999999998864

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.97  E-value=1.6e-30  Score=235.78  Aligned_cols=226  Identities=15%  Similarity=0.075  Sum_probs=175.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-----hhhcccc---CCC-CeEEEEccCCCChHhHHHHhcC-CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLSK---DNP-SLQIVKADVTEGSAKLSEAIGD-DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-----~~~~~~~---~~~-~~~~~~~Dl~~~~~~~~~~~~~-~~  136 (301)
                      |+||||||+||||++++++|+++|++|++++|+...     ++.+...   ... ++.++.+|++| .+++.+++.+ ++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~  107 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTD-ASSLRRWIDVIKP  107 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTC-HHHHHHHHHHHCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCC-HHHHHHHHHhcCC
Confidence            689999999999999999999999999999998754     2222110   012 78999999999 8888888875 47


Q ss_pred             CEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCC-----EEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVN-----RFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       137 d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~-----~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |+||||||....    .++...+++|+.++.++++++++.+++     +||++||.++|+.... +..++. +..+.+.|
T Consensus       108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~-~~~~~~~Y  185 (381)
T 1n7h_A          108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETT-PFHPRSPY  185 (381)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTS-CCCCCSHH
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCC-CCCCCCch
Confidence            999999997542    356667899999999999999877654     9999999999987654 433332 34556789


Q ss_pred             HHHHHHHHHHHHH----cCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHHHH
Q 022216          208 LIAKLQAEQYIRK----SGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       208 ~~sK~~~e~~~~~----~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~~~  264 (301)
                      +.+|.++|++++.    ++++++++||++++||......                   ...+.......+++++|+|+++
T Consensus       186 ~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~  265 (381)
T 1n7h_A          186 AASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAM  265 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHH
Confidence            9999999987753    5899999999999998543211                   0111112334689999999999


Q ss_pred             HHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          265 VEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       265 ~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.++..+.  +++||++++   +.+++.|+++.+.+
T Consensus       266 ~~~~~~~~--~~~~~i~~~---~~~s~~e~~~~i~~  296 (381)
T 1n7h_A          266 WLMLQQEK--PDDYVVATE---EGHTVEEFLDVSFG  296 (381)
T ss_dssp             HHHHTSSS--CCEEEECCS---CEEEHHHHHHHHHH
T ss_pred             HHHHhCCC--CCeEEeeCC---CCCcHHHHHHHHHH
Confidence            98888764  478999985   89999999998864

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.97  E-value=7.3e-31  Score=234.03  Aligned_cols=227  Identities=22%  Similarity=0.210  Sum_probs=162.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc-----cccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~-----~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      +|+||||||+||||++++++|+++|++|+++.|+.+.....     .. ...++.++.+|++| .+++.+++.+ +|+||
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d-~~~~~~~~~~-~D~Vi   85 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTD-ELSFEAPIAG-CDFVF   85 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTT-SSSSHHHHTT-CSEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCC-hHHHHHHHcC-CCEEE
Confidence            68999999999999999999999999999999986543211     11 12468899999999 7889999999 99999


Q ss_pred             EccCCCCC--CCC-CCceeeehHHHHHHHHHHHHcC-CCEEEEeccccc-ccccC-C--CCCCcchh-------hcchh-
Q 022216          141 CATGFQPG--WDL-FAPWKVDNFGTVNLVEACRKRG-VNRFILISSILV-NGAAM-G--QILNPAYI-------FLNVF-  204 (301)
Q Consensus       141 ~~Ag~~~~--~~~-~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~-~~~~~-~--~~~~~~~~-------~~~~~-  204 (301)
                      |+|+....  .++ ..++++|+.|+.+++++|++.+ ++||||+||.++ |+... +  .+..+...       +.++. 
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (338)
T 2rh8_A           86 HVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPT  165 (338)
T ss_dssp             EESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCC
T ss_pred             EeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCcc
Confidence            99986432  233 3478999999999999999985 899999999874 33211 1  12222211       11111 


Q ss_pred             hHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCcee---------eccccccc------------cCCCCHHH
Q 022216          205 GLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNII---------METEDTLY------------EGTISRDQ  259 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~~---------~~~~~~~~------------~~~v~~~D  259 (301)
                      ..|+.+|.++|++++    ++|+++++|||++++||.......         .......+            .++++++|
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~D  245 (338)
T 2rh8_A          166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVED  245 (338)
T ss_dssp             CCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEEEHHH
Confidence            158899999998664    369999999999999997543211         01100000            15899999


Q ss_pred             HHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          260 VAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       260 va~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +|++++.++..+.. ...|++.+    ..+++.|+++.+.+
T Consensus       246 va~a~~~~~~~~~~-~~~~~~~~----~~~s~~e~~~~l~~  281 (338)
T 2rh8_A          246 VCRAHIFVAEKESA-SGRYICCA----ANTSVPELAKFLSK  281 (338)
T ss_dssp             HHHHHHHHHHCTTC-CEEEEECS----EEECHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCc-CCcEEEec----CCCCHHHHHHHHHH
Confidence            99999988876543 44677654    45899999998864

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.97  E-value=6e-30  Score=222.71  Aligned_cols=201  Identities=20%  Similarity=0.237  Sum_probs=161.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +||||||+|+||++++++|+++  |++|++++|++++...+..   .++.++.+|++| .+++.+++.+ +|+|||+|+.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~D~~d-~~~~~~~~~~-~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA---QGITVRQADYGD-EAALTSALQG-VEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH---TTCEEEECCTTC-HHHHHHHTTT-CSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc---CCCeEEEcCCCC-HHHHHHHHhC-CCEEEEeCCC
Confidence            4899999999999999999999  9999999998776554332   478899999999 8999999999 9999999985


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcE
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINY  225 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~  225 (301)
                      ..        +.|+.++.++++++++.++++||++||..+|.    .           ...|+.+|.++|+++++.++++
T Consensus        76 ~~--------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~----~-----------~~~y~~sK~~~e~~~~~~~~~~  132 (286)
T 2zcu_A           76 EV--------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT----S-----------PLGLADEHIETEKMLADSGIVY  132 (286)
T ss_dssp             --------------CHHHHHHHHHHHHTCCEEEEEEETTTTT----C-----------CSTTHHHHHHHHHHHHHHCSEE
T ss_pred             Cc--------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC----C-----------cchhHHHHHHHHHHHHHcCCCe
Confidence            31        25889999999999999999999999998761    0           0257899999999999899999


Q ss_pred             EEEecCcccCCCC--------CCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHH
Q 022216          226 TIIRPGGLRNEPP--------TGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGS  297 (301)
Q Consensus       226 ~~irpg~v~~~~~--------~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~  297 (301)
                      +++||+.+.++..        .+.+... .......+++++|+|++++.++..+...+++||+.++   +.+++.|+++.
T Consensus       133 ~ilrp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~~---~~~s~~e~~~~  208 (286)
T 2zcu_A          133 TLLRNGWYSENYLASAPAALEHGVFIGA-AGDGKIASATRADYAAAAARVISEAGHEGKVYELAGD---SAWTLTQLAAE  208 (286)
T ss_dssp             EEEEECCBHHHHHTTHHHHHHHTEEEES-CTTCCBCCBCHHHHHHHHHHHHHSSSCTTCEEEECCS---SCBCHHHHHHH
T ss_pred             EEEeChHHhhhhHHHhHHhhcCCceecc-CCCCccccccHHHHHHHHHHHhcCCCCCCceEEEeCC---CcCCHHHHHHH
Confidence            9999998776531        1112222 2233346899999999999999877667889999985   89999999998


Q ss_pred             hhc
Q 022216          298 IKQ  300 (301)
Q Consensus       298 i~~  300 (301)
                      +.+
T Consensus       209 i~~  211 (286)
T 2zcu_A          209 LTK  211 (286)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.97  E-value=1e-30  Score=222.29  Aligned_cols=200  Identities=17%  Similarity=0.209  Sum_probs=158.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .+++|+||||||+|+||++++++|+++|+  +|++++|++++.....   ..++.++.+|++| .+++.+++.+ +|+||
T Consensus        15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~---~~~~~~~~~D~~d-~~~~~~~~~~-~d~vi   89 (242)
T 2bka_A           15 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---YKNVNQEVVDFEK-LDDYASAFQG-HDVGF   89 (242)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---GGGCEEEECCGGG-GGGGGGGGSS-CSEEE
T ss_pred             hhcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc---cCCceEEecCcCC-HHHHHHHhcC-CCEEE
Confidence            45689999999999999999999999999  9999999987654332   2468899999999 8899999998 99999


Q ss_pred             EccCCCCC-CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH
Q 022216          141 CATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (301)
Q Consensus       141 ~~Ag~~~~-~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (301)
                      ||||.... .++...+++|+.++.++++++++.++++||++||.++|+.              +...|+.+|.++|++++
T Consensus        90 ~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~--------------~~~~Y~~sK~~~e~~~~  155 (242)
T 2bka_A           90 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS--------------SNFLYLQVKGEVEAKVE  155 (242)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------CSSHHHHHHHHHHHHHH
T ss_pred             ECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC--------------CcchHHHHHHHHHHHHH
Confidence            99996432 2345677899999999999999998899999999987752              12568999999999999


Q ss_pred             HcCC-cEEEEecCcccCCCCCCcee---e----cccc--ccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeec
Q 022216          220 KSGI-NYTIIRPGGLRNEPPTGNII---M----ETED--TLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       220 ~~~i-~~~~irpg~v~~~~~~~~~~---~----~~~~--~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~  282 (301)
                      ..++ ++++||||+++|+.......   .    ....  .....+++++|+|++++.++.++.. +..+.+.+
T Consensus       156 ~~~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~-~~~~~~~~  227 (242)
T 2bka_A          156 ELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD-KQMELLEN  227 (242)
T ss_dssp             TTCCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCC-SSEEEEEH
T ss_pred             hcCCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccCccccCCcccCHHHHHHHHHHHHhCccc-cCeeEeeH
Confidence            8999 69999999999986432110   0    0000  0012478999999999988887653 44555544

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.97  E-value=2.2e-30  Score=220.73  Aligned_cols=207  Identities=19%  Similarity=0.155  Sum_probs=151.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHH-------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEA-------  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~-------  131 (301)
                      +++++|++|||||+++||++++++|+++|++|++.+|+.+++++...   ....++.++++|++| ++++.+.       
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK-KKDVEEFVRRTFET   81 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999877665432   245789999999999 6555544       


Q ss_pred             hcCCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          132 IGDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       132 ~~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                      ++. +|++|||||+...         ++|+..+++|+.|++++++++    ++.+.++||++||...+.   +.+     
T Consensus        82 ~G~-iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~---~~~-----  152 (254)
T 4fn4_A           82 YSR-IDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR---GGF-----  152 (254)
T ss_dssp             HSC-CCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC---SSS-----
T ss_pred             cCC-CCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC---CCC-----
Confidence            445 9999999996431         357778999999999999887    445668999999987432   222     


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc--------ccccccCCCCHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET--------EDTLYEGTISRDQVAEV  263 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~--------~~~~~~~~v~~~Dva~~  263 (301)
                          ....|..+|.+...+.+       .+||++|.|.||++.|++.........        .......+..++|+|++
T Consensus       153 ----~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~R~g~pediA~~  228 (254)
T 4fn4_A          153 ----AGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANV  228 (254)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCCCCBCHHHHHHH
T ss_pred             ----CChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCCCCcCHHHHHHH
Confidence                13556777777665443       479999999999999987544321110        00112345689999999


Q ss_pred             HHHHhcCCCCCCcEEEeecC
Q 022216          264 AVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       264 ~~~~l~~~~~~~~~~~v~~~  283 (301)
                      + .+|.++.+.+.+.+....
T Consensus       229 v-~fLaSd~a~~iTG~~i~V  247 (254)
T 4fn4_A          229 I-VFLASDEASFVNGDAVVV  247 (254)
T ss_dssp             H-HHHHSGGGTTCCSCEEEE
T ss_pred             H-HHHhCchhcCCcCCEEEe
Confidence            8 566666655544443333

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.97  E-value=1.5e-29  Score=226.55  Aligned_cols=213  Identities=16%  Similarity=0.158  Sum_probs=165.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch----hhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----AKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d  137 (301)
                      |++|+||||||||+||++++++|+++|++|++++|+...    ...+......+++++.+|++| .+++.+++.  + +|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d-~~~l~~~~~~~~-~d   85 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE-QEAMEKILKEHE-ID   85 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHHHTT-CC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCC-HHHHHHHHhhCC-CC
Confidence            456899999999999999999999999999999998722    221111123689999999999 899999999  8 99


Q ss_pred             EEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHH
Q 022216          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQ  216 (301)
Q Consensus       138 ~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~  216 (301)
                      +|||+||.           .|+.++.+++++|++.+ +++||+ |   .||....    + ..+..+...|+.+|..+|+
T Consensus        86 ~Vi~~a~~-----------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~----e-~~~~~p~~~y~~sK~~~e~  145 (346)
T 3i6i_A           86 IVVSTVGG-----------ESILDQIALVKAMKAVGTIKRFLP-S---EFGHDVN----R-ADPVEPGLNMYREKRRVRQ  145 (346)
T ss_dssp             EEEECCCG-----------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSSCTT----T-CCCCTTHHHHHHHHHHHHH
T ss_pred             EEEECCch-----------hhHHHHHHHHHHHHHcCCceEEee-c---ccCCCCC----c-cCcCCCcchHHHHHHHHHH
Confidence            99999986           28999999999999999 999986 4   3443211    1 1123456789999999999


Q ss_pred             HHHHcCCcEEEEecCcccCCCCCC------------ceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 022216          217 YIRKSGINYTIIRPGGLRNEPPTG------------NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRV  284 (301)
Q Consensus       217 ~~~~~~i~~~~irpg~v~~~~~~~------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~  284 (301)
                      ++++.|++++++|||+++|.....            .+...........+++++|+|++++.++..+...++++++.+. 
T Consensus       146 ~l~~~g~~~tivrpg~~~g~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~i~g~-  224 (346)
T 3i6i_A          146 LVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPS-  224 (346)
T ss_dssp             HHHHTTCCBEEEECCEESSCCCSCC-----CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGGTTEEEECCCG-
T ss_pred             HHHHcCCCEEEEEecccccccCccccccccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccccCeEEEEeCC-
Confidence            999999999999999999864221            1222222333446899999999999999988767888998842 


Q ss_pred             CCCCcCHHHHHHHhhc
Q 022216          285 DAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       285 ~~~~~s~~e~~~~i~~  300 (301)
                       ++.+|+.|+++.+++
T Consensus       225 -~~~~s~~e~~~~~~~  239 (346)
T 3i6i_A          225 -CNCLNINELASVWEK  239 (346)
T ss_dssp             -GGEECHHHHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHH
Confidence             389999999999875

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.97  E-value=4e-30  Score=241.69  Aligned_cols=227  Identities=16%  Similarity=0.136  Sum_probs=172.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh---c------------cccCCCCeEEEEccCCCChHhHH
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---T------------LSKDNPSLQIVKADVTEGSAKLS  129 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~---~------------~~~~~~~~~~~~~Dl~~~~~~~~  129 (301)
                      .+|+|||||||||||++++++|++.|++|++++|+..+...   +            ......++.++.+|++| .+.+.
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~  227 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFEC-MDDVV  227 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTB-CSSCC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcc-cccCC
Confidence            35799999999999999999999999999999999873211   0            00124689999999999 56666


Q ss_pred             HHhcCCCCEEEEccCCCC-CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC-----CCCCCcchh--hc
Q 022216          130 EAIGDDSEAVVCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-----GQILNPAYI--FL  201 (301)
Q Consensus       130 ~~~~~~~d~Vi~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~-----~~~~~~~~~--~~  201 (301)
                       .+.+ +|+|||||+... ..++...+++|+.++.+++++|++ +.++|||+||.++ |...     ..+..+...  ..
T Consensus       228 -~~~~-~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~~  303 (508)
T 4f6l_B          228 -LPEN-MDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQ  303 (508)
T ss_dssp             -CSSC-CSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCSSB
T ss_pred             -CccC-CCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCcccccccccccc
Confidence             5666 999999999654 345677889999999999999998 6689999999998 4321     112222221  13


Q ss_pred             chhhHHHHHHHHHHHHHHH---cCCcEEEEecCcccCCCCCCce--------------------eec-cccccccCCCCH
Q 022216          202 NVFGLTLIAKLQAEQYIRK---SGINYTIIRPGGLRNEPPTGNI--------------------IME-TEDTLYEGTISR  257 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~~---~~i~~~~irpg~v~~~~~~~~~--------------------~~~-~~~~~~~~~v~~  257 (301)
                      .+.+.|+.+|+.+|++++.   .|++++++|||.++|+...+..                    ... ........++++
T Consensus       304 ~~~~~Y~~sK~~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~v~v  383 (508)
T 4f6l_B          304 LLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFV  383 (508)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHTTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEEECEEH
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceEEEEcH
Confidence            3578899999999998865   7999999999999998654421                    001 111233468999


Q ss_pred             HHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          258 DQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       258 ~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +|+|++++.++..+. .+++||+.++   +.+++.|+++.|.+
T Consensus       384 ~DvA~ai~~~~~~~~-~~~~~nl~~~---~~~s~~el~~~i~~  422 (508)
T 4f6l_B          384 DTTARQIVALAQVNT-PQIIYHVLSP---NKMPVKSLLECVKR  422 (508)
T ss_dssp             HHHHHHHHHHTTBCC-SCSEEEESCS---CEEEHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCC-CCCEEEeCCC---CCCCHHHHHHHHHH
Confidence            999999999998776 7889999996   89999999999875

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.97  E-value=1e-29  Score=220.67  Aligned_cols=223  Identities=13%  Similarity=0.120  Sum_probs=168.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhc------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      ..+++|+||||||+|+||++++++|+++|++|++++|+.+..++....  ...++.++.+|++| .+++.+++.      
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   90 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKH   90 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            346789999999999999999999999999999999987654433211  12378999999999 777776664      


Q ss_pred             -CCCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcch
Q 022216          134 -DDSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                       + +|+||||||....          ++++..+++|+.++.++++++.+    .+.++||++||..+|....        
T Consensus        91 ~~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------  161 (278)
T 2bgk_A           91 GK-LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE--------  161 (278)
T ss_dssp             SC-CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT--------
T ss_pred             CC-CCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC--------
Confidence             5 9999999996532          23445789999999999998854    3567999999998764321        


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec---------cccccccCCCCHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME---------TEDTLYEGTISRDQVAE  262 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~---------~~~~~~~~~v~~~Dva~  262 (301)
                         .+...|+.+|.+.|.+.+       ..|+++++|+||+++|++........         ........+++++|+|+
T Consensus       162 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~  238 (278)
T 2bgk_A          162 ---GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVAD  238 (278)
T ss_dssp             ---TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHH
T ss_pred             ---CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcccccccccCCHHHHHH
Confidence               124679999999987664       25899999999999998754321100         00111234789999999


Q ss_pred             HHHHHhcCC--CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          263 VAVEALLHP--ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       263 ~~~~~l~~~--~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++.++..+  ...++++++.++   ...++.|+++.+.+
T Consensus       239 ~~~~l~~~~~~~~~G~~~~v~gg---~~~~~~e~~~~i~~  275 (278)
T 2bgk_A          239 AVAYLAGDESKYVSGLNLVIDGG---YTRTNPAFPTALKH  275 (278)
T ss_dssp             HHHHHHSGGGTTCCSCEEEESTT---GGGCCTHHHHHSCS
T ss_pred             HHHHHcCcccccCCCCEEEECCc---ccccCCccchhhhh
Confidence            998777543  245778888875   88999999998875

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.97  E-value=8.3e-30  Score=215.02  Aligned_cols=202  Identities=19%  Similarity=0.182  Sum_probs=147.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi~  141 (301)
                      ++||++|||||+++||++++++|+++|++|++.+|+.+.+++.   ...++..+.+|++| ++++++.+..  ++|++||
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~---~~~~~~~~~~Dv~~-~~~v~~~~~~~g~iDiLVN   84 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP---RHPRIRREELDITD-SQRLQRLFEALPRLDVLVN   84 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC---CCTTEEEEECCTTC-HHHHHHHHHHCSCCSEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh---hcCCeEEEEecCCC-HHHHHHHHHhcCCCCEEEE
Confidence            4799999999999999999999999999999999998776643   34689999999999 7666665543  4999999


Q ss_pred             ccCCCCC------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHH
Q 022216          142 ATGFQPG------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       142 ~Ag~~~~------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (301)
                      |||+..+      ++|+..+++|+.|++.+++++.    +.+ ++||++||+....   +.+         ....|..+|
T Consensus        85 NAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~---~~~---------~~~~Y~asK  151 (242)
T 4b79_A           85 NAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMYSTF---GSA---------DRPAYSASK  151 (242)
T ss_dssp             CCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGGGTS---CCS---------SCHHHHHHH
T ss_pred             CCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeeccccC---CCC---------CCHHHHHHH
Confidence            9997542      4577889999999999999873    334 7999999987432   211         135677777


Q ss_pred             HHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHHHHHHhcCCCCCCcEE
Q 022216          212 LQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEVAVEALLHPESSYKVV  278 (301)
Q Consensus       212 ~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~  278 (301)
                      .+...+.+       .+|||+|.|.||++.||+.........      ...+...+-.++|+|+++ .+|.++.+.+.+.
T Consensus       152 aav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v-~fLaSd~a~~iTG  230 (242)
T 4b79_A          152 GAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAA-AFLCGPGASFVTG  230 (242)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCSCBCHHHHHHHH-HHHTSGGGTTCCS
T ss_pred             HHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCCCcCHHHHHHHH-HHHhCchhcCccC
Confidence            77765443       479999999999999997543221100      111223456899999998 5677776655544


Q ss_pred             EeecC
Q 022216          279 EIISR  283 (301)
Q Consensus       279 ~v~~~  283 (301)
                      +....
T Consensus       231 ~~l~V  235 (242)
T 4b79_A          231 AVLAV  235 (242)
T ss_dssp             CEEEE
T ss_pred             ceEEE
Confidence            44333

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.96  E-value=9.1e-29  Score=207.62  Aligned_cols=200  Identities=18%  Similarity=0.239  Sum_probs=156.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHH-HCCCeEEEEEeCCc-hhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLL-AKGFAVKAGVRDLD-KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~-~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +|+||||||+|+||++++++|+ +.|++|++++|+++ +++++.. ...++.++.+|++| .+++.+++.+ +|+|||||
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~D~~d-~~~~~~~~~~-~d~vv~~a   81 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII-DHERVTVIEGSFQN-PGXLEQAVTN-AEVVFVGA   81 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH-TSTTEEEEECCTTC-HHHHHHHHTT-CSEEEESC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc-CCCceEEEECCCCC-HHHHHHHHcC-CCEEEEcC
Confidence            3569999999999999999999 89999999999987 6655421 34689999999999 8999999999 99999999


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhh-HHHHHHHHHHHHHHHcC
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG-LTLIAKLQAEQYIRKSG  222 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~-~y~~sK~~~e~~~~~~~  222 (301)
                      |..           |+. +.++++++++.++++||++||..+|+.....   .......... .|+.+|..+|+++++.+
T Consensus        82 g~~-----------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~---~~~~~~~~~~~~y~~~K~~~e~~~~~~~  146 (221)
T 3r6d_A           82 MES-----------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA---LEKWTFDNLPISYVQGERQARNVLRESN  146 (221)
T ss_dssp             CCC-----------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH---HHHHHHHTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCC-----------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc---cccccccccccHHHHHHHHHHHHHHhCC
Confidence            853           566 9999999999999999999999887643211   0000111223 79999999999999999


Q ss_pred             CcEEEEecCcccCCCCCCceeeccccccc-cCCCCHHHHHHHHHHHh--cCCC-CCCcEEEeecC
Q 022216          223 INYTIIRPGGLRNEPPTGNIIMETEDTLY-EGTISRDQVAEVAVEAL--LHPE-SSYKVVEIISR  283 (301)
Q Consensus       223 i~~~~irpg~v~~~~~~~~~~~~~~~~~~-~~~v~~~Dva~~~~~~l--~~~~-~~~~~~~v~~~  283 (301)
                      +++++||||+++++...+.+......... ..+++++|+|++++.++  .++. ..++.+.+.++
T Consensus       147 i~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~~~~i~~~  211 (221)
T 3r6d_A          147 LNYTILRLTWLYNDPEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVGEP  211 (221)
T ss_dssp             SEEEEEEECEEECCTTCCCCEEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGGGTTEEEEEECT
T ss_pred             CCEEEEechhhcCCCCCcceeeccCCccCCCceeeHHHHHHHHHHHHHhcChhhhhcceeeecCC
Confidence            99999999999998444443333222222 33789999999999888  6665 45667777754

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.96  E-value=5.9e-30  Score=222.36  Aligned_cols=219  Identities=18%  Similarity=0.120  Sum_probs=152.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc------cCCCCeEEEEccCCCChHhHHHHhc----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS------KDNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~------~~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+++++++...      ....++.++.+|++| .+++.+++.    
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   82 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG   82 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC-HHHHHHHHHHHHH
Confidence            468999999999999999999999999999999998766554321      123468899999999 777766665    


Q ss_pred             ---CCCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc----CCCEEEEeccccc-ccccCCCC
Q 022216          134 ---DDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR----GVNRFILISSILV-NGAAMGQI  193 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~----~~~~iV~~SS~~~-~~~~~~~~  193 (301)
                         + +|+||||||....            ++|+..+++|+.|++++++++.+.    + ++||++||... +...    
T Consensus        83 ~~g~-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~----  156 (278)
T 1spx_A           83 KFGK-LDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHAT----  156 (278)
T ss_dssp             HHSC-CCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCC----
T ss_pred             HcCC-CCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCC----
Confidence               6 9999999996432            234456899999999999998543    5 89999999875 3211    


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------------ccccccC
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------------EDTLYEG  253 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------------~~~~~~~  253 (301)
                              .....|+.+|.+.+.+.+       ..|+++++|+||++.|++.........             .......
T Consensus       157 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  228 (278)
T 1spx_A          157 --------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGV  228 (278)
T ss_dssp             --------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSS
T ss_pred             --------CCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCCCcC
Confidence                    224678999999987654       368999999999999987533210000             0011234


Q ss_pred             CCCHHHHHHHHHHHhcCCC---CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          254 TISRDQVAEVAVEALLHPE---SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~~~---~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.+++|+|++++.++..+.   ..++++++.++   ...++.|+++.+.+
T Consensus       229 ~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG---~~~~~~~~~~~~~~  275 (278)
T 1spx_A          229 MGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGG---SSLIMGLHCQDFAK  275 (278)
T ss_dssp             CBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT---GGGC----------
T ss_pred             CCCHHHHHHHHHHHcCccccCcccCcEEEECCC---cccccCcccccHHH
Confidence            7899999999977765433   35778888775   88999999998865

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.96  E-value=9.8e-29  Score=209.65  Aligned_cols=202  Identities=20%  Similarity=0.258  Sum_probs=150.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +.+|+||||||+|+||++++++|+++| ++|++++|++++..++.   ..++.++.+|++| .+++.+++.+ +|+||||
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~---~~~~~~~~~Dl~d-~~~~~~~~~~-~D~vv~~   95 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY---PTNSQIIMGDVLN-HAALKQAMQG-QDIVYAN   95 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC---CTTEEEEECCTTC-HHHHHHHHTT-CSEEEEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc---cCCcEEEEecCCC-HHHHHHHhcC-CCEEEEc
Confidence            346899999999999999999999999 89999999987766543   3689999999999 8999999999 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcc-hhhcchhhHHHHHHHHHHHHHHHc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPA-YIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~-~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ||...          ....+.++++++++.++++||++||..+|+.....+.... .....+..    .+..+|+.+++.
T Consensus        96 a~~~~----------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~  161 (236)
T 3qvo_A           96 LTGED----------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLK----PFRRAADAIEAS  161 (236)
T ss_dssp             CCSTT----------HHHHHHHHHHHHHHTTCCEEEEECCCCC----------------CGGGH----HHHHHHHHHHTS
T ss_pred             CCCCc----------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhcccchHH----HHHHHHHHHHHC
Confidence            98531          1245788999999999999999999999876543221111 11112233    344556777789


Q ss_pred             CCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC-CCCcEEEeecCC
Q 022216          222 GINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE-SSYKVVEIISRV  284 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~v~~~~  284 (301)
                      |+++++||||+++++.................+++++|+|++++.++.++. ..+++|++.+++
T Consensus       162 gi~~~~vrPg~i~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~~~~g~~~~i~~~~  225 (236)
T 3qvo_A          162 GLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQPG  225 (236)
T ss_dssp             CSEEEEEEECEEECCSCCCCEEECTTSCCSCSEEEHHHHHHHHHHHHHSTTTTTTEEEEEECSS
T ss_pred             CCCEEEEeCCcccCCCCcceEEeccCCCCCCcEECHHHHHHHHHHHHcCcccccCeeEEecCCC
Confidence            999999999999998655433333222322346899999999999998876 578899999863

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.96  E-value=2.2e-29  Score=226.51  Aligned_cols=226  Identities=13%  Similarity=0.153  Sum_probs=168.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-----CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-C-CCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-----FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-D-SEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~-~d~  138 (301)
                      +|+||||||+||||++++++|+++|     ++|++++|+.....  .  ...+++++.+|++| .+++.+++.+ + +|+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~--~--~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~d~   75 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW--H--EDNPINYVQCDISD-PDDSQAKLSPLTDVTH   75 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC--C--CSSCCEEEECCTTS-HHHHHHHHTTCTTCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc--c--ccCceEEEEeecCC-HHHHHHHHhcCCCCCE
Confidence            4789999999999999999999999     99999999876543  1  23578999999999 8889888876 3 999


Q ss_pred             EEEccCCCCCCCCCCceeeehHHHHHHHHHHHHc--CCCEEE-------EecccccccccC--CCCCCcchhhcchhhHH
Q 022216          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR--GVNRFI-------LISSILVNGAAM--GQILNPAYIFLNVFGLT  207 (301)
Q Consensus       139 Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV-------~~SS~~~~~~~~--~~~~~~~~~~~~~~~~y  207 (301)
                      ||||||... .++...+++|+.++.+++++|++.  +++++|       |+||.++||...  ..+..+..+.......|
T Consensus        76 vih~a~~~~-~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~~~~~y  154 (364)
T 2v6g_A           76 VFYVTWANR-STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFY  154 (364)
T ss_dssp             EEECCCCCC-SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCCSSCCHH
T ss_pred             EEECCCCCc-chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccccCCccchhh
Confidence            999999653 355667899999999999999987  788998       899999998642  22333332221123445


Q ss_pred             HHHHHHHHHHHHHcC-CcEEEEecCcccCCCCCCcee----------e---ccc-------c---ccccCCCCHHHHHHH
Q 022216          208 LIAKLQAEQYIRKSG-INYTIIRPGGLRNEPPTGNII----------M---ETE-------D---TLYEGTISRDQVAEV  263 (301)
Q Consensus       208 ~~sK~~~e~~~~~~~-i~~~~irpg~v~~~~~~~~~~----------~---~~~-------~---~~~~~~v~~~Dva~~  263 (301)
                      ...+..++++.++++ ++++++||++++|+.......          .   ...       .   ..+..+++++|+|++
T Consensus       155 ~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a  234 (364)
T 2v6g_A          155 YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEH  234 (364)
T ss_dssp             HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHH
Confidence            433333333333456 999999999999986542100          0   010       1   111245667999999


Q ss_pred             HHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          264 AVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       264 ~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++.++.++...+++||++++   +.+++.|+++.+++
T Consensus       235 ~~~~~~~~~~~g~~~ni~~~---~~~s~~e~~~~i~~  268 (364)
T 2v6g_A          235 HIWAAVDPYAKNEAFNVSNG---DVFKWKHFWKVLAE  268 (364)
T ss_dssp             HHHHHHCGGGTTEEEEECCS---CCBCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCceEEecCC---CcCCHHHHHHHHHH
Confidence            99999887656889999985   88999999998865

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.96  E-value=1.6e-29  Score=228.27  Aligned_cols=191  Identities=17%  Similarity=0.074  Sum_probs=160.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      |+||||||+|+||++++++|+++|+ +|++++|+                      +| .+++.+++.+ +|+|||+||.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------~d-~~~l~~~~~~-~d~Vih~a~~   56 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------TK-EEELESALLK-ADFIVHLAGV   56 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------CC-HHHHHHHHHH-CSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------CC-HHHHHHHhcc-CCEEEECCcC
Confidence            6899999999999999999999998 88776553                      56 7889999999 9999999998


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH----
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK----  220 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~----  220 (301)
                      ....++...+++|+.++.++++++++.+++ +||++||..+|+                .+.|+.+|.++|+++++    
T Consensus        57 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----------------~~~Y~~sK~~~E~~~~~~~~~  120 (369)
T 3st7_A           57 NRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----------------DNPYGESKLQGEQLLREYAEE  120 (369)
T ss_dssp             BCTTCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----------------CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----------------CCCchHHHHHHHHHHHHHHHH
Confidence            777788889999999999999999999887 999999998875                36789999999998865    


Q ss_pred             cCCcEEEEecCcccCCCCCCce----------------eeccccccccCCCCHHHHHHHHHHHhcCCCCC-CcEEEeecC
Q 022216          221 SGINYTIIRPGGLRNEPPTGNI----------------IMETEDTLYEGTISRDQVAEVAVEALLHPESS-YKVVEIISR  283 (301)
Q Consensus       221 ~~i~~~~irpg~v~~~~~~~~~----------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~-~~~~~v~~~  283 (301)
                      .+++++++||++++|+......                ...........+++++|+|++++.++..+... +++||+.++
T Consensus       121 ~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~i~~~  200 (369)
T 3st7_A          121 YGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNV  200 (369)
T ss_dssp             HCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTCCCEETTEECCSCC
T ss_pred             hCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCCcccCCceEEeCCC
Confidence            7999999999999998654310                01111222345899999999999999887654 789999885


Q ss_pred             CCCCCcCHHHHHHHhhc
Q 022216          284 VDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       284 ~~~~~~s~~e~~~~i~~  300 (301)
                         +.+++.|+++.+++
T Consensus       201 ---~~~s~~e~~~~~~~  214 (369)
T 3st7_A          201 ---FKVTLGEIVDLLYK  214 (369)
T ss_dssp             ---EEEEHHHHHHHHHH
T ss_pred             ---CceeHHHHHHHHHH
Confidence               99999999999875

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.96  E-value=3.3e-29  Score=218.03  Aligned_cols=217  Identities=19%  Similarity=0.186  Sum_probs=161.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDS  136 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~~  136 (301)
                      +++|+||||||+||||++++++|+++|++|++++|+.++.++.......++.++.+|++| .+++.+++.       + +
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~-i   80 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTD-GERIDVVAADVLARYGR-V   80 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC-C
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCC-HHHHHHHHHHHHHhCCC-C
Confidence            458999999999999999999999999999999999888776655456789999999999 777766654       5 9


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+..            ..+.
T Consensus        81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~~  148 (281)
T 3m1a_A           81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS------------FAGF  148 (281)
T ss_dssp             SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC------------CTTC
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCC------------CCCc
Confidence            999999996431        234567899999966666555    5667789999999875432            1235


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-ccc----------------cccccCCCCHHHH
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-ETE----------------DTLYEGTISRDQV  260 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-~~~----------------~~~~~~~v~~~Dv  260 (301)
                      ..|+.+|.+.|.+.+       .+|+++++|+||++.|++....... ...                ......+.+++|+
T Consensus       149 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv  228 (281)
T 3m1a_A          149 SAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKA  228 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-----CBCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhccCCCCCCHHHH
Confidence            789999999987653       2699999999999999875432111 000                0111236799999


Q ss_pred             HHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHh
Q 022216          261 AEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       261 a~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i  298 (301)
                      |++++.++..+. .+..|+++++   ....+.+....+
T Consensus       229 a~a~~~~~~~~~-~~~~~~l~s~---~~~~i~g~~~~i  262 (281)
T 3m1a_A          229 AAAIRLALDTEK-TPLRLALGGD---AVDFLTGHLDSV  262 (281)
T ss_dssp             HHHHHHHHHSSS-CCSEEEESHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-CCeEEecCch---HHHHHHHHHHHH
Confidence            999998888775 4668998885   555555544443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.96  E-value=6.8e-29  Score=216.65  Aligned_cols=205  Identities=19%  Similarity=0.195  Sum_probs=161.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      |+||||||||+||++++++|++. |++|+++.|++++...+.   ..+++++.+|++| .+++.+++++ +|+||||||.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~---~~~v~~~~~D~~d-~~~l~~~~~~-~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW---RGKVSVRQLDYFN-QESMVEAFKG-MDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG---BTTBEEEECCTTC-HHHHHHHTTT-CSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh---hCCCEEEEcCCCC-HHHHHHHHhC-CCEEEEeCCC
Confidence            57999999999999999999998 999999999988766543   3689999999999 8999999999 9999999986


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcE
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINY  225 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~  225 (301)
                      ...      ...|+.++.++++++++.++++||++||..   .....+    +.    .   ...+..+|+.+++.|+++
T Consensus        76 ~~~------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~---~~~~~~----~~----~---~~~~~~~e~~~~~~g~~~  135 (289)
T 3e48_A           76 IHP------SFKRIPEVENLVYAAKQSGVAHIIFIGYYA---DQHNNP----FH----M---SPYFGYASRLLSTSGIDY  135 (289)
T ss_dssp             CCS------HHHHHHHHHHHHHHHHHTTCCEEEEEEESC---CSTTCC----ST----T---HHHHHHHHHHHHHHCCEE
T ss_pred             Ccc------chhhHHHHHHHHHHHHHcCCCEEEEEcccC---CCCCCC----Cc----c---chhHHHHHHHHHHcCCCE
Confidence            432      245899999999999999999999999954   221111    10    1   112235667777899999


Q ss_pred             EEEecCcccCCCCC-------CceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHh
Q 022216          226 TIIRPGGLRNEPPT-------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       226 ~~irpg~v~~~~~~-------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i  298 (301)
                      +++|||+++++...       ......+.......+++++|+|++++.++..+...+++|++. +   +.+++.|+++.+
T Consensus       136 ~ilrp~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~-~---~~~s~~e~~~~~  211 (289)
T 3e48_A          136 TYVRMAMYMDPLKPYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGKRYLLS-G---YSYDMKELAAIL  211 (289)
T ss_dssp             EEEEECEESTTHHHHHHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTTCEEEEC-C---EEEEHHHHHHHH
T ss_pred             EEEeccccccccHHHHHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHHHcCCCcCCceEEeC-C---CcCCHHHHHHHH
Confidence            99999999997421       111111222333458999999999999998887668899999 6   999999999988


Q ss_pred             hc
Q 022216          299 KQ  300 (301)
Q Consensus       299 ~~  300 (301)
                      ++
T Consensus       212 ~~  213 (289)
T 3e48_A          212 SE  213 (289)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.96  E-value=1.6e-29  Score=246.25  Aligned_cols=232  Identities=17%  Similarity=0.184  Sum_probs=173.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh----ccccCCCCeEEEEccCCCChHhHHHHhc--CCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIG--DDS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~  136 (301)
                      .+++|+||||||+|+||++++++|+++|++|++++|+.....+    +......++.++.+|++| .+++.+++.  + +
T Consensus         8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~~-~   85 (699)
T 1z45_A            8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD-RKGLEKVFKEYK-I   85 (699)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC-HHHHHHHHHHSC-C
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCC-HHHHHHHHHhCC-C
Confidence            4568999999999999999999999999999999987653211    110013578899999999 888998888  6 9


Q ss_pred             CEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCC----CCCCcchhhcchhhHHH
Q 022216          137 EAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMG----QILNPAYIFLNVFGLTL  208 (301)
Q Consensus       137 d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~----~~~~~~~~~~~~~~~y~  208 (301)
                      |+||||||....    .+....+++|+.++.++++++++.++++||++||.++|+....    .+..+. .+..+...|+
T Consensus        86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-~~~~p~~~Y~  164 (699)
T 1z45_A           86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-CPLGPTNPYG  164 (699)
T ss_dssp             CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-SCCCCCSHHH
T ss_pred             CEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-CCCCCCChHH
Confidence            999999996542    2334568999999999999999989899999999999975421    122222 2334567899


Q ss_pred             HHHHHHHHHHHH------cCCcEEEEecCcccCCCCCC-----------ce---------------eecc------cccc
Q 022216          209 IAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTG-----------NI---------------IMET------EDTL  250 (301)
Q Consensus       209 ~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~-----------~~---------------~~~~------~~~~  250 (301)
                      .+|.++|++++.      .+++++++||++++|+...+           .+               ...+      ....
T Consensus       165 ~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~  244 (699)
T 1z45_A          165 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTP  244 (699)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSC
T ss_pred             HHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCCe
Confidence            999999988754      58999999999999874210           10               0000      1122


Q ss_pred             ccCCCCHHHHHHHHHHHhcCC------CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          251 YEGTISRDQVAEVAVEALLHP------ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       251 ~~~~v~~~Dva~~~~~~l~~~------~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ...+++++|+|++++.++..+      ...+++||++++   +.+++.|+++.+++
T Consensus       245 ~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~---~~~s~~el~~~i~~  297 (699)
T 1z45_A          245 IRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSG---KGSTVFEVYHAFCK  297 (699)
T ss_dssp             EECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             eEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCC---CCCcHHHHHHHHHH
Confidence            346899999999998888632      223578999985   88999999998865

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.96  E-value=1.4e-29  Score=222.18  Aligned_cols=212  Identities=17%  Similarity=0.208  Sum_probs=166.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhh--hccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAK--TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +|+||||||+|+||++++++|+++| ++|++++|++++..  .+.   ..+++++.+|++| .+++.+++.+ +|+||||
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~---~~~~~~~~~D~~d-~~~l~~~~~~-~d~vi~~   79 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELR---LQGAEVVQGDQDD-QVIMELALNG-AYATFIV   79 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHH---HTTCEEEECCTTC-HHHHHHHHTT-CSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHH---HCCCEEEEecCCC-HHHHHHHHhc-CCEEEEe
Confidence            5799999999999999999999999 99999999876542  121   2578999999999 8999999999 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcC
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG  222 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~  222 (301)
                      ++.....    ..+.|+.++.++++++++.++++||++|+..+|+...+          .+...|+.+|..+|+++++.|
T Consensus        80 a~~~~~~----~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~----------~~~~~y~~sK~~~e~~~~~~g  145 (299)
T 2wm3_A           80 TNYWESC----SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAG----------RLAAAHFDGKGEVEEYFRDIG  145 (299)
T ss_dssp             CCHHHHT----CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTT----------SCCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCccc----cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCC----------cccCchhhHHHHHHHHHHHCC
Confidence            9743211    24568889999999999999999999888777653211          113568899999999999999


Q ss_pred             CcEEEEecCcccCCCCCCce-----------eeccccccccCCCCHHHHHHHHHHHhcCCC-CCCcEEEeecCCCCCCcC
Q 022216          223 INYTIIRPGGLRNEPPTGNI-----------IMETEDTLYEGTISRDQVAEVAVEALLHPE-SSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       223 i~~~~irpg~v~~~~~~~~~-----------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~v~~~~~~~~~s  290 (301)
                      +++++|||++++++......           ...+.......+++++|+|++++.++.++. ..+++|++.+    +.+|
T Consensus       146 i~~~ilrp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~g~~~~~~g----~~~s  221 (299)
T 2wm3_A          146 VPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLST----CRHT  221 (299)
T ss_dssp             CCEEEEECCEEGGGGGTTTCCEECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHHHTTCEEECCS----EEEC
T ss_pred             CCEEEEeecHHhhhchhhcCCcccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhhhCCeEEEeee----ccCC
Confidence            99999999999987432110           001112222357899999999999998752 3578999875    5799


Q ss_pred             HHHHHHHhhc
Q 022216          291 YEDLFGSIKQ  300 (301)
Q Consensus       291 ~~e~~~~i~~  300 (301)
                      +.|+++.+.+
T Consensus       222 ~~e~~~~~~~  231 (299)
T 2wm3_A          222 AEEYAALLTK  231 (299)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.96  E-value=1.6e-29  Score=217.49  Aligned_cols=206  Identities=17%  Similarity=0.202  Sum_probs=154.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      .+++|++|||||+||||++++++|+++|++|++++|+.+..++...+...++.++.+|++| .+++.+.+.       + 
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~-   82 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTR-QDSIDAAIAATVEHAGG-   82 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHSSS-
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC-HHHHHHHHHHHHHHcCC-
Confidence            4578999999999999999999999999999999999877766554445678999999999 777766654       5 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++.+    .+ .++||++||...+...            .
T Consensus        83 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  150 (259)
T 4e6p_A           83 LDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE------------A  150 (259)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC------------T
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC------------C
Confidence            9999999997532        34566788999999999998843    22 4699999998754321            2


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce---------------eeccccccccCCCCHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI---------------IMETEDTLYEGTISRDQV  260 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~---------------~~~~~~~~~~~~v~~~Dv  260 (301)
                      ....|+.+|.+.+.+.+       ..|+++++|+||++.|++.....               ...........+.+++|+
T Consensus       151 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dv  230 (259)
T 4e6p_A          151 LVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDL  230 (259)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHH
Confidence            24779999999987664       35899999999999998643210               000011223457899999


Q ss_pred             HHHHHHHhcCCC---CCCcEEEeecC
Q 022216          261 AEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       261 a~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      |++++.++ ++.   ..++++++.++
T Consensus       231 a~~v~~L~-s~~~~~itG~~i~vdgG  255 (259)
T 4e6p_A          231 TGMAIFLA-SAESDYIVSQTYNVDGG  255 (259)
T ss_dssp             HHHHHHTT-SGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHh-CCccCCCCCCEEEECcC
Confidence            99996554 443   34678888774

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.96  E-value=1.2e-28  Score=211.83  Aligned_cols=208  Identities=16%  Similarity=0.144  Sum_probs=148.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+..++...+...++.++.+|++| .+++.+++.       +
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~   81 (257)
T 3tpc_A            3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTN-EADATAALAFAKQEFGH   81 (257)
T ss_dssp             -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence            34678999999999999999999999999999999999887766554445678999999999 766666554       5


Q ss_pred             CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc----------CCCEEEEecccccccccCCC
Q 022216          135 DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR----------GVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~----------~~~~iV~~SS~~~~~~~~~~  192 (301)
                       +|+||||||....            ++|+..+++|+.|++++++++.+.          +.++||++||...+...   
T Consensus        82 -id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~---  157 (257)
T 3tpc_A           82 -VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ---  157 (257)
T ss_dssp             -CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC---
T ss_pred             -CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC---
Confidence             9999999997532            235567899999999999998542          34689999998755321   


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccc-cCCCCHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLY-EGTISRDQV  260 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~-~~~v~~~Dv  260 (301)
                               .....|+.+|.+.+.+.+       .+|+++++|+||++.|++.......   . ...... ..+.+++|+
T Consensus       158 ---------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~r~~~~~dv  228 (257)
T 3tpc_A          158 ---------IGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAASVPFPPRLGRAEEY  228 (257)
T ss_dssp             ---------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------CCSSSSCSCBCHHHH
T ss_pred             ---------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHHHHHHHHhcCCCCCCCCCHHHH
Confidence                     234778999998886653       3689999999999999875432110   0 011111 357799999


Q ss_pred             HHHHHHHhcCCCCCCcEEEeecC
Q 022216          261 AEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       261 a~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      |++++.++......|+++++.++
T Consensus       229 a~~v~~l~s~~~itG~~i~vdGG  251 (257)
T 3tpc_A          229 AALVKHICENTMLNGEVIRLDGA  251 (257)
T ss_dssp             HHHHHHHHHCTTCCSCEEEESTT
T ss_pred             HHHHHHHcccCCcCCcEEEECCC
Confidence            99998877765567888888774

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.96  E-value=2.9e-30  Score=215.48  Aligned_cols=191  Identities=18%  Similarity=0.145  Sum_probs=155.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +|+||||||+|+||++++++|+++|+  +|++++|++.+       ...+++++.+|++| .+++.+++   +|+|||||
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-------~~~~~~~~~~D~~~-~~~~~~~~---~d~vi~~a   73 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRLDNPVGPLAE-LLPQLDGS---IDTAFCCL   73 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTEECCBSCHHH-HGGGCCSC---CSEEEECC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-------cCCCceEEeccccC-HHHHHHhh---hcEEEECe
Confidence            67999999999999999999999998  99999998765       13578889999998 77777766   89999999


Q ss_pred             CCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          144 GFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       144 g~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      |....  .++...+++|+.++.++++++++.++++||++||..+|+.              +...|+.+|.++|++++..
T Consensus        74 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~--------------~~~~y~~sK~~~e~~~~~~  139 (215)
T 2a35_A           74 GTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK--------------SSIFYNRVKGELEQALQEQ  139 (215)
T ss_dssp             CCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------CSSHHHHHHHHHHHHHTTS
T ss_pred             eeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC--------------CccHHHHHHHHHHHHHHHc
Confidence            96542  4566678999999999999999999899999999987742              1357899999999999989


Q ss_pred             CCc-EEEEecCcccCCCCCCceeec---ccccc---ccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          222 GIN-YTIIRPGGLRNEPPTGNIIME---TEDTL---YEGTISRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       222 ~i~-~~~irpg~v~~~~~~~~~~~~---~~~~~---~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      +++ ++++||++++|+.....+...   .....   ...+++++|+|++++.++.++.  +++|++.++
T Consensus       140 ~~~~~~~vrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~--~~~~~i~~~  206 (215)
T 2a35_A          140 GWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEG--KGVRFVESD  206 (215)
T ss_dssp             CCSEEEEEECCSEESTTSCEEGGGGTTCCCC----CHHHHHHHHHHHHHHHHHHTCCC--SEEEEEEHH
T ss_pred             CCCeEEEEeCceeeCCCCcchHHHHHHHhhhhccCCCcCcEeHHHHHHHHHHHHhcCC--CCceEEcHH
Confidence            999 999999999998654221100   00000   2247899999999999998875  779999984

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.96  E-value=3e-30  Score=220.09  Aligned_cols=205  Identities=17%  Similarity=0.111  Sum_probs=150.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ++++||++|||||+++||++++++|+++|++|++.+|+.+.+++...   ....++..+.+|++| ++++++.+..    
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~   83 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTD-ELAIEAAFSKLDAE   83 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999877655332   245688999999999 7666555432    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH-----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~-----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        ++|++|||||+...        ++|+..+++|+.|++++++++.     +.+.++||++||...+..   .+      
T Consensus        84 ~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~---~~------  154 (255)
T 4g81_D           84 GIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAA---RP------  154 (255)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSB---CT------
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCC---CC------
Confidence              49999999997543        3577789999999999998872     234579999999874321   11      


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~  266 (301)
                         ....|..+|.+...+.+       .+||++|.|.||++.|++........      ....+...+..++|+|++++ 
T Consensus       155 ---~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~-  230 (255)
T 4g81_D          155 ---TVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPEELIGTAI-  230 (255)
T ss_dssp             ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCSCBCGGGGHHHHH-
T ss_pred             ---CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCCCcCHHHHHHHHH-
Confidence               23567778877765443       47999999999999998643221100      01112234668999999984 


Q ss_pred             HhcCCCCCCcEEEe
Q 022216          267 ALLHPESSYKVVEI  280 (301)
Q Consensus       267 ~l~~~~~~~~~~~v  280 (301)
                      +|.++.+.+.+.+.
T Consensus       231 fL~S~~a~~iTG~~  244 (255)
T 4g81_D          231 FLSSKASDYINGQI  244 (255)
T ss_dssp             HHHSGGGTTCCSCE
T ss_pred             HHhCchhCCCcCCE
Confidence            66666655444333

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.96  E-value=1.6e-29  Score=213.79  Aligned_cols=209  Identities=20%  Similarity=0.178  Sum_probs=151.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~V  139 (301)
                      ++++||++|||||+++||++++++|+++|++|++.+|+..+ ..+...+...++..+.+|++| ++++.+.+.. ++|++
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~g~iDiL   83 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFAD-PLAAKDSFTDAGFDIL   83 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS-TTTTTTSSTTTCCCEE
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHhCCCCEE
Confidence            68899999999999999999999999999999999998642 222233356789999999999 6777766654 69999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcC-CCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      |||||+...        ++|+..+++|+.|++++++++    ++.+ .++||++||...+.   +.+.         ...
T Consensus        84 VNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~---g~~~---------~~~  151 (247)
T 4hp8_A           84 VNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ---GGIR---------VPS  151 (247)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS---CCSS---------CHH
T ss_pred             EECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC---CCCC---------ChH
Confidence            999997542        357788999999999999986    3333 47999999987432   2221         345


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      |..+|.....+.+       .+||++|.|.||++.|++........      ....+...+-.++|+|.++ .+|.++.+
T Consensus       152 Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v-~fLaSd~a  230 (247)
T 4hp8_A          152 YTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGRWGHSEDIAGAA-VFLSSAAA  230 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSSCBCTHHHHHHH-HHHTSGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCCCcCHHHHHHHH-HHHhCchh
Confidence            6777777665443       47999999999999998643221100      0111223356899999998 56777776


Q ss_pred             CCcEEEeecCC
Q 022216          274 SYKVVEIISRV  284 (301)
Q Consensus       274 ~~~~~~v~~~~  284 (301)
                      .+.+......|
T Consensus       231 ~~iTG~~i~VD  241 (247)
T 4hp8_A          231 DYVHGAILNVD  241 (247)
T ss_dssp             TTCCSCEEEES
T ss_pred             cCCcCCeEEEC
Confidence            55544444333

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.96  E-value=1.6e-28  Score=208.40  Aligned_cols=203  Identities=14%  Similarity=0.063  Sum_probs=148.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-------hcCCCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGDDSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~~~d~  138 (301)
                      +|+||||||+++||++++++|+++|++|++.+|+.+.+++... ...++.++++|++| ++++.+.       +++ +|+
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~g~-iDi   78 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK-ERPNLFYFHGDVAD-PLTLKKFVEYAMEKLQR-IDV   78 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT-TCTTEEEEECCTTS-HHHHHHHHHHHHHHHSC-CCE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hcCCEEEEEecCCC-HHHHHHHHHHHHHHcCC-CCE
Confidence            4899999999999999999999999999999999877776554 45688999999999 6555544       445 999


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      +|||||....        ++|+..+++|+.|++++++++.+.   +.++||++||...+.   +.+.         ...|
T Consensus        79 LVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~---~~~~---------~~~Y  146 (247)
T 3ged_A           79 LVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ---SEPD---------SEAY  146 (247)
T ss_dssp             EEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS---CCTT---------CHHH
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc---CCCC---------CHHH
Confidence            9999997542        357778999999999999887321   337999999987432   2221         3556


Q ss_pred             HHHHHHHHHHHH------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEee
Q 022216          208 LIAKLQAEQYIR------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEII  281 (301)
Q Consensus       208 ~~sK~~~e~~~~------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~  281 (301)
                      ..+|.+...+.+      ..+|++|.|.||++.+++............+...+..++|+|++++.++.+.-..|+++.|.
T Consensus       147 ~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~s~~~iTG~~i~VD  226 (247)
T 3ged_A          147 ASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFTQEDCAAIPAGKVGTPKDISNMVLFLCQQDFITGETIIVD  226 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CCHHHHHTSTTSSCBCHHHHHHHHHHHHHCSSCCSCEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhCCCCCCCeEEEC
Confidence            777777664432      14899999999999998754432211112222346689999999976665443456666665


Q ss_pred             cC
Q 022216          282 SR  283 (301)
Q Consensus       282 ~~  283 (301)
                      ++
T Consensus       227 GG  228 (247)
T 3ged_A          227 GG  228 (247)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.96  E-value=1.4e-28  Score=211.80  Aligned_cols=204  Identities=15%  Similarity=0.188  Sum_probs=156.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +++++|+||||||+||||++++++|+++|++|++++|+.+...      ..++.++.+|++| .+++.+++.       +
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~   96 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA------DPDIHTVAGDISK-PETADRIVREGIERFGR   96 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS------STTEEEEESCTTS-HHHHHHHHHHHHHHHSC
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc------cCceEEEEccCCC-HHHHHHHHHHHHHHCCC
Confidence            4567899999999999999999999999999999999876532      2478999999999 776666554       5


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||+...        ++|+..+++|+.|++++++++    ++.+.++||++||...+....          ..
T Consensus        97 -iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------~~  165 (260)
T 3un1_A           97 -IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMV----------GM  165 (260)
T ss_dssp             -CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBT----------TC
T ss_pred             -CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCC----------CC
Confidence             9999999997542        245667889999999999987    456678999999987543221          12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-cccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-TEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      +...|+.+|.+.+.+.+       ..|+++++|+||++.|++........ ........+.+++|+|++++.+...+...
T Consensus       166 ~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~p~~r~~~~~dva~av~~L~~~~~it  245 (260)
T 3un1_A          166 PSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAETHSTLAGLHPVGRMGEIRDVVDAVLYLEHAGFIT  245 (260)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGGGHHHHHTTSTTSSCBCHHHHHHHHHHHHHCTTCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHHHHHHHhccCCCCCCcCHHHHHHHHHHhcccCCCC
Confidence            24678899999987654       24899999999999999765432111 11122335779999999998775555567


Q ss_pred             CcEEEeecC
Q 022216          275 YKVVEIISR  283 (301)
Q Consensus       275 ~~~~~v~~~  283 (301)
                      |+++++.++
T Consensus       246 G~~i~vdGG  254 (260)
T 3un1_A          246 GEILHVDGG  254 (260)
T ss_dssp             SCEEEESTT
T ss_pred             CcEEEECCC
Confidence            888988774

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.96  E-value=1.7e-28  Score=212.52  Aligned_cols=208  Identities=16%  Similarity=0.099  Sum_probs=157.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+++++.......++.++.+|++| .+++.+++.       +
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~   85 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTN-EVSVRALIDFTIDTFGR   85 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence            35678999999999999999999999999999999999887766554345688999999999 766666654       5


Q ss_pred             CCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       +|+||||||....          ++|+..+++|+.|++++++++    ++.+.++||++||...+...           
T Consensus        86 -id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-----------  153 (271)
T 3tzq_B           86 -LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAY-----------  153 (271)
T ss_dssp             -CCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBC-----------
T ss_pred             -CCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCC-----------
Confidence             9999999997521          234567899999999999998    55667899999998755321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       .....|..+|.+.+.+.+       .+|+++++|+||++.|++........     ........+.+++|+|++++.++
T Consensus       154 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~  232 (271)
T 3tzq_B          154 -DMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEPHEIAELVCFLA  232 (271)
T ss_dssp             -SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTSTTSSCBCHHHHHHHHHHHH
T ss_pred             -CCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence             234678999999987654       36899999999999998765322100     01112234678999999997666


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      ....  ..|+++++.++
T Consensus       233 s~~~~~itG~~i~vdGG  249 (271)
T 3tzq_B          233 SDRAAFITGQVIAADSG  249 (271)
T ss_dssp             SGGGTTCCSCEEEESTT
T ss_pred             CcccCCcCCCEEEECCC
Confidence            4332  35778888765

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.96  E-value=3.3e-28  Score=212.82  Aligned_cols=221  Identities=14%  Similarity=0.093  Sum_probs=164.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~V  139 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.++.++.......++.++.+|++| .+++.+++..  ++|+|
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQD-LSSVRRFADGVSGADVL   90 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTC-HHHHHHHHHTCCCEEEE
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC-HHHHHHHHHhcCCCCEE
Confidence            45679999999999999999999999999999999999888776655455689999999999 8888888774  48999


Q ss_pred             EEccCCCC------CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCC-CCCcchhhcchhhHHHHHHH
Q 022216          140 VCATGFQP------GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ-ILNPAYIFLNVFGLTLIAKL  212 (301)
Q Consensus       140 i~~Ag~~~------~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~-~~~~~~~~~~~~~~y~~sK~  212 (301)
                      |||||+..      .++++.++++|+.|++++++++.+...+|||++||...+...... .......+..+...|+.+|.
T Consensus        91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~  170 (291)
T 3rd5_A           91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKL  170 (291)
T ss_dssp             EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHHHH
T ss_pred             EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchHHHHHH
Confidence            99999743      356778899999999999999988766799999999876433211 11111123456788999999


Q ss_pred             HHHHHHH-------HcC--CcEEEEecCcccCCCCCCceeec--c-ccccccC-CCCHHHHHHHHHHHhcCCCCCCcEEE
Q 022216          213 QAEQYIR-------KSG--INYTIIRPGGLRNEPPTGNIIME--T-EDTLYEG-TISRDQVAEVAVEALLHPESSYKVVE  279 (301)
Q Consensus       213 ~~e~~~~-------~~~--i~~~~irpg~v~~~~~~~~~~~~--~-~~~~~~~-~v~~~Dva~~~~~~l~~~~~~~~~~~  279 (301)
                      +.+.+.+       ..|  ++++.|+||.+.|++........  . ....... ..+++|+|+.++.++..+...|+.+.
T Consensus       171 a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~l~~~~~~~G~~~~  250 (291)
T 3rd5_A          171 ANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAATRVVATDADFGARQTLYAASQDLPGDSFVG  250 (291)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC--------------------CHHHHHHHHHHHHHHHSCCCTTCEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCceeC
Confidence            9986653       245  99999999999998754421100  0 0011111 23589999999888887766777887


Q ss_pred             eecC
Q 022216          280 IISR  283 (301)
Q Consensus       280 v~~~  283 (301)
                      +.++
T Consensus       251 vdgG  254 (291)
T 3rd5_A          251 PRFG  254 (291)
T ss_dssp             ETTS
T ss_pred             Cccc
Confidence            7653

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.96  E-value=4.8e-29  Score=234.66  Aligned_cols=214  Identities=16%  Similarity=0.058  Sum_probs=162.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +|+||||||+|+||+++++.|+++|++|++++|+..+..           .+.+|+.+.   +.+.+.+ +|+||||||.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~-----------~v~~d~~~~---~~~~l~~-~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG-----------KRFWDPLNP---ASDLLDG-ADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT-----------CEECCTTSC---CTTTTTT-CSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc-----------ceeecccch---hHHhcCC-CCEEEECCCC
Confidence            789999999999999999999999999999999876532           256787762   4556677 9999999996


Q ss_pred             CCC-----CCCCCceeeehHHHHHHHHH-HHHcCCCEEEEeccccccc-ccCCCCCCcchhhcchhhHHHHHHHHHHHHH
Q 022216          146 QPG-----WDLFAPWKVDNFGTVNLVEA-CRKRGVNRFILISSILVNG-AAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (301)
Q Consensus       146 ~~~-----~~~~~~~~~N~~g~~~l~~a-~~~~~~~~iV~~SS~~~~~-~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (301)
                      ...     .++..++++|+.++.+++++ +++.++++||++||.++|+ .....+..+....  +.+.|+.+|...|++.
T Consensus       212 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~--~~~~y~~~~~~~E~~~  289 (516)
T 3oh8_A          212 PIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESES--GDDFLAEVCRDWEHAT  289 (516)
T ss_dssp             -----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCC--CSSHHHHHHHHHHHTT
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCC--CcChHHHHHHHHHHHH
Confidence            532     22344678999999999999 5666789999999999998 4333333333322  4567888888888544


Q ss_pred             ---HHcCCcEEEEecCcccCCCCCC-----------ceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCC
Q 022216          219 ---RKSGINYTIIRPGGLRNEPPTG-----------NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRV  284 (301)
Q Consensus       219 ---~~~~i~~~~irpg~v~~~~~~~-----------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~  284 (301)
                         +..|++++++||++++|+...-           ............++++++|+|++++.++.++. ..++||++++ 
T Consensus       290 ~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~-~~g~~ni~~~-  367 (516)
T 3oh8_A          290 APASDAGKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQ-ISGPINAVAP-  367 (516)
T ss_dssp             HHHHHTTCEEEEEEECEEEBTTBSHHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHHHHHCTT-CCEEEEESCS-
T ss_pred             HHHHhCCCCEEEEEeeEEECCCCChHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHHHHhCcc-cCCcEEEECC-
Confidence               4579999999999999985210           01111222333468999999999999998776 3558999996 


Q ss_pred             CCCCcCHHHHHHHhhc
Q 022216          285 DAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       285 ~~~~~s~~e~~~~i~~  300 (301)
                        +.+++.|+++.+++
T Consensus       368 --~~~s~~el~~~i~~  381 (516)
T 3oh8_A          368 --NPVSNADMTKILAT  381 (516)
T ss_dssp             --CCEEHHHHHHHTTC
T ss_pred             --CCCCHHHHHHHHHH
Confidence              89999999999875

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.96  E-value=1.9e-29  Score=217.01  Aligned_cols=205  Identities=17%  Similarity=0.145  Sum_probs=149.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-------hcCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~~  135 (301)
                      ++++|++|||||++|||++++++|+++|++|++.+|+.+.+++...+.+.++..+++|++| .+++++.       +++ 
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~-  103 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSAN-LAELDRLYEKVKAEAGR-  103 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCC-HHHHHHHHHHHHHHcCC-
Confidence            4789999999999999999999999999999999999988877665556788999999999 6555544       445 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +|++|||||....        ++|+..+++|+.|++++++++.+.  ..++||++||...+.   +.         ....
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~---~~---------~~~~  171 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST---GT---------PAFS  171 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS---CC---------TTCH
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc---CC---------CCch
Confidence            9999999997542        357778999999999999998543  226899999986432   11         1245


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-----------ccccccCCCCHHHHHHHHHHH
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-----------EDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-----------~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      .|..+|.+...+.+       .+||++|.|.||++.|++.........           ...+...+..++|+|+++ .+
T Consensus       172 ~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v-~F  250 (273)
T 4fgs_A          172 VYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAA-LF  250 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSSCBCHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHH-HH
Confidence            68888888876553       478999999999999987543321110           011123356899999998 56


Q ss_pred             hcCCCCCCcEEEeec
Q 022216          268 LLHPESSYKVVEIIS  282 (301)
Q Consensus       268 l~~~~~~~~~~~v~~  282 (301)
                      |.++.+.+.+.....
T Consensus       251 LaSd~a~~iTG~~i~  265 (273)
T 4fgs_A          251 LASDDSSFVTGAELF  265 (273)
T ss_dssp             HHSGGGTTCCSCEEE
T ss_pred             HhCchhcCccCCeEe
Confidence            667665554444333

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.96  E-value=7.9e-29  Score=212.07  Aligned_cols=206  Identities=16%  Similarity=0.163  Sum_probs=146.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc--cccCCCCeEEEEccCCCChHhHHHH-------h
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT--LSKDNPSLQIVKADVTEGSAKLSEA-------I  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~~-------~  132 (301)
                      +++++|++|||||+++||++++++|+++|++|++.+|+.+..+..  ..+...++.++.+|++| ++++.+.       +
T Consensus         3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQD-DAQCRDAVAQTIATF   81 (258)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC-HHHHHHHHHHHHHHh
Confidence            578899999999999999999999999999999999987654321  11245688999999999 6555444       4


Q ss_pred             cCCCCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          133 GDDSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +. +|++|||||+...       ++|+..+++|+.+++++++++.+   .+.++||++||...+..   .         .
T Consensus        82 G~-iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~---~---------~  148 (258)
T 4gkb_A           82 GR-LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTG---Q---------G  148 (258)
T ss_dssp             SC-CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHC---C---------S
T ss_pred             CC-CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccC---C---------C
Confidence            45 9999999997532       34667789999999999998732   22379999999874321   1         1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc---------ccccc--cCCCCHHHHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET---------EDTLY--EGTISRDQVAEVA  264 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~---------~~~~~--~~~v~~~Dva~~~  264 (301)
                      ....|..+|.+.+.+.+       .+||++|.|.||++.|++.........         ....+  ..+..++|+|+++
T Consensus       149 ~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg~R~g~peeiA~~v  228 (258)
T 4gkb_A          149 NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLGRRFTTPDEIADTA  228 (258)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTTTSCBCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCCCCCcCHHHHHHHH
Confidence            23567778887765543       479999999999999997654321110         01111  2466899999998


Q ss_pred             HHHhcCCCCCC---cEEEeec
Q 022216          265 VEALLHPESSY---KVVEIIS  282 (301)
Q Consensus       265 ~~~l~~~~~~~---~~~~v~~  282 (301)
                       .+|.++.+.+   +++.|.+
T Consensus       229 -~fLaS~~a~~iTG~~i~VDG  248 (258)
T 4gkb_A          229 -VFLLSPRASHTTGEWLFVDG  248 (258)
T ss_dssp             -HHHHSGGGTTCCSCEEEEST
T ss_pred             -HHHhCchhcCccCCeEEECC
Confidence             5666666554   4444444

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.6e-28  Score=213.07  Aligned_cols=211  Identities=13%  Similarity=0.049  Sum_probs=156.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      |+|||||||||||++++++|+++||+|+++.|++...                ++.. .+...+.+.+ +|+|||+|+..
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~----------------~~~~-~~~~~~~l~~-~d~vihla~~~   62 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG----------------RITW-DELAASGLPS-CDAAVNLAGEN   62 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT----------------EEEH-HHHHHHCCCS-CSEEEECCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC----------------eeec-chhhHhhccC-CCEEEEeccCc
Confidence            6899999999999999999999999999999976531                1111 2333455677 99999999843


Q ss_pred             CCC---CC-----CCceeeehHHHHHHHHHHHHcCC--CEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHH
Q 022216          147 PGW---DL-----FAPWKVDNFGTVNLVEACRKRGV--NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQ  216 (301)
Q Consensus       147 ~~~---~~-----~~~~~~N~~g~~~l~~a~~~~~~--~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~  216 (301)
                      ...   .|     ...++.|+.++.++++++++.+.  .++|+.||.++|+.....+..++. +..+...|...+...|.
T Consensus        63 i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~-p~~~~~~~~~~~~~~e~  141 (298)
T 4b4o_A           63 ILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDS-PGGDFDFFSNLVTKWEA  141 (298)
T ss_dssp             SSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTC-CCSCSSHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccC-CccccchhHHHHHHHHH
Confidence            211   11     23567899999999999988764  458999999999987766655543 33444556666666654


Q ss_pred             HH--HHcCCcEEEEecCcccCCCCCC-----------ceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          217 YI--RKSGINYTIIRPGGLRNEPPTG-----------NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       217 ~~--~~~~i~~~~irpg~v~~~~~~~-----------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      ..  ...+++++++||+.++|+....           .....+....+.+|+|++|+|++++.+++++.. .++||++++
T Consensus       142 ~~~~~~~~~~~~~~r~~~v~g~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~-~g~yn~~~~  220 (298)
T 4b4o_A          142 AARLPGDSTRQVVVRSGVVLGRGGGAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHV-HGVLNGVAP  220 (298)
T ss_dssp             HHCCSSSSSEEEEEEECEEECTTSHHHHHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHHHHHHHCTTC-CEEEEESCS
T ss_pred             HHHhhccCCceeeeeeeeEEcCCCCchhHHHHHHhcCCcceecccCceeecCcHHHHHHHHHHHHhCCCC-CCeEEEECC
Confidence            33  3578999999999999985311           111123344455799999999999999988764 459999996


Q ss_pred             CCCCCcCHHHHHHHhhc
Q 022216          284 VDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       284 ~~~~~~s~~e~~~~i~~  300 (301)
                         +++|++|+++.|++
T Consensus       221 ---~~~t~~e~~~~ia~  234 (298)
T 4b4o_A          221 ---SSATNAEFAQTFGA  234 (298)
T ss_dssp             ---CCCBHHHHHHHHHH
T ss_pred             ---CccCHHHHHHHHHH
Confidence               99999999998875

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.96  E-value=5e-29  Score=214.06  Aligned_cols=213  Identities=16%  Similarity=0.148  Sum_probs=157.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+.+.     
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~   86 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD-EQHREAVIKAALDQ   86 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999998876554332   245689999999999 766665554     


Q ss_pred             --CCCCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          134 --DDSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        + +|+||||||....       ++|+..+++|+.|++++++++    ++.+.++||++||...+...           
T Consensus        87 ~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  154 (256)
T 3gaf_A           87 FGK-ITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTN-----------  154 (256)
T ss_dssp             HSC-CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCC-----------
T ss_pred             cCC-CCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCC-----------
Confidence              5 9999999997543       235567899999999999997    34556799999998754321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----eccccccccCCCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----METEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       .....|+.+|.+.+.+.+       ..|++++.|+||++.|++......     ..........+.+++|+|++++.++
T Consensus       155 -~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~L~  233 (256)
T 3gaf_A          155 -VRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLC  233 (256)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence             224778999999987654       358999999999999985322110     0011122234679999999997666


Q ss_pred             cCCC--CCCcEEEeecCCCCCCcCH
Q 022216          269 LHPE--SSYKVVEIISRVDAPKRSY  291 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~~~~~~~s~  291 (301)
                      ....  ..|+++++.++   ...++
T Consensus       234 s~~~~~itG~~i~vdgG---~~~~~  255 (256)
T 3gaf_A          234 SPAAAWISGQVLTVSGG---GVQEL  255 (256)
T ss_dssp             SGGGTTCCSCEEEESTT---SCCC-
T ss_pred             CCcccCccCCEEEECCC---ccccC
Confidence            4322  35778888764   55543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.96  E-value=6.3e-28  Score=206.34  Aligned_cols=207  Identities=14%  Similarity=0.160  Sum_probs=147.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhccccCCCCeEEEEccCCCChHhHHHHh-------cC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GD  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~  134 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|++ ++.++.......++.++.+|++| .+++.+++       ++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence            35689999999999999999999999999999999988 55544332234678999999999 77666654       45


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...            .
T Consensus        83 -id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  149 (249)
T 2ew8_A           83 -CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI------------E  149 (249)
T ss_dssp             -CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC------------S
T ss_pred             -CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC------------C
Confidence             9999999997532        235567899999999988885    45566899999998765321            2


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-e--cccc---ccccCCCCHHHHHHHHHHHhc
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-M--ETED---TLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-~--~~~~---~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ....|..+|.+.+.+.+       ..|+++++|+||++.|++...... .  ....   .....+.+++|+|++++.++.
T Consensus       150 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~s  229 (249)
T 2ew8_A          150 AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAFLAS  229 (249)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------CTTSSSCSCCCTHHHHHHHHHHTS
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccchhhHHHHhhCccCCCCCHHHHHHHHHHHcC
Confidence            24678999999987654       258999999999999987541111 0  0000   122346799999999976664


Q ss_pred             CC--CCCCcEEEeecC
Q 022216          270 HP--ESSYKVVEIISR  283 (301)
Q Consensus       270 ~~--~~~~~~~~v~~~  283 (301)
                      .+  ...++++++.++
T Consensus       230 ~~~~~~tG~~~~vdGG  245 (249)
T 2ew8_A          230 DDASFITGQTLAVDGG  245 (249)
T ss_dssp             GGGTTCCSCEEEESSS
T ss_pred             cccCCCCCcEEEECCC
Confidence            32  235677777664

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.96  E-value=3.9e-28  Score=208.99  Aligned_cols=206  Identities=18%  Similarity=0.124  Sum_probs=152.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.++.++........+.++.+|++| .+++.+++.       + 
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~-   81 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGG-   81 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCC-HHHHHHHHHHHHHHcCC-
Confidence            3568999999999999999999999999999999998876655433233458899999999 777776665       6 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...            ..
T Consensus        82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~  149 (260)
T 1nff_A           82 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------------VA  149 (260)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------TT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC------------CC
Confidence            9999999996532        234567899999998777776    44566899999999765321            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC--CC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE--SS  274 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~  274 (301)
                      ...|+.+|.+.+.+.+       ..|+++++|+||+++|++.... ...........+.+++|+|++++.++..+.  ..
T Consensus       150 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~~  228 (260)
T 1nff_A          150 CHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV-PEDIFQTALGRAAEPVEVSNLVVYLASDESSYST  228 (260)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS-CTTCSCCSSSSCBCHHHHHHHHHHHHSGGGTTCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccccc-hhhHHhCccCCCCCHHHHHHHHHHHhCccccCCc
Confidence            4678999999987654       2699999999999999864300 000001122346789999999977775432  34


Q ss_pred             CcEEEeecC
Q 022216          275 YKVVEIISR  283 (301)
Q Consensus       275 ~~~~~v~~~  283 (301)
                      ++++++.++
T Consensus       229 G~~~~v~gG  237 (260)
T 1nff_A          229 GAEFVVDGG  237 (260)
T ss_dssp             SCEEEESTT
T ss_pred             CCEEEECCC
Confidence            778888774

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.96  E-value=2.9e-28  Score=214.82  Aligned_cols=216  Identities=17%  Similarity=0.213  Sum_probs=161.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-----hhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      +|+||||||||+||++++++|+++|++|+++.|+...     .+.+......+++++.+|++| .+++.+++++ +|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~l~~~~~~-~d~vi   81 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD-HQRLVDALKQ-VDVVI   81 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSC-HHHHHHHHTT-CSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCC-HHHHHHHHhC-CCEEE
Confidence            5789999999999999999999999999999998542     111110013578999999999 8999999999 99999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR  219 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~  219 (301)
                      |+++....       +.|+.++.+++++|++.+ +++||+ |   +||.....+..+   .......| .+|..+|++++
T Consensus        82 ~~a~~~~~-------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~~~~---~~p~~~~y-~sK~~~e~~~~  146 (313)
T 1qyd_A           82 SALAGGVL-------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIMEHA---LQPGSITF-IDKRKVRRAIE  146 (313)
T ss_dssp             ECCCCSSS-------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSCCCC---CSSTTHHH-HHHHHHHHHHH
T ss_pred             ECCccccc-------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCccccccC---CCCCcchH-HHHHHHHHHHH
Confidence            99986532       237888999999999998 999985 3   344322211000   01113567 99999999999


Q ss_pred             HcCCcEEEEecCcccCCCCC-------------CceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCC
Q 022216          220 KSGINYTIIRPGGLRNEPPT-------------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDA  286 (301)
Q Consensus       220 ~~~i~~~~irpg~v~~~~~~-------------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~  286 (301)
                      +.+++++++||+.++++...             +.+...........+++++|+|++++.++.++...++++++.++  +
T Consensus       147 ~~g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~--~  224 (313)
T 1qyd_A          147 AASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPP--M  224 (313)
T ss_dssp             HTTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCG--G
T ss_pred             hcCCCeEEEEeceeccccccccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCcccCCceEEEeCC--C
Confidence            99999999999988763211             11111122223346899999999999999887656778887753  2


Q ss_pred             CCcCHHHHHHHhhc
Q 022216          287 PKRSYEDLFGSIKQ  300 (301)
Q Consensus       287 ~~~s~~e~~~~i~~  300 (301)
                      +.+|+.|+++.+++
T Consensus       225 ~~~s~~e~~~~~~~  238 (313)
T 1qyd_A          225 NILSQKEVIQIWER  238 (313)
T ss_dssp             GEEEHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHH
Confidence            68999999998875

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.96  E-value=2.8e-29  Score=214.75  Aligned_cols=212  Identities=13%  Similarity=0.097  Sum_probs=156.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc----CCCCEEEEc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG----DDSEAVVCA  142 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~~d~Vi~~  142 (301)
                      |+||||||+||||++++++|+++|++|++++|++++.+.          .+.+|++| .+++.+++.    + +|+||||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~D~~~-~~~~~~~~~~~~~~-~d~vi~~   69 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA----------DLSTPGGR-ETAVAAVLDRCGGV-LDGLVCC   69 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------CTTSHHHH-HHHHHHHHHHHTTC-CSEEEEC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc----------cccCCccc-HHHHHHHHHHcCCC-ccEEEEC
Confidence            689999999999999999999999999999998765431          15789998 777877775    6 9999999


Q ss_pred             cCCCC-CCCCCCceeeehHHHHHHHHHHHHc----CCCEEEEecccccccccCCCCC--------Ccchh------hcch
Q 022216          143 TGFQP-GWDLFAPWKVDNFGTVNLVEACRKR----GVNRFILISSILVNGAAMGQIL--------NPAYI------FLNV  203 (301)
Q Consensus       143 Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~----~~~~iV~~SS~~~~~~~~~~~~--------~~~~~------~~~~  203 (301)
                      ||... ..++...+++|+.++.++++++.+.    +.++||++||..+|+.....+.        .+...      ...+
T Consensus        70 Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
T 2dkn_A           70 AGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQT  149 (255)
T ss_dssp             CCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHHHCCH
T ss_pred             CCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccccCCc
Confidence            99766 5667788999999999999988553    5689999999998864321110        00000      0135


Q ss_pred             hhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCceeeccc-----c--ccccCCCCHHHHHHHHHHHhc
Q 022216          204 FGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNIIMETE-----D--TLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~~~~~-----~--~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ...|+.+|.+.|.+.+.       .|+++++||||+++|++..........     .  .....+++++|+|++++.++.
T Consensus       150 ~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~  229 (255)
T 2dkn_A          150 HLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPRYGESTRRFVAPLGRGSEPREVAEAIAFLLG  229 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHCTTTHHHHHSCCCTTSSCBCHHHHHHHHHHHHS
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence            67899999999977642       589999999999999753221000000     0  023358999999999988887


Q ss_pred             CC--CCCCcEEEeecCCCCCCcCHHH
Q 022216          270 HP--ESSYKVVEIISRVDAPKRSYED  293 (301)
Q Consensus       270 ~~--~~~~~~~~v~~~~~~~~~s~~e  293 (301)
                      .+  ...+++|++.++   ..++++|
T Consensus       230 ~~~~~~~G~~~~v~gg---~~~~~~e  252 (255)
T 2dkn_A          230 PQASFIHGSVLFVDGG---MDALMRA  252 (255)
T ss_dssp             GGGTTCCSCEEEESTT---HHHHHCT
T ss_pred             CCcccceeeEEEecCC---eEeeeec
Confidence            65  345788999875   5555443

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.96  E-value=3.1e-28  Score=210.50  Aligned_cols=207  Identities=18%  Similarity=0.199  Sum_probs=162.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+||||||+|+||++++++|++ |++|++++|++...        .+   +.+|++| .+++.+++.+ ++|+||||||.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~--------~~---~~~Dl~~-~~~~~~~~~~~~~d~vi~~a~~   67 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ--------GG---YKLDLTD-FPRLEDFIIKKRPDVIINAAAM   67 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT--------TC---EECCTTS-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC--------CC---ceeccCC-HHHHHHHHHhcCCCEEEECCcc
Confidence            5799999999999999999995 89999999987421        12   8899999 8888888864 59999999997


Q ss_pred             CCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       146 ~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ...    .++...+++|+.++.++++++++.+. +||++||.++|+...+ +..+.. +..+.+.|+.+|.++|++++. 
T Consensus        68 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~-~~~e~~-~~~~~~~Y~~sK~~~e~~~~~-  143 (273)
T 2ggs_A           68 TDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKG-NYKEED-IPNPINYYGLSKLLGETFALQ-  143 (273)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSC-SBCTTS-CCCCSSHHHHHHHHHHHHHCC-
T ss_pred             cChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCC-CcCCCC-CCCCCCHHHHHHHHHHHHHhC-
Confidence            542    35667889999999999999998886 9999999999976543 222322 234567899999999999876 


Q ss_pred             CCcEEEEecCcccCCCCC----------Cc-eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcC
Q 022216          222 GINYTIIRPGGLRNEPPT----------GN-IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~----------~~-~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s  290 (301)
                       +++++|||+.++|+...          +. +....  . ...+++++|+|++++.++..+.  .++||+.+    +.++
T Consensus       144 -~~~~~iR~~~v~G~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~dva~~i~~~~~~~~--~g~~~i~~----~~~s  213 (273)
T 2ggs_A          144 -DDSLIIRTSGIFRNKGFPIYVYKTLKEGKTVFAFK--G-YYSPISARKLASAILELLELRK--TGIIHVAG----ERIS  213 (273)
T ss_dssp             -TTCEEEEECCCBSSSSHHHHHHHHHHTTCCEEEES--C-EECCCBHHHHHHHHHHHHHHTC--CEEEECCC----CCEE
T ss_pred             -CCeEEEeccccccccHHHHHHHHHHHcCCCEEeec--C-CCCceEHHHHHHHHHHHHhcCc--CCeEEECC----Cccc
Confidence             88999999999973210          00 01111  1 4468999999999999887664  44888875    7899


Q ss_pred             HHHHHHHhhc
Q 022216          291 YEDLFGSIKQ  300 (301)
Q Consensus       291 ~~e~~~~i~~  300 (301)
                      +.|+++.+.+
T Consensus       214 ~~e~~~~~~~  223 (273)
T 2ggs_A          214 RFELALKIKE  223 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998865

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.96  E-value=2.1e-29  Score=219.28  Aligned_cols=213  Identities=19%  Similarity=0.206  Sum_probs=154.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CC---CCeEEEEccCCCChHhHHHHhcC-
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DN---PSLQIVKADVTEGSAKLSEAIGD-  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~---~~~~~~~~Dl~~~~~~~~~~~~~-  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.++.++...+   ..   .++.++.+|++| .+++.+++.. 
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~   85 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN-EDETARAVDAV   85 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS-HHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC-HHHHHHHHHHH
Confidence            456799999999999999999999999999999999988765543221   12   278999999999 7666655532 


Q ss_pred             -----CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCc
Q 022216          135 -----DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 -----~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                           ++|+||||||....         ++|+..+++|+.|++++++++.+    .+.++||++||...+...       
T Consensus        86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------  158 (281)
T 3svt_A           86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH-------  158 (281)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC-------
T ss_pred             HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC-------
Confidence                 39999999996221         23566789999999999998743    345699999999765322       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee------ccccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM------ETEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~------~~~~~~~~~~v~~~Dva~~  263 (301)
                           .....|+.+|.+.+.+.+       ..|+++++|+||++.|++.......      .........+.+++|+|++
T Consensus       159 -----~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~  233 (281)
T 3svt_A          159 -----RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANM  233 (281)
T ss_dssp             -----TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSSSSCBCHHHHHHH
T ss_pred             -----CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence                 224678999999987664       3579999999999999864321100      0011122346789999999


Q ss_pred             HHHHhcCCC--CCCcEEEeecCCCCCCcC
Q 022216          264 AVEALLHPE--SSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       264 ~~~~l~~~~--~~~~~~~v~~~~~~~~~s  290 (301)
                      ++.++..+.  ..++++++.++   ...+
T Consensus       234 ~~~l~s~~~~~itG~~~~vdgG---~~~~  259 (281)
T 3svt_A          234 AMFLLSDAASFVTGQVINVDGG---QMLR  259 (281)
T ss_dssp             HHHHHSGGGTTCCSCEEEESTT---GGGS
T ss_pred             HHHHhCcccCCCCCCEEEeCCC---hhcc
Confidence            976665432  35788888764   5444

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.96  E-value=7.9e-29  Score=213.61  Aligned_cols=208  Identities=15%  Similarity=0.135  Sum_probs=154.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---C-CCCeEEEEccCCCChHhHHHHhc----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D-NPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~-~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.++.++....   . ..++.++.+|++| .+++.+++.    
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   81 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT-PEGVDAVVESVRS   81 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999987665543221   1 4578999999999 776666654    


Q ss_pred             ---CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcch
Q 022216          134 ---DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         + +|+||||||....        ++|+..+++|+.+++++++++.    +.+.++||++||...+...         
T Consensus        82 ~~g~-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------  151 (263)
T 3ai3_A           82 SFGG-ADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL---------  151 (263)
T ss_dssp             HHSS-CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred             HcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC---------
Confidence               5 9999999996532        2345678999999999998874    4466899999999866422         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---------ec-----c-cc-ccccCCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---------ME-----T-ED-TLYEGTI  255 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---------~~-----~-~~-~~~~~~v  255 (301)
                         .....|..+|.+.+.+.+       .+|+++++|+||+++|++......         ..     . .. .....+.
T Consensus       152 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  228 (263)
T 3ai3_A          152 ---WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFA  228 (263)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCTTCSCB
T ss_pred             ---CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCCCCCCCc
Confidence               124678899999886653       368999999999999985322100         00     0 00 1223578


Q ss_pred             CHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          256 SRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++|+|++++.++..+.  ..++++++.++
T Consensus       229 ~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG  258 (263)
T 3ai3_A          229 SPEELANFFVFLCSERATYSVGSAYFVDGG  258 (263)
T ss_dssp             CHHHHHHHHHHHTSTTCTTCCSCEEEESTT
T ss_pred             CHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence            99999999977665432  34778888774

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.96  E-value=1.1e-28  Score=211.35  Aligned_cols=213  Identities=16%  Similarity=0.173  Sum_probs=158.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++++|+||||||+|+||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+++.     
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   85 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISK   85 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999998766543321   134578899999999 777777664     


Q ss_pred             --CCCCEEEEccCCCCCC-------CCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          134 --DDSEAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~~-------~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        + +|+||||||.....       +++..+++|+.++.++++++.    +.+.++||++||...+...           
T Consensus        86 ~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------  153 (255)
T 1fmc_A           86 LGK-VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN-----------  153 (255)
T ss_dssp             HSS-CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-----------
T ss_pred             cCC-CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC-----------
Confidence              6 99999999965431       234567899999999999884    4566899999998765421           


Q ss_pred             cchhhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCceee----c-cccccccCCCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNIIM----E-TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~~----~-~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       .+...|+.+|.+.|.+.+.       .++++++|+||.++|++.......    . ........+.+++|+|++++.++
T Consensus       154 -~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  232 (255)
T 1fmc_A          154 -INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLC  232 (255)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHHHHH
T ss_pred             -CCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCCcccCCCHHHHHHHHHHHh
Confidence             2346799999999876642       489999999999998753221100    0 00112234789999999998777


Q ss_pred             cCCC--CCCcEEEeecCCCCCCcCH
Q 022216          269 LHPE--SSYKVVEIISRVDAPKRSY  291 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~~~~~~~s~  291 (301)
                      ..+.  ..+++|++.++   ...++
T Consensus       233 ~~~~~~~~G~~~~v~gg---~~~s~  254 (255)
T 1fmc_A          233 SPAASWVSGQILTVSGG---GVQEL  254 (255)
T ss_dssp             SGGGTTCCSCEEEESTT---SCCCC
T ss_pred             CCccccCCCcEEEECCc---eeccC
Confidence            5432  35788999875   55553

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.95  E-value=3.8e-28  Score=208.69  Aligned_cols=207  Identities=14%  Similarity=0.102  Sum_probs=151.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++.      
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN-TDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999999999999876655332   234688999999999 766665554      


Q ss_pred             -CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH-----HHcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 -DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC-----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~-----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                       + +|+||||||....        ++|+..+++|+.|++++++++     ++.+.++||++||...+...          
T Consensus        82 g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  150 (257)
T 3imf_A           82 GR-IDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG----------  150 (257)
T ss_dssp             SC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC----------
T ss_pred             CC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC----------
Confidence             5 9999999996432        245667899999999999998     33346799999998754321          


Q ss_pred             hcchhhHHHHHHHHHHHHHH--------HcCCcEEEEecCcccCCCCCCceeecc-------ccccccCCCCHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~--------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~~~~~~v~~~Dva~~~  264 (301)
                        .....|..+|.+.+.+.+        ..|++++.|+||.+.+++.........       .......+.+++|+|+++
T Consensus       151 --~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v  228 (257)
T 3imf_A          151 --PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLA  228 (257)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCSCBCHHHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence              224678888888775542        459999999999999986543221111       011223467999999999


Q ss_pred             HHHhcCCC--CCCcEEEeecC
Q 022216          265 VEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +.++..+.  ..|+++++.++
T Consensus       229 ~~L~s~~~~~itG~~i~vdGG  249 (257)
T 3imf_A          229 YYLCSDEAAYINGTCMTMDGG  249 (257)
T ss_dssp             HHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHcCchhcCccCCEEEECCC
Confidence            76664332  35777777764

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.95  E-value=6.1e-28  Score=207.71  Aligned_cols=207  Identities=14%  Similarity=0.073  Sum_probs=149.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.++..+...  ..++.++.+|++| .+++.+++..      +
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~   99 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR--QAGAVALYGDFSC-ETGIMAFIDLLKTQTSS   99 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH--HHTCEEEECCTTS-HHHHHHHHHHHHHHCSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH--hcCCeEEECCCCC-HHHHHHHHHHHHHhcCC
Confidence            56789999999999999999999999999999999999877544332  1348899999999 7666665532      3


Q ss_pred             CCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          136 SEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +|+||||||....       ++|+..+++|+.|++++++++.    +.+.++||++||...+...            ...
T Consensus       100 iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------~~~  167 (260)
T 3gem_A          100 LRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGS------------SKH  167 (260)
T ss_dssp             CSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCC------------SSC
T ss_pred             CCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC------------CCc
Confidence            9999999996542       2344678999999999999884    3456899999998755321            234


Q ss_pred             hHHHHHHHHHHHHHH----H--cCCcEEEEecCcccCCCCCCceeec--cccccccCCCCHHHHHHHHHHHhcCCCCCCc
Q 022216          205 GLTLIAKLQAEQYIR----K--SGINYTIIRPGGLRNEPPTGNIIME--TEDTLYEGTISRDQVAEVAVEALLHPESSYK  276 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~----~--~~i~~~~irpg~v~~~~~~~~~~~~--~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~  276 (301)
                      ..|+.+|.+.+.+.+    +  .+++++.|+||.+.+++........  ........+.+++|+|++++.++..+...|+
T Consensus       168 ~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~~~~~~~~~~~p~~r~~~~edva~~v~~L~~~~~itG~  247 (260)
T 3gem_A          168 IAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDAAYRANALAKSALGIEPGAEVIYQSLRYLLDSTYVTGT  247 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC---------------CCSCCCCCTHHHHHHHHHHHHCSSCCSC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhCCCCCCC
Confidence            678999999887654    2  3699999999999988643221111  1111223356899999999888866666788


Q ss_pred             EEEeecC
Q 022216          277 VVEIISR  283 (301)
Q Consensus       277 ~~~v~~~  283 (301)
                      ++++.++
T Consensus       248 ~i~vdGG  254 (260)
T 3gem_A          248 TLTVNGG  254 (260)
T ss_dssp             EEEESTT
T ss_pred             EEEECCC
Confidence            8888775

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.95  E-value=1.2e-28  Score=214.07  Aligned_cols=208  Identities=15%  Similarity=0.125  Sum_probs=155.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+.+++...+...++.++.+|++| .+++.+++.       +
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~  101 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSS-AKDAESMVEKTTAKWGR  101 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence            45679999999999999999999999999999999999877766554445688999999999 766666554       5


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||+...        ++|+..+++|+.|++++++++.    +.+.++||++||...+...            .
T Consensus       102 -iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  168 (277)
T 4dqx_A          102 -VDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAI------------A  168 (277)
T ss_dssp             -CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCC------------T
T ss_pred             -CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCC------------C
Confidence             9999999996532        2355677899999999999884    3445799999998755321            2


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------e---ccccccccCCCCHHHHHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------M---ETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~---~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      ....|+.+|.+.+.+.+       ..|++++.|+||.+.|++......       .   .........+.+++|+|++++
T Consensus       169 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~  248 (277)
T 4dqx_A          169 DRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAML  248 (277)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTSTTCSCBCHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCcccCCcCHHHHHHHHH
Confidence            34679999999987653       358999999999999875211100       0   011122234679999999997


Q ss_pred             HHhcCCC--CCCcEEEeecC
Q 022216          266 EALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~~  283 (301)
                      .++....  ..|+++++.++
T Consensus       249 ~L~s~~~~~itG~~i~vdGG  268 (277)
T 4dqx_A          249 FLASDRSRFATGSILTVDGG  268 (277)
T ss_dssp             HHHSGGGTTCCSCEEEESSS
T ss_pred             HHhCCccCCCcCCEEEECCc
Confidence            6664332  35778888764

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.95  E-value=1.3e-28  Score=210.50  Aligned_cols=208  Identities=13%  Similarity=0.089  Sum_probs=155.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+..++..........++.+|++| .+++.+++.       +
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~   83 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTN-PESIEAVLKAITDEFGG   83 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCC-HHHHHHHHHHHHHHcCC
Confidence            45679999999999999999999999999999999999877665443334567899999999 766666554       5


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||+...        ++|+..+++|+.|++++++++.    +.+.++||++||...+..            ..
T Consensus        84 -iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~  150 (248)
T 3op4_A           84 -VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMG------------NA  150 (248)
T ss_dssp             -CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------------CT
T ss_pred             -CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCC------------CC
Confidence             9999999997542        2456678999999999999974    345679999999875421            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ....|+.+|.+.+.+.+       ..|++++.|+||.+.+++.......    .........+.+++|+|++++.++...
T Consensus       151 ~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~  230 (248)
T 3op4_A          151 GQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPE  230 (248)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGG
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCc
Confidence            35778999998886553       3689999999999999875432110    001112234679999999996555432


Q ss_pred             C--CCCcEEEeecC
Q 022216          272 E--SSYKVVEIISR  283 (301)
Q Consensus       272 ~--~~~~~~~v~~~  283 (301)
                      .  ..|+++++.++
T Consensus       231 ~~~itG~~i~vdgG  244 (248)
T 3op4_A          231 AAYITGETLHVNGG  244 (248)
T ss_dssp             GTTCCSCEEEESTT
T ss_pred             cCCccCcEEEECCC
Confidence            2  34777777664

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.95  E-value=4.6e-28  Score=208.73  Aligned_cols=208  Identities=16%  Similarity=0.094  Sum_probs=156.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +++++|+||||||+|+||++++++|+++|++|++++|+.++.++...+...++.++.+|++| .+++.+++.       +
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~   86 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-EKDVQTALALAKGKFGR   86 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCC
Confidence            35678999999999999999999999999999999999877665443334678999999999 777776665       6


Q ss_pred             CCCEEEEccCCCCC--------------CCCCCceeeehHHHHHHHHHHHHc----------CCCEEEEecccccccccC
Q 022216          135 DSEAVVCATGFQPG--------------WDLFAPWKVDNFGTVNLVEACRKR----------GVNRFILISSILVNGAAM  190 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------------~~~~~~~~~N~~g~~~l~~a~~~~----------~~~~iV~~SS~~~~~~~~  190 (301)
                       +|+||||||....              +++...+++|+.+++++++++.+.          +.++||++||...+... 
T Consensus        87 -id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-  164 (265)
T 2o23_A           87 -VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQ-  164 (265)
T ss_dssp             -CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC-
T ss_pred             -CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCC-
Confidence             9999999996532              124457789999999999998654          56799999998765321 


Q ss_pred             CCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--c--cccccc-cCCCCHH
Q 022216          191 GQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--E--TEDTLY-EGTISRD  258 (301)
Q Consensus       191 ~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--~--~~~~~~-~~~v~~~  258 (301)
                                 .....|..+|.+.+.+.+       ..|+++++|+||++.+++.......  .  ...... ..+.+++
T Consensus       165 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (265)
T 2o23_A          165 -----------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPA  233 (265)
T ss_dssp             -----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCSSSCSCBCHH
T ss_pred             -----------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCHHHHHHHHHcCCCcCCCCCHH
Confidence                       224678999998876553       3589999999999999864421100  0  000111 3467999


Q ss_pred             HHHHHHHHHhcCCCCCCcEEEeecC
Q 022216          259 QVAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       259 Dva~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      |+|++++.++.++...++++.+.++
T Consensus       234 dva~~~~~l~~~~~~~G~~i~vdgG  258 (265)
T 2o23_A          234 EYAHLVQAIIENPFLNGEVIRLDGA  258 (265)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             HHHHHHHHHhhcCccCceEEEECCC
Confidence            9999999888766667888888764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.95  E-value=6.1e-28  Score=210.03  Aligned_cols=207  Identities=16%  Similarity=0.171  Sum_probs=152.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc------------hhhhc---cccCCCCeEEEEccCCCChHh
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD------------KAKTT---LSKDNPSLQIVKADVTEGSAK  127 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~------------~~~~~---~~~~~~~~~~~~~Dl~~~~~~  127 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+..            .+++.   ......++.++.+|++| .++
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~   85 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD-RAA   85 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHH
Confidence            467899999999999999999999999999999999732            12211   11245689999999999 766


Q ss_pred             HHHHhc-------CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccc
Q 022216          128 LSEAIG-------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGA  188 (301)
Q Consensus       128 ~~~~~~-------~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~  188 (301)
                      +.+.+.       + +|+||||||+...        ++|+..+++|+.|++++++++    ++.+.++||++||...+..
T Consensus        86 v~~~~~~~~~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~  164 (281)
T 3s55_A           86 LESFVAEAEDTLGG-IDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSA  164 (281)
T ss_dssp             HHHHHHHHHHHHTC-CCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC
T ss_pred             HHHHHHHHHHhcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCC
Confidence            666554       5 9999999997542        235567899999999999996    3455679999999875532


Q ss_pred             cCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----e----ec-------
Q 022216          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----I----ME-------  245 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~----~~-------  245 (301)
                      .            .....|..+|.+.+.+.+       .+|+++++|+||++.|++.....     .    ..       
T Consensus       165 ~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (281)
T 3s55_A          165 N------------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVES  232 (281)
T ss_dssp             C------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHH
T ss_pred             C------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHH
Confidence            1            224678999999886653       36899999999999999765321     0    00       


Q ss_pred             ---cccccccCCCCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          246 ---TEDTLYEGTISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       246 ---~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                         ........+.+++|+|++++.++..+.  ..|+++++.++
T Consensus       233 ~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG  275 (281)
T 3s55_A          233 VFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAG  275 (281)
T ss_dssp             HHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence               001112457899999999976665432  34777888764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.95  E-value=2.4e-28  Score=211.29  Aligned_cols=208  Identities=18%  Similarity=0.150  Sum_probs=154.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhcc---ccCCCCeEEEEccCCCChHhHHHHhc----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+. +..++..   .....++.++.+|++| .+++.+++.    
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~  102 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ-ESEVEALFAAVIE  102 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence            456799999999999999999999999999999998854 3333221   2245688999999999 766665554    


Q ss_pred             ---CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          134 ---DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         . +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...         
T Consensus       103 ~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------  172 (269)
T 4dmm_A          103 RWGR-LDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGN---------  172 (269)
T ss_dssp             HHSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCC---------
T ss_pred             HcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC---------
Confidence               5 9999999997542        345667899999999999987    34566899999998754221         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-cccccccCCCCHHHHHHHHHHHhcC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                         .....|+.+|.+.+.+.+       ..|+++++|+||++.|++........ ........+.+++|+|++++.++.+
T Consensus       173 ---~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~  249 (269)
T 4dmm_A          173 ---PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELAAEKLLEVIPLGRYGEAAEVAGVVRFLAAD  249 (269)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHHHHHHGGGCTTSSCBCHHHHHHHHHHHHHC
T ss_pred             ---CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccccccHHHHHhcCCCCCCCCHHHHHHHHHHHhCC
Confidence               224678999998886553       36899999999999998765432111 1112223467999999999777766


Q ss_pred             CC---CCCcEEEeecC
Q 022216          271 PE---SSYKVVEIISR  283 (301)
Q Consensus       271 ~~---~~~~~~~v~~~  283 (301)
                      +.   ..|+++++.++
T Consensus       250 ~~~~~itG~~i~vdGG  265 (269)
T 4dmm_A          250 PAAAYITGQVINIDGG  265 (269)
T ss_dssp             GGGGGCCSCEEEESTT
T ss_pred             cccCCCcCCEEEECCC
Confidence            44   34778888664

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.95  E-value=6.1e-28  Score=208.42  Aligned_cols=210  Identities=19%  Similarity=0.227  Sum_probs=154.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      .+.+|++|||||+||||++++++|+++|++|++++|+.+++++..   ..++.++.+|++| .+++.+++.       + 
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~-   87 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN---LPNTLCAQVDVTD-KYTFDTAITRAEKIYGP-   87 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC---CTTEEEEECCTTC-HHHHHHHHHHHHHHHCS-
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh---cCCceEEEecCCC-HHHHHHHHHHHHHHCCC-
Confidence            356899999999999999999999999999999999987776553   2478999999999 766666554       5 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...            ..
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~------------~~  155 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTF------------PD  155 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------TT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCC------------CC
Confidence            9999999997532        234567899999999988876    45567899999998755321            22


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc------cccccCCCCHHHHHHHHHHHhcC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE------DTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~------~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ...|+.+|.+.+.+.+       ..|++++.|+||++.|++..........      ......+.+++|+|++++.++.+
T Consensus       156 ~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~av~~l~~~  235 (266)
T 3p19_A          156 HAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQ  235 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHS
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhcccccCCCCHHHHHHHHHHHHcC
Confidence            4678899999886553       3689999999999999865432110000      01223578999999999888877


Q ss_pred             CCCCCcEEEeecCCCCCCcC
Q 022216          271 PESSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~s  290 (301)
                      +. ...+.++.-....++..
T Consensus       236 ~~-~~~~~~i~i~p~~~~~~  254 (266)
T 3p19_A          236 PQ-NVCIREIALAPTKQQPK  254 (266)
T ss_dssp             CT-TEEEEEEEEEETTCCC-
T ss_pred             CC-CccceeeEEecCCCCCc
Confidence            65 44455555432234433

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.95  E-value=8.1e-28  Score=209.49  Aligned_cols=209  Identities=16%  Similarity=0.143  Sum_probs=151.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+.+++...   ....++.++.+|++| .+++.+++.     
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  102 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD-ELQMRNAVRDLVLK  102 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999876654332   245678999999999 766665554     


Q ss_pred             --CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          134 --DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        + +|+||||||+...         ++|+..+++|+.|++++++++    ++.+.++||++||...+...         
T Consensus       103 ~g~-iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~---------  172 (283)
T 3v8b_A          103 FGH-LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF---------  172 (283)
T ss_dssp             HSC-CCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC---------
T ss_pred             hCC-CCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC---------
Confidence              5 9999999997432         235567899999999999998    55566899999998644211         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----------cccccc--cCCCCHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----------TEDTLY--EGTISRD  258 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----------~~~~~~--~~~v~~~  258 (301)
                       +......|+.+|.+.+.+.+       ..||+++.|+||++.|++........           ......  ..+.+++
T Consensus       173 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~pe  251 (283)
T 3v8b_A          173 -TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSE  251 (283)
T ss_dssp             -CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGTTCCBCHH
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCccccCCCCCHH
Confidence             11235779999999987664       25899999999999998754321100           001111  3456899


Q ss_pred             HHHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          259 QVAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       259 Dva~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      |+|++++.++ ++.   ..|+++++.++
T Consensus       252 dvA~~v~fL~-s~~a~~itG~~i~vdGG  278 (283)
T 3v8b_A          252 DVAELIRFLV-SERARHVTGSPVWIDGG  278 (283)
T ss_dssp             HHHHHHHHHT-SGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHc-CccccCCcCCEEEECcC
Confidence            9999996555 443   34667777653

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.95  E-value=8.2e-28  Score=206.24  Aligned_cols=206  Identities=13%  Similarity=0.082  Sum_probs=152.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDS  136 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~~  136 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+.++.++...+...++.++.+|++| .+++.+++.       + +
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~-i   80 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGS-V   80 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSC-C
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHHcCC-C
Confidence            568999999999999999999999999999999999876665443334568899999999 777766654       5 9


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...            ...
T Consensus        81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~  148 (254)
T 1hdc_A           81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL------------ALT  148 (254)
T ss_dssp             CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------TTC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC------------CCc
Confidence            999999996532        235567899999998666654    55566899999998765321            224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc---eeecc-ccccccCCC-CHHHHHHHHHHHhcCCC
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN---IIMET-EDTLYEGTI-SRDQVAEVAVEALLHPE  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~---~~~~~-~~~~~~~~v-~~~Dva~~~~~~l~~~~  272 (301)
                      ..|+.+|.+.+.+.+       ..|+++++|+||++.|++....   ..... .......+. +++|+|++++.++..+.
T Consensus       149 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~dvA~~v~~l~s~~~  228 (254)
T 1hdc_A          149 SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTS  228 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccccccchhHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchh
Confidence            678999999887653       3589999999999999753210   00000 011122466 99999999987775432


Q ss_pred             --CCCcEEEeecC
Q 022216          273 --SSYKVVEIISR  283 (301)
Q Consensus       273 --~~~~~~~v~~~  283 (301)
                        ..++++++.++
T Consensus       229 ~~~tG~~~~vdgG  241 (254)
T 1hdc_A          229 SYVTGAELAVDGG  241 (254)
T ss_dssp             TTCCSCEEEESTT
T ss_pred             cCCCCCEEEECCC
Confidence              35777887764

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.95  E-value=5.8e-28  Score=210.19  Aligned_cols=208  Identities=18%  Similarity=0.133  Sum_probs=149.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhccc----cCCCCeEEEEccCCCChHhHHHHhc---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIG---  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~---  133 (301)
                      .++.+|++|||||+||||++++++|+++|++|++++|+. +..++...    ....++.++.+|++| .+++.+++.   
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~   99 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK-PSEIADMMAMVA   99 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC-HHHHHHHHHHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC-HHHHHHHHHHHH
Confidence            356789999999999999999999999999999999843 33332221    125688999999999 766666554   


Q ss_pred             ----CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcc
Q 022216          134 ----DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       134 ----~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                          + +|+||||||+...        ++|+..+++|+.|++++++++    ++.+.++||++||...+...        
T Consensus       100 ~~~g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------  170 (281)
T 3v2h_A          100 DRFGG-ADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS--------  170 (281)
T ss_dssp             HHTSS-CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred             HHCCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCC--------
Confidence                5 9999999997542        245567899999999999997    45566799999998754321        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----------------ccccccccCC
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----------------ETEDTLYEGT  254 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----------------~~~~~~~~~~  254 (301)
                          .....|+.+|.+.+.+.+       ..|++++.|+||++.|++.......                .........+
T Consensus       171 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~  246 (281)
T 3v2h_A          171 ----PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKF  246 (281)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------CCTTCSC
T ss_pred             ----CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCCCCc
Confidence                224678999999887653       3589999999999999865432110                0111222357


Q ss_pred             CCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          255 ISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       255 v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      .+++|+|++++.++..+.  ..|+++++.++
T Consensus       247 ~~~edvA~~v~~L~s~~a~~itG~~i~vdGG  277 (281)
T 3v2h_A          247 ITVEQVASLALYLAGDDAAQITGTHVSMDGG  277 (281)
T ss_dssp             BCHHHHHHHHHHHHSSGGGGCCSCEEEESTT
T ss_pred             cCHHHHHHHHHHHcCCCcCCCCCcEEEECCC
Confidence            899999999976664432  35778887664

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.95  E-value=2e-27  Score=208.86  Aligned_cols=211  Identities=19%  Similarity=0.258  Sum_probs=158.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-------chhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-------DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      +|+||||||||+||++++++|+++|++|++++|+.       ++.+.+......+++++.+|++| .+++.+++++ +|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~l~~~~~~-~d~   79 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND-HETLVKAIKQ-VDI   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHTT-CSE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC-HHHHHHHHhC-CCE
Confidence            57899999999999999999999999999999987       22221110012578999999999 8999999999 999


Q ss_pred             EEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       139 Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      |||||+...           +.++.++++++++.+ +++||+ |   +||.....    ..........| .+|..+|++
T Consensus        80 vi~~a~~~~-----------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~----~~~~~p~~~~y-~sK~~~e~~  139 (307)
T 2gas_A           80 VICAAGRLL-----------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDVDR----HDAVEPVRQVF-EEKASIRRV  139 (307)
T ss_dssp             EEECSSSSC-----------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCTTS----CCCCTTHHHHH-HHHHHHHHH
T ss_pred             EEECCcccc-----------cccHHHHHHHHHhcCCceEEee-c---ccccCccc----ccCCCcchhHH-HHHHHHHHH
Confidence            999998542           677899999999998 999984 3   34432111    01111124567 999999999


Q ss_pred             HHHcCCcEEEEecCcccCCCCCC------------ceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCC
Q 022216          218 IRKSGINYTIIRPGGLRNEPPTG------------NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVD  285 (301)
Q Consensus       218 ~~~~~i~~~~irpg~v~~~~~~~------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~  285 (301)
                      +++.+++++++|||.++++....            .+...........+++++|+|++++.++..+...++++++.+.  
T Consensus       140 ~~~~~i~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~~~--  217 (307)
T 2gas_A          140 IEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLP--  217 (307)
T ss_dssp             HHHHTCCBEEEECCEETTTTGGGTTCTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGGTTEEEECCCG--
T ss_pred             HHHcCCCeEEEEcceeeccccccccccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccccCceEEEeCC--
Confidence            99999999999999988753211            1111222223346889999999999999877656777887652  


Q ss_pred             CCCcCHHHHHHHhhc
Q 022216          286 APKRSYEDLFGSIKQ  300 (301)
Q Consensus       286 ~~~~s~~e~~~~i~~  300 (301)
                      ++.+|++|+++.+++
T Consensus       218 ~~~~s~~e~~~~~~~  232 (307)
T 2gas_A          218 KNYLTQNEVIALWEK  232 (307)
T ss_dssp             GGEEEHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHH
Confidence            268999999998875

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.95  E-value=5.2e-28  Score=206.70  Aligned_cols=209  Identities=15%  Similarity=0.119  Sum_probs=153.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~V  139 (301)
                      ..+++|+||||||+||||++++++|+++|++|++++|+.+++++.......++.++.+|++| .+++.+.+..  ++|+|
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~id~l   88 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLAN-KEECSNLISKTSNLDIL   88 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHTCSCCSEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCC-HHHHHHHHHhcCCCCEE
Confidence            45678999999999999999999999999999999999877766554344688999999999 8888887764  49999


Q ss_pred             EEccCCCC--------CCCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          140 VCATGFQP--------GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       140 i~~Ag~~~--------~~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |||||...        .++++..+++|+.|++++++++.    +.+.++||++||...+...            .....|
T Consensus        89 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~~Y  156 (249)
T 3f9i_A           89 VCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN------------PGQANY  156 (249)
T ss_dssp             EECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CC------------SCSHHH
T ss_pred             EECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCC------------CCCchh
Confidence            99999643        24566788999999999988873    3456799999998755322            224679


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec----cccccccCCCCHHHHHHHHHHHhcCCC--CC
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME----TEDTLYEGTISRDQVAEVAVEALLHPE--SS  274 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~----~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~  274 (301)
                      +.+|.+.+.+.+       ..|+++++|+||.+.+++........    ........+.+++|+|++++.++..+.  ..
T Consensus       157 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~t  236 (249)
T 3f9i_A          157 CASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQKIPLGTYGIPEDVAYAVAFLASNNASYIT  236 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHHHHHHHHHCTTCSCBCHHHHHHHHHHHHSGGGTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCcc
Confidence            999998886653       36899999999999998654321100    011122357889999999977765433  35


Q ss_pred             CcEEEeecC
Q 022216          275 YKVVEIISR  283 (301)
Q Consensus       275 ~~~~~v~~~  283 (301)
                      |+++++.++
T Consensus       237 G~~~~vdgG  245 (249)
T 3f9i_A          237 GQTLHVNGG  245 (249)
T ss_dssp             SCEEEESTT
T ss_pred             CcEEEECCC
Confidence            788888774

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.95  E-value=6.3e-28  Score=207.28  Aligned_cols=205  Identities=15%  Similarity=0.073  Sum_probs=151.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc------CC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DD  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------~~  135 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.++..+.   ...++.++.+|++| .+++.+++.      . 
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~D~~~-~~~v~~~~~~~~~~g~-   79 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVAD---LGDRARFAAADVTD-EAAVASALDLAETMGT-   79 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHHH---TCTTEEEEECCTTC-HHHHHHHHHHHHHHSC-
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHHh---cCCceEEEECCCCC-HHHHHHHHHHHHHhCC-
Confidence            567799999999999999999999999999999999976554433   34689999999999 777666654      6 


Q ss_pred             CCEEEEccCCCC------------CCCCCCceeeehHHHHHHHHHHHH------------cCCCEEEEecccccccccCC
Q 022216          136 SEAVVCATGFQP------------GWDLFAPWKVDNFGTVNLVEACRK------------RGVNRFILISSILVNGAAMG  191 (301)
Q Consensus       136 ~d~Vi~~Ag~~~------------~~~~~~~~~~N~~g~~~l~~a~~~------------~~~~~iV~~SS~~~~~~~~~  191 (301)
                      +|+||||||...            .++|+..+++|+.|++++++++..            .+.++||++||...+..   
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---  156 (257)
T 3tl3_A           80 LRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDG---  156 (257)
T ss_dssp             EEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CC---
T ss_pred             CCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCC---
Confidence            999999999632            234677889999999999999854            23468999999875421   


Q ss_pred             CCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHH
Q 022216          192 QILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQ  259 (301)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~D  259 (301)
                               ......|..+|.+.+.+.+       ..||+++.|+||++.|++.......     .........+.+++|
T Consensus       157 ---------~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~~~p~d  227 (257)
T 3tl3_A          157 ---------QIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPHPSRLGNPDE  227 (257)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CHHHHHHHHHTSSSSCSCBCHHH
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccHHHHHHHHhcCCCCCCccCHHH
Confidence                     2245789999999886653       3689999999999999875432110     001111135779999


Q ss_pred             HHHHHHHHhcCCCCCCcEEEeecC
Q 022216          260 VAEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       260 va~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      +|++++.++.++...|+++++.++
T Consensus       228 va~~v~~l~s~~~itG~~i~vdGG  251 (257)
T 3tl3_A          228 YGALAVHIIENPMLNGEVIRLDGA  251 (257)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEESTT
T ss_pred             HHHHHHHHhcCCCCCCCEEEECCC
Confidence            999998888776677888888774

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.95  E-value=2.7e-28  Score=210.17  Aligned_cols=209  Identities=19%  Similarity=0.221  Sum_probs=152.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhc----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.++.++...+    ...++.++.+|++| .+++.+++.    
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   84 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD-RAQCDALAGRAVE   84 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC-HHHHHHHHHHHHH
Confidence            356799999999999999999999999999999999998766543321    22578999999999 766665554    


Q ss_pred             ---CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcch
Q 022216          134 ---DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         + +|+||||||....        ++|+..+++|+.|++++++++.+    .+.++||++||...+.  .+       
T Consensus        85 ~~g~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--~~-------  154 (262)
T 3pk0_A           85 EFGG-IDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI--TG-------  154 (262)
T ss_dssp             HHSC-CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT--BC-------
T ss_pred             HhCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc--CC-------
Confidence               5 9999999997542        23455789999999999998854    3668999999986321  11       


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce---ee-ccccccccCCCCHHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI---IM-ETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~---~~-~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                        ......|+.+|.+.+.+.+       ..|+++++|+||++.|++.....   .. .........+.+++|+|++++.+
T Consensus       155 --~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L  232 (262)
T 3pk0_A          155 --YPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIPAGALGTPEDIGHLAAFL  232 (262)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred             --CCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence              1235779999999987654       26999999999999997532211   00 00111223467999999999665


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..|+++++.++
T Consensus       233 ~s~~~~~itG~~i~vdGG  250 (262)
T 3pk0_A          233 ATKEAGYITGQAIAVDGG  250 (262)
T ss_dssp             HSGGGTTCCSCEEEESTT
T ss_pred             hCccccCCcCCEEEECCC
Confidence            54332  45677777664

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.95  E-value=8e-28  Score=207.27  Aligned_cols=208  Identities=15%  Similarity=0.133  Sum_probs=154.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.++.++.......++.++.+|++| .+++.+++.       +
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~g~   86 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTK-RASVDAAMQKAIDALGG   86 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTC-HHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC-HHHHHHHHHHHHHHcCC
Confidence            34678999999999999999999999999999999998876665443333478899999999 777776665       6


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       +|+||||||....        ++|+..+++|+.|++++++++.+    .+ .++||++||...+...            
T Consensus        87 -iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  153 (263)
T 3ak4_A           87 -FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA------------  153 (263)
T ss_dssp             -CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC------------
T ss_pred             -CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC------------
Confidence             9999999996532        23556789999999999998843    34 5899999998754321            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----e---------e-ccccccccCCCCHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----I---------M-ETEDTLYEGTISRDQ  259 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~---------~-~~~~~~~~~~v~~~D  259 (301)
                      .....|+.+|.+.+.+.+       ..|+++++|+||++.|++.....     .         . .........+.+++|
T Consensus       154 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d  233 (263)
T 3ak4_A          154 PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPED  233 (263)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTCTTCSCBCHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcCCCCCCcCHHH
Confidence            124678999999887654       25999999999999998532210     0         0 000112234789999


Q ss_pred             HHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          260 VAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       260 va~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +|++++.++..+.  ..++++++.++
T Consensus       234 vA~~v~~l~s~~~~~~tG~~~~vdgG  259 (263)
T 3ak4_A          234 VADVVVFLASDAARFMTGQGINVTGG  259 (263)
T ss_dssp             HHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             HHHHHHHHhCccccCCCCCEEEECcC
Confidence            9999977775432  35778888764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.95  E-value=2.7e-28  Score=209.97  Aligned_cols=208  Identities=15%  Similarity=0.111  Sum_probs=153.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI------  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~------  132 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+++      
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANH   83 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998776554322   124578899999999 77776665      


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        ++ +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...         
T Consensus        84 ~~g~-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------  153 (260)
T 2ae2_A           84 FHGK-LNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV---------  153 (260)
T ss_dssp             TTTC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC---------
T ss_pred             cCCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC---------
Confidence              45 9999999996532        245567899999999999998    34566899999998754321         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----e----eccccccccCCCCHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----I----METEDTLYEGTISRDQVAE  262 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~----~~~~~~~~~~~v~~~Dva~  262 (301)
                         .....|+.+|.+.+.+.+       ..|+++++|+||.+.|++.....     .    ..........+.+++|+|+
T Consensus       154 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~  230 (260)
T 2ae2_A          154 ---PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAA  230 (260)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHH
T ss_pred             ---CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCCCCCCCCHHHHHH
Confidence               224679999999987664       24899999999999987532110     0    0000112234789999999


Q ss_pred             HHHHHhcCCC--CCCcEEEeecC
Q 022216          263 VAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       263 ~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++.++..+.  ..++++++.++
T Consensus       231 ~v~~l~s~~~~~~tG~~~~vdgG  253 (260)
T 2ae2_A          231 MVAFLCFPAASYVTGQIIYVDGG  253 (260)
T ss_dssp             HHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHcCccccCCCCCEEEECCC
Confidence            9976664332  35777887664

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.95  E-value=7e-29  Score=213.04  Aligned_cols=212  Identities=15%  Similarity=0.135  Sum_probs=157.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-------cCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~~  135 (301)
                      .+++|++|||||+||||++++++|+++|++|++++|+.+.+++...+...++.++.+|++| .+++.+.+       +. 
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~-   82 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIAD-LNEIAVLGAAAGQTLGA-   82 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSS-
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHHhCC-
Confidence            3578999999999999999999999999999999999877766554344688999999999 66665444       45 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++.+.  ..++||++||...+...            ....
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~  150 (255)
T 4eso_A           83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH------------PGMS  150 (255)
T ss_dssp             EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC------------TTBH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------------CCch
Confidence            9999999997542        345667899999999999999653  23699999998755321            2357


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec----------cccccccCCCCHHHHHHHHHHHh
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME----------TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~----------~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      .|..+|.+.+.+.+       ..|++++.|+||++.|++........          ........+.+++|+|++++.++
T Consensus       151 ~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~  230 (255)
T 4eso_A          151 VYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLA  230 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCCCCCcCHHHHHHHHHHHc
Confidence            89999999887653       35899999999999998653211000          00112234678999999997666


Q ss_pred             cC-CCCCCcEEEeecCCCCCCcCH
Q 022216          269 LH-PESSYKVVEIISRVDAPKRSY  291 (301)
Q Consensus       269 ~~-~~~~~~~~~v~~~~~~~~~s~  291 (301)
                      .. ....|+++++.++   ...++
T Consensus       231 s~~~~itG~~i~vdGG---~~~~l  251 (255)
T 4eso_A          231 FEATFTTGAKLAVDGG---LGQKL  251 (255)
T ss_dssp             HTCTTCCSCEEEESTT---TTTTB
T ss_pred             CcCcCccCCEEEECCC---ccccC
Confidence            53 2235677777664   55444

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.95  E-value=8.4e-28  Score=205.20  Aligned_cols=205  Identities=14%  Similarity=0.133  Sum_probs=151.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhcc---ccCCCCeEEEEccCCCChHhHHHHhc-------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-------  133 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~-------  133 (301)
                      .+|++|||||+||||++++++|+++|++|++++|+. +..++..   .....++.++.+|++| .+++.+.+.       
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVAD-ADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999988754 3333221   2245678999999999 766666554       


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      + +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...            
T Consensus        82 ~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  148 (246)
T 3osu_A           82 S-LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGN------------  148 (246)
T ss_dssp             C-CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC------------
T ss_pred             C-CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC------------
Confidence            5 9999999997542        235567899999999999998    55566899999998754221            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHhcC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .....|+.+|.+.+.+.+       ..|+++++|+||++.|++.......    .........+.+++|+|++++.++..
T Consensus       149 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~  228 (246)
T 3osu_A          149 PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASD  228 (246)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSG
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            234678999998886653       4689999999999999875432110    00112223467899999999665543


Q ss_pred             CC--CCCcEEEeecC
Q 022216          271 PE--SSYKVVEIISR  283 (301)
Q Consensus       271 ~~--~~~~~~~v~~~  283 (301)
                      +.  ..++++++.++
T Consensus       229 ~~~~itG~~i~vdgG  243 (246)
T 3osu_A          229 KAKYITGQTIHVNGG  243 (246)
T ss_dssp             GGTTCCSCEEEESTT
T ss_pred             cccCCCCCEEEeCCC
Confidence            32  34778888764

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.95  E-value=3.4e-27  Score=211.77  Aligned_cols=206  Identities=17%  Similarity=0.192  Sum_probs=159.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh--hhccccCCCCeEEEEcc-CCCChHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA--KTTLSKDNPSLQIVKAD-VTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ++|+||||||||+||++++++|+++|++|++++|++++.  ..+.  ...+++++.+| ++| .+++.+++.+ +|+|||
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~--~~~~v~~v~~D~l~d-~~~l~~~~~~-~d~Vi~   79 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ--AIPNVTLFQGPLLNN-VPLMDTLFEG-AHLAFI   79 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHH--TSTTEEEEESCCTTC-HHHHHHHHTT-CSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHh--hcCCcEEEECCccCC-HHHHHHHHhc-CCEEEE
Confidence            468999999999999999999999999999999988764  2222  22478999999 999 8999999999 999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccc--cccccCCCCCCcchhhcchhhHHHHHHHHHHHHH
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSIL--VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~--~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (301)
                      |++...       .+.|..+ .++++++++.+ +++||++||..  .|+.             .+...|+.+|.++|+++
T Consensus        80 ~a~~~~-------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~-------------~~~~~y~~sK~~~E~~~  138 (352)
T 1xgk_A           80 NTTSQA-------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP-------------WPAVPMWAPKFTVENYV  138 (352)
T ss_dssp             CCCSTT-------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS-------------CCCCTTTHHHHHHHHHH
T ss_pred             cCCCCC-------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC-------------CCCccHHHHHHHHHHHH
Confidence            987431       1457776 99999999998 99999999985  2321             11245779999999999


Q ss_pred             HHcCCcEEEEecCcccCCCCCCc--------------ee--eccccccccCCCCH-HHHHHHHHHHhcCCC--CCCcEEE
Q 022216          219 RKSGINYTIIRPGGLRNEPPTGN--------------II--METEDTLYEGTISR-DQVAEVAVEALLHPE--SSYKVVE  279 (301)
Q Consensus       219 ~~~~i~~~~irpg~v~~~~~~~~--------------~~--~~~~~~~~~~~v~~-~Dva~~~~~~l~~~~--~~~~~~~  279 (301)
                      ++.++++++|||+. +++.....              +.  .........+++++ +|+|++++.++.++.  ..+++|+
T Consensus       139 ~~~gi~~~ivrpg~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~  217 (352)
T 1xgk_A          139 RQLGLPSTFVYAGI-YNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIA  217 (352)
T ss_dssp             HTSSSCEEEEEECE-EGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEE
T ss_pred             HHcCCCEEEEecce-ecCCchhcccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchhhCCeEEE
Confidence            98999999999985 45432211              10  01111222357898 899999999997652  2578999


Q ss_pred             eecCCCCCCcCHHHHHHHhhc
Q 022216          280 IISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       280 v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.+    +.+|+.|+++.+.+
T Consensus       218 l~~----~~~s~~e~~~~i~~  234 (352)
T 1xgk_A          218 LTF----ETLSPVQVCAAFSR  234 (352)
T ss_dssp             ECS----EEECHHHHHHHHHH
T ss_pred             Eec----CCCCHHHHHHHHHH
Confidence            995    56999999998875

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.95  E-value=3.7e-28  Score=211.92  Aligned_cols=217  Identities=15%  Similarity=0.096  Sum_probs=154.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC------------chhhhc---cccCCCCeEEEEccCCCChHh
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL------------DKAKTT---LSKDNPSLQIVKADVTEGSAK  127 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~------------~~~~~~---~~~~~~~~~~~~~Dl~~~~~~  127 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.            ..+++.   ......++.++.+|++| .++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~   85 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD-RAA   85 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC-HHH
Confidence            46789999999999999999999999999999999872            222211   11245689999999999 766


Q ss_pred             HHHHhc-------CCCCEEEEccCCCCC------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCC
Q 022216          128 LSEAIG-------DDSEAVVCATGFQPG------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       128 ~~~~~~-------~~~d~Vi~~Ag~~~~------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~  192 (301)
                      +.+.+.       + +|+||||||+...      ++|+..+++|+.|++++++++...  +.++||++||...+......
T Consensus        86 v~~~~~~~~~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~  164 (287)
T 3pxx_A           86 VSRELANAVAEFGK-LDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQP  164 (287)
T ss_dssp             HHHHHHHHHHHHSC-CCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCC-CCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccc
Confidence            666554       5 9999999997532      345677899999999999999764  34699999998866433222


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----e---------------cc
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----M---------------ET  246 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~---------------~~  246 (301)
                      +..+ ..+......|+.+|.+.+.+.+       ..||+++.|+||++.|++......    .               ..
T Consensus       165 ~~~~-~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (287)
T 3pxx_A          165 PGAG-GPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPA  243 (287)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHGGG
T ss_pred             cccc-ccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHHHHhhhhh
Confidence            2111 1122456789999999987654       259999999999999997653110    0               01


Q ss_pred             ccccccCCCCHHHHHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          247 EDTLYEGTISRDQVAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       247 ~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      .......+.+++|+|++++.++ ++.   ..|+++++.++
T Consensus       244 ~~~~~~~~~~p~dva~~v~fL~-s~~a~~itG~~i~vdGG  282 (287)
T 3pxx_A          244 MQAMPTPYVEASDISNAVCFLA-SDESRYVTGLQFKVDAG  282 (287)
T ss_dssp             GCSSSCSCBCHHHHHHHHHHHH-SGGGTTCCSCEEEESTT
T ss_pred             hcccCCCCCCHHHHHhhHheec-chhhcCCCCceEeECch
Confidence            1111245789999999996555 443   34667777664

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.95  E-value=4.4e-28  Score=206.37  Aligned_cols=207  Identities=14%  Similarity=0.090  Sum_probs=155.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi  140 (301)
                      ++++|+||||||+|+||++++++|+++|++|++++|+.++.++.... ..++.++.+|++| .+++.+++..  ++|+||
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~D~~~-~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE-CPGIEPVCVDLGD-WDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-STTCEEEECCTTC-HHHHHHHHTTCCCCSEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-ccCCCcEEecCCC-HHHHHHHHHHcCCCCEEE
Confidence            46789999999999999999999999999999999987766554331 2467788999999 8888888764  489999


Q ss_pred             EccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       141 ~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      ||||....        ++++..+++|+.++.++++++.+    .+ .++||++||..+|...            .....|
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~Y  149 (244)
T 1cyd_A           82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------PNLITY  149 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TTBHHH
T ss_pred             ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC------------CCcchh
Confidence            99996532        23455789999999999998854    34 5799999999866432            124679


Q ss_pred             HHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhcCCC--
Q 022216          208 LIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPE--  272 (301)
Q Consensus       208 ~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~--  272 (301)
                      +.+|.+.|.+.+.       .++++++|+||+++|++........      ........+++++|+|++++.++..+.  
T Consensus       150 ~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~  229 (244)
T 1cyd_A          150 SSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSAS  229 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCCccCCCCHHHHHHHHHHHhCchhhc
Confidence            9999999876642       5899999999999997532110000      001122468899999999988876542  


Q ss_pred             CCCcEEEeecC
Q 022216          273 SSYKVVEIISR  283 (301)
Q Consensus       273 ~~~~~~~v~~~  283 (301)
                      ..++.+++.++
T Consensus       230 ~~G~~~~v~gG  240 (244)
T 1cyd_A          230 TSGGGILVDAG  240 (244)
T ss_dssp             CCSSEEEESTT
T ss_pred             ccCCEEEECCC
Confidence            34677777663

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.95  E-value=3.7e-28  Score=209.03  Aligned_cols=207  Identities=15%  Similarity=0.115  Sum_probs=153.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+++.      
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK-AEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999999999998766544321   134578899999999 766665554      


Q ss_pred             -CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 -DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                       + +|+||||||....         ++|+..+++|+.+++++++++.    +.+.++||++||...|...          
T Consensus        90 g~-iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  158 (260)
T 2zat_A           90 GG-VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPF----------  158 (260)
T ss_dssp             SC-CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC----------
T ss_pred             CC-CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCC----------
Confidence             5 9999999996431         2355678999999999998874    4566899999999866321          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~  266 (301)
                        .....|+.+|.+.+.+.+       ..|+++++|+||++.+++........      ........+.+++|+|++++.
T Consensus       159 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~v~~  236 (260)
T 2zat_A          159 --PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSF  236 (260)
T ss_dssp             --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHHHTCSSCBCGGGGHHHHHH
T ss_pred             --CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence              224678999999987664       25899999999999998643211000      001112347899999999976


Q ss_pred             HhcCCC--CCCcEEEeecC
Q 022216          267 ALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~~  283 (301)
                      ++..+.  ..++++++.++
T Consensus       237 l~s~~~~~~tG~~~~vdgG  255 (260)
T 2zat_A          237 LCSEDASYITGETVVVGGG  255 (260)
T ss_dssp             HTSGGGTTCCSCEEEESTT
T ss_pred             HcCcccCCccCCEEEECCC
Confidence            665432  35778888774

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.95  E-value=9.7e-28  Score=207.26  Aligned_cols=208  Identities=14%  Similarity=0.095  Sum_probs=151.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhc---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIG---  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~---  133 (301)
                      .++++|++|||||+|+||++++++|+++|++|++++|+.++.++....     ...++.++.+|++| .+++.+++.   
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~   87 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATT   87 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC-HHHHHHHHHHHH
Confidence            356789999999999999999999999999999999987665543221     14678999999999 776666554   


Q ss_pred             ----CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCc
Q 022216          134 ----DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       134 ----~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                          + +|+||||||....         ++|+..+++|+.|++++++++    ++.+.++||++||...+...       
T Consensus        88 ~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------  159 (267)
T 1iy8_A           88 ERFGR-IDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI-------  159 (267)
T ss_dssp             HHHSC-CSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC-------
T ss_pred             HHcCC-CCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCC-------
Confidence                5 9999999996532         235567899999998877765    45566899999998754221       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc-------eee-----ccccccccCCCCH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN-------IIM-----ETEDTLYEGTISR  257 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~-------~~~-----~~~~~~~~~~v~~  257 (301)
                           .....|..+|.+.+.+.+       ..|+++++|+||++.|++....       ...     .........+.++
T Consensus       160 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  234 (267)
T 1iy8_A          160 -----GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEA  234 (267)
T ss_dssp             -----SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCBCH
T ss_pred             -----CCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCCCCCCcCH
Confidence                 224678999999886654       3599999999999999753221       000     0001112346799


Q ss_pred             HHHHHHHHHHhcCC--CCCCcEEEeecC
Q 022216          258 DQVAEVAVEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       258 ~Dva~~~~~~l~~~--~~~~~~~~v~~~  283 (301)
                      +|+|++++.++..+  ...++++++.++
T Consensus       235 ~dvA~~v~~l~s~~~~~~tG~~i~vdGG  262 (267)
T 1iy8_A          235 PEIAAVVAFLLSDDASYVNATVVPIDGG  262 (267)
T ss_dssp             HHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHHcCccccCCCCCEEEECCC
Confidence            99999997666433  235677777664

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.95  E-value=1e-28  Score=214.45  Aligned_cols=207  Identities=17%  Similarity=0.137  Sum_probs=154.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-------cCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~~  135 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+..++...+...++.++.+|++| .+++.+.+       ++ 
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~-  103 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSD-EQQIIAMVDACVAAFGG-  103 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTC-HHHHHHHHHHHHHHHSS-
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCC-HHHHHHHHHHHHHHcCC-
Confidence            5679999999999999999999999999999999999877666544345688999999999 76665554       35 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||+...        ++|+..+++|+.|++++++++.    +.+.++||++||...+..            ...
T Consensus       104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------------~~~  171 (277)
T 3gvc_A          104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVA------------VGG  171 (277)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC------------CTT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC------------CCC
Confidence            9999999997542        2355678999999999999874    345679999999875422            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------eccc----cccccCCCCHHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------METE----DTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~~~~----~~~~~~~v~~~Dva~~~~  265 (301)
                      ...|+.+|.+.+.+.+       ..|+++++|+||++.|++......       ....    ......+.+++|+|++++
T Consensus       172 ~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~  251 (277)
T 3gvc_A          172 TGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVV  251 (277)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHHHHHHSSCBCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhhhccccCCCCHHHHHHHHH
Confidence            4789999999987654       368999999999999985322110       0000    112234689999999997


Q ss_pred             HHhcCCC--CCCcEEEeecC
Q 022216          266 EALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~~  283 (301)
                      .++....  ..|+++++.++
T Consensus       252 ~L~s~~a~~itG~~i~vdGG  271 (277)
T 3gvc_A          252 FLLSDDASMITGTTQIADGG  271 (277)
T ss_dssp             HHHSGGGTTCCSCEEEESTT
T ss_pred             HHcCCccCCccCcEEEECCc
Confidence            6664332  45677777664

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.95  E-value=3.9e-28  Score=209.65  Aligned_cols=208  Identities=17%  Similarity=0.105  Sum_probs=151.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+++++.......++.++.+|++| .+++.+++.       +
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~  101 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSD-RKSIKQLAEVAEREMEG  101 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHHHHHHHTS
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence            45679999999999999999999999999999999999877766554445689999999999 766666554       5


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+..            ..
T Consensus       102 -iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~------------~~  168 (266)
T 3grp_A          102 -IDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVG------------NP  168 (266)
T ss_dssp             -CCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------------------
T ss_pred             -CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCC------------CC
Confidence             9999999997542        245667899999988888776    3456679999999865421            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----eccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----METEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ....|..+|.+.+.+.+       ..|+++++|+||++.+++......    ..........+.+++|+|++++.++...
T Consensus       169 ~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~  248 (266)
T 3grp_A          169 GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDE  248 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGG
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc
Confidence            35779999998886553       368999999999999975332110    0011122234678999999997655433


Q ss_pred             C--CCCcEEEeecC
Q 022216          272 E--SSYKVVEIISR  283 (301)
Q Consensus       272 ~--~~~~~~~v~~~  283 (301)
                      .  ..|+++++.++
T Consensus       249 ~~~itG~~i~vdGG  262 (266)
T 3grp_A          249 AAYLTGQTLHINGG  262 (266)
T ss_dssp             GTTCCSCEEEESTT
T ss_pred             ccCccCCEEEECCC
Confidence            2  35777777664

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.95  E-value=1.3e-27  Score=205.56  Aligned_cols=207  Identities=15%  Similarity=0.164  Sum_probs=152.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC-----CCCeEEEEccCCCChHhHHHHhc----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD-----NPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.++.++...+.     ..++.++.+|++| .+++.+++.    
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~   82 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE-PGDIDRLFEKARD   82 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999876655432211     2378999999999 888888776    


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        + +|+||||||....        ++|+..+++|+.|++++++++.    +.+.++||++||...+...          
T Consensus        83 ~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  151 (260)
T 2z1n_A           83 LGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPW----------  151 (260)
T ss_dssp             TTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             hcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCC----------
Confidence              5 9999999996432        2456678999999988888763    4566899999999765321          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCC---------cee----ec--cccccccCCCCH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTG---------NII----ME--TEDTLYEGTISR  257 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~---------~~~----~~--~~~~~~~~~v~~  257 (301)
                        .....|..+|.+.+.+.+       ..|+++++|+||++.|++...         ...    ..  ........+.++
T Consensus       152 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  229 (260)
T 2z1n_A          152 --QDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKP  229 (260)
T ss_dssp             --TTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------CCTTSSCCCH
T ss_pred             --CCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCCCCCccCH
Confidence              224678889988876553       358999999999999987541         100    00  001112346799


Q ss_pred             HHHHHHHHHHhcCC--CCCCcEEEeecC
Q 022216          258 DQVAEVAVEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       258 ~Dva~~~~~~l~~~--~~~~~~~~v~~~  283 (301)
                      +|+|++++.++..+  ...++++++.++
T Consensus       230 ~dva~~v~~l~s~~~~~~tG~~i~vdGG  257 (260)
T 2z1n_A          230 EELASVVAFLASEKASFITGAVIPVDGG  257 (260)
T ss_dssp             HHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence            99999997766542  235677777663

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.95  E-value=2e-28  Score=215.13  Aligned_cols=223  Identities=15%  Similarity=0.151  Sum_probs=161.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .++++|+||||||+||||++++++|+++|++|++++|+.++.++....    ...++.++.+|++| .+++.+++..   
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~  100 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIK  100 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999987665543321    14678999999999 7766665542   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH-----cCCCEEEEecccccccccCCCCCCcch
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK-----RGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~-----~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         ++|+||||||....        ++++..+++|+.++.++++++.+     .+.++||++||...+..          
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~----------  170 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG----------  170 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC----------
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC----------
Confidence               38999999996432        23556789999999999888743     34579999999875432          


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-------cccccccCCCCHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-------TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-------~~~~~~~~~v~~~Dva~~~  264 (301)
                        ..+...|+.+|.+.+.+.+       ..|+++++|+||++.|+.........       ........+.+++|+|+++
T Consensus       171 --~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~  248 (302)
T 1w6u_A          171 --SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLA  248 (302)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHH
T ss_pred             --CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCcCCCCCHHHHHHHH
Confidence              1235679999999987664       26899999999999987322211000       0011123467999999999


Q ss_pred             HHHhcCCC--CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          265 VEALLHPE--SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.++..+.  ..++++++.++   ..+++.|+++.+.+
T Consensus       249 ~~l~~~~~~~~~G~~~~v~gg---~~~~~~~~~~~~~~  283 (302)
T 1w6u_A          249 AFLCSDYASWINGAVIKFDGG---EEVLISGEFNDLRK  283 (302)
T ss_dssp             HHHTSGGGTTCCSCEEEESTT---HHHHHHSTTGGGGG
T ss_pred             HHHcCCcccccCCCEEEECCC---eeeccCCccccchh
Confidence            77765432  25778888875   77888888776654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.95  E-value=1.6e-28  Score=212.14  Aligned_cols=214  Identities=16%  Similarity=0.164  Sum_probs=157.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+.++.++....     ...++.++.+|++| .+++.+++..    
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH   83 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC-HHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999987665432211     13468899999999 7666655532    


Q ss_pred             --CCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHH----HHcC---CCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          135 --DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEAC----RKRG---VNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~----~~~~---~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                        ++|+||||||....++|+..+++|+.+++++++++    ++.+   .++||++||...+...            ....
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~  151 (267)
T 2gdz_A           84 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------------AQQP  151 (267)
T ss_dssp             HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------TTCH
T ss_pred             cCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC------------CCCc
Confidence              38999999998777788889999999877766665    3332   4799999999765421            1235


Q ss_pred             HHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCcee---eccc---------cccccCCCCHHHHHHHH
Q 022216          206 LTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNII---METE---------DTLYEGTISRDQVAEVA  264 (301)
Q Consensus       206 ~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~---~~~~---------~~~~~~~v~~~Dva~~~  264 (301)
                      .|..+|.+.+.+.+         ..|+++++|+||++.|++......   ....         .....++++++|+|+++
T Consensus       152 ~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v  231 (267)
T 2gdz_A          152 VYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGL  231 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHHHhccccCCCHHHHHHHH
Confidence            78889988876543         368999999999999875321100   0000         00112468999999999


Q ss_pred             HHHhcCCCCCCcEEEeecCCCCCCcCHHH
Q 022216          265 VEALLHPESSYKVVEIISRVDAPKRSYED  293 (301)
Q Consensus       265 ~~~l~~~~~~~~~~~v~~~~~~~~~s~~e  293 (301)
                      +.++..+...++++++.++   +..++.|
T Consensus       232 ~~l~s~~~~~G~~~~v~gg---~~~~~~~  257 (267)
T 2gdz_A          232 ITLIEDDALNGAIMKITTS---KGIHFQD  257 (267)
T ss_dssp             HHHHHCTTCSSCEEEEETT---TEEEECC
T ss_pred             HHHhcCcCCCCcEEEecCC---CcccccC
Confidence            8888776677889999885   5555444

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.95  E-value=2.6e-27  Score=205.93  Aligned_cols=207  Identities=18%  Similarity=0.129  Sum_probs=151.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-------------Cchhhhc---cccCCCCeEEEEccCCCChH
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-------------LDKAKTT---LSKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-------------~~~~~~~---~~~~~~~~~~~~~Dl~~~~~  126 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+             .+.+++.   ......++.++.+|++| .+
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~   90 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD-DA   90 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC-HH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HH
Confidence            4679999999999999999999999999999999984             2332222   12245688999999999 76


Q ss_pred             hHHHHhc-------CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccc
Q 022216          127 KLSEAIG-------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVN  186 (301)
Q Consensus       127 ~~~~~~~-------~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~  186 (301)
                      ++.+.+.       + +|+||||||....        ++|+..+++|+.|++++++++.    +.+ .++||++||...+
T Consensus        91 ~v~~~~~~~~~~~g~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  169 (280)
T 3pgx_A           91 ALRELVADGMEQFGR-LDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGL  169 (280)
T ss_dssp             HHHHHHHHHHHHHCC-CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhc
Confidence            6666554       5 9999999997542        3456678999999999999983    333 5799999998754


Q ss_pred             cccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---------ec----c
Q 022216          187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---------ME----T  246 (301)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---------~~----~  246 (301)
                      ...            .....|..+|.+.+.+.+       .+||+++.|+||++.|++......         ..    .
T Consensus       170 ~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~  237 (280)
T 3pgx_A          170 KAT------------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPP  237 (280)
T ss_dssp             SCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSCC
T ss_pred             cCC------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhhh
Confidence            321            224678999999886653       368999999999999997653110         00    0


Q ss_pred             ccccccCCCCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          247 EDTLYEGTISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       247 ~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      .......+.+++|+|++++.++..+.  ..|+++++.++
T Consensus       238 ~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  276 (280)
T 3pgx_A          238 MPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKG  276 (280)
T ss_dssp             BTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTT
T ss_pred             cccCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            11111247899999999976664332  35777777663

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.95  E-value=1.2e-27  Score=205.00  Aligned_cols=207  Identities=14%  Similarity=0.134  Sum_probs=142.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++..    
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN-EDEVTAFLNAADAH   81 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC-HHHHHHHHHHHHhh
Confidence            45678999999999999999999999999999999999887665432   135689999999999 7777766641    


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...            
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  149 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGG------------  149 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCC------------
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCC------------
Confidence             39999999997543        235567899999999999887    44556799999998754221            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcE-EEEecCcccCCCCCCceeec---cccccccCCCCHHHHHHHHHHHhcC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINY-TIIRPGGLRNEPPTGNIIME---TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~-~~irpg~v~~~~~~~~~~~~---~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .....|+.+|.+.+.+.+       ..|+++ ++|+||.+.+++........   .......++.+++|+|++++.++.+
T Consensus       150 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~~~~l~s~  229 (252)
T 3h7a_A          150 SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLYQQ  229 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------CCHHHHHHHHHHHHHC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhhhhhhhhcCCccCCCHHHHHHHHHHHHhC
Confidence            224678999999886653       368999 89999999998754432111   1111122478999999999888776


Q ss_pred             CCCCCcEEEeec
Q 022216          271 PESSYKVVEIIS  282 (301)
Q Consensus       271 ~~~~~~~~~v~~  282 (301)
                      +. ...+.++..
T Consensus       230 ~~-~~~~~~i~~  240 (252)
T 3h7a_A          230 PK-SAWTFEMEI  240 (252)
T ss_dssp             CG-GGBCSEEEE
T ss_pred             ch-hcceeeEEe
Confidence            65 343555544

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.95  E-value=1.5e-27  Score=203.18  Aligned_cols=207  Identities=14%  Similarity=0.125  Sum_probs=155.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi  140 (301)
                      ++++|+||||||+|+||++++++|+++|++|++++|+.++.+++..+. .+..++.+|++| .+++.+++..  ++|+||
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~-~~~~~~~~~~~~~id~vi   81 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-PGIEPVCVDLGD-WEATERALGSVGPVDLLV   81 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-TTCEEEECCTTC-HHHHHHHHTTCCCCCEEE
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-CCCCEEEEeCCC-HHHHHHHHHHcCCCCEEE
Confidence            457899999999999999999999999999999999877665543322 356788999999 8888888863  499999


Q ss_pred             EccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       141 ~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      ||||....        ++++..+++|+.++.++++++.+    .+ .++||++||...+...            .+...|
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~Y  149 (244)
T 3d3w_A           82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------TNHSVY  149 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TTBHHH
T ss_pred             ECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC------------CCCchH
Confidence            99996532        23456789999999999988854    34 5799999998755321            235789


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhcCCC--
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPE--  272 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~--  272 (301)
                      +.+|.+.|.+.+       ..|+++++|+||+++|++........      ........+++++|+|++++.++..+.  
T Consensus       150 ~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~  229 (244)
T 3d3w_A          150 CSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGM  229 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccC
Confidence            999999997664       25899999999999998643211000      001122357899999999988776432  


Q ss_pred             CCCcEEEeecC
Q 022216          273 SSYKVVEIISR  283 (301)
Q Consensus       273 ~~~~~~~v~~~  283 (301)
                      ..++++++.++
T Consensus       230 ~~G~~~~v~gG  240 (244)
T 3d3w_A          230 TTGSTLPVEGG  240 (244)
T ss_dssp             CCSCEEEESTT
T ss_pred             CCCCEEEECCC
Confidence            35778888764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.95  E-value=2.8e-27  Score=205.04  Aligned_cols=208  Identities=16%  Similarity=0.114  Sum_probs=149.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI------  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~------  132 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++      
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHV   95 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998766554321   134578999999999 77666655      


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcch
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        ++ +|+||||||....        ++|+..+++|+.|++++++++.    +.+.++||++||...+...         
T Consensus        96 ~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~---------  165 (273)
T 1ae1_A           96 FDGK-LNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL---------  165 (273)
T ss_dssp             TTSC-CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC---------
T ss_pred             cCCC-CcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC---------
Confidence              55 9999999997532        2355667899999999999883    4456899999999865422         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-c---------cccccCCCCHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-E---------DTLYEGTISRDQVA  261 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-~---------~~~~~~~v~~~Dva  261 (301)
                         .....|..+|.+.+.+.+       ..|+++++|+||++.|++......... .         ......+.+++|+|
T Consensus       166 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA  242 (273)
T 1ae1_A          166 ---PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVS  242 (273)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCSCBCHHHHH
T ss_pred             ---CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCCCCCcCHHHHH
Confidence               224678999999987653       359999999999999987543211000 0         01122467999999


Q ss_pred             HHHHHHhcCCC--CCCcEEEeecC
Q 022216          262 EVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       262 ~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++++.++..+.  ..++++++.++
T Consensus       243 ~~v~~l~s~~~~~~tG~~i~vdGG  266 (273)
T 1ae1_A          243 ALIAFLCFPAASYITGQIIWADGG  266 (273)
T ss_dssp             HHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHhCccccCcCCCEEEECCC
Confidence            99976664322  35677777664

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.95  E-value=4.4e-28  Score=212.10  Aligned_cols=209  Identities=20%  Similarity=0.215  Sum_probs=152.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---C-CCCeEEEEccCCCChHhHHHHh-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---D-NPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~-~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+++++...+   . ..++.++.+|++| .+++.+++     
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  115 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD-PGSCADAARTVVD  115 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC-HHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999998776553321   2 2578999999999 66655544     


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        +. +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+.  .+       
T Consensus       116 ~~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~--~~-------  185 (293)
T 3rih_A          116 AFGA-LDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV--TG-------  185 (293)
T ss_dssp             HHSC-CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT--BB-------
T ss_pred             HcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc--CC-------
Confidence              45 9999999997543        234567899999999999998    455678999999986321  01       


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce---ee-ccccccccCCCCHHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI---IM-ETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~---~~-~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                        ......|+.+|.+.+.+.+       ..||++++|+||++.|++.....   .. .........+.+++|+|++++.+
T Consensus       186 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~fL  263 (293)
T 3rih_A          186 --YPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIPMGMLGSPVDIGHLAAFL  263 (293)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence              1234778999999887654       36899999999999997532211   00 00111223356899999999665


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +....  ..|+++++.++
T Consensus       264 ~s~~a~~itG~~i~vdGG  281 (293)
T 3rih_A          264 ATDEAGYITGQAIVVDGG  281 (293)
T ss_dssp             HSGGGTTCCSCEEEESTT
T ss_pred             hCccccCCCCCEEEECCC
Confidence            54322  35677777664

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.95  E-value=1.5e-27  Score=207.06  Aligned_cols=210  Identities=13%  Similarity=0.113  Sum_probs=154.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+.+.     
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ-PDQVRGMLDQMTGE  106 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999877655432   245688999999999 776666654     


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcch
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        + +|+||||||+...        ++|+..+++|+.|++++++++.+    .+ .++||++||...+.....       
T Consensus       107 ~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~-------  178 (276)
T 3r1i_A          107 LGG-IDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIP-------  178 (276)
T ss_dssp             HSC-CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCS-------
T ss_pred             cCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCC-------
Confidence              5 9999999997543        23556778999999999998743    33 368999999875432110       


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---ccccccccCCCCHHHHHHHHHHHh
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---ETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                         .....|..+|.+.+.+.+       ..||+++.|+||++.+++.......   .........+.+++|+|++++.++
T Consensus       179 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~  255 (276)
T 3r1i_A          179 ---QQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLADYHALWEPKIPLGRMGRPEELTGLYLYLA  255 (276)
T ss_dssp             ---SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGGGGHHHHGGGSTTSSCBCGGGSHHHHHHHH
T ss_pred             ---CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHc
Confidence               124678999999887653       3689999999999999875432110   011112234678999999996655


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      ....  ..|+++++.++
T Consensus       256 s~~~~~itG~~i~vdGG  272 (276)
T 3r1i_A          256 SAASSYMTGSDIVIDGG  272 (276)
T ss_dssp             SGGGTTCCSCEEEESTT
T ss_pred             CccccCccCcEEEECcC
Confidence            4322  35677777664

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.95  E-value=1.8e-28  Score=209.55  Aligned_cols=207  Identities=18%  Similarity=0.170  Sum_probs=153.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.++.++...+...++.++.+|++| .+++.+.+.       + 
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~-   80 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISD-PGSVKALFAEIQALTGG-   80 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCC-
Confidence            4578999999999999999999999999999999999877766544345689999999999 766666554       5 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcC-CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++    ++.+ .++||++||...+..            ..
T Consensus        81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~  148 (247)
T 3rwb_A           81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAG------------TP  148 (247)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHT------------CT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccC------------CC
Confidence            9999999997543        245667899999999999985    4444 579999999875432            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHHhcC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ....|..+|.+.+.+.+       .+|++++.|+||.+.+++........     ........+.+++|+|++++.++..
T Consensus       149 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~pedva~~v~~L~s~  228 (247)
T 3rwb_A          149 NMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPEHIADVVSFLASD  228 (247)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHHSSSCSCBCHHHHHHHHHHHHSG
T ss_pred             CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcccccCCCcCHHHHHHHHHHHhCc
Confidence            35678899988876553       36999999999999987532211000     0001223467899999999655543


Q ss_pred             CC--CCCcEEEeecC
Q 022216          271 PE--SSYKVVEIISR  283 (301)
Q Consensus       271 ~~--~~~~~~~v~~~  283 (301)
                      +.  ..|+++++.++
T Consensus       229 ~~~~itG~~i~vdGG  243 (247)
T 3rwb_A          229 DARWITGQTLNVDAG  243 (247)
T ss_dssp             GGTTCCSCEEEESTT
T ss_pred             cccCCCCCEEEECCC
Confidence            32  35677777664

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.95  E-value=6.7e-28  Score=207.45  Aligned_cols=213  Identities=14%  Similarity=0.071  Sum_probs=148.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.+++++...+...++.++.+|++| .+++.+.+..      +
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~   83 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISK-EADVDAAVEAALSKFGK   83 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence            56779999999999999999999999999999999999887776554445789999999999 7666665541      3


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHH----cC----CCEEEEecccccccccCCCCCCcch
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----RG----VNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~----~~----~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                      +|+||||||....         ++++..+++|+.+++++++++.+    .+    .++||++||...+..          
T Consensus        84 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------  153 (261)
T 3n74_A           84 VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRP----------  153 (261)
T ss_dssp             CCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSC----------
T ss_pred             CCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCC----------
Confidence            9999999997531         23456789999999999988732    21    357999999875421          


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec--------cccccccCCCCHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME--------TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~--------~~~~~~~~~v~~~Dva~~  263 (301)
                        ......|..+|.+.+.+.+       ..|++++.|+||.+.+++........        ........+.+++|+|++
T Consensus       154 --~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~  231 (261)
T 3n74_A          154 --RPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEA  231 (261)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------CTTSSCCCHHHHHHH
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhhcCCcCCCcCHHHHHHH
Confidence              1224678999999887653       36899999999999998654321100        011122347899999999


Q ss_pred             HHHHhcCCC--CCCcEEEeecCCCCCCcC
Q 022216          264 AVEALLHPE--SSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       264 ~~~~l~~~~--~~~~~~~v~~~~~~~~~s  290 (301)
                      ++.++....  ..|+++++.++   ..++
T Consensus       232 ~~~l~s~~~~~itG~~i~vdgG---~~~~  257 (261)
T 3n74_A          232 AAFLCSPQASMITGVALDVDGG---RSIG  257 (261)
T ss_dssp             HHHHTSGGGTTCCSCEEEESTT---TTC-
T ss_pred             HHHHcCCcccCcCCcEEEecCC---cccC
Confidence            976664222  45777887764   5554

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=205.62  Aligned_cols=215  Identities=19%  Similarity=0.105  Sum_probs=151.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CC-------CCeEEEEccCCCChHhHHHHh
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DN-------PSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-------~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      ++++|+||||||+|+||++++++|+++|++|++++|+.++.++....   ..       .++.++.+|++| .+++.+++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~   82 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSE-ARAARCLL   82 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTS-HHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCC-HHHHHHHH
Confidence            45689999999999999999999999999999999987765543321   11       568899999999 76666655


Q ss_pred             cC------CC-CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----C-CCEEEEecccccccccCCC
Q 022216          133 GD------DS-EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----G-VNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       133 ~~------~~-d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~-~~~iV~~SS~~~~~~~~~~  192 (301)
                      .+      ++ |+||||||....        ++++..+++|+.|+.++++++.+.    + .++||++||...+...   
T Consensus        83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---  159 (264)
T 2pd6_A           83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN---  159 (264)
T ss_dssp             HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC---
T ss_pred             HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC---
Confidence            43      26 999999997542        235567899999999999998543    4 4799999998644211   


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---ecc-ccccccCCCCHHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---MET-EDTLYEGTISRDQVA  261 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~~~-~~~~~~~~v~~~Dva  261 (301)
                               .+...|+.+|.+.+.+.+       ..|+++++|+||+++|++......   ... .......+.+++|+|
T Consensus       160 ---------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva  230 (264)
T 2pd6_A          160 ---------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVA  230 (264)
T ss_dssp             ---------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC----------CTGGGCTTCSCBCHHHHH
T ss_pred             ---------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHHHHHHHHHhCCCCCCCCHHHHH
Confidence                     234779999999887653       268999999999999987543110   000 011123467999999


Q ss_pred             HHHHHHhcCCC--CCCcEEEeecCCCCCCcCHHH
Q 022216          262 EVAVEALLHPE--SSYKVVEIISRVDAPKRSYED  293 (301)
Q Consensus       262 ~~~~~~l~~~~--~~~~~~~v~~~~~~~~~s~~e  293 (301)
                      ++++.++..+.  ..++++++.++   ..++...
T Consensus       231 ~~~~~l~~~~~~~~~G~~~~v~gg---~~~~~~~  261 (264)
T 2pd6_A          231 DVVAFLASEDSGYITGTSVEVTGG---LFMAENL  261 (264)
T ss_dssp             HHHHHHHSGGGTTCCSCEEEESTT---C------
T ss_pred             HHHHHHcCCcccCCCCCEEEECCC---ceecccc
Confidence            99987776432  45778887774   5555444

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.95  E-value=7.3e-27  Score=200.65  Aligned_cols=210  Identities=16%  Similarity=0.126  Sum_probs=154.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++++|+||||||+|+||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+++.     
T Consensus         9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   87 (260)
T 3awd_A            9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN-TESVQNAVRSVHEQ   87 (260)
T ss_dssp             GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998765543221   134578999999999 777776654     


Q ss_pred             --CCCCEEEEccCCCC-CC--------CCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcch
Q 022216          134 --DDSEAVVCATGFQP-GW--------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~-~~--------~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        + +|+||||||... ..        ++...+++|+.++.++++++.+    .+.++||++||...+.....       
T Consensus        88 ~~~-id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------  159 (260)
T 3awd_A           88 EGR-VDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRP-------  159 (260)
T ss_dssp             HSC-CCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS-------
T ss_pred             cCC-CCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCC-------
Confidence              5 999999999654 21        2345688999999999998853    45689999999875432111       


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~  265 (301)
                         .+...|+.+|.+.|.+.+       ..|+++++|+||+++|++........      ........+.+++|+|++++
T Consensus       160 ---~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  236 (260)
T 3awd_A          160 ---QQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQ  236 (260)
T ss_dssp             ---SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTTSSCBCHHHHHHHHH
T ss_pred             ---CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCcCCCCCHHHHHHHHH
Confidence               123679999999987664       26899999999999998754111000      00112234789999999998


Q ss_pred             HHhcCC--CCCCcEEEeecC
Q 022216          266 EALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~--~~~~~~~~v~~~  283 (301)
                      .++..+  ...++++++.++
T Consensus       237 ~l~~~~~~~~~G~~~~v~gg  256 (260)
T 3awd_A          237 FLASDAASLMTGAIVNVDAG  256 (260)
T ss_dssp             HHHSGGGTTCCSCEEEESTT
T ss_pred             HHhCchhccCCCcEEEECCc
Confidence            777543  235778888774

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.95  E-value=9.1e-28  Score=206.42  Aligned_cols=206  Identities=15%  Similarity=0.114  Sum_probs=150.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      ++|++|||||+||||++++++|+++|++|+++ .|+.+..++..   .....++.++.+|++| .+++.+++..      
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ-PAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            57999999999999999999999999999987 67665544332   2245689999999999 7666655532      


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+..            ..
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~  149 (258)
T 3oid_A           82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRY------------LE  149 (258)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSB------------CT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCC------------CC
Confidence            38999999996432        235567899999999999998    3445679999999875422            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee------ccccccccCCCCHHHHHHHHHHHhc
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM------ETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~------~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ....|+.+|.+.+.+.+       ..|++++.|+||++.|++.......      .........+.+++|+|++++.++.
T Consensus       150 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s  229 (258)
T 3oid_A          150 NYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVS  229 (258)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTTSSCBCHHHHHHHHHHHTS
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            35789999999987654       3589999999999999864332100      0011122347899999999976554


Q ss_pred             CCC--CCCcEEEeecC
Q 022216          270 HPE--SSYKVVEIISR  283 (301)
Q Consensus       270 ~~~--~~~~~~~v~~~  283 (301)
                      .+.  ..|+++++.++
T Consensus       230 ~~~~~itG~~i~vdGG  245 (258)
T 3oid_A          230 SKADMIRGQTIIVDGG  245 (258)
T ss_dssp             STTTTCCSCEEEESTT
T ss_pred             cccCCccCCEEEECCC
Confidence            432  45777887764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.95  E-value=1.6e-27  Score=203.49  Aligned_cols=208  Identities=12%  Similarity=0.105  Sum_probs=155.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+.+..     
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISD-IESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHc
Confidence            3568999999999999999999999999999999998876554332   235689999999999 7766665542     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|+||||||+...        ++++..+++|+.+++++++++.    +.+.++||++||...+...            
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------  148 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGN------------  148 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC------------
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC------------
Confidence             49999999997543        2455678999999999999873    3455799999998754321            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHhcC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .....|+.+|.+.+.+.+       ..|++++.|+||++.+++.......    .........+.+++|+|++++.++..
T Consensus       149 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~s~  228 (247)
T 3lyl_A          149 PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKSFIATKIPSGQIGEPKDIAAAVAFLASE  228 (247)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTTSTTCCCBCHHHHHHHHHHHHSG
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhCC
Confidence            235778999998876653       3689999999999999875442110    01112223477999999999776654


Q ss_pred             CC--CCCcEEEeecC
Q 022216          271 PE--SSYKVVEIISR  283 (301)
Q Consensus       271 ~~--~~~~~~~v~~~  283 (301)
                      +.  ..|+++++.++
T Consensus       229 ~~~~~tG~~i~vdgG  243 (247)
T 3lyl_A          229 EAKYITGQTLHVNGG  243 (247)
T ss_dssp             GGTTCCSCEEEESTT
T ss_pred             CcCCccCCEEEECCC
Confidence            32  35788888764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.95  E-value=4.5e-27  Score=204.23  Aligned_cols=212  Identities=17%  Similarity=0.131  Sum_probs=153.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC------------chhhhcc---ccCCCCeEEEEccCCCChH
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL------------DKAKTTL---SKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~------------~~~~~~~---~~~~~~~~~~~~Dl~~~~~  126 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.            +.+++..   .....++.++.+|++| .+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~   87 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD-RE   87 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC-HH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC-HH
Confidence            456799999999999999999999999999999999872            2222211   1134689999999999 77


Q ss_pred             hHHHHhc-------CCCCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccC
Q 022216          127 KLSEAIG-------DDSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAM  190 (301)
Q Consensus       127 ~~~~~~~-------~~~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~  190 (301)
                      ++.+++.       . +|+||||||+...    ++|+.++++|+.|++++++++.    +.+ .++||++||...+....
T Consensus        88 ~v~~~~~~~~~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~  166 (278)
T 3sx2_A           88 SLSAALQAGLDELGR-LDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG  166 (278)
T ss_dssp             HHHHHHHHHHHHHCC-CCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC
T ss_pred             HHHHHHHHHHHHcCC-CCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc
Confidence            7666654       5 9999999997543    3466788999999999999973    333 46999999987543211


Q ss_pred             CCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--------------ccccc
Q 022216          191 GQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--------------ETEDT  249 (301)
Q Consensus       191 ~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--------------~~~~~  249 (301)
                      .        +......|+.+|.+.+.+.+       ..||+++.|+||++.|++.......              .....
T Consensus       167 ~--------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (278)
T 3sx2_A          167 S--------ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNA  238 (278)
T ss_dssp             C--------SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTSCS
T ss_pred             c--------CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhhhh
Confidence            0        11235779999999987654       3589999999999999986542100              00111


Q ss_pred             cccCCCCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          250 LYEGTISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       250 ~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ....+.+++|+|++++.++....  ..|+++++.++
T Consensus       239 ~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG  274 (278)
T 3sx2_A          239 MPVEVLAPEDVANAVAWLVSDQARYITGVTLPVDAG  274 (278)
T ss_dssp             SSCSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             cCcCcCCHHHHHHHHHHHhCcccccccCCEEeECCC
Confidence            11357799999999976554322  45677777664

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.95  E-value=3.9e-28  Score=207.98  Aligned_cols=205  Identities=17%  Similarity=0.113  Sum_probs=132.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+.+.     
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD-PESAKAMADRTLAE   83 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            56779999999999999999999999999999999998876655432   235678999999999 766666654     


Q ss_pred             --CCCCEEEEccCCCC-----------CCCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCc
Q 022216          134 --DDSEAVVCATGFQP-----------GWDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~-----------~~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                        + +|+||||||+..           .++++..+++|+.|++++++++    ++.+.++||++||...|.         
T Consensus        84 ~g~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------  153 (253)
T 3qiv_A           84 FGG-IDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---------  153 (253)
T ss_dssp             HSC-CCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------
T ss_pred             cCC-CCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC---------
Confidence              5 999999999732           1235567899999988877776    445667999999997651         


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~  264 (301)
                            +...|+.+|.+.+.+.+       ..|++++.|+||++.|++........     ........+.+++|+|+++
T Consensus       154 ------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~  227 (253)
T 3qiv_A          154 ------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPDDLVGMC  227 (253)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------------------CCHHHHHH
T ss_pred             ------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhccCCCCCCCCHHHHHHHH
Confidence                  12457888888876653       25899999999999998654321100     0111122356899999999


Q ss_pred             HHHhcCCC--CCCcEEEeecC
Q 022216          265 VEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +.++..+.  ..++++++.++
T Consensus       228 ~~l~s~~~~~~tG~~~~vdgG  248 (253)
T 3qiv_A          228 LFLLSDEASWITGQIFNVDGG  248 (253)
T ss_dssp             HHHHSGGGTTCCSCEEEC---
T ss_pred             HHHcCccccCCCCCEEEECCC
Confidence            77765432  35788888774

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.95  E-value=1e-28  Score=213.85  Aligned_cols=209  Identities=17%  Similarity=0.147  Sum_probs=155.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+.+..    
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS-ESEIIEAFARLDEQ  100 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998876654332   245689999999999 7777666541    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|+||||||+...        ++|+..+++|+.|++++++++.    +.+.++||++||...+..            
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~------------  168 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELA------------  168 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSB------------
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCC------------
Confidence              39999999997532        3456678999999999988873    345679999999864321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee------ccccccccCCCCHHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM------ETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~------~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ......|+.+|.+.+.+.+       ..|++++.|+||++.+++.......      .........+.+++|+|++++.+
T Consensus       169 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L  248 (271)
T 4ibo_A          169 RATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFL  248 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTTCSCBCGGGGHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            1234678999999887653       3689999999999999864322110      00111223467899999999765


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +....  ..|+++++.++
T Consensus       249 ~s~~~~~itG~~i~vdGG  266 (271)
T 4ibo_A          249 SASASDYVNGQIIYVDGG  266 (271)
T ss_dssp             HSGGGTTCCSCEEEESTT
T ss_pred             hCccccCCCCcEEEECCC
Confidence            54322  35677777664

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.95  E-value=1e-26  Score=198.95  Aligned_cols=200  Identities=14%  Similarity=0.139  Sum_probs=141.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.+..      . .++.++.+|++| .+++.+++.       + 
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~------~-~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~-   74 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE------Q-YPFATEVMDVAD-AAQVAQVCQRLLAETER-   74 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS------C-CSSEEEECCTTC-HHHHHHHHHHHHHHCSC-
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh------c-CCceEEEcCCCC-HHHHHHHHHHHHHHcCC-
Confidence            46789999999999999999999999999999999986521      1 238889999999 777776664       5 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++|+..+++|+.+++++++++    ++.+.++||++||...+..            ...
T Consensus        75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~  142 (250)
T 2fwm_X           75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTP------------RIG  142 (250)
T ss_dssp             CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------------CTT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC------------CCC
Confidence            9999999997432        235567899999999999988    4556689999999875432            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----ec--cc--------cccccCCCCHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----ME--TE--------DTLYEGTISRDQVAE  262 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~~--~~--------~~~~~~~v~~~Dva~  262 (301)
                      ...|+.+|.+.+.+.+       ..|+++++|+||++.|++......    ..  ..        ......+.+++|+|+
T Consensus       143 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~  222 (250)
T 2fwm_X          143 MSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIAN  222 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------------CHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhhhcccccCCCCCCcCHHHHHH
Confidence            4679999999987654       259999999999999986432110    00  00        111223679999999


Q ss_pred             HHHHHhcCCC--CCCcEEEeecC
Q 022216          263 VAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       263 ~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++.++..+.  ..++++.+.++
T Consensus       223 ~v~~l~s~~~~~~tG~~i~vdGG  245 (250)
T 2fwm_X          223 TILFLASDLASHITLQDIVVDGG  245 (250)
T ss_dssp             HHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHhCccccCCCCCEEEECCC
Confidence            9977765432  45777777664

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.95  E-value=2.9e-27  Score=201.99  Aligned_cols=204  Identities=18%  Similarity=0.109  Sum_probs=151.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+.++.++...    ....++.++.+|++| .+++.+++.       +
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVAD-EGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999999999999998766554321    123578999999999 777776664       5


Q ss_pred             CCCEEEEccCCCCCC-----------CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 DSEAVVCATGFQPGW-----------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~-----------~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                       +|+||||||.....           +++..+++|+.+++++++++    ++.+.++||++||...+...          
T Consensus        81 -id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~----------  149 (250)
T 2cfc_A           81 -IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF----------  149 (250)
T ss_dssp             -CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             -CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC----------
Confidence             99999999964321           24456789999998887776    34467899999998765321          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~  266 (301)
                        .....|+.+|.+.+.+.+       ..|+++++|+||+++|++........      ........+.+++|+|++++.
T Consensus       150 --~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  227 (250)
T 2cfc_A          150 --PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMF  227 (250)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             --CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence              224679999999987664       24999999999999998754311100      001122346799999999988


Q ss_pred             HhcCCC--CCCcEEEeecC
Q 022216          267 ALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~~  283 (301)
                      ++..+.  ..++++++.++
T Consensus       228 l~~~~~~~~~G~~~~v~gG  246 (250)
T 2cfc_A          228 LAGEDATYVNGAALVMDGA  246 (250)
T ss_dssp             HHSTTCTTCCSCEEEESTT
T ss_pred             HcCchhhcccCCEEEECCc
Confidence            776543  34778887663

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.95  E-value=1.3e-27  Score=206.09  Aligned_cols=208  Identities=16%  Similarity=0.132  Sum_probs=141.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI------  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~------  132 (301)
                      +++++|+||||||+|+||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+++      
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSM   88 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998766554322   134578999999999 77666665      


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        ++ +|+||||||....        ++++..+++|+.++.++++++    ++.+.++||++||...+...         
T Consensus        89 ~~~~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------  158 (266)
T 1xq1_A           89 FGGK-LDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA---------  158 (266)
T ss_dssp             HTTC-CSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred             hCCC-CcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCC---------
Confidence              45 9999999996432        234556889999999999998    45567899999998755321         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----c-cccccccCCCCHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----E-TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~-~~~~~~~~~v~~~Dva~~~~~  266 (301)
                         .....|+.+|.+.+.+.+       ..|+++++|+||+++|++.......    . ........+.+++|+|++++.
T Consensus       159 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  235 (266)
T 1xq1_A          159 ---SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAF  235 (266)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------CCGGGGHHHHHH
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence               224678999999987664       2499999999999999875432100    0 001112246799999999977


Q ss_pred             HhcCCC--CCCcEEEeecC
Q 022216          267 ALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~~  283 (301)
                      ++..+.  ..++++++.++
T Consensus       236 l~~~~~~~~~G~~~~v~gG  254 (266)
T 1xq1_A          236 LCMPAASYITGQTICVDGG  254 (266)
T ss_dssp             HTSGGGTTCCSCEEECCCC
T ss_pred             HcCccccCccCcEEEEcCC
Confidence            665332  34677877764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.95  E-value=3.9e-28  Score=209.69  Aligned_cols=208  Identities=15%  Similarity=0.075  Sum_probs=152.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHh-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.+++++...+    ...++.++.+|++| .+++.+++     
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   94 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE-PDAPAELARRAAE   94 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-TTHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999988766543321    34679999999999 65555444     


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcc
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                        ++ +|+||||||+...        ++|+..+++|+.|++++++++.+    .+ .++||++||...+...        
T Consensus        95 ~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------  165 (266)
T 4egf_A           95 AFGG-LDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPL--------  165 (266)
T ss_dssp             HHTS-CSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------
T ss_pred             HcCC-CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCC--------
Confidence              45 9999999997542        23556789999999999998843    23 4699999998755321        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----e-ccccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----M-ETEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~-~~~~~~~~~~v~~~Dva~~~  264 (301)
                          .....|..+|.+.+.+.+       ..|++++.|+||++.|++......     . .........+.+++|+|+++
T Consensus       166 ----~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v  241 (266)
T 4egf_A          166 ----PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAVPHEVSDAV  241 (266)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTTSSCBCHHHHHHHH
T ss_pred             ----CCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence                224678999998886553       368999999999999985322110     0 00111223467899999999


Q ss_pred             HHHhcCC--CCCCcEEEeecC
Q 022216          265 VEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~--~~~~~~~~v~~~  283 (301)
                      +.++...  ...++++++.++
T Consensus       242 ~~L~s~~~~~itG~~i~vdGG  262 (266)
T 4egf_A          242 VWLASDAASMINGVDIPVDGG  262 (266)
T ss_dssp             HHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHhCchhcCccCcEEEECCC
Confidence            7655432  235677777664

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.95  E-value=1.8e-27  Score=204.81  Aligned_cols=206  Identities=18%  Similarity=0.120  Sum_probs=148.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhcccc---C-CCCeEEEEccCCCChHhHHHHhc-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSK---D-NPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~~~---~-~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++|++|||||+||||++++++|+++|++|++++|+.+. .++....   . ..++.++.+|++| .+++.+++.     
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999998776 5443221   1 4578899999999 776666554     


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        + +|+||||||....        ++|+.++++|+.|++++++++.    +.+.++||++||...+...          
T Consensus        81 ~g~-iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  149 (260)
T 1x1t_A           81 MGR-IDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS----------  149 (260)
T ss_dssp             HSC-CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             cCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCC----------
Confidence              5 9999999996532        2355678999999999998883    3456899999998765321          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----------c------cccccccCCCC
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----------E------TEDTLYEGTIS  256 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----------~------~~~~~~~~~v~  256 (301)
                        .....|+.+|.+.+.+.+       ..|+++++|+||++.|++.......          .      ........+.+
T Consensus       150 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  227 (260)
T 1x1t_A          150 --ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVT  227 (260)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBC
T ss_pred             --CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCCCCCcC
Confidence              224678999999987654       2589999999999999874432110          0      00011234679


Q ss_pred             HHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          257 RDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++|+|++++.++..+.  ..++++++.++
T Consensus       228 p~dva~~~~~l~s~~~~~~tG~~~~vdgG  256 (260)
T 1x1t_A          228 PEQLGGTAVFLASDAAAQITGTTVSVDGG  256 (260)
T ss_dssp             HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence            9999999977665332  35677777663

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.95  E-value=5.9e-28  Score=210.00  Aligned_cols=208  Identities=13%  Similarity=0.065  Sum_probs=154.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++.      
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGD-EALHEALVELAVRRF   83 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            3578999999999999999999999999999999999876655432   235688999999999 766666554      


Q ss_pred             -CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 -DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                       + +|+||||||+...         ++|+..+++|+.|++++++++.    +.+.++||++||...+...          
T Consensus        84 g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  152 (280)
T 3tox_A           84 GG-LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAG----------  152 (280)
T ss_dssp             SC-CCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBC----------
T ss_pred             CC-CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCC----------
Confidence             5 9999999996521         2456778999999999999873    3455799999998754211          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-c-------cccccccCCCCHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-E-------TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-~-------~~~~~~~~~v~~~Dva~~~  264 (301)
                       ......|+.+|.+.+.+.+       ..||++++|+||.+.|++....... .       ........+.+++|+|+++
T Consensus       153 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v  231 (280)
T 3tox_A          153 -FAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAA  231 (280)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTTSSCBCHHHHHHHH
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCccCCCcCHHHHHHHH
Confidence             1234678999999887653       3589999999999999875432100 0       0111223467999999999


Q ss_pred             HHHhcCCC--CCCcEEEeecC
Q 022216          265 VEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +.++..+.  ..|+++++.++
T Consensus       232 ~~L~s~~a~~itG~~i~vdGG  252 (280)
T 3tox_A          232 LYLASDGASFVTGAALLADGG  252 (280)
T ss_dssp             HHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHhCccccCCcCcEEEECCC
Confidence            76665432  45777887764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.95  E-value=2.5e-27  Score=203.43  Aligned_cols=203  Identities=12%  Similarity=0.065  Sum_probs=149.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDS  136 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~~  136 (301)
                      +++|++|||||+||||++++++|+++|++|++++|+.++ ++...... . .++.+|++| .+++.+++.       + +
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~-~-~~~~~D~~~-~~~~~~~~~~~~~~~g~-i   78 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG-G-AFFQVDLED-ERERVRFVEEAAYALGR-V   78 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT-C-EEEECCTTC-HHHHHHHHHHHHHHHSC-C
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh-C-CEEEeeCCC-HHHHHHHHHHHHHHcCC-C
Confidence            568999999999999999999999999999999999876 44332122 4 889999999 766665543       5 9


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++|+..+++|+.|++++++++.    +.+.++||++||...+...            ...
T Consensus        79 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------~~~  146 (256)
T 2d1y_A           79 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE------------QEN  146 (256)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC------------TTB
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCC------------CCC
Confidence            999999996542        1345678999999999999874    3456899999998754211            224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc---------eee-ccccccccCCCCHHHHHHHHHHH
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN---------IIM-ETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~---------~~~-~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ..|+.+|.+.+.+.+       ..|+++++|+||.+.+++....         ... .........+.+++|+|++++.+
T Consensus       147 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l  226 (256)
T 2d1y_A          147 AAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFL  226 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            679999999987654       3589999999999998753211         000 00011223478999999999877


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..++++++.++
T Consensus       227 ~s~~~~~~~G~~~~v~gG  244 (256)
T 2d1y_A          227 ASEKASFITGAILPVDGG  244 (256)
T ss_dssp             HSGGGTTCCSCEEEESTT
T ss_pred             hCchhcCCCCCEEEECCC
Confidence            75432  35778888774

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.95  E-value=1.1e-27  Score=203.05  Aligned_cols=194  Identities=15%  Similarity=0.107  Sum_probs=142.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      |++|++|||||+||||++++++|+++|++|++++|+.+++++.......++.++.+|++| .+++.+.+..      ++|
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id   79 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAH-HEDVDVAFAAAVEWGGLPE   79 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTS-HHHHHHHHHHHHHHHCSCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHhcCCCc
Confidence            357899999999999999999999999999999999877665443223468999999999 7666655532      399


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      +||||||....        ++|+..+++|+.|++++++++...   ..++||++||...+...            .....
T Consensus        80 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~~  147 (235)
T 3l6e_A           80 LVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGK------------ANESL  147 (235)
T ss_dssp             EEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSC------------SSHHH
T ss_pred             EEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCC------------CCCcH
Confidence            99999997432        245667899999999999998432   22499999998744221            22467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      |+.+|.+.+.+.+       ..|++++.|+||.+.+++......     .....+.+++|+|++++.++.++...+
T Consensus       148 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-----~~~~~~~~pedvA~~v~~l~~~~~~~~  218 (235)
T 3l6e_A          148 YCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDH-----VDPSGFMTPEDAAAYMLDALEARSSCH  218 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------CBCHHHHHHHHHHHTCCCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCC-----CCCcCCCCHHHHHHHHHHHHhCCCCcc
Confidence            9999999987654       358999999999999987543211     112257899999999988887665433

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.95  E-value=1.5e-27  Score=204.76  Aligned_cols=206  Identities=15%  Similarity=0.085  Sum_probs=150.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-hhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+.+.. .+.......++.++.+|++| .+++.+++.       + 
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~-   79 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSD-VAQIEALFALAEREFGG-   79 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTS-HHHHHHHHHHHHHHHSS-
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCC-HHHHHHHHHHHHHHcCC-
Confidence            4689999999999999999999999999999999987521 11111134578899999999 777777665       6 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...            ..
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~  147 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGS------------TG  147 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC------------TT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCC------------CC
Confidence            9999999996532        235567899999988887776    45667899999998765321            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce----ee--------c---cccccccCCCCHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI----IM--------E---TEDTLYEGTISRDQVA  261 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~----~~--------~---~~~~~~~~~v~~~Dva  261 (301)
                      ...|..+|.+.+.+.+       ..|+++++|+||++.|++.....    ..        .   ........+.+++|+|
T Consensus       148 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA  227 (255)
T 2q2v_A          148 KAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLG  227 (255)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTTCTTCCCBCHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhccCCCCCCcCHHHHH
Confidence            4678899999887654       25899999999999998632210    00        0   1111223478999999


Q ss_pred             HHHHHHhcCCC--CCCcEEEeecC
Q 022216          262 EVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       262 ~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++++.++..+.  ..++++++.++
T Consensus       228 ~~~~~l~s~~~~~~tG~~~~vdgG  251 (255)
T 2q2v_A          228 ELVLFLCSEAGSQVRGAAWNVDGG  251 (255)
T ss_dssp             HHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHhCCccCCCCCCEEEECCC
Confidence            99977665432  34778887764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.95  E-value=1.4e-27  Score=207.61  Aligned_cols=208  Identities=15%  Similarity=0.155  Sum_probs=150.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      .+++|++|||||+||||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+++..     
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS-TDEVHAAVAAAVERF   99 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            3468999999999999999999999999999999998876554332   235689999999999 7666655531     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH------cCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK------RGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~------~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                       ++|+||||||....        ++|+..+++|+.|++++++++.+      .+.++||++||...+...          
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~----------  169 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGV----------  169 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCC----------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCC----------
Confidence             39999999997542        23556788999999999998754      456799999998754221          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---------------eccccccccCCCCH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---------------METEDTLYEGTISR  257 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---------------~~~~~~~~~~~v~~  257 (301)
                        .....|+.+|.+.+.+.+       ..|++++.|+||++.|++......               ..........+.++
T Consensus       170 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p  247 (279)
T 3sju_A          170 --MYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTP  247 (279)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCTTSSCBCH
T ss_pred             --CCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCCH
Confidence              224678999998886653       368999999999999875322100               00011122346799


Q ss_pred             HHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          258 DQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       258 ~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +|+|++++.++....  ..|+++++.++
T Consensus       248 edvA~~v~~L~s~~a~~itG~~i~vdGG  275 (279)
T 3sju_A          248 EEVAGLVGYLVTDAAASITAQALNVCGG  275 (279)
T ss_dssp             HHHHHHHHHHTSSGGGGCCSCEEEESTT
T ss_pred             HHHHHHHHHHhCccccCcCCcEEEECCC
Confidence            999999965554332  45777887764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.95  E-value=1.9e-27  Score=205.45  Aligned_cols=208  Identities=17%  Similarity=0.183  Sum_probs=152.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhc----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+++++....    ...++.++.+|++| .+++.+++.    
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~   95 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKE   95 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999987665543211    24578899999999 766665554    


Q ss_pred             ---CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccc-cccccCCCCCCcc
Q 022216          134 ---DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSIL-VNGAAMGQILNPA  197 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~-~~~~~~~~~~~~~  197 (301)
                         + +|+||||||+...        ++|+..+++|+.|++++++++.    +.+.++||++||.. .+..         
T Consensus        96 ~~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------  165 (267)
T 1vl8_A           96 KFGK-LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVT---------  165 (267)
T ss_dssp             HHSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCC---------
T ss_pred             HcCC-CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccC---------
Confidence               5 9999999997542        2345678899999999998873    34568999999986 2211         


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~  264 (301)
                         ......|..+|.+.+.+.+       ..|+++++|+||++.|++.........      .......+.+++|+|+++
T Consensus       166 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v  242 (267)
T 1vl8_A          166 ---MPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVA  242 (267)
T ss_dssp             ---SSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHH
T ss_pred             ---CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhCCCCCCcCHHHHHHHH
Confidence               1224678999999987664       259999999999999987432110000      011123478999999999


Q ss_pred             HHHhcCCC--CCCcEEEeecC
Q 022216          265 VEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +.++..+.  ..++++.+.++
T Consensus       243 ~~l~s~~~~~itG~~i~vdGG  263 (267)
T 1vl8_A          243 VFLASEEAKYVTGQIIFVDGG  263 (267)
T ss_dssp             HHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHcCccccCCcCCeEEECCC
Confidence            77765432  35677777653

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.95  E-value=5.7e-28  Score=209.03  Aligned_cols=208  Identities=14%  Similarity=0.073  Sum_probs=153.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+++.     
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND-ATAVDALVESTLKE  102 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC-HHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999998776554322   134578899999999 766665554     


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        . +|+||||||+...        ++|+..+++|+.|++++++++.    +.+.++||++||...+..           
T Consensus       103 ~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  170 (270)
T 3ftp_A          103 FGA-LNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAG-----------  170 (270)
T ss_dssp             HSC-CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC-----------
T ss_pred             cCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCC-----------
Confidence              5 9999999997542        2455678999999999999874    345579999999875422           


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----eccccccccCCCCHHHHHHHHHHHh
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----METEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       ......|+.+|.+.+.+.+       ..|+++++|+||++.+++......    ..........+.+++|+|++++.++
T Consensus       171 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~  249 (270)
T 3ftp_A          171 -NPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPLGRLGSPEDIAHAVAFLA  249 (270)
T ss_dssp             -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHH
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Confidence             1235779999998886553       368999999999999875322110    0011112234679999999996666


Q ss_pred             cCC--CCCCcEEEeecC
Q 022216          269 LHP--ESSYKVVEIISR  283 (301)
Q Consensus       269 ~~~--~~~~~~~~v~~~  283 (301)
                      ...  ...|+++++.++
T Consensus       250 s~~~~~itG~~i~vdGG  266 (270)
T 3ftp_A          250 SPQAGYITGTTLHVNGG  266 (270)
T ss_dssp             SGGGTTCCSCEEEESTT
T ss_pred             CCCcCCccCcEEEECCC
Confidence            322  235778888764

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.95  E-value=2e-27  Score=205.77  Aligned_cols=198  Identities=16%  Similarity=0.086  Sum_probs=140.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      .+++|++|||||+||||++++++|+++|++|++++|+.+++++...+...++.++.+|++| .+++.+++.       + 
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~-  102 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTD-PDSVRALFTATVEKFGR-  102 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTS-HHHHHHHHHHHHHHHSC-
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCC-HHHHHHHHHHHHHHcCC-
Confidence            3468999999999999999999999999999999999887766554344688999999999 766666554       5 


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcC--CCEEEEecccccccccCCCCCCcchhh
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRG--VNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      +|+||||||....         ++|+..+++|+.|++++++++.    +.+  .++||++||...+..            
T Consensus       103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~------------  170 (272)
T 4dyv_A          103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP------------  170 (272)
T ss_dssp             CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSC------------
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCC------------
Confidence            9999999997432         2355678999999999998873    333  469999999875422            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---ccccccccCCCCHHHHHHHHHHHhcC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---ETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ......|+.+|.+.+.+.+       ..|++++.|+||.+.+++.......   .........+.+++|+|++++.++..
T Consensus       171 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~fL~s~  250 (272)
T 4dyv_A          171 RPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMASL  250 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------------CHHHHHHHHHHHHHS
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcccchhhhhcccccCCCCHHHHHHHHHHHhCC
Confidence            1234678999999887653       3689999999999999865432110   01111223478999999999888877


Q ss_pred             CCCC
Q 022216          271 PESS  274 (301)
Q Consensus       271 ~~~~  274 (301)
                      +...
T Consensus       251 ~~~~  254 (272)
T 4dyv_A          251 PLDA  254 (272)
T ss_dssp             CTTS
T ss_pred             CCcC
Confidence            6643

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.95  E-value=9.4e-28  Score=205.96  Aligned_cols=200  Identities=18%  Similarity=0.200  Sum_probs=142.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-------hcC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGD  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~  134 (301)
                      ++++||++|||||+++||++++++|+++|++|++.+|+..+.       .....++++|++| .+++.+.       ++.
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~   78 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG-------LPEELFVEADLTT-KEGCAIVAEATRQRLGG   78 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT-------SCTTTEEECCTTS-HHHHHHHHHHHHHHTSS
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC-------CCcEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence            478899999999999999999999999999999999975431       1334578999999 6554443       455


Q ss_pred             CCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       +|++|||||....          ++|+..+++|+.+++++++++    ++.+.++||++||....-   +.+       
T Consensus        79 -iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~---~~~-------  147 (261)
T 4h15_A           79 -VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVL---PLP-------  147 (261)
T ss_dssp             -CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---CCT-------
T ss_pred             -CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhcc---CCC-------
Confidence             9999999996421          346678899999999998887    445668999999986321   111       


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----------------ec-cccccccCCC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----------------ME-TEDTLYEGTI  255 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----------------~~-~~~~~~~~~v  255 (301)
                       .....|..+|.+.+.+.+       .+||++|.|.||++.|++......                 .. ....+...+.
T Consensus       148 -~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g  226 (261)
T 4h15_A          148 -ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPLGRPA  226 (261)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTTSSCB
T ss_pred             -CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCCCCCc
Confidence             113567788888875543       479999999999999975321100                 00 0111223466


Q ss_pred             CHHHHHHHHHHHhcCCCCCC---cEEEeec
Q 022216          256 SRDQVAEVAVEALLHPESSY---KVVEIIS  282 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~~~~~---~~~~v~~  282 (301)
                      .++|+|+++ .+|.++.+.+   +++.+.+
T Consensus       227 ~peevA~~v-~fLaS~~a~~itG~~i~VDG  255 (261)
T 4h15_A          227 KPEEVANLI-AFLASDRAASITGAEYTIDG  255 (261)
T ss_dssp             CHHHHHHHH-HHHHSGGGTTCCSCEEEEST
T ss_pred             CHHHHHHHH-HHHhCchhcCccCcEEEECC
Confidence            899999998 4566666544   4555544

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.95  E-value=1e-27  Score=207.80  Aligned_cols=207  Identities=16%  Similarity=0.104  Sum_probs=151.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc---cccCCCCeEEEEccCCCChHhHHHHh------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAI------  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~------  132 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+. ..++.   ......++.++.+|++| .+++.+..      
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  104 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-GVKEVADEIADGGGSAEAVVADLAD-LEGAANVAEELAAT  104 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHhc
Confidence            467899999999999999999999999999999999764 22222   12245678999999999 66655543      


Q ss_pred             cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          133 GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      ++ +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...           
T Consensus       105 g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~-----------  172 (273)
T 3uf0_A          105 RR-VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGG-----------  172 (273)
T ss_dssp             SC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred             CC-CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCC-----------
Confidence            35 9999999997543        245667899999999999987    44566899999998755321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                       .....|+.+|.+.+.+.+       ..||+++.|+||++.|++........      ........+.+++|+|++++.+
T Consensus       173 -~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L  251 (273)
T 3uf0_A          173 -RNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAVFL  251 (273)
T ss_dssp             -SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTTSSCBCGGGGHHHHHHH
T ss_pred             -CCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence             224678999999886653       36899999999999998643211000      0011223468999999999766


Q ss_pred             hcCC--CCCCcEEEeecC
Q 022216          268 LLHP--ESSYKVVEIISR  283 (301)
Q Consensus       268 l~~~--~~~~~~~~v~~~  283 (301)
                      +...  ...|+++++.++
T Consensus       252 ~s~~a~~itG~~i~vdGG  269 (273)
T 3uf0_A          252 ASDAASYVHGQVLAVDGG  269 (273)
T ss_dssp             HSGGGTTCCSCEEEESTT
T ss_pred             hCchhcCCcCCEEEECcC
Confidence            6432  245777777764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.95  E-value=1.4e-28  Score=213.66  Aligned_cols=207  Identities=14%  Similarity=0.120  Sum_probs=151.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      .+++|++|||||+||||++++++|+++|++|++++|+.++.++...+    ...++.++.+|++| .+++.+++.     
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA-PPAVMAAVDQALKE  102 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999997665443221    24678999999999 766665553     


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        . +|+||||||....        ++|+..+++|+.|++++++++.    +.+.++||++||...+..           
T Consensus       103 ~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  170 (277)
T 4fc7_A          103 FGR-IDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRG-----------  170 (277)
T ss_dssp             HSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHT-----------
T ss_pred             cCC-CCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCC-----------
Confidence              5 9999999996432        2456678999999999999983    334579999999875422           


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------eccccccccCCCCHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------METEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                       ......|+.+|.+.+.+.+       ..||+++.|+||++.+++......       ..........+.+++|+|++++
T Consensus       171 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~  249 (277)
T 4fc7_A          171 -QALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVL  249 (277)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTTSSCBCHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCCCCCcCHHHHHHHHH
Confidence             1224678899999886653       358999999999999874211110       0001122234679999999996


Q ss_pred             HHhcCCC--CCCcEEEeecC
Q 022216          266 EALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~~  283 (301)
                      .++....  ..|+++++.++
T Consensus       250 fL~s~~~~~itG~~i~vdGG  269 (277)
T 4fc7_A          250 YLASPLASYVTGAVLVADGG  269 (277)
T ss_dssp             HHHSGGGTTCCSCEEEESTT
T ss_pred             HHcCCccCCcCCCEEEECCC
Confidence            6554322  35667777653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.95  E-value=1.9e-27  Score=202.97  Aligned_cols=206  Identities=16%  Similarity=0.109  Sum_probs=149.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      +++|++|||||+|+||++++++|+++|++|++++| +.++.++...   ....++.++.+|++| .+++.+.+.      
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   80 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN-AEDVTNMVKQTVDVF   80 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999 6554443221   134578899999999 776666554      


Q ss_pred             -CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          134 -DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       + +|+||||||....        ++|+..+++|+.|++++++++.    +.+.++||++||...+...           
T Consensus        81 g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  148 (246)
T 2uvd_A           81 GQ-VDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGN-----------  148 (246)
T ss_dssp             SC-CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------
T ss_pred             CC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCC-----------
Confidence             5 9999999997532        2355678999999888887763    4566899999998654211           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHHhc
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                       .....|..+|.+.+.+.+       ..|+++++|+||++.+++.......   . ........+.+++|+|++++.++.
T Consensus       149 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s  227 (246)
T 2uvd_A          149 -PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQDIANAVTFFAS  227 (246)
T ss_dssp             -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHTCTTCSCBCHHHHHHHHHHHHS
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC
Confidence             124678899998876543       3689999999999999864431100   0 001112347899999999977764


Q ss_pred             CCC--CCCcEEEeecC
Q 022216          270 HPE--SSYKVVEIISR  283 (301)
Q Consensus       270 ~~~--~~~~~~~v~~~  283 (301)
                      .+.  ..++++++.++
T Consensus       228 ~~~~~~tG~~~~vdgG  243 (246)
T 2uvd_A          228 DQSKYITGQTLNVDGG  243 (246)
T ss_dssp             GGGTTCCSCEEEESTT
T ss_pred             chhcCCCCCEEEECcC
Confidence            332  35677777664

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.95  E-value=1e-27  Score=206.79  Aligned_cols=207  Identities=13%  Similarity=0.197  Sum_probs=152.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+.+..     
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD-DAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999999999998876654332   245689999999999 7666665541     


Q ss_pred             -CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||....         ++|+..+++|+.+++++++++.    +.+ ++||++||...+...           
T Consensus        87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-----------  154 (264)
T 3ucx_A           87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQ-----------  154 (264)
T ss_dssp             SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCC-----------
T ss_pred             CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCC-----------
Confidence             39999999987421         2456678999999999999873    334 799999998754321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---------------eccccccccCCCCHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---------------METEDTLYEGTISRD  258 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---------------~~~~~~~~~~~v~~~  258 (301)
                       ..+..|..+|.+.+.+.+       ..|++++.|+||++.|++......               ..........+.+++
T Consensus       155 -~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~  233 (264)
T 3ucx_A          155 -AKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTED  233 (264)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSSSSSCCBHH
T ss_pred             -CccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccCCcccCCCHH
Confidence             224678999999886653       368999999999999985332110               000112223477999


Q ss_pred             HHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          259 QVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       259 Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      |+|++++.++....  ..++++++.++
T Consensus       234 dvA~~v~~L~s~~~~~itG~~i~vdGG  260 (264)
T 3ucx_A          234 EVASAILFMASDLASGITGQALDVNCG  260 (264)
T ss_dssp             HHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHcCccccCCCCCEEEECCC
Confidence            99999976654322  35677777664

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.95  E-value=1.8e-27  Score=208.76  Aligned_cols=214  Identities=16%  Similarity=0.155  Sum_probs=155.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCC---CeEEEEccCCCChHhHHHHhc---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNP---SLQIVKADVTEGSAKLSEAIG---  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~---~~~~~~~Dl~~~~~~~~~~~~---  133 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+++++...+   ...   ++.++.+|++| .+++.+++.   
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~  101 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTL  101 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC-HHHHHHHHHHHH
Confidence            46789999999999999999999999999999999987765543221   223   78999999999 766666554   


Q ss_pred             ----CCCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCC
Q 022216          134 ----DDSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILN  195 (301)
Q Consensus       134 ----~~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~  195 (301)
                          + +|+||||||....          ++|+..+++|+.|++++++++.+    .+ ++||++||...+...      
T Consensus       102 ~~~g~-iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~------  173 (297)
T 1xhl_A          102 AKFGK-IDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA------  173 (297)
T ss_dssp             HHHSC-CCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC------
T ss_pred             HhcCC-CCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC------
Confidence                5 9999999996432          13456789999999999998843    45 799999998755321      


Q ss_pred             cchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce------------eec-cccccccCCC
Q 022216          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI------------IME-TEDTLYEGTI  255 (301)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~------------~~~-~~~~~~~~~v  255 (301)
                           ......|+.+|.+.+.+.+       ..|+++++|+||++.|++.....            ... ........+.
T Consensus       174 -----~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~  248 (297)
T 1xhl_A          174 -----HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCG  248 (297)
T ss_dssp             -----CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCB
T ss_pred             -----CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcCCCCCCc
Confidence                 0124678999999886653       36999999999999998632210            000 0011123468


Q ss_pred             CHHHHHHHHHHHhcCC---CCCCcEEEeecCCCCCCcCHHH
Q 022216          256 SRDQVAEVAVEALLHP---ESSYKVVEIISRVDAPKRSYED  293 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~---~~~~~~~~v~~~~~~~~~s~~e  293 (301)
                      +++|+|++++.++..+   ...++++++.++   ....+.+
T Consensus       249 ~pedvA~~v~~l~s~~~~~~itG~~i~vdGG---~~~~~~~  286 (297)
T 1xhl_A          249 KPEEIANIIVFLADRNLSSYIIGQSIVADGG---STLVMGM  286 (297)
T ss_dssp             CHHHHHHHHHHHHCHHHHTTCCSCEEEESTT---GGGCCGG
T ss_pred             CHHHHHHHHHHHhCCcccCCccCcEEEECCC---ccccccc
Confidence            9999999997776543   245777887764   5555555

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.95  E-value=1.3e-27  Score=204.74  Aligned_cols=210  Identities=15%  Similarity=0.089  Sum_probs=152.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCe-EEEEccCCCChHhHHHHh------cC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSL-QIVKADVTEGSAKLSEAI------GD  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~------~~  134 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.++.++...+...++ .++.+|++| .+++.+++      ++
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   85 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTD-AEAMTAAAAEAEAVAP   85 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC-HHHHHHHHHHHHHHSC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCC-HHHHHHHHHHHHhhCC
Confidence            45678999999999999999999999999999999998776554432223456 889999999 77777665      46


Q ss_pred             CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||.....        +++..+++|+.|++++++++    ++.+.++||++||...+.....          .
T Consensus        86 -id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------~  154 (254)
T 2wsb_A           86 -VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRP----------Q  154 (254)
T ss_dssp             -CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS----------S
T ss_pred             -CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCC----------C
Confidence             99999999975421        23456789999988888776    4456789999999876542211          1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----eec-cccccccCCCCHHHHHHHHHHHhc
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----IME-TEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~~~-~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      +...|+.+|.+.+.+.+       ..|+++++|+||+++|++.....     ... ........+.+++|+|++++.++.
T Consensus       155 ~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~  234 (254)
T 2wsb_A          155 FASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALFLAS  234 (254)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Confidence            23679999999987664       24899999999999998532110     000 001112347899999999987775


Q ss_pred             CCC--CCCcEEEeecC
Q 022216          270 HPE--SSYKVVEIISR  283 (301)
Q Consensus       270 ~~~--~~~~~~~v~~~  283 (301)
                      .+.  ..++++++.++
T Consensus       235 ~~~~~~~G~~~~v~gG  250 (254)
T 2wsb_A          235 PAASYVTGAILAVDGG  250 (254)
T ss_dssp             GGGTTCCSCEEEESTT
T ss_pred             cccccccCCEEEECCC
Confidence            432  35778887663

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.95  E-value=5.4e-27  Score=202.02  Aligned_cols=202  Identities=18%  Similarity=0.186  Sum_probs=143.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      ++++|+||||||+|+||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++..     
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH-SDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999999999877654332   245678999999999 7666655432     


Q ss_pred             -CCCEEEEccCCCC-C--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 -DSEAVVCATGFQP-G--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~-~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       ++|+||||||... .        ++++..+++|+.|++++++++.    +.+.++||++||...+..            
T Consensus       105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------  172 (262)
T 3rkr_A          105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNP------------  172 (262)
T ss_dssp             SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCC------------
T ss_pred             CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCC------------
Confidence             3999999999732 1        2355678999999999999873    456689999999875422            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      ......|+.+|.+.+.+.+       ..|+++++|+||.+.+++......    ......+++++|+|++++.++..+. 
T Consensus       173 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~~~~~~~p~dvA~~v~~l~s~~~-  247 (262)
T 3rkr_A          173 VADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLSA----KKSALGAIEPDDIADVVALLATQAD-  247 (262)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------------CCCHHHHHHHHHHHHTCCT-
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccccccc----ccccccCCCHHHHHHHHHHHhcCcc-
Confidence            1234778999998886653       368999999999999987543211    1122357899999999976665443 


Q ss_pred             CCcEEEeec
Q 022216          274 SYKVVEIIS  282 (301)
Q Consensus       274 ~~~~~~v~~  282 (301)
                      ...+.++.-
T Consensus       248 ~~~~g~~~i  256 (262)
T 3rkr_A          248 QSFISEVLV  256 (262)
T ss_dssp             TCCEEEEEE
T ss_pred             ccccCcEEe
Confidence            444554443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.95  E-value=1.2e-27  Score=209.47  Aligned_cols=208  Identities=15%  Similarity=0.148  Sum_probs=150.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc--hhhh---ccccCCCCeEEEEccCCCChHhHHHHh----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD--KAKT---TLSKDNPSLQIVKADVTEGSAKLSEAI----  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~--~~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~----  132 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+  ..++   .......++.++.+|++| .+++.+++    
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~  123 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSD-ESFARSLVHKAR  123 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTS-HHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHH
Confidence            4568999999999999999999999999999999888733  2221   222245688999999999 76665554    


Q ss_pred             ---cCCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcch
Q 022216          133 ---GDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 ---~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         ++ +|+||||||....         ++|+..+++|+.|++++++++...-  .++||++||...+...         
T Consensus       124 ~~~g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~---------  193 (294)
T 3r3s_A          124 EALGG-LDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS---------  193 (294)
T ss_dssp             HHHTC-CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC---------
T ss_pred             HHcCC-CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC---------
Confidence               45 9999999996431         2356678999999999999996653  2599999999865422         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCC-----cee-eccccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTG-----NII-METEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~-----~~~-~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                         .....|..+|.+.+.+.+       ..|++++.|+||++.|++...     ... ..........+.+++|+|++++
T Consensus       194 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~  270 (294)
T 3r3s_A          194 ---PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYV  270 (294)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTTTTTSTTSSCBCGGGGHHHHH
T ss_pred             ---CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence               224678999999887653       359999999999999975211     100 0011122234678999999997


Q ss_pred             HHhcCCC--CCCcEEEeecC
Q 022216          266 EALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~~  283 (301)
                      .++....  ..|+++++.++
T Consensus       271 ~L~s~~~~~itG~~i~vdGG  290 (294)
T 3r3s_A          271 YLASQESSYVTAEVHGVCGG  290 (294)
T ss_dssp             HHHSGGGTTCCSCEEEESTT
T ss_pred             HHhCccccCCCCCEEEECCC
Confidence            6554322  35677777664

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.95  E-value=1.9e-27  Score=205.62  Aligned_cols=201  Identities=16%  Similarity=0.089  Sum_probs=148.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      ..+++|+||||||+||||++++++|+++|++|++++|+.+...       ..+..+.+|++| .+++.+++.       .
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-------~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~   81 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV-------NVSDHFKIDVTN-EEEVKEAVEKTTKKYGR   81 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT-------TSSEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc-------CceeEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence            4567999999999999999999999999999999999876532       367789999999 766666554       5


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||+...        ++|+..+++|+.|++++++++.    +.+.++||++||...|...            .
T Consensus        82 -iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  148 (269)
T 3vtz_A           82 -IDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAAT------------K  148 (269)
T ss_dssp             -CCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC------------T
T ss_pred             -CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC------------C
Confidence             9999999997542        2355678899999999999874    3466799999999865422            2


Q ss_pred             hhhHHHHHHHHHHHHHH----H--cCCcEEEEecCcccCCCCCCcee---------------eccccccccCCCCHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR----K--SGINYTIIRPGGLRNEPPTGNII---------------METEDTLYEGTISRDQVA  261 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~----~--~~i~~~~irpg~v~~~~~~~~~~---------------~~~~~~~~~~~v~~~Dva  261 (301)
                      ....|+.+|.+.+.+.+    +  .+++++.|+||++.|++......               ..........+.+++|+|
T Consensus       149 ~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA  228 (269)
T 3vtz_A          149 NAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVA  228 (269)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHSTTSSCBCHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCCCCCCcCHHHHH
Confidence            24789999999987664    2  28999999999999975322110               000011223467999999


Q ss_pred             HHHHHHhcCCC--CCCcEEEeecC
Q 022216          262 EVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       262 ~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++++.++....  ..|+++++.++
T Consensus       229 ~~v~~L~s~~~~~itG~~i~vdGG  252 (269)
T 3vtz_A          229 EVVAFLASDRSSFITGACLTVDGG  252 (269)
T ss_dssp             HHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHhCCccCCCcCcEEEECCC
Confidence            99976664332  45777887764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.95  E-value=5.4e-27  Score=203.96  Aligned_cols=207  Identities=15%  Similarity=0.107  Sum_probs=141.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      .+++|++|||||+||||++++++|+++|++|++++| +.+..++..   .....++.++++|++| .+++.+++.     
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~  104 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD-LSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS-GGGHHHHHHHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999986 444333322   1245689999999999 666655554     


Q ss_pred             --CCCCEEEEccCCC--C--------CCCCCCceeeehHHHHHHHHHHHH----cC---CCEEEEecccccccccCCCCC
Q 022216          134 --DDSEAVVCATGFQ--P--------GWDLFAPWKVDNFGTVNLVEACRK----RG---VNRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~--~--------~~~~~~~~~~N~~g~~~l~~a~~~----~~---~~~iV~~SS~~~~~~~~~~~~  194 (301)
                        . +|+||||||..  .        .++|+..+++|+.|++++++++.+    .+   .++||++||...+..      
T Consensus       105 ~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~------  177 (280)
T 4da9_A          105 FGR-IDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMT------  177 (280)
T ss_dssp             HSC-CCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----------
T ss_pred             cCC-CCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccC------
Confidence              5 99999999973  1        134667889999999999998743    22   469999999875421      


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccc-cccccCCCCHHHHHH
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETE-DTLYEGTISRDQVAE  262 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~-~~~~~~~v~~~Dva~  262 (301)
                            ......|+.+|.+.+.+.+       ..|++++.|+||++.+++.......    ... ......+.+++|+|+
T Consensus       178 ------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~  251 (280)
T 4da9_A          178 ------SPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPMRRWGEPEDIGN  251 (280)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------CCBCHHHHHH
T ss_pred             ------CCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHHHHHhhcCCCcCCcCCHHHHHH
Confidence                  1224678999999887653       2689999999999999865432110    000 122234678999999


Q ss_pred             HHHHHhcCCC--CCCcEEEeecC
Q 022216          263 VAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       263 ~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++.++....  ..|+++++.++
T Consensus       252 ~v~~L~s~~~~~itG~~i~vdGG  274 (280)
T 4da9_A          252 IVAGLAGGQFGFATGSVIQADGG  274 (280)
T ss_dssp             HHHHHHTSTTGGGTTCEEEESTT
T ss_pred             HHHHHhCccccCCCCCEEEECCC
Confidence            9966664433  45778888764

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.95  E-value=6.6e-27  Score=204.00  Aligned_cols=206  Identities=19%  Similarity=0.128  Sum_probs=149.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC----------------chhhhc---cccCCCCeEEEEccCCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL----------------DKAKTT---LSKDNPSLQIVKADVTE  123 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~----------------~~~~~~---~~~~~~~~~~~~~Dl~~  123 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.                +.+++.   ......++.++.+|++|
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   87 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD   87 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence            46789999999999999999999999999999999873                222221   11245689999999999


Q ss_pred             ChHhHHHHhc-------CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecc
Q 022216          124 GSAKLSEAIG-------DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISS  182 (301)
Q Consensus       124 ~~~~~~~~~~-------~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS  182 (301)
                       .+++.+++.       . +|+||||||+...         ++|+.++++|+.|++++++++..    .+ .++||++||
T Consensus        88 -~~~v~~~~~~~~~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (286)
T 3uve_A           88 -YDALKAAVDSGVEQLGR-LDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS  165 (286)
T ss_dssp             -HHHHHHHHHHHHHHHSC-CCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             -HHHHHHHHHHHHHHhCC-CCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence             766666554       5 9999999997432         23556789999999999998743    23 469999999


Q ss_pred             cccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---------ec-
Q 022216          183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---------ME-  245 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---------~~-  245 (301)
                      ...+...            .....|..+|.+.+.+.+       ..||+++.|+||++.|++......         .. 
T Consensus       166 ~~~~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~  233 (286)
T 3uve_A          166 VGGLKAY------------PHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPG  233 (286)
T ss_dssp             GGGTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCC
T ss_pred             hhhccCC------------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccc
Confidence            8754321            224678899998886653       368999999999999997653100         00 


Q ss_pred             ---------cccccccCCCCHHHHHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          246 ---------TEDTLYEGTISRDQVAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       246 ---------~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                               ........+.+++|+|++++.++ ++.   ..|+++++.++
T Consensus       234 ~~~~~~~~~~~~~~p~r~~~p~dvA~~v~fL~-s~~a~~itG~~i~vdGG  282 (286)
T 3uve_A          234 PDDMAPICQMFHTLPIPWVEPIDISNAVLFFA-SDEARYITGVTLPIDAG  282 (286)
T ss_dssp             HHHHHHHHHTTCSSSCSCBCHHHHHHHHHHHH-SGGGTTCCSCEEEESTT
T ss_pred             hhhHHHHHHhhhccCCCcCCHHHHHHHHHHHc-CccccCCcCCEEeECCc
Confidence                     01111145789999999996655 443   34667777664

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.95  E-value=1.5e-27  Score=205.94  Aligned_cols=207  Identities=16%  Similarity=0.138  Sum_probs=150.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHh----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAI----  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~----  132 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.++.++...+     ...++.++.+|++| .+++.+.+    
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~   82 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD-ALQVRAFAEACE   82 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC-HHHHHHHHHHHH
Confidence            456799999999999999999999999999999999998765543321     23458999999999 76665554    


Q ss_pred             ---cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcc
Q 022216          133 ---GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       133 ---~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                         +. +|+||||||+...        ++|+..+++|+.+++++++++..    .+.++||++||...+...        
T Consensus        83 ~~~g~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------  153 (265)
T 3lf2_A           83 RTLGC-ASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE--------  153 (265)
T ss_dssp             HHHCS-CSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC--------
T ss_pred             HHcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC--------
Confidence               45 9999999997542        23556789999999999999843    345799999998754221        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee------c----------cccccccCC
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM------E----------TEDTLYEGT  254 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~------~----------~~~~~~~~~  254 (301)
                          .....|..+|.+.+.+.+       ..||+++.|+||++.|++.......      .          ........+
T Consensus       154 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~  229 (265)
T 3lf2_A          154 ----PHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRL  229 (265)
T ss_dssp             ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCTTCSC
T ss_pred             ----CCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCCcCCC
Confidence                224778999999887653       3589999999999999753221100      0          000222346


Q ss_pred             CCHHHHHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          255 ISRDQVAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       255 v~~~Dva~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      .+++|+|++++.++ ++.   ..|+++++.++
T Consensus       230 ~~pedvA~~v~fL~-s~~~~~itG~~i~vdGG  260 (265)
T 3lf2_A          230 GKPIEAARAILFLA-SPLSAYTTGSHIDVSGG  260 (265)
T ss_dssp             BCHHHHHHHHHHHH-SGGGTTCCSEEEEESSS
T ss_pred             cCHHHHHHHHHHHh-CchhcCcCCCEEEECCC
Confidence            79999999996555 443   34666666654

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.95  E-value=1.2e-27  Score=204.12  Aligned_cols=205  Identities=15%  Similarity=0.110  Sum_probs=152.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH---hcCCCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA---IGDDSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~~~~d~Vi  140 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+++++++.. +. .++.++.+|++| .+++.++   +++ +|+||
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~-~~~~~~~~D~~~-~~~~~~~~~~~~~-id~lv   79 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY-PGIQTRVLDVTK-KKQIDQFANEVER-LDVLF   79 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS-TTEEEEECCTTC-HHHHHHHHHHCSC-CSEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc-cCceEEEeeCCC-HHHHHHHHHHhCC-CCEEE
Confidence            56899999999999999999999999999999999887766554 22 378999999999 7777655   445 99999


Q ss_pred             EccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       141 ~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      ||||....        ++|+..+++|+.+++++++++.    +.+.++||++||...+....           .....|+
T Consensus        80 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-----------~~~~~Y~  148 (246)
T 2ag5_A           80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV-----------VNRCVYS  148 (246)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC-----------TTBHHHH
T ss_pred             ECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCC-----------CCCccHH
Confidence            99997542        2455678999999999999874    34668999999987543211           1246799


Q ss_pred             HHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee--------ec--cccccccCCCCHHHHHHHHHHHhcCC
Q 022216          209 IAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII--------ME--TEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       209 ~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~--------~~--~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      .+|.+.+.+.+       ..|+++++|+||+++|++......        ..  ........+.+++|+|++++.++..+
T Consensus       149 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~  228 (246)
T 2ag5_A          149 TTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDE  228 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcc
Confidence            99999987664       259999999999999985322110        00  00011234678999999997776543


Q ss_pred             C--CCCcEEEeecC
Q 022216          272 E--SSYKVVEIISR  283 (301)
Q Consensus       272 ~--~~~~~~~v~~~  283 (301)
                      .  ..++++++.++
T Consensus       229 ~~~~tG~~i~vdgG  242 (246)
T 2ag5_A          229 SAYVTGNPVIIDGG  242 (246)
T ss_dssp             GTTCCSCEEEECTT
T ss_pred             ccCCCCCEEEECCC
Confidence            2  35777777663

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.95  E-value=3.4e-28  Score=201.84  Aligned_cols=182  Identities=14%  Similarity=0.145  Sum_probs=143.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc---CCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG---DDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~d~Vi~~A  143 (301)
                      |++|||||+|+||++++++|+++  +|++++|++++.++...... . .++.+|++| .+++.+.+.   + +|+|||||
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~-~-~~~~~D~~~-~~~~~~~~~~~~~-id~vi~~a   74 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG-A-RALPADLAD-ELEAKALLEEAGP-LDLLVHAV   74 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT-C-EECCCCTTS-HHHHHHHHHHHCS-EEEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc-C-cEEEeeCCC-HHHHHHHHHhcCC-CCEEEECC
Confidence            58999999999999999999998  99999998776655432111 2 888999999 888888887   6 99999999


Q ss_pred             CCCCC--------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH
Q 022216          144 GFQPG--------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       144 g~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (301)
                      |....        +++...+++|+.++.++++++++.+.++||++||..+|..            ..+...|+.+|.+.|
T Consensus        75 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~------------~~~~~~Y~~sK~a~~  142 (207)
T 2yut_A           75 GKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQ------------VPGFAAYAAAKGALE  142 (207)
T ss_dssp             CCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHS------------STTBHHHHHHHHHHH
T ss_pred             CcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccC------------CCCcchHHHHHHHHH
Confidence            96532        2345578999999999999997666789999999986632            123578999999998


Q ss_pred             HHHHH-------cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          216 QYIRK-------SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       216 ~~~~~-------~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      .+.+.       .|+++++|+||+++|++..+      .......+++++|+|++++.++.++.
T Consensus       143 ~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~------~~~~~~~~~~~~dva~~~~~~~~~~~  200 (207)
T 2yut_A          143 AYLEAARKELLREGVHLVLVRLPAVATGLWAP------LGGPPKGALSPEEAARKVLEGLFREP  200 (207)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECCCCBCSGGGGG------GTSCCTTCBCHHHHHHHHHHHHC--C
T ss_pred             HHHHHHHHHHhhhCCEEEEEecCcccCCCccc------cCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence            77642       59999999999999986221      11223568999999999998887765

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.95  E-value=1.3e-27  Score=204.93  Aligned_cols=207  Identities=14%  Similarity=0.115  Sum_probs=150.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.++.++...+...++.++.+|++| .+++.+++..      ++
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~i   81 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence            3568999999999999999999999999999999998776655433224578999999999 7666555432      38


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++|+..+++|+.+++++++++    ++.+ ++||++||...+...            ...
T Consensus        82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------------~~~  148 (253)
T 1hxh_A           82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPI------------EQY  148 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCC------------TTB
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCC------------CCC
Confidence            999999997532        235567899999988887766    3445 899999999765321            224


Q ss_pred             hHHHHHHHHHHHHHHH-------c--CCcEEEEecCcccCCCCCC----cee---eccc--cccccCCCCHHHHHHHHHH
Q 022216          205 GLTLIAKLQAEQYIRK-------S--GINYTIIRPGGLRNEPPTG----NII---METE--DTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~~-------~--~i~~~~irpg~v~~~~~~~----~~~---~~~~--~~~~~~~v~~~Dva~~~~~  266 (301)
                      ..|..+|.+.+.+.+.       .  |+++++|+||+++|++...    ...   ....  ......+.+++|+|++++.
T Consensus       149 ~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~  228 (253)
T 1hxh_A          149 AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLF  228 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhhccCccCCCCCHHHHHHHHHH
Confidence            6789999998876542       3  8999999999999975322    100   0000  1112235789999999977


Q ss_pred             HhcCCC--CCCcEEEeecC
Q 022216          267 ALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~~  283 (301)
                      ++..+.  ..++++++.++
T Consensus       229 l~s~~~~~~tG~~~~vdgG  247 (253)
T 1hxh_A          229 LASDESSVMSGSELHADNS  247 (253)
T ss_dssp             HHSGGGTTCCSCEEEESSS
T ss_pred             HcCccccCCCCcEEEECCC
Confidence            775432  35777777664

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.95  E-value=5.2e-27  Score=207.71  Aligned_cols=210  Identities=16%  Similarity=0.176  Sum_probs=158.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-c-----hhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-D-----KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~-----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      +|+||||||+|+||++++++|+++|++|++++|+. +     +.+.+......+++++.+|++| .+++.+++++ +|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d-~~~l~~a~~~-~d~v   81 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEE-HEKMVSVLKQ-VDIV   81 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHTT-CSEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCC-HHHHHHHHcC-CCEE
Confidence            57899999999999999999999999999999986 2     1111100012578999999999 8999999999 9999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCCCcchhhcch-hhHHHHHHHHHHHH
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTLIAKLQAEQY  217 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~-~~~y~~sK~~~e~~  217 (301)
                      ||||+...           +.++.++++++++.+ +++||+ |   +||....    +.. +..+ ...| .+|..+|++
T Consensus        82 i~~a~~~~-----------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~----~~~-~~~p~~~~y-~sK~~~e~~  140 (321)
T 3c1o_A           82 ISALPFPM-----------ISSQIHIINAIKAAGNIKRFLP-S---DFGCEED----RIK-PLPPFESVL-EKKRIIRRA  140 (321)
T ss_dssp             EECCCGGG-----------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSCGG----GCC-CCHHHHHHH-HHHHHHHHH
T ss_pred             EECCCccc-----------hhhHHHHHHHHHHhCCccEEec-c---ccccCcc----ccc-cCCCcchHH-HHHHHHHHH
Confidence            99998532           567899999999998 999983 3   3443211    101 1122 4578 999999999


Q ss_pred             HHHcCCcEEEEecCcccCCC------------CCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCC
Q 022216          218 IRKSGINYTIIRPGGLRNEP------------PTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVD  285 (301)
Q Consensus       218 ~~~~~i~~~~irpg~v~~~~------------~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~  285 (301)
                      +++.++++++|||+.++++.            ..+.+...........+++++|+|++++.++.++...++++++.++  
T Consensus       141 ~~~~~~~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~g~--  218 (321)
T 3c1o_A          141 IEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPP--  218 (321)
T ss_dssp             HHHHTCCBEEEECCEEHHHHHHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGGTTEEEECCCG--
T ss_pred             HHHcCCCeEEEEeceeccccccccccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccccCeEEEEeCC--
Confidence            99999999999999887641            1112222222233346899999999999999887666778888752  


Q ss_pred             CCCcCHHHHHHHhhc
Q 022216          286 APKRSYEDLFGSIKQ  300 (301)
Q Consensus       286 ~~~~s~~e~~~~i~~  300 (301)
                      ++.+|++|+++.+++
T Consensus       219 ~~~~t~~e~~~~~~~  233 (321)
T 3c1o_A          219 KNIISQNELISLWEA  233 (321)
T ss_dssp             GGEEEHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHH
Confidence            378999999998875

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.95  E-value=2.7e-27  Score=205.39  Aligned_cols=206  Identities=15%  Similarity=0.133  Sum_probs=147.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCchhhhcccc----CCCCeEEEEccCCCCh----HhHHHHhc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLSK----DNPSLQIVKADVTEGS----AKLSEAIG  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~~~~~~~~----~~~~~~~~~~Dl~~~~----~~~~~~~~  133 (301)
                      .+++|++|||||+||||++++++|+++|++|++++| +.++.++....    ...++.++.+|++| .    +++.+++.
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~   86 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL-SSSLLDCCEDIID   86 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-STTHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC-ccccHHHHHHHHH
Confidence            456899999999999999999999999999999999 76555443221    14678999999999 6    66665553


Q ss_pred             -------CCCCEEEEccCCCCC-------------------CCCCCceeeehHHHHHHHHHHHHc---CC------CEEE
Q 022216          134 -------DDSEAVVCATGFQPG-------------------WDLFAPWKVDNFGTVNLVEACRKR---GV------NRFI  178 (301)
Q Consensus       134 -------~~~d~Vi~~Ag~~~~-------------------~~~~~~~~~N~~g~~~l~~a~~~~---~~------~~iV  178 (301)
                             + +|+||||||....                   ++|+.++++|+.|++++++++.+.   +.      ++||
T Consensus        87 ~~~~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv  165 (276)
T 1mxh_A           87 CSFRAFGR-CDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVV  165 (276)
T ss_dssp             HHHHHHSC-CCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEE
T ss_pred             HHHHhcCC-CCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEE
Confidence                   5 9999999996432                   223457889999999999999763   33      7999


Q ss_pred             EecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc--eeec-ccc
Q 022216          179 LISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN--IIME-TED  248 (301)
Q Consensus       179 ~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~--~~~~-~~~  248 (301)
                      ++||...+...            .....|+.+|.+.+.+.+       ..|+++++|+||++.|+ ..-.  .... ...
T Consensus       166 ~isS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~~~~~~~~~~~~~  232 (276)
T 1mxh_A          166 NLCDAMTDLPL------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PAMPQETQEEYRRK  232 (276)
T ss_dssp             EECCGGGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SSSCHHHHHHHHTT
T ss_pred             EECchhhcCCC------------CCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-ccCCHHHHHHHHhc
Confidence            99998765321            224678999999886653       35899999999999998 2100  0000 001


Q ss_pred             ccccC-CCCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          249 TLYEG-TISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       249 ~~~~~-~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ..... +.+++|+|++++.++..+.  ..++++++.++
T Consensus       233 ~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG  270 (276)
T 1mxh_A          233 VPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG  270 (276)
T ss_dssp             CTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence            11223 6899999999977765432  24677777663

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.95  E-value=7.3e-27  Score=201.55  Aligned_cols=209  Identities=16%  Similarity=0.082  Sum_probs=150.7

Q ss_pred             hcccCCeEEEEcCCc-hHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           62 VSVKQKKIFVAGATG-SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG-~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      ..+++|++|||||+| +||++++++|+++|++|++++|+.++.++...    ....++.++.+|++| .+++.+.+..  
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~   96 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS-TEAVDALITQTV   96 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC-HHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC-HHHHHHHHHHHH
Confidence            356799999999997 89999999999999999999999876554332    134689999999999 7666665532  


Q ss_pred             ----CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc-----CCCEEEEecccccccccCCCCCCcc
Q 022216          135 ----DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR-----GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~-----~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                          ++|+||||||+...        ++|+..+++|+.+++++++++...     +.++||++||...+...        
T Consensus        97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------  168 (266)
T 3o38_A           97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQ--------  168 (266)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCC--------
T ss_pred             HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCC--------
Confidence                39999999997542        235567899999999999998543     45689999998754221        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~~~  265 (301)
                          .....|+.+|.+.+.+.+       ..|++++.|+||++.+++.......     .........+.+++|+|++++
T Consensus       169 ----~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~~~dva~~i~  244 (266)
T 3o38_A          169 ----HSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAEPWEVAATIA  244 (266)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------CCTTSSCCCHHHHHHHHH
T ss_pred             ----CCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHHHHHHHHhcCCcCCCCCHHHHHHHHH
Confidence                235779999999987653       3689999999999999864432110     111122234679999999997


Q ss_pred             HHhcCCC--CCCcEEEeecC
Q 022216          266 EALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~~  283 (301)
                      .++..+.  ..|+++++.++
T Consensus       245 ~l~s~~~~~~tG~~i~vdgG  264 (266)
T 3o38_A          245 FLASDYSSYMTGEVVSVSSQ  264 (266)
T ss_dssp             HHHSGGGTTCCSCEEEESSC
T ss_pred             HHcCccccCccCCEEEEcCC
Confidence            7665422  45777877764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.95  E-value=1.8e-27  Score=203.90  Aligned_cols=210  Identities=15%  Similarity=0.132  Sum_probs=148.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccC--CCChHhHHHHhcC--
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADV--TEGSAKLSEAIGD--  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl--~~~~~~~~~~~~~--  134 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.+++++....    ....+.++.+|+  +| .+++.+.+..  
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~   87 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCT-SENCQQLAQRIA   87 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCC-HHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCC-HHHHHHHHHHHH
Confidence            46799999999999999999999999999999999998766543321    234788999999  87 6655555431  


Q ss_pred             ----CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcc
Q 022216          135 ----DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                          ++|+||||||....         ++|+..+++|+.|++++++++    ++.+.++||++||...+...        
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--------  159 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGR--------  159 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCC--------
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCC--------
Confidence                39999999997421         234567899999999999998    44566899999998754221        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH----H--cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR----K--SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~----~--~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                          .....|+.+|.+.+.+.+    +  ..++++.|.||++.+++.....    .......+.+++|+|++++.++..+
T Consensus       160 ----~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~~~~~~----~~~~~~~~~~p~dva~~~~~L~s~~  231 (252)
T 3f1l_A          160 ----ANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAF----PTEDPQKLKTPADIMPLYLWLMGDD  231 (252)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHHHHHHC----TTCCGGGSBCTGGGHHHHHHHHSGG
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCchhhhhC----CccchhccCCHHHHHHHHHHHcCcc
Confidence                224678999999987654    2  2399999999999987532211    0111224678999999996665433


Q ss_pred             C--CCCcEEEeecCCCCCCcCHH
Q 022216          272 E--SSYKVVEIISRVDAPKRSYE  292 (301)
Q Consensus       272 ~--~~~~~~~v~~~~~~~~~s~~  292 (301)
                      .  ..|+++++.+   +...++.
T Consensus       232 ~~~itG~~i~vdg---G~~~~~~  251 (252)
T 3f1l_A          232 SRRKTGMTFDAQP---GRKPGIS  251 (252)
T ss_dssp             GTTCCSCEEESSC---C------
T ss_pred             ccCCCCCEEEeCC---CcCCCCC
Confidence            2  3455666655   4666554

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.95  E-value=3e-27  Score=201.56  Aligned_cols=207  Identities=17%  Similarity=0.118  Sum_probs=152.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.++.++....    ...++.++.+|++| .+++.+++.     
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS-EESINKAFEEIYNL   82 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC-HHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999987665443211    23578999999999 777777665     


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        + +|+||||||....        ++++..+++|+.+++++++++    ++.+.++||++||...+...          
T Consensus        83 ~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------  151 (248)
T 2pnf_A           83 VDG-IDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN----------  151 (248)
T ss_dssp             SSC-CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC----------
T ss_pred             cCC-CCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC----------
Confidence              5 9999999996542        134567899999998887776    44567899999998643211          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHHh
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                        .....|..+|.+.+.+.+       ..++++++|+||++.+++.......   . ........+++++|+|++++.++
T Consensus       152 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  229 (248)
T 2pnf_A          152 --VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLC  229 (248)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCHHHHHHHHHHHH
T ss_pred             --CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhccHHHHHHHHhcCCCCCccCHHHHHHHHHHHh
Confidence              124678899998886653       3589999999999999864321000   0 00112235789999999998777


Q ss_pred             cCC--CCCCcEEEeecC
Q 022216          269 LHP--ESSYKVVEIISR  283 (301)
Q Consensus       269 ~~~--~~~~~~~~v~~~  283 (301)
                      ..+  ...++++++.++
T Consensus       230 ~~~~~~~~G~~~~v~gg  246 (248)
T 2pnf_A          230 SELASYITGEVIHVNGG  246 (248)
T ss_dssp             SGGGTTCCSCEEEESTT
T ss_pred             CchhhcCCCcEEEeCCC
Confidence            643  235778888764

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.95  E-value=3.6e-27  Score=201.05  Aligned_cols=205  Identities=16%  Similarity=0.111  Sum_probs=144.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      +++|+||||||+|+||++++++|+++|++|+++ .|+++..++...   ....++.++.+|++| .+++.+++.      
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   81 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN-PEDVENMVKTAMDAF   81 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999998 556555443221   134678999999999 777766654      


Q ss_pred             -CCCCEEEEccCCCC--------CCCCCCceeeehHHHHHHHHHHH----HcCCCEEEEeccccc-ccccCCCCCCcchh
Q 022216          134 -DDSEAVVCATGFQP--------GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILV-NGAAMGQILNPAYI  199 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~--------~~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~-~~~~~~~~~~~~~~  199 (301)
                       + +|+||||||...        .++++..+++|+.++.++++++.    +.+.++||++||... |+.           
T Consensus        82 ~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------  149 (247)
T 2hq1_A           82 GR-IDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN-----------  149 (247)
T ss_dssp             SC-CCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred             CC-CCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC-----------
Confidence             5 999999999643        24566788999999999888874    346689999999853 221           


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce---ee-ccccccccCCCCHHHHHHHHHHHh
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI---IM-ETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~---~~-~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                        .....|+.+|.+.+.+.+       ..|+++++|+||.+.+++.....   .. .........+.+++|+|++++.++
T Consensus       150 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  227 (247)
T 2hq1_A          150 --AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPEEVANVVGFLA  227 (247)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHH
T ss_pred             --CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcchHHHHHHHhhCCCCCCCCHHHHHHHHHHHc
Confidence              124678999999987664       24899999999999887432110   00 001112235789999999998777


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      ..+.  ..++++++.++
T Consensus       228 ~~~~~~~~G~~~~v~gG  244 (247)
T 2hq1_A          228 SDDSNYITGQVINIDGG  244 (247)
T ss_dssp             SGGGTTCCSCEEEESTT
T ss_pred             CcccccccCcEEEeCCC
Confidence            5432  35788998764

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.95  E-value=6.2e-27  Score=199.70  Aligned_cols=204  Identities=16%  Similarity=0.127  Sum_probs=149.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+.+++++.....  ++.++.+|++| .+++.+++.+      ++|
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id   79 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV--GAHPVVMDVAD-PASVERGFAEALAHLGRLD   79 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--TCEEEECCTTC-HHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence            56899999999999999999999999999999999887766554322  38889999999 7666655432      399


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +||||||....        ++|+..+++|+.|++++++++.+    .+.++||++||...++.             ....
T Consensus        80 ~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-------------~~~~  146 (245)
T 1uls_A           80 GVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN-------------LGQA  146 (245)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC-------------TTCH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCC-------------CCch
Confidence            99999997542        23556789999999999998854    35679999999873221             1235


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHHhcCCC--
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEALLHPE--  272 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~l~~~~--  272 (301)
                      .|..+|.+.+.+.+       ..|+++++|+||++.+++.......   . ........+.+++|+|++++.++..+.  
T Consensus       147 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~  226 (245)
T 1uls_A          147 NYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAYAALFLLSDESSF  226 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcCHHHHHHHHhhCCCCCCcCHHHHHHHHHHHhCchhcC
Confidence            68888888876543       3689999999999999875431100   0 000112346799999999977775432  


Q ss_pred             CCCcEEEeecC
Q 022216          273 SSYKVVEIISR  283 (301)
Q Consensus       273 ~~~~~~~v~~~  283 (301)
                      ..++++.+.++
T Consensus       227 ~tG~~~~vdgG  237 (245)
T 1uls_A          227 ITGQVLFVDGG  237 (245)
T ss_dssp             CCSCEEEESTT
T ss_pred             CcCCEEEECCC
Confidence            35777777664

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.95  E-value=3.5e-27  Score=207.48  Aligned_cols=210  Identities=19%  Similarity=0.265  Sum_probs=157.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh------hhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA------KTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~------~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      +|+|+||||||+||++++++|+++|++|+++.|+....      ..+......+++++.+|++| .+++.+++++ +|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~l~~~~~~-~d~v   81 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD-HASLVEAVKN-VDVV   81 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTC-HHHHHHHHHT-CSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCC-HHHHHHHHcC-CCEE
Confidence            57899999999999999999999999999999986432      11100023679999999999 8999999999 9999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCCCcchhhcch-hhHHHHHHHHHHHH
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTLIAKLQAEQY  217 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~-~~~y~~sK~~~e~~  217 (301)
                      ||+|+..           ++.++.+++++|++.+ +++||+ |+   ||.....    . .+..+ ...| .+|..+|++
T Consensus        82 i~~a~~~-----------~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~~----~-~~~~p~~~~y-~sK~~~e~~  140 (308)
T 1qyc_A           82 ISTVGSL-----------QIESQVNIIKAIKEVGTVKRFFP-SE---FGNDVDN----V-HAVEPAKSVF-EVKAKVRRA  140 (308)
T ss_dssp             EECCCGG-----------GSGGGHHHHHHHHHHCCCSEEEC-SC---CSSCTTS----C-CCCTTHHHHH-HHHHHHHHH
T ss_pred             EECCcch-----------hhhhHHHHHHHHHhcCCCceEee-cc---cccCccc----c-ccCCcchhHH-HHHHHHHHH
Confidence            9999853           2567899999999998 999984 43   4432111    0 11122 3567 999999999


Q ss_pred             HHHcCCcEEEEecCcccCCCCC------------CceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCC
Q 022216          218 IRKSGINYTIIRPGGLRNEPPT------------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVD  285 (301)
Q Consensus       218 ~~~~~i~~~~irpg~v~~~~~~------------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~  285 (301)
                      +++.+++++++||+.++++...            +.+...........+++++|+|++++.++.++...++++++.+.  
T Consensus       141 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~--  218 (308)
T 1qyc_A          141 IEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLP--  218 (308)
T ss_dssp             HHHHTCCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGTTEEEECCCG--
T ss_pred             HHhcCCCeEEEEeceeccccccccccccccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCccccCeEEEEeCC--
Confidence            9999999999999988763211            11122222233346899999999999888877656778888752  


Q ss_pred             CCCcCHHHHHHHhhc
Q 022216          286 APKRSYEDLFGSIKQ  300 (301)
Q Consensus       286 ~~~~s~~e~~~~i~~  300 (301)
                      ++.+|+.|+++.+++
T Consensus       219 ~~~~s~~e~~~~~~~  233 (308)
T 1qyc_A          219 ANTLSLNELVALWEK  233 (308)
T ss_dssp             GGEEEHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHH
Confidence            268999999998875

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.94  E-value=9.2e-27  Score=202.19  Aligned_cols=208  Identities=17%  Similarity=0.175  Sum_probs=149.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-------------Cchhhhcc---ccCCCCeEEEEccCCCChH
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-------------LDKAKTTL---SKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-------------~~~~~~~~---~~~~~~~~~~~~Dl~~~~~  126 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+             .+.+++..   .....++.++.+|++| .+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~   86 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD-FD   86 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HH
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HH
Confidence            4678999999999999999999999999999999884             22222221   1245689999999999 76


Q ss_pred             hHHHHhcC------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEeccccccc
Q 022216          127 KLSEAIGD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNG  187 (301)
Q Consensus       127 ~~~~~~~~------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~  187 (301)
                      ++.+.+..      ++|+||||||+...        ++|+..+++|+.|++++++++.    +.+ .++||++||...+.
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  166 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK  166 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence            66655532      39999999997543        2456678999999999999863    333 46999999987543


Q ss_pred             ccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce--------------eecc
Q 022216          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI--------------IMET  246 (301)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~--------------~~~~  246 (301)
                      ..            .....|..+|.+.+.+.+       ..||+++.|+||++.|++.....              ....
T Consensus       167 ~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  234 (277)
T 3tsc_A          167 MQ------------PFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVL  234 (277)
T ss_dssp             CC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGGTTTT
T ss_pred             CC------------CCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHHHHHh
Confidence            21            124678999999886654       35899999999999998754310              0000


Q ss_pred             ccccccCCCCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          247 EDTLYEGTISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       247 ~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      .......+.+++|+|++++.++..+.  ..|+++++.++
T Consensus       235 ~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  273 (277)
T 3tsc_A          235 TPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQG  273 (277)
T ss_dssp             CCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             hhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCC
Confidence            11111246799999999976664332  35677777663

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.94  E-value=6.4e-27  Score=201.70  Aligned_cols=204  Identities=20%  Similarity=0.207  Sum_probs=143.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh-------c
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI-------G  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-------~  133 (301)
                      +.+|++|||||+||||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++       +
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTD-RHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence            357999999999999999999999999999999999876655432   235678899999999 76666554       3


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      . +|+||||||....        ++|+..+++|+.|++++++++.    +.+.++||++||...+...            
T Consensus        81 ~-iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~------------  147 (264)
T 3tfo_A           81 R-IDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVV------------  147 (264)
T ss_dssp             C-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC------------
T ss_pred             C-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccC------------
Confidence            5 9999999997542        2456678999999999988873    3456799999998754321            


Q ss_pred             chhhHHHHHHHHHHHHHH----H-cCCcEEEEecCcccCCCCCCceeecc---ccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          202 NVFGLTLIAKLQAEQYIR----K-SGINYTIIRPGGLRNEPPTGNIIMET---EDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~----~-~~i~~~~irpg~v~~~~~~~~~~~~~---~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      .....|+.+|.+.+.+.+    + .|++++.|+||++.|++.........   .......+.+++|+|++++.++..+. 
T Consensus       148 ~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~~~-  226 (264)
T 3tfo_A          148 PTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHEETMAAMDTYRAIALQPADIARAVRQVIEAPQ-  226 (264)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-----------------------CCCHHHHHHHHHHHHHSCT-
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccchhHHHHHHhhhccCCCHHHHHHHHHHHhcCCc-
Confidence            224678999998886653    2 38999999999999987543211100   00111124789999999988777665 


Q ss_pred             CCcEEEeec
Q 022216          274 SYKVVEIIS  282 (301)
Q Consensus       274 ~~~~~~v~~  282 (301)
                      ...+.++.-
T Consensus       227 ~~~~~~i~i  235 (264)
T 3tfo_A          227 SVDTTEITI  235 (264)
T ss_dssp             TEEEEEEEE
T ss_pred             cCccceEEE
Confidence            344444444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.7e-26  Score=199.94  Aligned_cols=209  Identities=17%  Similarity=0.149  Sum_probs=151.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhcc---ccCCCCeEEEEccCCCChHhHHHHhc----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+... .++..   .....++.++.+|++| .+++.+++.    
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  105 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD-AEAIEQAIRETVE  105 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence            45789999999999999999999999999999998776532 22221   2245688999999999 766666554    


Q ss_pred             ---CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhh
Q 022216          134 ---DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                         + +|+||||||+...        ++|+..+++|+.|++++++++.+.  +.++||++||......           +
T Consensus       106 ~~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~-----------~  173 (271)
T 3v2g_A          106 ALGG-LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV-----------P  173 (271)
T ss_dssp             HHSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC-----------C
T ss_pred             HcCC-CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC-----------C
Confidence               5 9999999997542        245677899999999999999654  3479999999753211           1


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec---cccccccCCCCHHHHHHHHHHHhcC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME---TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~---~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ......|..+|.+.+.+.+       ..||+++.|+||++.|++........   ........+.+++|+|++++.++..
T Consensus       174 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~  253 (271)
T 3v2g_A          174 WPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDHAEAQRERIATGSYGEPQDIAGLVAWLAGP  253 (271)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSSHHHHHHTCTTSSCBCHHHHHHHHHHHHSG
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchhHHHHHhcCCCCCCCCHHHHHHHHHHHhCc
Confidence            1235779999999887653       35899999999999998754321100   0111223467899999999665532


Q ss_pred             C--CCCCcEEEeecC
Q 022216          271 P--ESSYKVVEIISR  283 (301)
Q Consensus       271 ~--~~~~~~~~v~~~  283 (301)
                      .  ...|+++++.++
T Consensus       254 ~~~~itG~~i~vdGG  268 (271)
T 3v2g_A          254 QGKFVTGASLTIDGG  268 (271)
T ss_dssp             GGTTCCSCEEEESTT
T ss_pred             ccCCccCCEEEeCcC
Confidence            2  245677777653

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.3e-26  Score=205.47  Aligned_cols=197  Identities=19%  Similarity=0.242  Sum_probs=139.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-----hhhhc---cccCCCCeEEEEccCCCChHhHHHHhc-
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-----KAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIG-  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-----~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~-  133 (301)
                      ++++|+||||||+||||++++++|+++|++|++..|+..     .++++   ......++.++.+|++| .+++.+++. 
T Consensus         2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~   80 (324)
T 3u9l_A            2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS-QVSVDRAIDQ   80 (324)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHH
Confidence            356899999999999999999999999999999988742     11221   11134679999999999 777766665 


Q ss_pred             ------CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCC
Q 022216          134 ------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILN  195 (301)
Q Consensus       134 ------~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~  195 (301)
                            + +|+||||||+...        ++++.++++|+.|++++++++    ++.+.++||++||.+.+....     
T Consensus        81 ~~~~~g~-iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~-----  154 (324)
T 3u9l_A           81 IIGEDGR-IDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTP-----  154 (324)
T ss_dssp             HHHHHSC-CSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCC-----
T ss_pred             HHHHcCC-CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCC-----
Confidence                  5 9999999996532        245567899999999999998    566778999999987553211     


Q ss_pred             cchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc-----------------c---
Q 022216          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE-----------------D---  248 (301)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~-----------------~---  248 (301)
                            .....|..+|.+.+.+.+       ..||++++|+||.+.|+...........                 +   
T Consensus       155 ------~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (324)
T 3u9l_A          155 ------PYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEEIK  228 (324)
T ss_dssp             ------SSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTTTTHHHHHH
T ss_pred             ------CcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccccCCHHHHH
Confidence                  114678999999987653       2699999999999987643211000000                 0   


Q ss_pred             ----ccccCCCCHHHHHHHHHHHhcCCC
Q 022216          249 ----TLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       249 ----~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                          .......+++|+|++++.++..+.
T Consensus       229 ~~~~~l~~~~~~p~~vA~aiv~~~~~~~  256 (324)
T 3u9l_A          229 KAFAAIVPPDADVSLVADAIVRVVGTAS  256 (324)
T ss_dssp             HHHHHTSCTTCCTHHHHHHHHHHHTSCT
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHhcCCC
Confidence                000122588999999999998774

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.94  E-value=2.2e-27  Score=207.52  Aligned_cols=208  Identities=12%  Similarity=0.124  Sum_probs=153.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh----ccccCCCCeEEEEccCCCChHhHHHHhc----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+...+    .......++.++.+|++| .+++.+++.    
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  121 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD-EQHCKDIVQETVR  121 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999998754322    222245689999999999 766665554    


Q ss_pred             ---CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchh
Q 022216          134 ---DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                         . +|+||||||....         ++|+..+++|+.|++++++++.+.  ..++||++||...+...          
T Consensus       122 ~~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------  190 (291)
T 3ijr_A          122 QLGS-LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGN----------  190 (291)
T ss_dssp             HHSS-CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCC----------
T ss_pred             HcCC-CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCC----------
Confidence               5 9999999996432         245678899999999999999764  24699999998765322          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----eccccccccCCCCHHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----METEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                        .....|+.+|.+.+.+.+       ..|++++.|+||++.|++......     ..........+.+++|+|++++.+
T Consensus       191 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L  268 (291)
T 3ijr_A          191 --ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPYELAPAYVYL  268 (291)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHHTTTTSTTSSCBCGGGTHHHHHHH
T ss_pred             --CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHHHHccCCCCCCcCHHHHHHHHHHH
Confidence              224678999999987653       358999999999999986322110     011112233467999999999766


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..|+++++.++
T Consensus       269 ~s~~~~~itG~~i~vdGG  286 (291)
T 3ijr_A          269 ASSDSSYVTGQMIHVNGG  286 (291)
T ss_dssp             HSGGGTTCCSCEEEESSS
T ss_pred             hCCccCCCcCCEEEECCC
Confidence            64332  45677777664

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.94  E-value=1.3e-27  Score=207.60  Aligned_cols=207  Identities=16%  Similarity=0.155  Sum_probs=152.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|++++.++...   ....++.++.+|++| .+++.+++.      
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERY   97 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999998766544322   124578999999999 766666554      


Q ss_pred             -CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc------CCCEEEEecccccccccCCCCCCcch
Q 022216          134 -DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR------GVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~------~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                       + +|+||||||....        ++|+..+++|+.|++++++++.+.      +.++||++||...+...         
T Consensus        98 g~-iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~---------  167 (277)
T 2rhc_B           98 GP-VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV---------  167 (277)
T ss_dssp             CS-CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCC---------
T ss_pred             CC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCC---------
Confidence             5 9999999996532        234567899999999999997554      55799999998754211         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---e------c------cccccccCCCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---M------E------TEDTLYEGTIS  256 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~------~------~~~~~~~~~v~  256 (301)
                         .....|+.+|.+.+.+.+       ..|+++++|+||++.|++......   .      .      ........+++
T Consensus       168 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~  244 (277)
T 2rhc_B          168 ---VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQ  244 (277)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTSSCBC
T ss_pred             ---CCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhcCCCCCCcC
Confidence               224678999999887654       258999999999999985322100   0      0      00112234789


Q ss_pred             HHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          257 RDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++|+|++++.++..+.  ..++++++.++
T Consensus       245 ~~dvA~~v~~l~s~~~~~~tG~~~~vdGG  273 (277)
T 2rhc_B          245 PSEVAEMVAYLIGPGAAAVTAQALNVCGG  273 (277)
T ss_dssp             HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence            9999999977765432  35778888764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.94  E-value=3.8e-27  Score=204.90  Aligned_cols=206  Identities=17%  Similarity=0.152  Sum_probs=150.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCC---CeEEEEccCCCChHhHHHHhc----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNP---SLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~---~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+.+++++....   ...   ++.++.+|++| .+++.+++.    
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   82 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK   82 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC-HHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999988765543221   222   78999999999 766665554    


Q ss_pred             ---CCCCEEEEccCCCCCC------------CCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCC
Q 022216          134 ---DDSEAVVCATGFQPGW------------DLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~~------------~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~  194 (301)
                         + +|+||||||.....            +|+..+++|+.+++++++++.+    .+ ++||++||...+....    
T Consensus        83 ~~g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~----  156 (280)
T 1xkq_A           83 QFGK-IDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQ----  156 (280)
T ss_dssp             HHSC-CCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCC----
T ss_pred             hcCC-CCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCCC----
Confidence               5 99999999965321            2455788999999999999853    34 7999999987653210    


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce------------eec-cccccccCC
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI------------IME-TEDTLYEGT  254 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~------------~~~-~~~~~~~~~  254 (301)
                             .....|+.+|.+.+.+.+       .+|+++++|+||++.|++.....            ... ........+
T Consensus       157 -------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  229 (280)
T 1xkq_A          157 -------PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAA  229 (280)
T ss_dssp             -------CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSC
T ss_pred             -------CcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCCCCCCC
Confidence                   124678999999887654       36899999999999998632210            000 001112346


Q ss_pred             CCHHHHHHHHHHHhcCC---CCCCcEEEeecC
Q 022216          255 ISRDQVAEVAVEALLHP---ESSYKVVEIISR  283 (301)
Q Consensus       255 v~~~Dva~~~~~~l~~~---~~~~~~~~v~~~  283 (301)
                      .+++|+|++++.++..+   ...++++++.++
T Consensus       230 ~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG  261 (280)
T 1xkq_A          230 GKPEHIANIILFLADRNLSFYILGQSIVADGG  261 (280)
T ss_dssp             BCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred             CCHHHHHHHHHHhcCcccccCccCCeEEECCC
Confidence            79999999997776543   245778887764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.94  E-value=1.5e-26  Score=198.20  Aligned_cols=201  Identities=15%  Similarity=0.166  Sum_probs=145.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      ..+++|++|||||+|+||++++++|+++|++|++++|++++.+        .+.++.+|++| .+++.+++..      +
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--------~~~~~~~Dl~d-~~~v~~~~~~~~~~~g~   87 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE--------GFLAVKCDITD-TEQVEQAYKEIEETHGP   87 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------TSEEEECCTTS-HHHHHHHHHHHHHHTCS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc--------cceEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence            3567899999999999999999999999999999999866432        37889999999 7666655532      3


Q ss_pred             CCEEEEccCCCC--------CCCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQP--------GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~--------~~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||...        .++|+..+++|+.|++++++++.    +.+.++||++||...+..            ...
T Consensus        88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~  155 (253)
T 2nm0_A           88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG------------SAG  155 (253)
T ss_dssp             CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC------------HHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC------------CCC
Confidence            899999999643        24577788999999999998874    346689999999864321            123


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec----cccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME----TEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~----~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ...|+.+|.+.+.+.+       ..|+++++|+||++.+++........    ........+++++|+|++++.++..+.
T Consensus       156 ~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~i~~l~s~~~  235 (253)
T 2nm0_A          156 QANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQVPLGRYARPEEIAATVRFLASDDA  235 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---------CHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGG
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccc
Confidence            5679999999987664       25899999999999998643211000    001122346899999999977775432


Q ss_pred             --CCCcEEEeecC
Q 022216          273 --SSYKVVEIISR  283 (301)
Q Consensus       273 --~~~~~~~v~~~  283 (301)
                        ..++++.+.++
T Consensus       236 ~~~tG~~i~vdGG  248 (253)
T 2nm0_A          236 SYITGAVIPVDGG  248 (253)
T ss_dssp             TTCCSCEEEESTT
T ss_pred             cCCcCcEEEECCc
Confidence              35677777664

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.94  E-value=2.5e-27  Score=205.68  Aligned_cols=209  Identities=17%  Similarity=0.122  Sum_probs=151.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.++.++...+  ...++.++.+|++| .+++.+++..     
T Consensus        25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~  103 (276)
T 2b4q_A           25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSS-EAGARRLAQALGELS  103 (276)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS-HHHHHHHHHHHHHHC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC-HHHHHHHHHHHHHhc
Confidence            356789999999999999999999999999999999987665543221  11278889999999 7766665541     


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCC----CEEEEecccccccccCCCCCCcc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGV----NRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~----~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                       ++|+||||||....        ++|+..+++|+.|++++++++.    +.+.    ++||++||...+....       
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~-------  176 (276)
T 2b4q_A          104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMG-------  176 (276)
T ss_dssp             SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCC-------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCC-------
Confidence             39999999996432        2345678999999999888873    3344    7999999987653221       


Q ss_pred             hhhcchhh-HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--c--cc--cccccCCCCHHHHHHH
Q 022216          198 YIFLNVFG-LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--E--TE--DTLYEGTISRDQVAEV  263 (301)
Q Consensus       198 ~~~~~~~~-~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--~--~~--~~~~~~~v~~~Dva~~  263 (301)
                           ... .|+.+|.+.+.+.+       ..|+++++|+||++.+++.......  .  ..  ......+.+++|+|++
T Consensus       177 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~  251 (276)
T 2b4q_A          177 -----EQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPEEMAAL  251 (276)
T ss_dssp             -----CSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTSTTSSCCCHHHHHHH
T ss_pred             -----CCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcchhHHHHHHhhcCCCCCCcCCHHHHHHH
Confidence                 123 68899999887653       3589999999999999875431100  0  00  1122346799999999


Q ss_pred             HHHHhcCCC--CCCcEEEeecC
Q 022216          264 AVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       264 ~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++.++..+.  ..++++++.++
T Consensus       252 v~~l~s~~~~~~tG~~i~vdGG  273 (276)
T 2b4q_A          252 AISLAGTAGAYMTGNVIPIDGG  273 (276)
T ss_dssp             HHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHhCccccCCCCCEEEeCCC
Confidence            977775432  45677777663

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.94  E-value=7.7e-27  Score=199.02  Aligned_cols=200  Identities=15%  Similarity=0.099  Sum_probs=142.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--------  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--------  133 (301)
                      |++|+||||||+|+||++++++|+++|  ++|++++|+.++.+++......++.++.+|++| .+++.+++.        
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~   79 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGG
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCC-HHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999  999999999877655432224678999999999 777766665        


Q ss_pred             -CCCCEEEEccCCCC-C--------CCCCCceeeehHHHHHHHHHHHH----c------C-----CCEEEEecccccccc
Q 022216          134 -DDSEAVVCATGFQP-G--------WDLFAPWKVDNFGTVNLVEACRK----R------G-----VNRFILISSILVNGA  188 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~-~--------~~~~~~~~~N~~g~~~l~~a~~~----~------~-----~~~iV~~SS~~~~~~  188 (301)
                       + +|+||||||... .        ++++..+++|+.++.++++++.+    .      +     .++||++||...+..
T Consensus        80 ~~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~  158 (250)
T 1yo6_A           80 DG-LSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT  158 (250)
T ss_dssp             GC-CCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred             CC-CcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccC
Confidence             6 999999999754 1        12445788999999999988743    2      4     689999999876533


Q ss_pred             cCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHH
Q 022216          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVA  261 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva  261 (301)
                      ....   .  .+..+...|+.+|.+.+.+.+       ..|+++++|+||++.+++...           ..+++++|+|
T Consensus       159 ~~~~---~--~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----------~~~~~~~~~a  222 (250)
T 1yo6_A          159 DNTS---G--SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK-----------NAALTVEQST  222 (250)
T ss_dssp             TCCS---T--TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------HHHH
T ss_pred             Cccc---c--cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC-----------CCCCCHHHHH
Confidence            2110   0  011235679999999987664       248999999999999987532           1468999999


Q ss_pred             HHHHHHhcCCC--CCCcEEEee
Q 022216          262 EVAVEALLHPE--SSYKVVEII  281 (301)
Q Consensus       262 ~~~~~~l~~~~--~~~~~~~v~  281 (301)
                      +.++.++..+.  ..++.+.+.
T Consensus       223 ~~~~~~~~~~~~~~~G~~~~~~  244 (250)
T 1yo6_A          223 AELISSFNKLDNSHNGRFFMRN  244 (250)
T ss_dssp             HHHHHHHTTCCGGGTTCEEETT
T ss_pred             HHHHHHHhcccccCCCeEEEEC
Confidence            99998887654  245555443

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.94  E-value=8.5e-27  Score=199.99  Aligned_cols=207  Identities=14%  Similarity=0.064  Sum_probs=144.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC---CCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---~~d~Vi~~  142 (301)
                      +|+||||||+||||++++++|+++|++|++++|+.++.+.         . +.+|++| .+++.+++.+   ++|+||||
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------~-~~~Dl~~-~~~v~~~~~~~~~~id~lv~~   69 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------D-LSTAEGR-KQAIADVLAKCSKGMDGLVLC   69 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------C-TTSHHHH-HHHHHHHHTTCTTCCSEEEEC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------c-cccCCCC-HHHHHHHHHHhCCCCCEEEEC
Confidence            3689999999999999999999999999999998765431         1 6789999 7888887753   37999999


Q ss_pred             cCCCC-CCCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcc----------------hhhc
Q 022216          143 TGFQP-GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPA----------------YIFL  201 (301)
Q Consensus       143 Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~----------------~~~~  201 (301)
                      ||... ...++..+++|+.|++++++++.    +.+.++||++||...+......+....                +.+.
T Consensus        70 Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
T 1fjh_A           70 AGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQ  149 (257)
T ss_dssp             CCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTT
T ss_pred             CCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhcccCC
Confidence            99876 56678889999999999999985    445689999999987732111110000                0122


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec---c-c---cccccCCCCHHHHHHHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME---T-E---DTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~---~-~---~~~~~~~v~~~Dva~~~~~~  267 (301)
                      .+...|+.+|.+.+.+.+       ..|+++++|+||.+.|++........   . .   ......+.+++|+|++++.+
T Consensus       150 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l  229 (257)
T 1fjh_A          150 GGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIAFL  229 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CCCSTTSCCCTHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHHhcccccCCCCCHHHHHHHHHHH
Confidence            356789999999987664       36899999999999998754321100   0 0   11123468999999999877


Q ss_pred             hcCC--CCCCcEEEeecC
Q 022216          268 LLHP--ESSYKVVEIISR  283 (301)
Q Consensus       268 l~~~--~~~~~~~~v~~~  283 (301)
                      +..+  ...++.+.+.++
T Consensus       230 ~~~~~~~~tG~~~~vdgG  247 (257)
T 1fjh_A          230 MSPAASYVHGAQIVIDGG  247 (257)
T ss_dssp             TSGGGTTCCSCEEEESTT
T ss_pred             hCchhcCCcCCEEEECCC
Confidence            7544  235677777663

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.94  E-value=2.5e-27  Score=202.53  Aligned_cols=208  Identities=13%  Similarity=0.093  Sum_probs=151.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.+..++....  ...++.++.+|++| .+++.+++..      
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence            45689999999999999999999999999999999987665543221  12578999999999 7666665542      


Q ss_pred             CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHH----HcCC-CEEEEecccccccccCCCCCCcchhhc
Q 022216          135 DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGV-NRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~----~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      ++|+||||||.....        +++..+++|+.+++++++++.    +.+. ++||++||...+...            
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------  149 (251)
T 1zk4_A           82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD------------  149 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC------------
Confidence            399999999965321        245578999999888777763    4455 799999998765322            


Q ss_pred             chhhHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCce---e-e-ccccccccCCCCHHHHHHHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNI---I-M-ETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~---~-~-~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      .....|+.+|.+.+.+.+         ..|+++++|+||++.|++.....   . . .........+++++|+|++++.+
T Consensus       150 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l  229 (251)
T 1zk4_A          150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYL  229 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHHHHHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCchhhhHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence            124678999999886653         45899999999999997532210   0 0 00111223478999999999877


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..++++++.++
T Consensus       230 ~~~~~~~~~G~~~~v~gG  247 (251)
T 1zk4_A          230 ASNESKFATGSEFVVDGG  247 (251)
T ss_dssp             HSGGGTTCCSCEEEESTT
T ss_pred             cCcccccccCcEEEECCC
Confidence            75432  35778888764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.94  E-value=1.6e-26  Score=195.83  Aligned_cols=199  Identities=19%  Similarity=0.242  Sum_probs=149.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcC------C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD------D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~------~  135 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+.+++++...    ....++.++.+|++| .+++.+++..      +
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK-AESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC-HHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999999876554322    234689999999999 7777776652      3


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++.+   .+.+++|++||...+..            ....
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~------------~~~~  148 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARL------------IPYG  148 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSC------------CTTC
T ss_pred             CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhccc------------CCCc
Confidence            9999999997543        23456789999999999999853   23368888888754321            1123


Q ss_pred             hHHHHHHHHHHHHHHH-----cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEE
Q 022216          205 GLTLIAKLQAEQYIRK-----SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVE  279 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~~-----~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~  279 (301)
                      ..|..+|.+.+.+.+.     .+++++.|+||++.+++......    ......+++++|+|++++.++..+. ...+.+
T Consensus       149 ~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~~----~~~~~~~~~p~dva~~v~~l~~~~~-~~~~~~  223 (235)
T 3l77_A          149 GGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKPG----KPKEKGYLKPDEIAEAVRCLLKLPK-DVRVEE  223 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCSC----CCGGGTCBCHHHHHHHHHHHHTSCT-TCCCCE
T ss_pred             chHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccCC----cccccCCCCHHHHHHHHHHHHcCCC-CCccce
Confidence            6789999999877653     58999999999999987554321    1122357899999999987777654 333444


Q ss_pred             eec
Q 022216          280 IIS  282 (301)
Q Consensus       280 v~~  282 (301)
                      +.-
T Consensus       224 ~~~  226 (235)
T 3l77_A          224 LML  226 (235)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.94  E-value=1e-26  Score=204.10  Aligned_cols=207  Identities=14%  Similarity=0.076  Sum_probs=150.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC------------chhhhcc---ccCCCCeEEEEccCCCChHh
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL------------DKAKTTL---SKDNPSLQIVKADVTEGSAK  127 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~------------~~~~~~~---~~~~~~~~~~~~Dl~~~~~~  127 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.            +.+++..   .....++.++.+|++| .++
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~  103 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD-FDA  103 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC-HHH
Confidence            46799999999999999999999999999999999873            2222211   1245689999999999 766


Q ss_pred             HHHHhc-------CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHH----c-CCCEEEEecccccc
Q 022216          128 LSEAIG-------DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK----R-GVNRFILISSILVN  186 (301)
Q Consensus       128 ~~~~~~-------~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~----~-~~~~iV~~SS~~~~  186 (301)
                      +.+++.       . +|+||||||+...         ++|+..+++|+.|++++++++..    . +.++||++||...+
T Consensus       104 v~~~~~~~~~~~g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~  182 (299)
T 3t7c_A          104 MQAAVDDGVTQLGR-LDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL  182 (299)
T ss_dssp             HHHHHHHHHHHHSC-CCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHhCC-CCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhc
Confidence            666554       5 9999999996532         23456789999999999998743    2 35799999998754


Q ss_pred             cccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee----e-----c-----
Q 022216          187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII----M-----E-----  245 (301)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~----~-----~-----  245 (301)
                      ...            .....|+.+|.+.+.+.+       ..||+++.|+||++.|++......    .     .     
T Consensus       183 ~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~  250 (299)
T 3t7c_A          183 RGA------------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDF  250 (299)
T ss_dssp             SCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHH
T ss_pred             cCC------------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHH
Confidence            321            224678999999886653       358999999999999997643210    0     0     


Q ss_pred             -----cccccccCCCCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          246 -----TEDTLYEGTISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       246 -----~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                           ........+.+++|+|++++.++....  ..|+++++.++
T Consensus       251 ~~~~~~~~~~p~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG  295 (299)
T 3t7c_A          251 QVASRQMHVLPIPYVEPADISNAILFLVSDDARYITGVSLPVDGG  295 (299)
T ss_dssp             HHHHHHHSSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHhhhhcccCcCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCC
Confidence                 001111346799999999966554332  34677777664

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.94  E-value=5.5e-27  Score=200.98  Aligned_cols=206  Identities=15%  Similarity=0.086  Sum_probs=151.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCch--hhhcccc-CCCCeEEEEccCCCCh-HhHHHHh-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDK--AKTTLSK-DNPSLQIVKADVTEGS-AKLSEAI-----  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~--~~~~~~~-~~~~~~~~~~Dl~~~~-~~~~~~~-----  132 (301)
                      ++++|++|||||+||||++++++|+++|++ |++++|+...  .+++... ...++.++.+|++| . +++.+++     
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   80 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFD   80 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC-ChHHHHHHHHHHHH
Confidence            356899999999999999999999999996 8988998642  2222211 13578899999999 5 5555544     


Q ss_pred             --cCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHc----C---CCEEEEecccccccccCCCCCCcchhhcch
Q 022216          133 --GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR----G---VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~----~---~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                        ++ +|+||||||....++++..+++|+.|+.++++++.+.    +   .++||++||...+...            ..
T Consensus        81 ~~g~-id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~  147 (254)
T 1sby_A           81 QLKT-VDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI------------HQ  147 (254)
T ss_dssp             HHSC-CCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------TT
T ss_pred             hcCC-CCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC------------CC
Confidence              35 9999999998777788889999999999999998532    1   3689999999765321            22


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-cc---c--cccCCCCHHHHHHHHHHHhcC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-ED---T--LYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-~~---~--~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ...|+.+|.+.+.+.+       ..|+++++|+||++.|++......... ..   .  ...+..+++|+|++++.++..
T Consensus       148 ~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~i~~~~~~  227 (254)
T 1sby_A          148 VPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEA  227 (254)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Confidence            4678999999987654       269999999999999985322100000 00   0  011345899999999888764


Q ss_pred             CCCCCcEEEeecC
Q 022216          271 PESSYKVVEIISR  283 (301)
Q Consensus       271 ~~~~~~~~~v~~~  283 (301)
                      . ..++++++.++
T Consensus       228 ~-~~G~~~~v~gG  239 (254)
T 1sby_A          228 N-KNGAIWKLDLG  239 (254)
T ss_dssp             C-CTTCEEEEETT
T ss_pred             C-CCCCEEEEeCC
Confidence            3 46788888764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.94  E-value=2.9e-27  Score=205.16  Aligned_cols=208  Identities=14%  Similarity=0.124  Sum_probs=153.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+.+.     
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~  107 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE-AGAGTDLIERAEAI  107 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS-TTHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC-HHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999877655332   245789999999999 655555543     


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      +++|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+..            .
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------------~  175 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRP------------K  175 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------C
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCC------------C
Confidence            139999999996432        245667899999999999998    3455679999999875531            1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------ccc-cccCCCCHHHHHHHHHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDT-LYEGTISRDQVAEVAVE  266 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~-~~~~~v~~~Dva~~~~~  266 (301)
                      .....|+.+|.+.+.+.+       ..|++++.|+||.+.|++.........       ... ....+.+++|+|++++.
T Consensus       176 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~f  255 (275)
T 4imr_A          176 SVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWMGRAGRPEEMVGAALF  255 (275)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTTCSCBCGGGGHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCccCCCcCHHHHHHHHHH
Confidence            224678999999886653       358999999999999985332110000       001 22346789999999976


Q ss_pred             HhcCCC--CCCcEEEeec
Q 022216          267 ALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~  282 (301)
                      ++....  ..|+++++.+
T Consensus       256 L~s~~a~~itG~~i~vdG  273 (275)
T 4imr_A          256 LASEACSFMTGETIFLTG  273 (275)
T ss_dssp             HHSGGGTTCCSCEEEESS
T ss_pred             HcCcccCCCCCCEEEeCC
Confidence            554322  3567777765

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.94  E-value=1e-27  Score=207.16  Aligned_cols=209  Identities=20%  Similarity=0.212  Sum_probs=151.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      +.+++|++|||||+||||++++++|+++|++|++++|+.+..++...+     ....+.++.+|++| .+.+.+.+..  
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~g   84 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT-EQGCQDVIEKYP   84 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS-HHHHHHHHHHCC
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC-HHHHHHHHHhcC
Confidence            356789999999999999999999999999999999998765543321     24567889999999 7777666542  


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      ++|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+..            ..
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------~~  152 (267)
T 3t4x_A           85 KVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMP------------SQ  152 (267)
T ss_dssp             CCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSC------------CT
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccC------------CC
Confidence            39999999997543        245566899999998888876    3445679999999875522            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce---------eec----------cccccccCCCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI---------IME----------TEDTLYEGTIS  256 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~---------~~~----------~~~~~~~~~v~  256 (301)
                      ....|..+|.+.+.+.+       ..|++++.|+||.+.+++.....         ...          ........+.+
T Consensus       153 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  232 (267)
T 3t4x_A          153 EMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIR  232 (267)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCTTCSSCSCBC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCCcccccCccC
Confidence            35789999999987664       25799999999999987422110         000          00011245789


Q ss_pred             HHHHHHHHHHHhcCC--CCCCcEEEeecC
Q 022216          257 RDQVAEVAVEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~--~~~~~~~~v~~~  283 (301)
                      ++|+|++++.++...  ...|+++++.++
T Consensus       233 pedvA~~v~fL~s~~~~~itG~~i~vdGG  261 (267)
T 3t4x_A          233 PEEIAHLVTFLSSPLSSAINGSALRIDGG  261 (267)
T ss_dssp             THHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHHHcCccccCccCCeEEECCC
Confidence            999999996655422  235677777664

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.94  E-value=1.4e-26  Score=204.70  Aligned_cols=209  Identities=20%  Similarity=0.218  Sum_probs=157.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      ++||||||+|+||++++++|+++|++|+++.|+++ +...+......+++++.+|++| .+++.+++++ +|+|||+++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d-~~~l~~a~~~-~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE-HEKLVELMKK-VDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTC-HHHHHHHHTT-CSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCC-HHHHHHHHcC-CCEEEECCch
Confidence            58999999999999999999999999999999875 2221110012578999999999 8999999999 9999999985


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCCCcchhhcch-hhHHHHHHHHHHHHHHHcCC
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNPAYIFLNV-FGLTLIAKLQAEQYIRKSGI  223 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~-~~~y~~sK~~~e~~~~~~~i  223 (301)
                      .           ++.++.++++++++.+ +++||+ |+   ||.....    . .+..+ ...| .+|..+|+++++.++
T Consensus        90 ~-----------~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~~~----~-~~~~p~~~~y-~sK~~~e~~~~~~~~  148 (318)
T 2r6j_A           90 P-----------QILDQFKILEAIKVAGNIKRFLP-SD---FGVEEDR----I-NALPPFEALI-ERKRMIRRAIEEANI  148 (318)
T ss_dssp             G-----------GSTTHHHHHHHHHHHCCCCEEEC-SC---CSSCTTT----C-CCCHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred             h-----------hhHHHHHHHHHHHhcCCCCEEEe-ec---cccCccc----c-cCCCCcchhH-HHHHHHHHHHHhcCC
Confidence            3           1567899999999998 999985 33   4432111    1 11122 3567 999999999999999


Q ss_pred             cEEEEecCcccCCC---------CCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHH
Q 022216          224 NYTIIRPGGLRNEP---------PTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDL  294 (301)
Q Consensus       224 ~~~~irpg~v~~~~---------~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~  294 (301)
                      +++++||+.+++..         ..+.+...........+++++|+|++++.++..+...++++++.+.  ++.+|+.|+
T Consensus       149 ~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~--~~~~s~~e~  226 (318)
T 2r6j_A          149 PYTYVSANCFASYFINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPS--TNIITQLEL  226 (318)
T ss_dssp             CBEEEECCEEHHHHHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGGTTEEEECCCG--GGEEEHHHH
T ss_pred             CeEEEEcceehhhhhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCccccCeEEEecCC--CCccCHHHH
Confidence            99999999876531         1222222222333446899999999999999877656777887642  378999999


Q ss_pred             HHHhhc
Q 022216          295 FGSIKQ  300 (301)
Q Consensus       295 ~~~i~~  300 (301)
                      ++.+++
T Consensus       227 ~~~~~~  232 (318)
T 2r6j_A          227 ISRWEK  232 (318)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.94  E-value=1.3e-26  Score=197.21  Aligned_cols=188  Identities=15%  Similarity=0.174  Sum_probs=145.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc--
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG--  133 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~--  133 (301)
                      +|+||||||+|+||++++++|+++|+       +|++++|+.++.+++..   ....++.++.+|++| .+++.+++.  
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC-HHHHHHHHHHH
Confidence            68999999999999999999999999       99999998766554322   124578999999999 777766654  


Q ss_pred             -----CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCc
Q 022216          134 -----DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       134 -----~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                           + +|+||||||....        ++++..+++|+.++.++++++.    +.+.++||++||...+...       
T Consensus        81 ~~~~g~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-------  152 (244)
T 2bd0_A           81 VERYGH-IDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF-------  152 (244)
T ss_dssp             HHHTSC-CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred             HHhCCC-CCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCC-------
Confidence                 5 9999999997542        2355678999999999999874    3456899999999765321       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhc
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                           .+...|+.+|.+.+.+.+       ..|+++++|+||+++|++.....   ...  ...+++++|+|++++.++.
T Consensus       153 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~--~~~~~~~~dva~~~~~l~~  222 (244)
T 2bd0_A          153 -----RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD---DEM--QALMMMPEDIAAPVVQAYL  222 (244)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC---STT--GGGSBCHHHHHHHHHHHHT
T ss_pred             -----CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcc---ccc--cccCCCHHHHHHHHHHHHh
Confidence                 234679999999987653       36899999999999998754321   111  1257899999999988886


Q ss_pred             CCC
Q 022216          270 HPE  272 (301)
Q Consensus       270 ~~~  272 (301)
                      .+.
T Consensus       223 ~~~  225 (244)
T 2bd0_A          223 QPS  225 (244)
T ss_dssp             SCT
T ss_pred             CCc
Confidence            554

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.94  E-value=1.9e-26  Score=199.37  Aligned_cols=207  Identities=17%  Similarity=0.127  Sum_probs=149.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhcc---ccCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.. ..++..   .....++.++.+|++| .+++.+++.     
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVAD-FESCERCAEKVLAD  100 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999885543 322211   1245689999999999 766665554     


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        . +|+||||||+...        ++++..+++|+.+++++++++.    +.+.++||++||...+..           
T Consensus       101 ~g~-id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  168 (269)
T 3gk3_A          101 FGK-VDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRG-----------  168 (269)
T ss_dssp             HSC-CSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC-----------
T ss_pred             cCC-CCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccC-----------
Confidence              5 9999999997542        2345678999999999999874    345679999999875422           


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                       ......|+.+|.+.+.+.+       ..|++++.|+||++.+++........     ........+.+++|+|++++.+
T Consensus       169 -~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L  247 (269)
T 3gk3_A          169 -AFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPVGRLGRPDEVAALIAFL  247 (269)
T ss_dssp             -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------CCSGGGCTTSSCBCHHHHHHHHHHH
T ss_pred             -CCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHHHHHhhhcCCcCCccCHHHHHHHHHHH
Confidence             1235789999998886653       35899999999999998754321110     1111223466899999999766


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..|+++++.++
T Consensus       248 ~s~~~~~itG~~i~vdgG  265 (269)
T 3gk3_A          248 CSDDAGFVTGADLAINGG  265 (269)
T ss_dssp             TSTTCTTCCSCEEEESTT
T ss_pred             hCCCcCCeeCcEEEECCC
Confidence            65433  45778888764

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.94  E-value=9.6e-27  Score=196.58  Aligned_cols=199  Identities=15%  Similarity=0.086  Sum_probs=145.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC---CCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD---DSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---~~d~Vi~~  142 (301)
                      +|+||||||+||||++++++|+++|++|++++|+.+++++.......++.++.+|++| .+++.+.+..   ..|+||||
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~d~lv~~   79 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLAS-HQEVEQLFEQLDSIPSTVVHS   79 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTC-HHHHHHHHHSCSSCCSEEEEC
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCC-HHHHHHHHHHHhhcCCEEEEe
Confidence            3689999999999999999999999999999999888776655455788999999999 8888888876   24999999


Q ss_pred             cCCCCC--------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHH
Q 022216          143 TGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       143 Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (301)
                      ||....        ++|+..+++|+.|++++++++.+.   ..++||++||...+...            .....|+.+|
T Consensus        80 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~~Y~asK  147 (230)
T 3guy_A           80 AGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPK------------AQESTYCAVK  147 (230)
T ss_dssp             CCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCC------------TTCHHHHHHH
T ss_pred             CCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCC------------CCCchhHHHH
Confidence            996542        235567899999999999998543   12399999998755321            2246799999


Q ss_pred             HHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEee
Q 022216          212 LQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEII  281 (301)
Q Consensus       212 ~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~  281 (301)
                      .+.+.+.+       ..|++++.|+||.+.+++......    ......+.+++|+|++++.++.++...+.+....
T Consensus       148 aa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~~~~~~~~~dvA~~i~~l~~~~~~~~itg~~~  220 (230)
T 3guy_A          148 WAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSGK----SLDTSSFMSAEDAALMIHGALANIGNGYVSDITV  220 (230)
T ss_dssp             HHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------CCCHHHHHHHHHHHCCEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhcCC----CCCcccCCCHHHHHHHHHHHHhCcCCCCccceee
Confidence            99987654       258999999999999986543211    1123457899999999988887666554444333

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.94  E-value=8.2e-27  Score=200.21  Aligned_cols=204  Identities=18%  Similarity=0.139  Sum_probs=149.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+.++.++...   ....++.++.+|++| .+++.+++.       + 
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~-   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGG-   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTC-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC-
Confidence            5899999999999999999999999999999998766554322   124578899999999 777776664       5 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcchhhcc
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++.+    .+ .++||++||...+...            .
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~  147 (256)
T 1geg_A           80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN------------P  147 (256)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC------------T
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC------------C
Confidence            9999999996532        23456789999999998888743    34 5799999998654211            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce----e-----ec------cccccccCCCCHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI----I-----ME------TEDTLYEGTISRDQV  260 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~----~-----~~------~~~~~~~~~v~~~Dv  260 (301)
                      ....|..+|.+.+.+.+       ..|+++++|+||++.|++.....    .     ..      ........+.+++|+
T Consensus       148 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dv  227 (256)
T 1geg_A          148 ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDV  227 (256)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCCCCcCHHHH
Confidence            24678999999886653       36899999999999997532110    0     00      001112346899999


Q ss_pred             HHHHHHHhcCCC--CCCcEEEeecC
Q 022216          261 AEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       261 a~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      |++++.++..+.  ..++++.+.++
T Consensus       228 A~~v~~l~s~~~~~~tG~~i~vdGG  252 (256)
T 1geg_A          228 AACVSYLASPDSDYMTGQSLLIDGG  252 (256)
T ss_dssp             HHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             HHHHHHHhCccccCCCCCEEEeCCC
Confidence            999977665432  35677777664

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.94  E-value=2.1e-27  Score=205.07  Aligned_cols=200  Identities=17%  Similarity=0.126  Sum_probs=146.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-------cC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GD  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~  134 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+....        ...+.+|++| .+++.+.+       ++
T Consensus        24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~--------~~~~~~Dv~~-~~~~~~~~~~~~~~~g~   94 (266)
T 3uxy_A           24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA--------DLHLPGDLRE-AAYADGLPGAVAAGLGR   94 (266)
T ss_dssp             --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC--------SEECCCCTTS-HHHHHHHHHHHHHHHSC
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh--------hhccCcCCCC-HHHHHHHHHHHHHhcCC
Confidence            35679999999999999999999999999999999998765432        1345799999 65555443       45


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+..            ..
T Consensus        95 -iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~  161 (266)
T 3uxy_A           95 -LDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRP------------GP  161 (266)
T ss_dssp             -CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBC------------CT
T ss_pred             -CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCC------------CC
Confidence             9999999997542        345667889999999999998    5556689999999875421            12


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----------ccccccccCCCCHHHHHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----------ETEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----------~~~~~~~~~~v~~~Dva~~~  264 (301)
                      ....|+.+|.+.+.+.+       ..|+++++|+||++.|++.......           .........+.+++|+|+++
T Consensus       162 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v  241 (266)
T 3uxy_A          162 GHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVV  241 (266)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence            35789999999987653       3589999999999999853221100           00111223467999999999


Q ss_pred             HHHhcCCC--CCCcEEEeecC
Q 022216          265 VEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +.++..+.  ..|+++++.++
T Consensus       242 ~~L~s~~~~~itG~~i~vdGG  262 (266)
T 3uxy_A          242 LFLASDAARYLCGSLVEVNGG  262 (266)
T ss_dssp             HHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHhCchhcCCcCCEEEECcC
Confidence            76665432  34777877764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.94  E-value=1.4e-27  Score=204.75  Aligned_cols=208  Identities=15%  Similarity=0.094  Sum_probs=152.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-Cchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      ++++|+||||||+||||++++++|+++|++|++++|+ +++.++...   ....++.++.+|++| .+++.+++.     
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   82 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT-SEACQQLVDEFVAK   82 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999998 665544321   124578999999999 777777665     


Q ss_pred             --CCCCEEEEccCC-CCC--------CCCCCceeeehHHHHHHHHHHHH----cC--C---CEEEEecccccccccCCCC
Q 022216          134 --DDSEAVVCATGF-QPG--------WDLFAPWKVDNFGTVNLVEACRK----RG--V---NRFILISSILVNGAAMGQI  193 (301)
Q Consensus       134 --~~~d~Vi~~Ag~-~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~--~---~~iV~~SS~~~~~~~~~~~  193 (301)
                        + +|+||||||. ...        ++++..+++|+.++.++++++.+    .+  .   ++||++||...+..     
T Consensus        83 ~g~-id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----  156 (258)
T 3afn_B           83 FGG-IDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG-----  156 (258)
T ss_dssp             HSS-CSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC-----
T ss_pred             cCC-CCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC-----
Confidence              6 9999999996 322        12455779999999999987732    22  2   69999999875431     


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce---ee-ccccccccCCCCHHHHHH
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI---IM-ETEDTLYEGTISRDQVAE  262 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~---~~-~~~~~~~~~~v~~~Dva~  262 (301)
                            +..+...|+.+|.+.|.+.+       ..|+++++|+||++.|++.....   .. .........+++++|+|+
T Consensus       157 ------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~  230 (258)
T 3afn_B          157 ------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPMGRFGTAEEMAP  230 (258)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTCTTCSCBCGGGTHH
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccccCHHHHHHHhccCCCCcCCCHHHHHH
Confidence                  11235679999999987664       24899999999999998654320   00 001112235789999999


Q ss_pred             HHHHHhcCCC---CCCcEEEeecC
Q 022216          263 VAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       263 ~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      +++.++..+.   ..++++++.++
T Consensus       231 ~~~~l~~~~~~~~~~G~~~~v~gg  254 (258)
T 3afn_B          231 AFLFFASHLASGYITGQVLDINGG  254 (258)
T ss_dssp             HHHHHHCHHHHTTCCSEEEEESTT
T ss_pred             HHHHHhCcchhccccCCEEeECCC
Confidence            9987776432   35788888774

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.94  E-value=5.7e-27  Score=202.77  Aligned_cols=207  Identities=16%  Similarity=0.183  Sum_probs=153.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      +.+++|+||||||+|+||++++++|+++|++|++++| +.+..++...   ....++.++.+|++| .+++.+++.    
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   95 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVS   95 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999 5444433221   134678899999999 777776665    


Q ss_pred             ---CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccc-cccCCCCCCcch
Q 022216          134 ---DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVN-GAAMGQILNPAY  198 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~-~~~~~~~~~~~~  198 (301)
                         + +|+||||||....        ++++..+++|+.++.++++++.+.   + ++||++||...+ ...         
T Consensus        96 ~~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~---------  164 (274)
T 1ja9_A           96 HFGG-LDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGI---------  164 (274)
T ss_dssp             HHSC-EEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSC---------
T ss_pred             HcCC-CCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCC---------
Confidence               6 9999999997542        134567899999999999998764   4 699999999765 321         


Q ss_pred             hhcchhhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCC-----------cee-ec-----cccccccCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTG-----------NII-ME-----TEDTLYEGT  254 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~-----------~~~-~~-----~~~~~~~~~  254 (301)
                         .....|+.+|.+.|.+.+.       .|+++++|+||.+.+++...           ... ..     ........+
T Consensus       165 ---~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (274)
T 1ja9_A          165 ---PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRI  241 (274)
T ss_dssp             ---CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSC
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcCCCCCc
Confidence               1246799999999876642       48999999999999875321           000 00     001122357


Q ss_pred             CCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          255 ISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       255 v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++++|+|++++.++..+.  ..++++++.++
T Consensus       242 ~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG  272 (274)
T 1ja9_A          242 GYPADIGRAVSALCQEESEWINGQVIKLTGG  272 (274)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence            899999999988776543  35788988764

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.94  E-value=9.3e-27  Score=202.60  Aligned_cols=207  Identities=12%  Similarity=0.111  Sum_probs=150.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-------cCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~~  135 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+++++.......++.++.+|++| .+++.+.+       +. 
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~-   79 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRS-LQDQKRAAERCLAAFGK-   79 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcCC-
Confidence            3578999999999999999999999999999999999887766554455789999999999 66555544       45 


Q ss_pred             CCEEEEccCCCCCC-------------CCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchh
Q 022216          136 SEAVVCATGFQPGW-------------DLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~~-------------~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                      +|+||||||+....             +|+..+++|+.|++++++++.+.   +.++||++||...+...          
T Consensus        80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  149 (281)
T 3zv4_A           80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPN----------  149 (281)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSS----------
T ss_pred             CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCC----------
Confidence            99999999974321             14556789999999999998432   23799999998754221          


Q ss_pred             hcchhhHHHHHHHHHHHHHHH------cCCcEEEEecCcccCCCCCCcee------ec--------cccccccCCCCHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIRK------SGINYTIIRPGGLRNEPPTGNII------ME--------TEDTLYEGTISRDQ  259 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~------~~--------~~~~~~~~~v~~~D  259 (301)
                        .....|+.+|.+.+.+.+.      .+|+++.|+||++.+++......      ..        ........+.+++|
T Consensus       150 --~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ped  227 (281)
T 3zv4_A          150 --GGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEE  227 (281)
T ss_dssp             --SSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTTSSCCCGGG
T ss_pred             --CCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCCCCCCCHHH
Confidence              2246789999999876542      24999999999999986432110      00        00112234678999


Q ss_pred             HHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          260 VAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       260 va~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      +|++++.++.++.   ..|+++++.++
T Consensus       228 vA~~v~fL~s~~~~~~itG~~i~vdGG  254 (281)
T 3zv4_A          228 YTGAYVFFATRGDSLPATGALLNYDGG  254 (281)
T ss_dssp             GSHHHHHHHSTTTSTTCSSCEEEESSS
T ss_pred             HHHHHHHhhcccccccccCcEEEECCC
Confidence            9999977665344   45677777664

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.94  E-value=7e-27  Score=200.62  Aligned_cols=206  Identities=15%  Similarity=0.182  Sum_probs=146.1

Q ss_pred             hcccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---c-CCCCeEEEEccCCCChHhHHHH----
Q 022216           62 VSVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---K-DNPSLQIVKADVTEGSAKLSEA----  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~-~~~~~~~~~~Dl~~~~~~~~~~----  131 (301)
                      +++++|++|||||+|  |||++++++|+++|++|++.+|+.+.+++...   + ...++.++++|++| ++++.+.    
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~   80 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS-DEEVINGFEQI   80 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC-HHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC-HHHHHHHHHHH
Confidence            467899999999876  99999999999999999999999776554321   1 34578999999999 6555544    


Q ss_pred             ---hcCCCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCC
Q 022216          132 ---IGDDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       132 ---~~~~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~  194 (301)
                         ++. +|++|||||+...            ++|...+++|+.+.+.+++++...  +.++||++||....-   +   
T Consensus        81 ~~~~G~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~---~---  153 (256)
T 4fs3_A           81 GKDVGN-IDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF---A---  153 (256)
T ss_dssp             HHHHCC-CSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS---C---
T ss_pred             HHHhCC-CCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc---C---
Confidence               445 9999999996432            123345688999999998888543  236999999986321   1   


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHH
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVA  261 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva  261 (301)
                            ...+..|..+|.+.+.+.+       .+||++|.|.||++.|++........      ....+...+..++|+|
T Consensus       154 ------~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~peevA  227 (256)
T 4fs3_A          154 ------VQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKRNVDQVEVG  227 (256)
T ss_dssp             ------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHH
T ss_pred             ------cccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCCCcCHHHHH
Confidence                  1224678888888775543       47999999999999998654321100      0111223466899999


Q ss_pred             HHHHHHhcCCCCCC---cEEEeec
Q 022216          262 EVAVEALLHPESSY---KVVEIIS  282 (301)
Q Consensus       262 ~~~~~~l~~~~~~~---~~~~v~~  282 (301)
                      ++++ +|.++.+.+   +++.+.+
T Consensus       228 ~~v~-fL~Sd~a~~iTG~~i~VDG  250 (256)
T 4fs3_A          228 KTAA-YLLSDLSSGVTGENIHVDS  250 (256)
T ss_dssp             HHHH-HHHSGGGTTCCSCEEEEST
T ss_pred             HHHH-HHhCchhcCccCCEEEECc
Confidence            9984 666666554   4444443

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.94  E-value=1.1e-26  Score=200.29  Aligned_cols=208  Identities=18%  Similarity=0.178  Sum_probs=150.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh----ccccCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      +.+|++|||||+|+||++++++|+++|++|++++|+.....+    .......++.++.+|++| .+++.+++.      
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTK-KEDLHKIVEEAMSHF   83 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHh
Confidence            357899999999999999999999999999999887654322    222234679999999999 777766654      


Q ss_pred             -CCCCEEEEccCC--CCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          134 -DDSEAVVCATGF--QPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 -~~~d~Vi~~Ag~--~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                       . +|+||||||+  ...        ++++..+++|+.|++++++++    ++.+.++||++||...++..         
T Consensus        84 g~-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~---------  153 (264)
T 3i4f_A           84 GK-IDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP---------  153 (264)
T ss_dssp             SC-CCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC---------
T ss_pred             CC-CCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC---------
Confidence             5 9999999993  221        235567899999999999998    55666899999998543211         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                       +..+...|+.+|.+.+.+.+       ..|+++++|+||++.|++.......    .........+.+++|+|++++.+
T Consensus       154 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l  232 (264)
T 3i4f_A          154 -GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHNTPIGRSGTGEDIARTISFL  232 (264)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHHHHHHC--------CCCCHHHHHHHHHHH
T ss_pred             -CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence             11234678999999886653       3689999999999999875443210    01112223467999999999777


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..|+++++.++
T Consensus       233 ~s~~~~~itG~~i~vdGG  250 (264)
T 3i4f_A          233 CEDDSDMITGTIIEVTGA  250 (264)
T ss_dssp             HSGGGTTCCSCEEEESCS
T ss_pred             cCcccCCCCCcEEEEcCc
Confidence            75432  35788888775

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.94  E-value=1.4e-26  Score=197.74  Aligned_cols=195  Identities=17%  Similarity=0.231  Sum_probs=143.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG------  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~------  133 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++.      
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD-RQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence            3568999999999999999999999999999999998776554332   124578999999999 766665553      


Q ss_pred             -CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          134 -DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                       + +|+||||||....        ++|+..+++|+.|++++++++.    +.+ ++||++||...+...           
T Consensus        83 g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-----------  149 (247)
T 2jah_A           83 GG-LDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNV-----------  149 (247)
T ss_dssp             SC-CSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCC-----------
T ss_pred             CC-CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCC-----------
Confidence             5 9999999996532        2345578999999999999874    345 899999998754321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc---ccccccC--CCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET---EDTLYEG--TISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~---~~~~~~~--~v~~~Dva~~~~~~l  268 (301)
                       .....|+.+|.+.+.+.+       ..|+++++|+||++.|++.........   .......  +.+++|+|++++.++
T Consensus       150 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~  228 (247)
T 2jah_A          150 -RNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAV  228 (247)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHHTTTSCCBCHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHhcccccCCCCHHHHHHHHHHHh
Confidence             224678899988876543       369999999999999986432110000   0000012  389999999998777


Q ss_pred             cCCC
Q 022216          269 LHPE  272 (301)
Q Consensus       269 ~~~~  272 (301)
                      ..+.
T Consensus       229 s~~~  232 (247)
T 2jah_A          229 TAPH  232 (247)
T ss_dssp             HSCT
T ss_pred             CCCc
Confidence            6543

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.94  E-value=1.5e-26  Score=198.92  Aligned_cols=207  Identities=15%  Similarity=0.093  Sum_probs=150.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe-CCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR-DLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r-~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      ++++|+||||||+|+||++++++|+++|++|++++| +.+..++...   ....++.++.+|++| .+++.+.+.     
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~   82 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKE   82 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999 6554433221   134578899999999 776666654     


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcch
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        + +|+||||||....        ++++..+++|+.++.++++++.    +.+ .++||++||...+..          
T Consensus        83 ~g~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~----------  151 (261)
T 1gee_A           83 FGK-LDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP----------  151 (261)
T ss_dssp             HSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC----------
T ss_pred             cCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCC----------
Confidence              5 9999999996542        2345678999999999888874    334 579999999865421          


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~  265 (301)
                        ..+...|+.+|.+.+.+.+       ..|+++++|+||++.|++........      ........+.+++|+|++++
T Consensus       152 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  229 (261)
T 1gee_A          152 --WPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAA  229 (261)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHH
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence              1235789999998886653       25899999999999998643211000      00111234689999999998


Q ss_pred             HHhcCC--CCCCcEEEeecC
Q 022216          266 EALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~--~~~~~~~~v~~~  283 (301)
                      .++..+  ...++++++.++
T Consensus       230 ~l~~~~~~~~~G~~~~v~gg  249 (261)
T 1gee_A          230 WLASSEASYVTGITLFADGG  249 (261)
T ss_dssp             HHHSGGGTTCCSCEEEESTT
T ss_pred             HHhCccccCCCCcEEEEcCC
Confidence            777533  235778887764

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.94  E-value=2.8e-27  Score=203.74  Aligned_cols=216  Identities=15%  Similarity=0.124  Sum_probs=154.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      +++++|+||||||+|+||++++++|+++|++|++++|+..+..+...    ....++.++.+|++| .+++.+++.+   
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~   88 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDA   88 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC-HHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999997655432211    124578999999999 7666655532   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cC-CCEEEEecccccccccCCCCCCcch
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RG-VNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~-~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         ++|+||||||....        ++++..+++|+.+++++++++.+    .+ .++||++||...+......     .
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-----~  163 (265)
T 1h5q_A           89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS-----L  163 (265)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-----T
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc-----c
Confidence               39999999997542        23445689999999999998843    23 3799999998765322110     1


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---ec-cccccccCCCCHHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---ME-TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~~-~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      .+..+...|+.+|.+.+.+.+       ..|+++++|+||++.|++......   .. ........+.+++|+|++++.+
T Consensus       164 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l  243 (265)
T 1h5q_A          164 NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAILL  243 (265)
T ss_dssp             TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCGGGGHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccchhHHHHHHhcCcccCCCCHHHHHHHHHhh
Confidence            122345789999999987664       258999999999999986443210   00 0011123478999999999877


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..++++++.++
T Consensus       244 ~~~~~~~~~G~~~~v~gG  261 (265)
T 1h5q_A          244 LSDHATYMTGGEYFIDGG  261 (265)
T ss_dssp             HSGGGTTCCSCEEEECTT
T ss_pred             ccCchhcCcCcEEEecCC
Confidence            75432  46788888774

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.94  E-value=2.3e-26  Score=199.06  Aligned_cols=209  Identities=14%  Similarity=0.110  Sum_probs=151.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh----ccccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      +++++|+||||||+||||++++++|+++|++|++++|+..+..+    .......++.++.+|++| .+++.+.+..   
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~  103 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS-ESDFIEAIQTIVQ  103 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999996543322    122245689999999999 7666665541   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                         ++|+||||||+...        ++++..+++|+.|++++++++.    +.+.++||++||...+..           
T Consensus       104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  172 (271)
T 4iin_A          104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERG-----------  172 (271)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC-----------
T ss_pred             hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCC-----------
Confidence               39999999997543        2455678999999999888873    345679999999875421           


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHHh
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       ......|+.+|.+.+.+.+       ..|++++.|+||.+.+++.......   . ........+.+++|+|++++.++
T Consensus       173 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~i~~l~  251 (271)
T 4iin_A          173 -NMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAKEVAEAVAFLL  251 (271)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC------------CGGGCTTCSCBCHHHHHHHHHHHH
T ss_pred             -CCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHHHHHHHHhcCCcCCCcCHHHHHHHHHHHh
Confidence             1235789999999987653       2689999999999999865432110   0 11112234679999999997766


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      ..+.  ..|+++++.++
T Consensus       252 s~~~~~itG~~i~vdGG  268 (271)
T 4iin_A          252 SDHSSYITGETLKVNGG  268 (271)
T ss_dssp             SGGGTTCCSCEEEESTT
T ss_pred             CCCcCCCcCCEEEeCCC
Confidence            5432  45778887764

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.7e-26  Score=200.97  Aligned_cols=206  Identities=17%  Similarity=0.110  Sum_probs=143.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+.+..++...+    ....+.++.+|++| .+++.+++..   
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  107 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD-PDQVAALFAAVRA  107 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC-HHHHHHHHHHHHH
Confidence            356799999999999999999999999999999999998765543321    12335899999999 7666655432   


Q ss_pred             ---CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcC--CCEEEEecccccccccCCCCCCc
Q 022216          135 ---DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRG--VNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~--~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                         ++|+||||||....         ++|+..+++|+.|++++++++.    +.+  .++||++||...+..        
T Consensus       108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~--------  179 (281)
T 4dry_A          108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP--------  179 (281)
T ss_dssp             HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC--------
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC--------
Confidence               39999999997432         2455678999999999988873    332  469999999875421        


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---eccccccccCCCCHHHHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---METEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                          ......|+.+|.+.+.+.+       ..||+++.|+||++.+++......   ..........+.+++|+|++++.
T Consensus       180 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~f  255 (281)
T 4dry_A          180 ----RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTGVLQANGEVAAEPTIPIEHIAEAVVY  255 (281)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------CEEECTTSCEEECCCBCHHHHHHHHHH
T ss_pred             ----CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcchhhhhhhcccccCCCCHHHHHHHHHH
Confidence                1235778999999886653       368999999999999987543211   11111223357899999999988


Q ss_pred             HhcCCCCCCcEEEee
Q 022216          267 ALLHPESSYKVVEII  281 (301)
Q Consensus       267 ~l~~~~~~~~~~~v~  281 (301)
                      ++..+.. ..+.++.
T Consensus       256 L~s~~~~-~~i~~~~  269 (281)
T 4dry_A          256 MASLPLS-ANVLTMT  269 (281)
T ss_dssp             HHHSCTT-EEEEEEE
T ss_pred             HhCCCcc-CccccEE
Confidence            8777754 3344433

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.94  E-value=1.4e-26  Score=199.66  Aligned_cols=199  Identities=13%  Similarity=0.092  Sum_probs=148.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.++        ..++.++.+|++| .+++.+++.       + 
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~-   74 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------EAKYDHIECDVTN-PDQVKASIDHIFKEYGS-   74 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------SCSSEEEECCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------CCceEEEEecCCC-HHHHHHHHHHHHHHcCC-
Confidence            4578999999999999999999999999999999998654        2568899999999 776666554       5 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....        ++|+..+++|+.|++++++++.+    .+.++||++||...+...            ..
T Consensus        75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~  142 (264)
T 2dtx_A           75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIIT------------KN  142 (264)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCC------------TT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCC------------CC
Confidence            9999999996532        23556789999999999998853    356899999998765321            23


Q ss_pred             hhHHHHHHHHHHHHHHH----cC--CcEEEEecCcccCCCCCCce--------------ee-ccccccccCCCCHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIRK----SG--INYTIIRPGGLRNEPPTGNI--------------IM-ETEDTLYEGTISRDQVAE  262 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~~----~~--i~~~~irpg~v~~~~~~~~~--------------~~-~~~~~~~~~~v~~~Dva~  262 (301)
                      ...|+.+|.+.+.+.+.    .+  +++++|+||++.|++.....              .. .........+.+++|+|+
T Consensus       143 ~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~  222 (264)
T 2dtx_A          143 ASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVAS  222 (264)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHSTTSSCBCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcCCCCCCcCHHHHHH
Confidence            46799999999876642    22  99999999999987532110              00 000112234789999999


Q ss_pred             HHHHHhcCCC--CCCcEEEeecC
Q 022216          263 VAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       263 ~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++.++..+.  ..++++++.++
T Consensus       223 ~v~~l~s~~~~~~tG~~i~vdGG  245 (264)
T 2dtx_A          223 AVAFLASREASFITGTCLYVDGG  245 (264)
T ss_dssp             HHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHhCchhcCCCCcEEEECCC
Confidence            9977775432  45777877664

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.94  E-value=6.5e-27  Score=207.01  Aligned_cols=206  Identities=16%  Similarity=0.155  Sum_probs=148.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC------------chhhhc---cccCCCCeEEEEccCCCChHh
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL------------DKAKTT---LSKDNPSLQIVKADVTEGSAK  127 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~------------~~~~~~---~~~~~~~~~~~~~Dl~~~~~~  127 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.            +.+++.   ......++.++.+|++| .++
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~  121 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD-LAS  121 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence            46789999999999999999999999999999998762            222221   11245689999999999 766


Q ss_pred             HHHHhc-------CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEeccccccc
Q 022216          128 LSEAIG-------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNG  187 (301)
Q Consensus       128 ~~~~~~-------~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~  187 (301)
                      +.+.+.       . +|+||||||+...        ++|+..+++|+.|++++++++.    +.+ .++||++||...+.
T Consensus       122 v~~~~~~~~~~~g~-iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~  200 (317)
T 3oec_A          122 LQAVVDEALAEFGH-IDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR  200 (317)
T ss_dssp             HHHHHHHHHHHHSC-CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred             HHHHHHHHHHHcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence            666554       5 9999999997542        2455678999999999999883    333 46899999987543


Q ss_pred             ccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce------------e-----
Q 022216          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI------------I-----  243 (301)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~------------~-----  243 (301)
                      ..            .....|+.+|.+.+.+.+       ..||+++.|+||++.|++.....            .     
T Consensus       201 ~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  268 (317)
T 3oec_A          201 GA------------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAA  268 (317)
T ss_dssp             CC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHH
T ss_pred             CC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHH
Confidence            21            224678999999886653       35899999999999997532110            0     


Q ss_pred             --eccccccccCCCCHHHHHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          244 --METEDTLYEGTISRDQVAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       244 --~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                        ..........+.+++|+|++++.++ ++.   ..|+++++.++
T Consensus       269 ~~~~~~~~~p~~~~~pedvA~av~fL~-s~~a~~itG~~i~vdGG  312 (317)
T 3oec_A          269 ELFSQLTLLPIPWVEPEDVSNAVAWLA-SDEARYIHGAAIPVDGG  312 (317)
T ss_dssp             HHHTTTCSSSSSSBCHHHHHHHHHHHT-SGGGTTCCSCEEEESTT
T ss_pred             HHHhhhccCCCCCCCHHHHHHHHHHHc-CCcccCCCCCEEEECcc
Confidence              0011111245789999999996554 443   34677777664

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.94  E-value=2.1e-26  Score=196.83  Aligned_cols=203  Identities=19%  Similarity=0.186  Sum_probs=145.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAVV  140 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~Vi  140 (301)
                      |++|||||+||||++++++|+++|++|++++|+.+++++...+...++.++.+|++| .+++.+.+..      ++|+||
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~lv   79 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWCNIDILV   79 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHTSCTTTCCCCEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCCEEE
Confidence            689999999999999999999999999999998876655443233578999999999 8888877652      499999


Q ss_pred             EccCCCC-C--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          141 CATGFQP-G--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       141 ~~Ag~~~-~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      ||||+.. .        ++|+..+++|+.|++++++++.    +.+.++||++||...+..            ......|
T Consensus        80 nnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------~~~~~~Y  147 (248)
T 3asu_A           80 NNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP------------YAGGNVY  147 (248)
T ss_dssp             ECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------------CTTCHHH
T ss_pred             ECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccC------------CCCCchH
Confidence            9999652 1        2355678999999999999884    456689999999875421            1224679


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCccc-CCCCCCceeecc--cccc--ccCCCCHHHHHHHHHHHhcCCC-CC
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLR-NEPPTGNIIMET--EDTL--YEGTISRDQVAEVAVEALLHPE-SS  274 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~-~~~~~~~~~~~~--~~~~--~~~~v~~~Dva~~~~~~l~~~~-~~  274 (301)
                      +.+|.+.+.+.+       ..|+++++|+||++. +++.........  ....  ...+++++|+|++++.++..+. ..
T Consensus       148 ~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~l~s~~~~~~  227 (248)
T 3asu_A          148 GATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVN  227 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC----------------------CCBCHHHHHHHHHHHHHSCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHHHHHHhccCCCCHHHHHHHHHHHhcCCccce
Confidence            999999987654       258999999999999 776432110000  0010  1135799999999987776543 34


Q ss_pred             CcEEEeec
Q 022216          275 YKVVEIIS  282 (301)
Q Consensus       275 ~~~~~v~~  282 (301)
                      ++.+.+..
T Consensus       228 g~~i~v~~  235 (248)
T 3asu_A          228 INTLEMMP  235 (248)
T ss_dssp             CCEEEECC
T ss_pred             eeEEEEcc
Confidence            55566554

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.94  E-value=2.3e-26  Score=194.62  Aligned_cols=185  Identities=16%  Similarity=0.154  Sum_probs=133.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CCCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DDSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~~d~  138 (301)
                      +|+||||||+|+||++++++|+++|++|++++|+.++.++..... .++.++.+|++| .+++.+.+.       + +|+
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~-id~   81 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL-EGALPLPGDVRE-EGDWARAVAAMEEAFGE-LSA   81 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-TTCEEEECCTTC-HHHHHHHHHHHHHHHSC-CCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hhceEEEecCCC-HHHHHHHHHHHHHHcCC-CCE
Confidence            678999999999999999999999999999999877665543322 378899999999 766665553       5 999


Q ss_pred             EEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          139 VVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       139 Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      ||||||....        +++...+++|+.+++++++++    ++.+.++||++||...+...            .....
T Consensus        82 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~~  149 (234)
T 2ehd_A           82 LVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPF------------KGGAA  149 (234)
T ss_dssp             EEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCC------------TTCHH
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCC------------CCCch
Confidence            9999996532        234567899999998776665    45567899999998755321            22467


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      |+.+|.+.+.+.+       ..|+++++|+||++.+++.....     .. + .+++++|+|++++.++..+.
T Consensus       150 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-----~~-~-~~~~~~dvA~~~~~l~~~~~  215 (234)
T 2ehd_A          150 YNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNTP-----GQ-A-WKLKPEDVAQAVLFALEMPG  215 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----------------------CCHHHHHHHHHHHHHSCC
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccccc-----cc-c-CCCCHHHHHHHHHHHhCCCc
Confidence            8999998876543       36899999999999988644210     11 1 15899999999988887654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.94  E-value=2.9e-26  Score=196.02  Aligned_cols=203  Identities=15%  Similarity=0.191  Sum_probs=147.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+++|+||||||+||||++++++|+++|++|++++|+.+..+++     ..+.++ +|+.+..+.+.+.+.+ +|+|||
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~-----~~~~~~-~D~~~~~~~~~~~~~~-iD~lv~   87 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-----GHRYVV-CDLRKDLDLLFEKVKE-VDILVL   87 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-----CSEEEE-CCTTTCHHHHHHHSCC-CSEEEE
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh-----CCeEEE-eeHHHHHHHHHHHhcC-CCEEEE
Confidence            456799999999999999999999999999999999987444332     256777 9994334555555666 999999


Q ss_pred             ccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          142 ATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       142 ~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      |||....        ++|+..+++|+.|++++++++    ++.+.++||++||...|...            .....|+.
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~~Y~~  155 (249)
T 1o5i_A           88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI------------ENLYTSNS  155 (249)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------TTBHHHHH
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC------------CCCchHHH
Confidence            9996542        235567899999988776665    45567899999999866421            22467889


Q ss_pred             HHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---e--ccccccccCCCCHHHHHHHHHHHhcCCC--CCC
Q 022216          210 AKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---M--ETEDTLYEGTISRDQVAEVAVEALLHPE--SSY  275 (301)
Q Consensus       210 sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~  275 (301)
                      +|.+.+.+.+       ..|+++++|+||++.|++......   .  .........+.+++|+|++++.++..+.  ..+
T Consensus       156 sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~s~~~~~~tG  235 (249)
T 1o5i_A          156 ARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTG  235 (249)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCS
T ss_pred             HHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchhhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCCCC
Confidence            9998886553       369999999999999986422100   0  0001112346799999999977775432  347


Q ss_pred             cEEEeecC
Q 022216          276 KVVEIISR  283 (301)
Q Consensus       276 ~~~~v~~~  283 (301)
                      +++++.++
T Consensus       236 ~~~~vdgG  243 (249)
T 1o5i_A          236 QTIVVDGG  243 (249)
T ss_dssp             CEEEESTT
T ss_pred             CEEEECCC
Confidence            78888764

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.94  E-value=2.8e-26  Score=197.09  Aligned_cols=204  Identities=19%  Similarity=0.188  Sum_probs=149.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch--hhhccc---cCCCCeEEEEccCCCChHhHHHHhc-------
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-------  133 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~--~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-------  133 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+.+.  +++...   ....++.++.+|++| .+++.+++.       
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD-KANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            6899999999999999999999999999999998776  443221   134578999999999 766666554       


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCC-CEEEEecccccccccCCCCCCcchhh
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGV-NRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      + +|+||||||....        ++|+..+++|+.|++++++++.+    .+. ++||++||...+...           
T Consensus        81 ~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  148 (258)
T 3a28_C           81 G-FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF-----------  148 (258)
T ss_dssp             C-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCC-----------
T ss_pred             C-CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCC-----------
Confidence            5 9999999997532        24556789999999999998854    355 799999998754321           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce--------------eec-cccccccCCCCHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI--------------IME-TEDTLYEGTISRD  258 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~--------------~~~-~~~~~~~~~v~~~  258 (301)
                       .....|..+|.+.+.+.+       ..|+++++|+||++.|++.....              ... ........+.+++
T Consensus       149 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~  227 (258)
T 3a28_C          149 -PILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPE  227 (258)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTTSSCBCHH
T ss_pred             -CCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCCCCccCHH
Confidence             224678999999886653       35899999999999987532210              000 0001123467999


Q ss_pred             HHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          259 QVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       259 Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      |+|++++.++..+.  ..++++++.++
T Consensus       228 dvA~~v~~l~s~~~~~~tG~~i~vdGG  254 (258)
T 3a28_C          228 DVAGLVSFLASENSNYVTGQVMLVDGG  254 (258)
T ss_dssp             HHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             HHHHHHHHHhCcccCCCCCCEEEECCC
Confidence            99999976664332  35677777664

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.94  E-value=8.2e-27  Score=201.80  Aligned_cols=209  Identities=15%  Similarity=0.142  Sum_probs=149.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .++++|++|||||+||||++++++|+++|++|++++++... .++.   ......++.++.+|++| .+++.+++..   
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   92 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ-VPEIVKLFDQAVA   92 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHH
Confidence            35679999999999999999999999999999998776533 2222   12245789999999999 7666655542   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                         ++|+||||||+...        ++|+..+++|+.|++++++++.+.-  .++||++||....  ..+         .
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~--~~~---------~  161 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK--DFS---------V  161 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT--TCC---------C
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc--cCC---------C
Confidence               39999999997542        2456778999999999999997652  3599999997521  111         1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce----------ee------ccccccccCCCCHH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI----------IM------ETEDTLYEGTISRD  258 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~----------~~------~~~~~~~~~~v~~~  258 (301)
                      .....|+.+|.+.+.+.+       ..||+++.|+||++.|++.....          ..      .........+.+++
T Consensus       162 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~  241 (270)
T 3is3_A          162 PKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQ  241 (270)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHSTTCSCBCHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCCCCCCCCHH
Confidence            235778999999987653       36899999999999998643110          00      00011223467899


Q ss_pred             HHHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          259 QVAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       259 Dva~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      |+|++++.++ ++.   ..|+++++.++
T Consensus       242 dvA~~v~~L~-s~~~~~itG~~i~vdGG  268 (270)
T 3is3_A          242 DVANVVGFLV-SKEGEWVNGKVLTLDGG  268 (270)
T ss_dssp             HHHHHHHHHT-SGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHc-CCccCCccCcEEEeCCC
Confidence            9999996555 443   34677777653

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.94  E-value=2.7e-27  Score=209.94  Aligned_cols=223  Identities=16%  Similarity=0.071  Sum_probs=157.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC----------Cchhhhcc---ccCCCCeEEEEccCCCChHhHH
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD----------LDKAKTTL---SKDNPSLQIVKADVTEGSAKLS  129 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~----------~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~  129 (301)
                      .+++|++|||||+||||++++++|+++|++|++++|+          .+..++..   .....++.++.+|++| .+++.
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~  102 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVAD-WDQAA  102 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTS-HHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHH
Confidence            4578999999999999999999999999999999887          33333322   1234678899999999 76666


Q ss_pred             HHhc-------CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc-------C---CCEEEEecccc
Q 022216          130 EAIG-------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR-------G---VNRFILISSIL  184 (301)
Q Consensus       130 ~~~~-------~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~-------~---~~~iV~~SS~~  184 (301)
                      +.+.       . +|+||||||+...        ++|+..+++|+.|++++++++...       +   .++||++||..
T Consensus       103 ~~~~~~~~~~g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~  181 (322)
T 3qlj_A          103 GLIQTAVETFGG-LDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA  181 (322)
T ss_dssp             HHHHHHHHHHSC-CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred             HHHHHHHHHcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence            6554       5 9999999997543        245667899999999999987432       1   15999999987


Q ss_pred             cccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-ccccccCCCC
Q 022216          185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-EDTLYEGTIS  256 (301)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-~~~~~~~~v~  256 (301)
                      .+..            ......|+.+|.+.+.+.+       ..||+++.|+|| +.+++......... .......+++
T Consensus       182 ~~~~------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~~~~~~~~~~~~  248 (322)
T 3qlj_A          182 GLQG------------SVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMMATQDQDFDAMA  248 (322)
T ss_dssp             HHHC------------BTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC--------CCTTC
T ss_pred             HccC------------CCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhhhccccccCCCC
Confidence            5422            1234678999999887654       368999999999 88876544321111 1111124578


Q ss_pred             HHHHHHHHHHHhcCCC--CCCcEEEeecCCC--------------CCCcCHHHHHHHhhc
Q 022216          257 RDQVAEVAVEALLHPE--SSYKVVEIISRVD--------------APKRSYEDLFGSIKQ  300 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~--~~~~~~~v~~~~~--------------~~~~s~~e~~~~i~~  300 (301)
                      ++|+|++++.++....  ..|+++++.++..              ...+++.|+++.+.+
T Consensus       249 pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~  308 (322)
T 3qlj_A          249 PENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVAD  308 (322)
T ss_dssp             GGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHH
Confidence            9999999965553322  3577888776411              123477888887754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.94  E-value=1.8e-26  Score=200.93  Aligned_cols=209  Identities=18%  Similarity=0.188  Sum_probs=151.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-hhc---cccCCCCeEEEEccCCCChHhHHHHh-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTT---LSKDNPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.++. ++.   ......++.++.+|++| .+++.+.+     
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~  103 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVK  103 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC-HHHHHHHHHHHHH
Confidence            456799999999999999999999999999999999987542 221   12234678999999999 66665544     


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhh
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++ +|+||||||....        ++|+..+++|+.|++++++++.+.  +.++||++||...+....          
T Consensus       104 ~~g~-iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~----------  172 (283)
T 1g0o_A          104 IFGK-LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAV----------  172 (283)
T ss_dssp             HHSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSC----------
T ss_pred             HcCC-CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCC----------
Confidence              45 9999999997532        245567899999999999999775  567999999987542110          


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee--------------ec-cc--cccccCCCC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII--------------ME-TE--DTLYEGTIS  256 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~--------------~~-~~--~~~~~~~v~  256 (301)
                       .....|+.+|.+.+.+.+       ..|+++++|+||.+.|++......              .. ..  ......+.+
T Consensus       173 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~  251 (283)
T 1g0o_A          173 -PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGL  251 (283)
T ss_dssp             -SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBC
T ss_pred             -CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCCCCCCcC
Confidence             124678999999887654       358999999999999975221100              00 00  111234679


Q ss_pred             HHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          257 RDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++|+|++++.++..+.  ..++++++.++
T Consensus       252 p~dvA~~v~~l~s~~~~~itG~~i~vdgG  280 (283)
T 1g0o_A          252 PIDIARVVCFLASNDGGWVTGKVIGIDGG  280 (283)
T ss_dssp             HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence            9999999976665332  35667777653

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.94  E-value=1.8e-26  Score=201.15  Aligned_cols=208  Identities=15%  Similarity=0.077  Sum_probs=150.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI------  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~------  132 (301)
                      ..+++|+||||||+|+||++++++|+++|++|+++.|+.++.++...   ....++.++.+|++| .+++.+++      
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~  118 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTE  118 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC-HHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999998888765544321   134578999999999 77777665      


Q ss_pred             -cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          133 -GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       133 -~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                       ++ +|+||||||....        ++++..+++|+.|++++++++.    +.+.++||++||...+...          
T Consensus       119 ~~~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----------  187 (285)
T 2c07_A          119 HKN-VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN----------  187 (285)
T ss_dssp             CSC-CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------
T ss_pred             cCC-CCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC----------
Confidence             35 9999999997542        1345678999999988888874    4566899999998754321          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHHh
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                        .....|+.+|.+.+.+.+       ..|+++++|+||.+.+++.......   . ........+++++|+|++++.++
T Consensus       188 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~  265 (285)
T 2c07_A          188 --VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLACFLS  265 (285)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHH
T ss_pred             --CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh
Confidence              124678999998886553       2589999999999999864431100   0 00111234789999999998777


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      ..+.  ..++++++.++
T Consensus       266 ~~~~~~~~G~~i~v~gG  282 (285)
T 2c07_A          266 SDKSGYINGRVFVIDGG  282 (285)
T ss_dssp             SGGGTTCCSCEEEESTT
T ss_pred             CCCcCCCCCCEEEeCCC
Confidence            6432  35778887764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=7.9e-27  Score=200.67  Aligned_cols=208  Identities=16%  Similarity=0.060  Sum_probs=144.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhcc---ccCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      ++++|++|||||+||||++++++|+++|++|+++.++. +..++..   .....++.++.+|++| .+++.+++.     
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~   83 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN-AAEVEAAISAAADK   83 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999985544 3333221   2245678999999999 766666554     


Q ss_pred             --CCCCEEEEccCCC-CC--------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcchhh
Q 022216          134 --DDSEAVVCATGFQ-PG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~-~~--------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        + +|+||||||.. ..        ++|+..+++|+.|++++++++.+.-  .++||++||...+..           +
T Consensus        84 ~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~  151 (259)
T 3edm_A           84 FGE-IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG-----------G  151 (259)
T ss_dssp             HCS-EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC-----------C
T ss_pred             hCC-CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC-----------C
Confidence              5 99999999865 21        2345678999999999999997652  258999999875511           1


Q ss_pred             cchhhHHHHHHHHHHHHHH----H--cCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHHHHHHHHHHhc
Q 022216          201 LNVFGLTLIAKLQAEQYIR----K--SGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~----~--~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ......|+.+|.+.+.+.+    +  .+++++.|+||.+.+++.......     .........+.+++|+|++++.++.
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s  231 (259)
T 3edm_A          152 GPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPEVRERVAGATSLKREGSSEDVAGLVAFLAS  231 (259)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------CCBCHHHHHHHHHHHHS
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC
Confidence            1224678999999987654    2  249999999999999865432110     0111122346789999999976554


Q ss_pred             CCC--CCCcEEEeecC
Q 022216          270 HPE--SSYKVVEIISR  283 (301)
Q Consensus       270 ~~~--~~~~~~~v~~~  283 (301)
                      ...  ..|+++++.++
T Consensus       232 ~~~~~itG~~i~vdGg  247 (259)
T 3edm_A          232 DDAAYVTGACYDINGG  247 (259)
T ss_dssp             GGGTTCCSCEEEESBC
T ss_pred             ccccCccCCEEEECCC
Confidence            332  35777887764

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.94  E-value=6.7e-27  Score=199.42  Aligned_cols=202  Identities=18%  Similarity=0.156  Sum_probs=133.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHh---HHH---HhcCCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAK---LSE---AIGDDS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~---~~~~~~  136 (301)
                      ++++|++|||||+||||++++++|++ |++|++++|+.+..++...  ..++.++.+|+++ .+.   +.+   .+++ +
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~--~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~-i   76 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE--IEGVEPIESDIVK-EVLEEGGVDKLKNLDH-V   76 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT--STTEEEEECCHHH-HHHTSSSCGGGTTCSC-C
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh--hcCCcceecccch-HHHHHHHHHHHHhcCC-C
Confidence            45689999999999999999999988 9999999999877666543  3578999999987 422   112   2334 9


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++++..+++|+.+++++++++.    +.+ ++||++||...+...            ...
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------------~~~  143 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPH------------PGN  143 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC----------------------C
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCC------------CCc
Confidence            999999997543        2355678999999999888873    334 799999998765321            234


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcE
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKV  277 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~  277 (301)
                      ..|+.+|.+.+.+.+       ..|+++++|+||.+.|++................+++++|+|++++.++..+. .+.+
T Consensus       144 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~dvA~~i~~l~~~~~-~~~~  222 (245)
T 3e9n_A          144 TIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQGTNFRPEIYIEPKEIANAIRFVIDAGE-TTQI  222 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------CCGGGSCHHHHHHHHHHHHTSCT-TEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhhhhcccccccCCCHHHHHHHHHHHHcCCC-ccce
Confidence            779999999987664       36899999999999998755432222111222347899999999988887665 5677


Q ss_pred             EEeecC
Q 022216          278 VEIISR  283 (301)
Q Consensus       278 ~~v~~~  283 (301)
                      +++.-.
T Consensus       223 ~~i~~~  228 (245)
T 3e9n_A          223 TNVDVR  228 (245)
T ss_dssp             EEEEEE
T ss_pred             eeeEEE
Confidence            777653

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.1e-27  Score=204.76  Aligned_cols=208  Identities=16%  Similarity=0.204  Sum_probs=150.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC---eEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhc
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIG  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~---~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~  133 (301)
                      .++++|++|||||+||||++++++|+++|+   +|++++|+.+.+++....     ...++.++.+|++| .+++.+++.
T Consensus        29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d-~~~v~~~~~  107 (287)
T 3rku_A           29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ-AEKIKPFIE  107 (287)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC-GGGHHHHHH
T ss_pred             hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHH
Confidence            356799999999999999999999999998   999999998776654321     24678999999999 777777665


Q ss_pred             C------CCCEEEEccCCCC-C--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCC
Q 022216          134 D------DSEAVVCATGFQP-G--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       134 ~------~~d~Vi~~Ag~~~-~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~  194 (301)
                      .      ++|+||||||... .        ++|+..+++|+.|++++++++    ++.+.++||++||...+..      
T Consensus       108 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~------  181 (287)
T 3rku_A          108 NLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDA------  181 (287)
T ss_dssp             TSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------
T ss_pred             HHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCC------
Confidence            3      4999999999643 1        235667899999999999998    4456689999999875421      


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc----ccccccCCCCHHHHHHH
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET----EDTLYEGTISRDQVAEV  263 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~----~~~~~~~~v~~~Dva~~  263 (301)
                            ......|+.+|.+.+.+.+       ..||+++.|+||++.|++.........    .......+++++|+|++
T Consensus       182 ------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~pedvA~~  255 (287)
T 3rku_A          182 ------YPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADL  255 (287)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTTSCCEEHHHHHHH
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhcccCCCCHHHHHHH
Confidence                  1224678999999887654       268999999999999985311100000    00001124589999999


Q ss_pred             HHHHhcCCCC--CCcEEEeec
Q 022216          264 AVEALLHPES--SYKVVEIIS  282 (301)
Q Consensus       264 ~~~~l~~~~~--~~~~~~v~~  282 (301)
                      ++.++..+..  .++++.+.+
T Consensus       256 v~~l~s~~~~~i~g~~i~v~~  276 (287)
T 3rku_A          256 IVYATSRKQNTVIADTLIFPT  276 (287)
T ss_dssp             HHHHHTSCTTEEEEEEEEEET
T ss_pred             HHHHhCCCCCeEecceEEeeC
Confidence            9766654431  234444444

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.94  E-value=2.3e-26  Score=195.30  Aligned_cols=195  Identities=17%  Similarity=0.136  Sum_probs=148.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc------CCCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG------DDSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------~~~d~V  139 (301)
                      +|+||||||+|+||++++++|+++|++|++++|+.+ .        ..+.++.+|++| .+++.+++.      + +|+|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~--------~~~~~~~~D~~~-~~~~~~~~~~~~~~~~-~d~l   70 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G--------EDLIYVEGDVTR-EEDVRRAVARAQEEAP-LFAV   70 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S--------SSSEEEECCTTC-HHHHHHHHHHHHHHSC-EEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c--------cceEEEeCCCCC-HHHHHHHHHHHHhhCC-ceEE
Confidence            589999999999999999999999999999999865 1        345889999999 777777765      6 9999


Q ss_pred             EEccCCCCCC------------CCCCceeeehHHHHHHHHHHHHc----C------CCEEEEecccccccccCCCCCCcc
Q 022216          140 VCATGFQPGW------------DLFAPWKVDNFGTVNLVEACRKR----G------VNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       140 i~~Ag~~~~~------------~~~~~~~~N~~g~~~l~~a~~~~----~------~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                      |||||.....            +++..+++|+.++.++++++.+.    +      .++||++||...+...        
T Consensus        71 i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------  142 (242)
T 1uay_A           71 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ--------  142 (242)
T ss_dssp             EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC--------
T ss_pred             EEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC--------
Confidence            9999965422            34556789999999999998643    1      1299999999766432        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccc-cCCCCHHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLY-EGTISRDQVAEVAV  265 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~-~~~v~~~Dva~~~~  265 (301)
                          .+...|+.+|.+.+.+.+       ..|+++++|+||+++|++.......    ....... ..+.+++|+|++++
T Consensus       143 ----~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  218 (242)
T 1uay_A          143 ----IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVL  218 (242)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCSCCCHHHHHHHHH
T ss_pred             ----CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCCCcccCCCHHHHHHHHH
Confidence                234678999998886653       2589999999999999853321100    0001111 34689999999998


Q ss_pred             HHhcCCCCCCcEEEeecC
Q 022216          266 EALLHPESSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~~~~~~~~~v~~~  283 (301)
                      .++.++...++++++.++
T Consensus       219 ~l~~~~~~~G~~~~v~gG  236 (242)
T 1uay_A          219 HILENPMLNGEVVRLDGA  236 (242)
T ss_dssp             HHHHCTTCCSCEEEESTT
T ss_pred             HHhcCCCCCCcEEEEcCC
Confidence            888775567888988775

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.94  E-value=6.7e-27  Score=201.35  Aligned_cols=206  Identities=18%  Similarity=0.216  Sum_probs=149.2

Q ss_pred             cccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCc---hhhhccccCCCCeEEEEccCCCChHhHHHHhc----
Q 022216           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      ++++|++|||||+  |+||++++++|+++|++|++++|+.+   ..+++.... ..+.++.+|++| .+++.+++.    
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-~~~~~~~~D~~~-~~~v~~~~~~~~~   82 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL-GGALLFRADVTQ-DEELDALFAGVKE   82 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHT-TCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-CCcEEEECCCCC-HHHHHHHHHHHHH
Confidence            4578999999999  99999999999999999999999874   222222111 247899999999 776666554    


Q ss_pred             ---CCCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCc
Q 022216          134 ---DDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                         + +|+||||||....            ++|+..+++|+.|++++++++.+.  +.++||++||...+...       
T Consensus        83 ~~g~-iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~-------  154 (261)
T 2wyu_A           83 AFGG-LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV-------  154 (261)
T ss_dssp             HHSS-EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC-------
T ss_pred             HcCC-CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCC-------
Confidence               5 9999999996531            235567899999999999999764  12699999998654211       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~  263 (301)
                           ..+..|+.+|.+.+.+.+       ..|+++++|+||++.|++........      ........+.+++|+|++
T Consensus       155 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~  229 (261)
T 2wyu_A          155 -----PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNL  229 (261)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTSSCCCHHHHHHH
T ss_pred             -----CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence                 224678999999987654       24999999999999998643210000      001112346799999999


Q ss_pred             HHHHhcCCC--CCCcEEEeecC
Q 022216          264 AVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       264 ~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++.++..+.  ..++++++.++
T Consensus       230 v~~l~s~~~~~~tG~~~~vdgG  251 (261)
T 2wyu_A          230 GLFLLSPLASGITGEVVYVDAG  251 (261)
T ss_dssp             HHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHcChhhcCCCCCEEEECCC
Confidence            977764322  34677887764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.94  E-value=4.7e-27  Score=202.41  Aligned_cols=206  Identities=14%  Similarity=0.083  Sum_probs=147.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh-------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI-------  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-------  132 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+.+       
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHh
Confidence            3568999999999999999999999999999999998766554322   134578999999999 76665544       


Q ss_pred             cCCCCEEEEccCCC-CC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchh
Q 022216          133 GDDSEAVVCATGFQ-PG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~-~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                      ++ +|+||||||.. ..        ++|+..+++|+.+++++++++.+    .+.++||++||...+...          
T Consensus        83 g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  151 (262)
T 1zem_A           83 GK-IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP----------  151 (262)
T ss_dssp             SC-CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC----------
T ss_pred             CC-CCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC----------
Confidence            35 99999999975 21        23566789999999999998743    356799999998755321          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc------------ee-ecc-------cccccc
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN------------II-MET-------EDTLYE  252 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~------------~~-~~~-------~~~~~~  252 (301)
                        .....|+.+|.+.+.+.+       ..|+++++|+||++.+++....            .. ...       ......
T Consensus       152 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  229 (262)
T 1zem_A          152 --PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMR  229 (262)
T ss_dssp             --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTS
T ss_pred             --CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCCCC
Confidence              124678899988876543       3689999999999998853221            00 000       001123


Q ss_pred             CCCCHHHHHHHHHHHhcCCC--CCCcEEEeec
Q 022216          253 GTISRDQVAEVAVEALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       253 ~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~  282 (301)
                      .+.+++|+|++++.++..+.  ..++++.+.+
T Consensus       230 r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG  261 (262)
T 1zem_A          230 RYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG  261 (262)
T ss_dssp             SCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred             CCcCHHHHHHHHHHHcCchhcCcCCcEEecCC
Confidence            46789999999976654322  3455665543

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.94  E-value=3e-26  Score=198.37  Aligned_cols=206  Identities=16%  Similarity=0.170  Sum_probs=144.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC--CCCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      +|+ |++|||||+|+||++++++|+++|++|++++|+.+++++.....  ..++.++.+|++| .+++.+++..      
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRD-RAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHTCCGGGS
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence            455 89999999999999999999999999999999877665543211  1478999999999 8888777654      


Q ss_pred             CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCC-EEEEecccccccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVN-RFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~-~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      ++|+||||||....         ++|+.++++|+.|++++++++.    +.+.+ +||++||...+..            
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~------------  164 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWP------------  164 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSC------------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccC------------
Confidence            37999999997532         2355678999999998888773    45567 9999999875421            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc--cccc--ccCCCCHHHHHHHHHHHhc
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET--EDTL--YEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~--~~~~--~~~~v~~~Dva~~~~~~l~  269 (301)
                      ......|+.+|.+.+.+.+       ..|+++++|+||++.|++.........  ....  ...+++++|+|++++.++.
T Consensus       165 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s  244 (272)
T 2nwq_A          165 YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMN  244 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC--------------------CCCCBCHHHHHHHHHHHHT
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHHHHHhhccCCCCCHHHHHHHHHHHhC
Confidence            1224679999999997764       258999999999999987432211000  0000  1125799999999987776


Q ss_pred             CCC-CCCcEEEeec
Q 022216          270 HPE-SSYKVVEIIS  282 (301)
Q Consensus       270 ~~~-~~~~~~~v~~  282 (301)
                      .+. ..++.+.+..
T Consensus       245 ~~~~~~g~~i~v~~  258 (272)
T 2nwq_A          245 QPAHLNINSLEIMP  258 (272)
T ss_dssp             SCTTEEEEEEEEEE
T ss_pred             CCccCccceEEEee
Confidence            543 2334444444

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=6.2e-27  Score=200.29  Aligned_cols=194  Identities=14%  Similarity=0.129  Sum_probs=142.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHhcC-
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGD-  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~-  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|+.+++++...+      ...++.++.+|++| .+++.+.+.. 
T Consensus         3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~   81 (250)
T 3nyw_A            3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD-CTKADTEIKDI   81 (250)
T ss_dssp             --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC-HHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC-HHHHHHHHHHH
Confidence            345789999999999999999999999999999999998766554321      22678999999999 7666655532 


Q ss_pred             -----CCCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          135 -----DSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 -----~~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                           ++|+||||||....       ++|+..+++|+.|++++++++    ++.+.++||++||...+..          
T Consensus        82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------  151 (250)
T 3nyw_A           82 HQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYG----------  151 (250)
T ss_dssp             HHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC----------------
T ss_pred             HHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCC----------
Confidence                 39999999997543       234567899999999999998    3456679999999864321          


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                        ..+...|+.+|.+.+.+.+       ..|++++.|+||++.+++.....    .......+++++|+|++++.++..+
T Consensus       152 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~----~~~~~~~~~~p~dva~~v~~l~s~~  225 (250)
T 3nyw_A          152 --FADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAG----TPFKDEEMIQPDDLLNTIRCLLNLS  225 (250)
T ss_dssp             ---CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHTT----CCSCGGGSBCHHHHHHHHHHHHTSC
T ss_pred             --CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchhhhcC----CCcccccCCCHHHHHHHHHHHHcCC
Confidence              1124678899998886653       35899999999999987532211    1112234789999999998777655


Q ss_pred             C
Q 022216          272 E  272 (301)
Q Consensus       272 ~  272 (301)
                      .
T Consensus       226 ~  226 (250)
T 3nyw_A          226 E  226 (250)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.94  E-value=2e-26  Score=200.40  Aligned_cols=209  Identities=18%  Similarity=0.131  Sum_probs=157.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-----CC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-----DS  136 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----~~  136 (301)
                      .++++|++|||||+|+||++++++|+++|++|++++|+.++.++...+...++.++.+|++| .+++.+++..     ++
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~i  104 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTS-EDSVLAAIEAANQLGRL  104 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHTTSSEE
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhCCC
Confidence            35679999999999999999999999999999999999887766554445689999999999 7777766641     48


Q ss_pred             CEEEEc-cCCCCCC-------------CCCCceeeehHHHHHHHHHHHH----------cCCCEEEEecccccccccCCC
Q 022216          137 EAVVCA-TGFQPGW-------------DLFAPWKVDNFGTVNLVEACRK----------RGVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       137 d~Vi~~-Ag~~~~~-------------~~~~~~~~N~~g~~~l~~a~~~----------~~~~~iV~~SS~~~~~~~~~~  192 (301)
                      |+|||| ||.....             +|+..+++|+.+++++++++..          .+.++||++||...+...   
T Consensus       105 d~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---  181 (281)
T 3ppi_A          105 RYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQ---  181 (281)
T ss_dssp             EEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCC---
T ss_pred             CeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCC---
Confidence            999999 5543211             1456788999999999998842          234699999999755321   


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----eccccccccCCCCHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----METEDTLYEGTISRDQV  260 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~~~~~~~~~~v~~~Dv  260 (301)
                               .....|+.+|.+.+.+.+       ..|++++.|+||++.+++......     ..........+.+++|+
T Consensus       182 ---------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pedv  252 (281)
T 3ppi_A          182 ---------IGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPFPKRLGTPDEF  252 (281)
T ss_dssp             ---------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHHTCCSSSSCBCHHHH
T ss_pred             ---------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcccHHHHHHHHhcCCCCCCCCCHHHH
Confidence                     235778999998886553       358999999999999875332110     00011111357899999


Q ss_pred             HHHHHHHhcCCCCCCcEEEeecC
Q 022216          261 AEVAVEALLHPESSYKVVEIISR  283 (301)
Q Consensus       261 a~~~~~~l~~~~~~~~~~~v~~~  283 (301)
                      |++++.++.++...|+++++.++
T Consensus       253 A~~v~~l~s~~~~tG~~i~vdGG  275 (281)
T 3ppi_A          253 ADAAAFLLTNGYINGEVMRLDGA  275 (281)
T ss_dssp             HHHHHHHHHCSSCCSCEEEESTT
T ss_pred             HHHHHHHHcCCCcCCcEEEECCC
Confidence            99999888876677888888775

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.94  E-value=2e-26  Score=199.41  Aligned_cols=214  Identities=15%  Similarity=0.114  Sum_probs=152.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------DD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~~  135 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+++..++...+. .++.++.+|++| .+++.+++.       + 
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~-   82 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-PGAVFILCDVTQ-EDDVKTLVSETIRRFGR-   82 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-TTEEEEECCTTS-HHHHHHHHHHHHHHHSC-
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cCCeEEEcCCCC-HHHHHHHHHHHHHHcCC-
Confidence            456899999999999999999999999999999999877665543322 358899999999 776666554       5 


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|+||||||....         ++|+..+++|+.|++++++++.+   .+.++||++||...+...            ..
T Consensus        83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~  150 (270)
T 1yde_A           83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ------------AQ  150 (270)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC------------TT
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCC------------CC
Confidence            9999999996532         13456789999999999999853   124799999998643211            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc------ee--ec--cccccccCCCCHHHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN------II--ME--TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~------~~--~~--~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      ...|+.+|.+.+.+.+       .+|+++++|+||+++|++....      ..  ..  ........+.+++|+|++++.
T Consensus       151 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~  230 (270)
T 1yde_A          151 AVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVF  230 (270)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            4678999999987654       3689999999999999753210      00  00  001122346789999999976


Q ss_pred             HhcCC-CCCCcEEEeecCCCCCCcCHHHH
Q 022216          267 ALLHP-ESSYKVVEIISRVDAPKRSYEDL  294 (301)
Q Consensus       267 ~l~~~-~~~~~~~~v~~~~~~~~~s~~e~  294 (301)
                      ++... ...++++.+.++   ....+.+.
T Consensus       231 L~s~~~~itG~~i~vdGG---~~~~~~~~  256 (270)
T 1yde_A          231 LASEANFCTGIELLVTGG---AELGYGCK  256 (270)
T ss_dssp             HHHHCTTCCSCEEEESTT---TTSCC---
T ss_pred             HcccCCCcCCCEEEECCC---eecccCcC
Confidence            66532 235677777764   54444433

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-26  Score=198.94  Aligned_cols=203  Identities=18%  Similarity=0.166  Sum_probs=148.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +|++|||||+||||++++++|+++|  +.|++.+|+.+.++++......++.++.+|++| .+++.+.+..      ++|
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id   80 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITE-DSVLKQLVNAAVKGHGKID   80 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHhcCCcc
Confidence            5899999999999999999999985  788888998877666544334678999999999 7666665541      399


Q ss_pred             EEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          138 AVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       138 ~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +||||||....         ++|+..+++|+.|++++++++    ++.+ ++||++||...+..            ....
T Consensus        81 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~------------~~~~  147 (254)
T 3kzv_A           81 SLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMY------------FSSW  147 (254)
T ss_dssp             EEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCS------------SCCS
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccC------------CCCc
Confidence            99999997432         234567899999999999998    4545 79999999875432            1235


Q ss_pred             hHHHHHHHHHHHHHHH-----cCCcEEEEecCcccCCCCCCceeecc-------------ccccccCCCCHHHHHHHHHH
Q 022216          205 GLTLIAKLQAEQYIRK-----SGINYTIIRPGGLRNEPPTGNIIMET-------------EDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~~-----~~i~~~~irpg~v~~~~~~~~~~~~~-------------~~~~~~~~v~~~Dva~~~~~  266 (301)
                      ..|..+|.+.+.+.+.     .+++++.|+||++.|++.........             .......+.+++|+|++++.
T Consensus       148 ~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dva~~v~~  227 (254)
T 3kzv_A          148 GAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAK  227 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhcCCcCCcccHHHHHHH
Confidence            7899999999876642     48999999999999987544321100             00112346789999999977


Q ss_pred             HhcCCC---CCCcEEEeec
Q 022216          267 ALLHPE---SSYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~---~~~~~~~v~~  282 (301)
                      ++..+.   ..|+++++.+
T Consensus       228 L~s~~~~~~itG~~i~vdg  246 (254)
T 3kzv_A          228 LALHGIPDGVNGQYLSYND  246 (254)
T ss_dssp             HHHHCCCGGGTTCEEETTC
T ss_pred             HHhhcccCCCCccEEEecC
Confidence            765442   4567776655

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.94  E-value=1.5e-26  Score=199.29  Aligned_cols=206  Identities=16%  Similarity=0.146  Sum_probs=152.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +++|++|||||+|+||++++++|+++|++|++++|+.+++++...+...++.++.+|++| .+++.+++.+      ++|
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD   82 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH   82 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHHcCCCc
Confidence            568999999999999999999999999999999999877665544334678999999999 7666655532      399


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      +||||||....        ++|+..+++|+.|++++++++.+.-  .++||++||...++             ......|
T Consensus        83 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-------------~~~~~~Y  149 (263)
T 2a4k_A           83 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-------------AFGLAHY  149 (263)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-------------HHHHHHH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC-------------CCCcHHH
Confidence            99999996542        2345678899999999999996642  46999999997551             1234678


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee--c--cccccccCCCCHHHHHHHHHHHhcCCC--CC
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM--E--TEDTLYEGTISRDQVAEVAVEALLHPE--SS  274 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~--~--~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~  274 (301)
                      ..+|.+.+.+.+       ..|+++++|+||++.|++.......  .  ........+.+++|+|++++.++..+.  ..
T Consensus       150 ~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~t  229 (263)
T 2a4k_A          150 AAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEEVAQAALFLLSEESAYIT  229 (263)
T ss_dssp             HHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCc
Confidence            888887776553       3589999999999999864431000  0  001112346799999999977775432  45


Q ss_pred             CcEEEeecC
Q 022216          275 YKVVEIISR  283 (301)
Q Consensus       275 ~~~~~v~~~  283 (301)
                      ++++++.++
T Consensus       230 G~~i~vdgG  238 (263)
T 2a4k_A          230 GQALYVDGG  238 (263)
T ss_dssp             SCEEEESTT
T ss_pred             CCEEEECCC
Confidence            677777664

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.94  E-value=4.1e-26  Score=197.53  Aligned_cols=207  Identities=12%  Similarity=0.165  Sum_probs=144.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      ++|+||||||+||||++++++|+++|++|+++ .|+.+..++..   .....++.++.+|++| .+++.+++..      
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN-AADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999887 45544433322   1245689999999999 7666655541      


Q ss_pred             CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc-------CCCEEEEecccccccccCCCCCCcch
Q 022216          135 DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR-------GVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~-------~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                      ++|+||||||....         ++++..+++|+.|++++++++.+.       +.++||++||...+....        
T Consensus       104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------  175 (272)
T 4e3z_A          104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA--------  175 (272)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT--------
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC--------
Confidence            39999999997532         234567899999999999988543       346899999987543211        


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-----eccccccccCCCCHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-----METEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                         ..+..|+.+|.+.+.+.+       ..|++++.|+||++.|++......     ..........+.+++|+|++++.
T Consensus       176 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~edvA~~i~~  252 (272)
T 4e3z_A          176 ---TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADAILY  252 (272)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC------------------CCTTSSCBCHHHHHHHHHH
T ss_pred             ---CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHHhhcCCcCCCcCHHHHHHHHHH
Confidence               124668999999987653       358999999999999986543111     00111122346689999999987


Q ss_pred             HhcCCC--CCCcEEEeecC
Q 022216          267 ALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~~  283 (301)
                      ++..+.  ..|+++++.++
T Consensus       253 l~s~~~~~~tG~~i~vdgG  271 (272)
T 4e3z_A          253 LLSPSASYVTGSILNVSGG  271 (272)
T ss_dssp             HHSGGGTTCCSCEEEESTT
T ss_pred             HhCCccccccCCEEeecCC
Confidence            775332  35778888763

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.94  E-value=2.4e-26  Score=198.46  Aligned_cols=207  Identities=18%  Similarity=0.146  Sum_probs=142.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhcc---ccCCCCeEEEEccCCCChHhHHHHhc----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      +.+++|++|||||+||||++++++|+++|++|+++.++.. ..++..   .....++.++.+|++| .+++.+.+.    
T Consensus        23 m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~  101 (267)
T 3u5t_A           23 MMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD-PAAVRRLFATAEE  101 (267)
T ss_dssp             ----CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHH
Confidence            3456899999999999999999999999999998855443 333222   2245688999999999 766666554    


Q ss_pred             ---CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhh
Q 022216          134 ---DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                         . +|+||||||+...        ++|+..+++|+.|++++++++.+.  ..++||++||...+...           
T Consensus       102 ~~g~-iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  169 (267)
T 3u5t_A          102 AFGG-VDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH-----------  169 (267)
T ss_dssp             HHSC-EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC-----------
T ss_pred             HcCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC-----------
Confidence               5 9999999997542        235667789999999999998653  23699999998654221           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       .....|+.+|.+.+.+.+       ..||+++.|+||.+.|++........     ........+.+++|+|++++.++
T Consensus       170 -~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~  248 (267)
T 3u5t_A          170 -PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAPLERLGTPQDIAGAVAFLA  248 (267)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHHHTSSTTCSCBCHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence             234679999999987664       25899999999999998753321100     01112234678999999996655


Q ss_pred             cCCC--CCCcEEEeec
Q 022216          269 LHPE--SSYKVVEIIS  282 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~  282 (301)
                      ....  ..|+++++.+
T Consensus       249 s~~~~~itG~~i~vdG  264 (267)
T 3u5t_A          249 GPDGAWVNGQVLRANG  264 (267)
T ss_dssp             STTTTTCCSEEEEESS
T ss_pred             CccccCccCCEEEeCC
Confidence            4332  3566666655

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.94  E-value=9.5e-27  Score=198.10  Aligned_cols=204  Identities=18%  Similarity=0.114  Sum_probs=148.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      +|+||||||+|+||++++++|+++|++|+++ .|+.+..++...   ....++.++.+|++| .+++.+++.       +
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999999985 677655443221   123578899999999 777776664       5


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|+||||||....        ++++..+++|+.++.++++++.+    .+.++||++||...+...            .
T Consensus        80 -id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~  146 (244)
T 1edo_A           80 -IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN------------I  146 (244)
T ss_dssp             -CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC------------T
T ss_pred             -CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCC------------C
Confidence             9999999997542        23456789999999999998854    466899999998654211            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---ec-cccccccCCCCHHHHHHHHHHHhcCC
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---ME-TEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~~-~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ....|..+|.+.+.+.+       ..|+++++|+||++.|++......   .. ........+.+++|+|++++.++.++
T Consensus       147 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~  226 (244)
T 1edo_A          147 GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENVAGLVEFLALSP  226 (244)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCS
T ss_pred             CCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcChHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCC
Confidence            24678899998876553       258999999999999875322110   00 00112234789999999998777454


Q ss_pred             C---CCCcEEEeecC
Q 022216          272 E---SSYKVVEIISR  283 (301)
Q Consensus       272 ~---~~~~~~~v~~~  283 (301)
                      .   ..++++++.++
T Consensus       227 ~~~~~~G~~~~v~gG  241 (244)
T 1edo_A          227 AASYITGQAFTIDGG  241 (244)
T ss_dssp             GGGGCCSCEEEESTT
T ss_pred             ccCCcCCCEEEeCCC
Confidence            3   34778887764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.94  E-value=3.7e-26  Score=199.23  Aligned_cols=203  Identities=13%  Similarity=0.130  Sum_probs=147.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc----------cccCCCCeEEEEccCCCChHhHHHH
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT----------LSKDNPSLQIVKADVTEGSAKLSEA  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~----------~~~~~~~~~~~~~Dl~~~~~~~~~~  131 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.++.+++          ......++.++.+|++| .+++.+.
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~   83 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD-GDAVAAA   83 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS-HHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHH
Confidence            567899999999999999999999999999999999997743221          11134679999999999 7666665


Q ss_pred             hc-------CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----CCCEEEEecccccccccCCC
Q 022216          132 IG-------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----GVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       132 ~~-------~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~~~~iV~~SS~~~~~~~~~~  192 (301)
                      +.       . +|+||||||....        ++|+..+++|+.|++++++++.+.    +.++||++||...+...   
T Consensus        84 ~~~~~~~~g~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---  159 (285)
T 3sc4_A           84 VAKTVEQFGG-IDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK---  159 (285)
T ss_dssp             HHHHHHHHSC-CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG---
T ss_pred             HHHHHHHcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC---
Confidence            54       5 9999999997542        234567789999999999998543    55799999998643211   


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecC-cccCCCCCCceeeccccccccCCCCHHHHHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPG-GLRNEPPTGNIIMETEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg-~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~  264 (301)
                              ......|+.+|.+.+.+.+       ..||+++.|+|| .+.+++.....   ........+.+++|+|+++
T Consensus       160 --------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~~~~~~~---~~~~~~~r~~~pedvA~~~  228 (285)
T 3sc4_A          160 --------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQNLL---GGDEAMARSRKPEVYADAA  228 (285)
T ss_dssp             --------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCHHHHHHH---TSCCCCTTCBCTHHHHHHH
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccHHHHhhc---cccccccCCCCHHHHHHHH
Confidence                    1124678999999887653       368999999999 46665422111   1112233567999999999


Q ss_pred             HHHhcCCC-CCCcEEEe
Q 022216          265 VEALLHPE-SSYKVVEI  280 (301)
Q Consensus       265 ~~~l~~~~-~~~~~~~v  280 (301)
                      +.++..+. ..++++.+
T Consensus       229 ~~l~s~~~~~tG~~i~~  245 (285)
T 3sc4_A          229 YVVLNKPSSYTGNTLLC  245 (285)
T ss_dssp             HHHHTSCTTCCSCEEEH
T ss_pred             HHHhCCcccccceEEEE
Confidence            77776553 34444443

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.94  E-value=3.1e-26  Score=195.60  Aligned_cols=200  Identities=17%  Similarity=0.141  Sum_probs=145.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|++++.++.        ..+.+|++| .+++.+++..      ++
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~--------~~~~~D~~~-~~~~~~~~~~~~~~~g~i   82 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL--------FGVEVDVTD-SDAVDRAFTAVEEHQGPV   82 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS--------EEEECCTTC-HHHHHHHHHHHHHHHSSC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHh--------cCeeccCCC-HHHHHHHHHHHHHHcCCC
Confidence            46789999999999999999999999999999999987654432        238899999 7666655532      39


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |+||||||....        ++|+..+++|+.|++++++++.    +.+.++||++||...+...            ...
T Consensus        83 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~  150 (247)
T 1uzm_A           83 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI------------GNQ  150 (247)
T ss_dssp             SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------CC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCC------------CCC
Confidence            999999997542        2456678999999999999874    3566899999998643211            124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce---ee-ccccccccCCCCHHHHHHHHHHHhcCCC-
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI---IM-ETEDTLYEGTISRDQVAEVAVEALLHPE-  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~---~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~-  272 (301)
                      ..|..+|.+.+.+.+       ..|+++++|+||++.+++.....   .. .........+.+++|+|++++.++..+. 
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~  230 (247)
T 1uzm_A          151 ANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDAS  230 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTTCSCBCHHHHHHHHHHHHSGGGT
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccc
Confidence            678999998886654       36899999999999987532110   00 0001112346899999999977775432 


Q ss_pred             -CCCcEEEeecC
Q 022216          273 -SSYKVVEIISR  283 (301)
Q Consensus       273 -~~~~~~~v~~~  283 (301)
                       ..++++++.++
T Consensus       231 ~~~G~~i~vdgG  242 (247)
T 1uzm_A          231 YISGAVIPVDGG  242 (247)
T ss_dssp             TCCSCEEEESTT
T ss_pred             CCcCCEEEECCC
Confidence             35777887764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.94  E-value=2e-26  Score=199.50  Aligned_cols=191  Identities=12%  Similarity=0.108  Sum_probs=147.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      .++++|+||||||+|+||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+++.     
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAE  105 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC-HHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998766554322   134578999999999 776666554     


Q ss_pred             --CCCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 --DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        + +|+||||||.....        ++...+++|+.++.++++++.    +.+.++||++||...+..           
T Consensus       106 ~g~-iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-----------  173 (272)
T 1yb1_A          106 IGD-VSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS-----------  173 (272)
T ss_dssp             TCC-CSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC-----------
T ss_pred             CCC-CcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC-----------
Confidence              5 99999999975432        344678999999888888773    456689999999875532           


Q ss_pred             hcchhhHHHHHHHHHHHHHH----H------cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhc
Q 022216          200 FLNVFGLTLIAKLQAEQYIR----K------SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~----~------~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                       ......|+.+|.+.+.+.+    +      .|+++++|+||++.|++....      ......+++++|+|++++.++.
T Consensus       174 -~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~------~~~~~~~~~~~dva~~i~~~~~  246 (272)
T 1yb1_A          174 -VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP------STSLGPTLEPEEVVNRLMHGIL  246 (272)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT------HHHHCCCCCHHHHHHHHHHHHH
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc------cccccCCCCHHHHHHHHHHHHH
Confidence             2335779999999987653    2      389999999999999874321      1122457899999999999998


Q ss_pred             CCC
Q 022216          270 HPE  272 (301)
Q Consensus       270 ~~~  272 (301)
                      ++.
T Consensus       247 ~~~  249 (272)
T 1yb1_A          247 TEQ  249 (272)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.94  E-value=5.4e-26  Score=198.16  Aligned_cols=205  Identities=15%  Similarity=0.146  Sum_probs=147.7

Q ss_pred             ccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCc---hhhhccccCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++|++|||||+  ||||++++++|+++|++|++++|+.+   ..+++.. ...++.++.+|++| .+++.+++.     
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~-~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~   96 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAK-GFGSDLVVKCDVSL-DEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH-HTTCCCEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-hcCCeEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            568999999999  99999999999999999999999874   2222221 11247889999999 776666554     


Q ss_pred             --CCCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCc
Q 022216          134 --DDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                        + +|+||||||+...            ++++..+++|+.|++++++++.+.   +.++||++||...+...       
T Consensus        97 ~g~-iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~-------  168 (285)
T 2p91_A           97 WGS-LDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVV-------  168 (285)
T ss_dssp             TSC-CCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBC-------
T ss_pred             cCC-CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCC-------
Confidence              5 9999999996531            234567899999999999999654   23799999998654221       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~  263 (301)
                           ..+..|+.+|.+.+.+.+       ..|+++++|+||++.|++........      ........+.+++|+|++
T Consensus       169 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~  243 (285)
T 2p91_A          169 -----PHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPITIEDVGDT  243 (285)
T ss_dssp             -----TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTTSSCCCHHHHHHH
T ss_pred             -----CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence                 224678999999987653       25899999999999998753311000      001112346799999999


Q ss_pred             HHHHhcCCC--CCCcEEEeecC
Q 022216          264 AVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       264 ~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++.++..+.  ..++++++.++
T Consensus       244 ~~~l~s~~~~~~tG~~~~vdgg  265 (285)
T 2p91_A          244 AVFLCSDWARAITGEVVHVDNG  265 (285)
T ss_dssp             HHHHTSGGGTTCCSCEEEESTT
T ss_pred             HHHHcCCcccCCCCCEEEECCC
Confidence            977664322  34677877764

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.94  E-value=1.4e-26  Score=191.44  Aligned_cols=179  Identities=18%  Similarity=0.161  Sum_probs=138.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi~~Ag  144 (301)
                      |+||||||+|+||++++++|+ +|++|++++|+.+              .+.+|++| .+++.+.+.+  ++|+||||||
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------~~~~D~~~-~~~~~~~~~~~~~~d~vi~~ag   67 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------DVTVDITN-IDSIKKMYEQVGKVDAIVSATG   67 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------SEECCTTC-HHHHHHHHHHHCCEEEEEECCC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------ceeeecCC-HHHHHHHHHHhCCCCEEEECCC
Confidence            489999999999999999999 9999999998754              46899999 7777776654  4899999999


Q ss_pred             CCCCC--------CCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHH
Q 022216          145 FQPGW--------DLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (301)
Q Consensus       145 ~~~~~--------~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (301)
                      .....        ++...+++|+.++.++++++.+.   + ++||++||...+..            ..+...|+.+|.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~------------~~~~~~Y~~sK~~  134 (202)
T 3d7l_A           68 SATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDP------------IVQGASAAMANGA  134 (202)
T ss_dssp             CCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSC------------CTTCHHHHHHHHH
T ss_pred             CCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCC------------CCccHHHHHHHHH
Confidence            65321        23456789999999999999765   4 69999999865432            1234779999999


Q ss_pred             HHHHHHH------cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEe
Q 022216          214 AEQYIRK------SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEI  280 (301)
Q Consensus       214 ~e~~~~~------~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v  280 (301)
                      .|.+.+.      .|+++++|+||+++|++...     ........+++++|+|++++.++.+ ...+++|++
T Consensus       135 ~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~~-----~~~~~~~~~~~~~dva~~~~~~~~~-~~~G~~~~v  201 (202)
T 3d7l_A          135 VTAFAKSAAIEMPRGIRINTVSPNVLEESWDKL-----EPFFEGFLPVPAAKVARAFEKSVFG-AQTGESYQV  201 (202)
T ss_dssp             HHHHHHHHTTSCSTTCEEEEEEECCBGGGHHHH-----GGGSTTCCCBCHHHHHHHHHHHHHS-CCCSCEEEE
T ss_pred             HHHHHHHHHHHccCCeEEEEEecCccCCchhhh-----hhhccccCCCCHHHHHHHHHHhhhc-cccCceEec
Confidence            9987753      38999999999999985321     1111224579999999999888743 345778876

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.94  E-value=4.9e-26  Score=197.74  Aligned_cols=198  Identities=16%  Similarity=0.195  Sum_probs=142.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhc----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIG----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~----  133 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++|+.++.+++...     ....+.++.+|++| .+++.+++.    
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~  107 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRS  107 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC-HHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999987665543211     12468899999999 777666554    


Q ss_pred             ---CCCCEEEEccCCCCC--------CCCCCceeeehHHH----HHHHHHHHHcCC--CEEEEecccccccccCCCCCCc
Q 022216          134 ---DDSEAVVCATGFQPG--------WDLFAPWKVDNFGT----VNLVEACRKRGV--NRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~----~~l~~a~~~~~~--~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                         + +|+||||||....        ++|...+++|+.++    ..+++++++.+.  ++||++||...+...       
T Consensus       108 ~~g~-iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~-------  179 (279)
T 1xg5_A          108 QHSG-VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL-------  179 (279)
T ss_dssp             HHCC-CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-------
T ss_pred             hCCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccC-------
Confidence               5 9999999996532        13455789999994    455555666664  799999999765321       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCceeec----cccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNIIME----TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~~~----~~~~~~~~~v~~~Dva~~  263 (301)
                         +..+...|+.+|.+.+.+.+         ..++++++|+||++.+++........    ........+++++|+|++
T Consensus       180 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~  256 (279)
T 1xg5_A          180 ---PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEA  256 (279)
T ss_dssp             ---SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBCHHHHHHH
T ss_pred             ---CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhhhcccccCCCHHHHHHH
Confidence               12235679999999876543         35899999999999988521110000    000112247899999999


Q ss_pred             HHHHhcCCC
Q 022216          264 AVEALLHPE  272 (301)
Q Consensus       264 ~~~~l~~~~  272 (301)
                      ++.++..+.
T Consensus       257 i~~l~~~~~  265 (279)
T 1xg5_A          257 VIYVLSTPA  265 (279)
T ss_dssp             HHHHHHSCT
T ss_pred             HHHHhcCCc
Confidence            988887654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.93  E-value=6.3e-26  Score=199.23  Aligned_cols=195  Identities=16%  Similarity=0.160  Sum_probs=146.2

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-------  133 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-------  133 (301)
                      +++|+||||||+||||++++++|+++|++|++++|+.+++++...   ....++.++.+|++| .+++.+++.       
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH-LDEMVRLADEAFRLLG  107 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999999877655432   235689999999999 777766654       


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcchhh
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      + +|+||||||+...        ++++..+++|+.|+.++++++.    +.+ .++||++||...+..            
T Consensus       108 ~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  174 (301)
T 3tjr_A          108 G-VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVP------------  174 (301)
T ss_dssp             S-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC------------
T ss_pred             C-CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC------------
Confidence            5 9999999997532        2455678999999999999973    334 469999999875422            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-------ee--c-----cccccccCCCCHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-------IM--E-----TEDTLYEGTISRDQ  259 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-------~~--~-----~~~~~~~~~v~~~D  259 (301)
                      ......|+.+|.+.+.+.+       ..|+++++|+||++.|++.....       ..  .     ........+++++|
T Consensus       175 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ped  254 (301)
T 3tjr_A          175 NAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADD  254 (301)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHHHHC----------------------CCCHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccccccccchhhccccChhhhccccccccCCCCHHH
Confidence            1235779999998886653       35899999999999998532210       00  0     00011124789999


Q ss_pred             HHHHHHHHhcCCC
Q 022216          260 VAEVAVEALLHPE  272 (301)
Q Consensus       260 va~~~~~~l~~~~  272 (301)
                      +|++++.++..+.
T Consensus       255 vA~~i~~~l~~~~  267 (301)
T 3tjr_A          255 VARLTADAILANR  267 (301)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999998764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.93  E-value=1.8e-26  Score=199.02  Aligned_cols=206  Identities=19%  Similarity=0.246  Sum_probs=148.1

Q ss_pred             ccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCc---hhhhccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++|++|||||+  ||||++++++|+++|++|++++|+..   ..+++.... ....++.+|++| .+++.+++..    
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-~~~~~~~~D~~~-~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL-GSDIVLQCDVAE-DASIDTMFAELGKV   84 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT-TCCCEEECCTTC-HHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc-CCcEEEEccCCC-HHHHHHHHHHHHHH
Confidence            568999999999  99999999999999999999999872   222221111 234789999999 7777766541    


Q ss_pred             --CCCEEEEccCCCCC-------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 --DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                        ++|+||||||....             ++|+..+++|+.|++++++++.+.  +.++||++||...+...        
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--------  156 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI--------  156 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC--------
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCC--------
Confidence              39999999996531             235567899999999999999764  12599999998754221        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~  264 (301)
                          ..+..|+.+|.+.+.+.+       ..|+++++|+||++.|++........      ........+.+++|+|+++
T Consensus       157 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v  232 (265)
T 1qsg_A          157 ----PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSA  232 (265)
T ss_dssp             ----TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHH
T ss_pred             ----CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence                224678999999987664       24899999999999998643211000      0001223467999999999


Q ss_pred             HHHhcCCC--CCCcEEEeecC
Q 022216          265 VEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +.++..+.  ..++++++.++
T Consensus       233 ~~l~s~~~~~~tG~~~~vdgG  253 (265)
T 1qsg_A          233 AFLCSDLSAGISGEVVHVDGG  253 (265)
T ss_dssp             HHHTSGGGTTCCSCEEEESTT
T ss_pred             HHHhCchhcCccCCEEEECCC
Confidence            76664322  24677887764

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.93  E-value=1.8e-26  Score=196.68  Aligned_cols=199  Identities=15%  Similarity=0.134  Sum_probs=147.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHH-CCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC----CCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----DSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----~~d~V  139 (301)
                      ++|++|||||+||||++++++|++ .|++|++.+|+.+.       ....+.++.+|++| .+++.+.+..    ++|+|
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~-------~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~id~l   74 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF-------SAENLKFIKADLTK-QQDITNVLDIIKNVSFDGI   74 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC-------CCTTEEEEECCTTC-HHHHHHHHHHTTTCCEEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc-------ccccceEEecCcCC-HHHHHHHHHHHHhCCCCEE
Confidence            578999999999999999999999 78999988887652       22567899999999 7777777641    39999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      |||||....        ++|+..+++|+.|++++++++.+.-  .++||++||...+...            .....|+.
T Consensus        75 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------~~~~~Y~a  142 (244)
T 4e4y_A           75 FLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAK------------PNSFAYTL  142 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCC------------TTBHHHHH
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCC------------CCCchhHH
Confidence            999997532        2355678999999999999986542  2589999998755321            22467899


Q ss_pred             HHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---------------eccccccccCCCCHHHHHHHHHHH
Q 022216          210 AKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---------------METEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       210 sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---------------~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      +|.+.+.+.+       ..|+++++|+||.+.|++......               ..........+.+++|+|++++.+
T Consensus       143 sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l  222 (244)
T 4e4y_A          143 SKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFL  222 (244)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence            9999987654       468999999999999985332110               000111223467999999999776


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..++++++.++
T Consensus       223 ~s~~~~~itG~~i~vdGG  240 (244)
T 4e4y_A          223 LSDKSKFMTGGLIPIDGG  240 (244)
T ss_dssp             HSGGGTTCCSCEEEESTT
T ss_pred             hcCccccccCCeEeECCC
Confidence            65432  35677777664

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.93  E-value=9.3e-26  Score=195.56  Aligned_cols=201  Identities=12%  Similarity=0.090  Sum_probs=143.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc----------ccCCCCeEEEEccCCCChHhHHHH
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----------SKDNPSLQIVKADVTEGSAKLSEA  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~----------~~~~~~~~~~~~Dl~~~~~~~~~~  131 (301)
                      +++++|++|||||+|+||++++++|+++|++|++++|+.++.++..          .....++.++.+|++| .+++.+.
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~   80 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE-EDQVRAA   80 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC-HHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHH
Confidence            4567999999999999999999999999999999999876533211          1124678999999999 7666655


Q ss_pred             hcC------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCC
Q 022216          132 IGD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQI  193 (301)
Q Consensus       132 ~~~------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~  193 (301)
                      +..      ++|+||||||....        ++|+.++++|+.|++++++++..    .+.++||++||...+...    
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----  156 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA----  156 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH----
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC----
Confidence            431      39999999997532        24556789999999999999843    455799999998643210    


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecC-cccCCCCCCceeeccccccccCCCCHHHHHHHHH
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPG-GLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg-~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                            .......|+.+|.+.+.+.+       ..||+++.|+|| .+.+++....   .  ......+.+++|+|++++
T Consensus       157 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~~~---~--~~~~~~~~~pedvA~~v~  225 (274)
T 3e03_A          157 ------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINML---P--GVDAAACRRPEIMADAAH  225 (274)
T ss_dssp             ------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------CCCGGGSBCTHHHHHHHH
T ss_pred             ------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchhhhc---c--cccccccCCHHHHHHHHH
Confidence                  02335679999999986653       368999999999 5777764211   1  111223678999999997


Q ss_pred             HHhcCCC--CCCcEE
Q 022216          266 EALLHPE--SSYKVV  278 (301)
Q Consensus       266 ~~l~~~~--~~~~~~  278 (301)
                      .++..+.  ..|+++
T Consensus       226 ~l~s~~~~~itG~~i  240 (274)
T 3e03_A          226 AVLTREAAGFHGQFL  240 (274)
T ss_dssp             HHHTSCCTTCCSCEE
T ss_pred             HHhCccccccCCeEE
Confidence            6665432  234554

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.93  E-value=3.3e-26  Score=196.27  Aligned_cols=209  Identities=17%  Similarity=0.135  Sum_probs=148.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEE-eCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~-r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ...++|+||||||+||||++++++|+++|++|++++ |+.+...+..   .....++.++.+|++| .+++.+.+..   
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   87 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD-WDSTKQAFDKVKA   87 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC-HHHHHHHHHHHHH
Confidence            345689999999999999999999999999999988 4444433222   1245678999999999 7666665542   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                         ++|+||||||....        ++++..+++|+.|++++++++    ++.+.++||++||...+..           
T Consensus        88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-----------  156 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKG-----------  156 (256)
T ss_dssp             HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGS-----------
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccC-----------
Confidence               39999999997543        234567899999999988877    4456689999999875422           


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHh
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       ......|+.+|.+.+.+.+       ..|+++++|+||.+.+++.......    .........+.+++|+|++++.++
T Consensus       157 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  235 (256)
T 3ezl_A          157 -QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEIGSIVAWLA  235 (256)
T ss_dssp             -CSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHH
T ss_pred             -CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence             1235778999998886653       3689999999999998754321100    000112234679999999997666


Q ss_pred             cCC--CCCCcEEEeecC
Q 022216          269 LHP--ESSYKVVEIISR  283 (301)
Q Consensus       269 ~~~--~~~~~~~~v~~~  283 (301)
                      ...  ...|+++++.++
T Consensus       236 s~~~~~~tG~~i~vdgG  252 (256)
T 3ezl_A          236 SEESGFSTGADFSLNGG  252 (256)
T ss_dssp             SGGGTTCCSCEEEESTT
T ss_pred             CCcccCCcCcEEEECCC
Confidence            432  245778888764

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.93  E-value=4.2e-26  Score=193.40  Aligned_cols=196  Identities=14%  Similarity=0.087  Sum_probs=146.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--------CC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--------DD  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--------~~  135 (301)
                      |++|++|||||+|+||++++++|+++|++|++++|++++..       ....++.+|++| .+++.+++.        ++
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~g~   72 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------DSNILVDGNKNW-TEQEQSILEQTASSLQGSQ   72 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------SEEEECCTTSCH-HHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------cccEEEeCCCCC-HHHHHHHHHHHHHHhCCCC
Confidence            35789999999999999999999999999999999876532       245678899999 666665553        23


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +|+||||||....         ++++..+++|+.++.++++++.+.  ..++||++||...+..            ....
T Consensus        73 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~  140 (236)
T 1ooe_A           73 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP------------TPSM  140 (236)
T ss_dssp             EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTB
T ss_pred             CCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccC------------CCCc
Confidence            9999999996432         134567789999999999999763  2369999999875521            1234


Q ss_pred             hHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC---
Q 022216          205 GLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE---  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---  272 (301)
                      ..|..+|.+.+.+.+         ..|+++++|+||++.|++.....   . ...+..+++++|+|++++.+|.++.   
T Consensus       141 ~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~---~-~~~~~~~~~~~dvA~~i~~~l~s~~~~~  216 (236)
T 1ooe_A          141 IGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWM---P-NADHSSWTPLSFISEHLLKWTTETSSRP  216 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHS---T-TCCGGGCBCHHHHHHHHHHHHHCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcchhhcC---C-CccccccCCHHHHHHHHHHHHcCCCccc
Confidence            679999999987663         23599999999999987532210   1 1112346789999999987885544   


Q ss_pred             CCCcEEEeecC
Q 022216          273 SSYKVVEIISR  283 (301)
Q Consensus       273 ~~~~~~~v~~~  283 (301)
                      ..++.+++.++
T Consensus       217 ~~G~~~~v~gg  227 (236)
T 1ooe_A          217 SSGALLKITTE  227 (236)
T ss_dssp             CTTCEEEEEEE
T ss_pred             ccccEEEEecC
Confidence            34778888764

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.93  E-value=1.5e-25  Score=190.37  Aligned_cols=201  Identities=19%  Similarity=0.181  Sum_probs=145.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCCh------HhHHHHhcCCCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS------AKLSEAIGDDSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~d~V  139 (301)
                      +|++|||||+|+||++++++|+++|++|++++|+.++..+..     ++.++.+|++| .      +.+.+.+++ +|+|
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~-----~~~~~~~D~~~-~~~~~~~~~~~~~~g~-id~l   74 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL-----GAVPLPTDLEK-DDPKGLVKRALEALGG-LHVL   74 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH-----TCEEEECCTTT-SCHHHHHHHHHHHHTS-CCEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhh-----CcEEEecCCch-HHHHHHHHHHHHHcCC-CCEE
Confidence            589999999999999999999999999999999877633222     37889999998 3      223334556 9999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |||||....        ++|+..+++|+.+++++++++    ++.+.++||++||...+....          ..+...|
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------~~~~~~Y  144 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG----------PVPIPAY  144 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------TSCCHHH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC----------CCCCccH
Confidence            999996532        235567899999999999988    345678999999998664321          0224678


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----eec-cccccccCCCCHHHHHHHHHHHhcCCC--
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----IME-TEDTLYEGTISRDQVAEVAVEALLHPE--  272 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~--  272 (301)
                      +.+|.+.+.+.+       ..|+++++|+||++.|++.....     ... ........+.+++|+|++++.++..+.  
T Consensus       145 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~  224 (239)
T 2ekp_A          145 TTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARVAAVLCGDEAEY  224 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcC
Confidence            999999887653       25999999999999998643210     000 001112346799999999976664322  


Q ss_pred             CCCcEEEeecC
Q 022216          273 SSYKVVEIISR  283 (301)
Q Consensus       273 ~~~~~~~v~~~  283 (301)
                      ..++++.+.++
T Consensus       225 ~tG~~~~vdgG  235 (239)
T 2ekp_A          225 LTGQAVAVDGG  235 (239)
T ss_dssp             CCSCEEEESTT
T ss_pred             CCCCEEEECCC
Confidence            35677777663

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.93  E-value=1.4e-26  Score=199.39  Aligned_cols=209  Identities=12%  Similarity=0.120  Sum_probs=144.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch---hhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK---AKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~---~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-  134 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|....   +++..   .....++.++.+|++| .+++.+.+.. 
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~   85 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN-EEEVAKLFDFA   85 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS-HHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHH
Confidence            45679999999999999999999999999999998875432   22221   1235678999999999 7766665541 


Q ss_pred             -----CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchh
Q 022216          135 -----DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                           ++|+||||||+...        ++|+..+++|+.|++++++++.+.  +.++||++||...+...          
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~----------  155 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYT----------  155 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHH----------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCC----------
Confidence                 39999999997542        245567889999999999999764  34699999998755322          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----eeccccccccCCCCHHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----IMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                        .....|..+|.+.+.+.+       ..|++++.|+||.+.+++.....     ...........+.+++|+|++++.+
T Consensus       156 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L  233 (262)
T 3ksu_A          156 --GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIEDIAPIIKFL  233 (262)
T ss_dssp             --CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------CCCCSCCGGGTHHHHHHH
T ss_pred             --CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCchHHHHHHHhcCcccCCCCHHHHHHHHHHH
Confidence              123567788888876553       35899999999999987532211     0011111223467899999999766


Q ss_pred             hcCC-CCCCcEEEeecC
Q 022216          268 LLHP-ESSYKVVEIISR  283 (301)
Q Consensus       268 l~~~-~~~~~~~~v~~~  283 (301)
                      +... ...|+++++.++
T Consensus       234 ~s~~~~itG~~i~vdGg  250 (262)
T 3ksu_A          234 TTDGWWINGQTIFANGG  250 (262)
T ss_dssp             HTTTTTCCSCEEEESTT
T ss_pred             cCCCCCccCCEEEECCC
Confidence            6541 134667777664

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.93  E-value=9.2e-26  Score=194.81  Aligned_cols=208  Identities=19%  Similarity=0.144  Sum_probs=149.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC-Cchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD-LDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~-~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ++.+|+||||||+||||++++++|+++|++|+++.++ .+..++..   .....++.++.+|++| .+++.+.+..    
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVAN-REQCREVLEHEIAQ  101 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999876644 33333222   1245689999999999 7766666541    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH-----HcCCCEEEEecccccccccCCCCCCcchh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~-----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        ++|+||||||....        ++++..+++|+.+++++++++.     +.+.++||++||...+...          
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------  171 (267)
T 4iiu_A          102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGN----------  171 (267)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCC----------
T ss_pred             hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCC----------
Confidence              39999999997543        2455678999999999999873     4556799999998754221          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---ccccccccCCCCHHHHHHHHHHHhc
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---ETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                        .....|+.+|.+.+.+.+       ..|+++++|+||.+.+++.......   .........+.+++|+|++++.++.
T Consensus       172 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~p~~~~~~~edva~~~~~L~s  249 (267)
T 4iiu_A          172 --RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEMEESALKEAMSMIPMKRMGQAEEVAGLASYLMS  249 (267)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHS
T ss_pred             --CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence              234678999998776543       3589999999999999875432100   0011122346799999999976665


Q ss_pred             CC--CCCCcEEEeecC
Q 022216          270 HP--ESSYKVVEIISR  283 (301)
Q Consensus       270 ~~--~~~~~~~~v~~~  283 (301)
                      .+  ...|+++++.++
T Consensus       250 ~~~~~itG~~i~vdGG  265 (267)
T 4iiu_A          250 DIAGYVTRQVISINGG  265 (267)
T ss_dssp             GGGTTCCSCEEEESTT
T ss_pred             CcccCccCCEEEeCCC
Confidence            32  245777777663

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.93  E-value=1.7e-25  Score=198.09  Aligned_cols=197  Identities=20%  Similarity=0.174  Sum_probs=140.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ++++|+||||||+||||++++++|+++|++|++++|+.+++++....     ...++.++.+|++| .+++.+++..   
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~   83 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS-REGFKMAADEVEA   83 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC-HHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999998776554321     12378999999999 7766666542   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----------CCCEEEEecccccccccCCCC
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----------GVNRFILISSILVNGAAMGQI  193 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----------~~~~iV~~SS~~~~~~~~~~~  193 (301)
                         ++|+||||||+...        ++++..+++|+.|+.++++++...          +.++||++||...+...    
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~----  159 (319)
T 3ioy_A           84 RFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAA----  159 (319)
T ss_dssp             HTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCC----
T ss_pred             hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCC----
Confidence               38999999996532        235567899999999999987432          34689999999765422    


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc----------------cccc
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET----------------EDTL  250 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~----------------~~~~  250 (301)
                              .....|..+|.+.+.+.+       ..|+++++|+||++.|++.........                ....
T Consensus       160 --------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (319)
T 3ioy_A          160 --------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGV  231 (319)
T ss_dssp             --------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-----------------------------CCG
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHHHHHHh
Confidence                    123678999996665442       368999999999999986543211000                0011


Q ss_pred             ccCCCCHHHHHHHHHHHhcCCC
Q 022216          251 YEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       251 ~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ....++++|+|+.++.++..+.
T Consensus       232 ~~~~~~pe~vA~~~~~al~~~~  253 (319)
T 3ioy_A          232 HEFGMEPDVIGARVIEAMKANR  253 (319)
T ss_dssp             GGSSBCHHHHHHHHHHHHHTTC
T ss_pred             hhcCCCHHHHHHHHHHHHHcCC
Confidence            1112799999999999998764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.93  E-value=4.3e-26  Score=199.84  Aligned_cols=209  Identities=14%  Similarity=0.126  Sum_probs=151.5

Q ss_pred             hcccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ..+++|++|||||+|  +||++++++|+++|++|++++|+.+..+....  .....+.++.+|++| .+++.+++..   
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  104 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD-AESVDNMFKVLAE  104 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHH
Confidence            456799999999997  99999999999999999999998654332211  112357899999999 7666665542   


Q ss_pred             ---CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcc
Q 022216          135 ---DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                         ++|+||||||+...            ++|+..+++|+.+++++++++...-  .++||++||...+..         
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~---------  175 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKV---------  175 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC---------
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccC---------
Confidence               39999999997531            2456678999999999999996542  369999999875422         


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~  264 (301)
                         ...+..|+.+|.+.+.+.+       ..||+++.|+||++.|++........      ........+.+++|+|+++
T Consensus       176 ---~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v  252 (296)
T 3k31_A          176 ---VPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRNTTLDDVGGAA  252 (296)
T ss_dssp             ---CTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTTSSCCCHHHHHHHH
T ss_pred             ---CCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence               1224678999999887653       35899999999999998754321100      0011223467999999999


Q ss_pred             HHHhcCC--CCCCcEEEeecC
Q 022216          265 VEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~--~~~~~~~~v~~~  283 (301)
                      +.++...  ...|+++++.++
T Consensus       253 ~fL~s~~a~~itG~~i~vdGG  273 (296)
T 3k31_A          253 LYLLSDLGRGTTGETVHVDCG  273 (296)
T ss_dssp             HHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHcCCccCCccCCEEEECCC
Confidence            7666432  245777877664

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.93  E-value=2.1e-25  Score=195.90  Aligned_cols=207  Identities=16%  Similarity=0.158  Sum_probs=146.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--------CCCCeEEEEccCCCChHhHHHHhcC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--------DNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      .+++|+||||||+||||++++++|+++|++|++++|+.++.++...+        ...++.++.+|++| .+++.+++..
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~   93 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVKS   93 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC-HHHHHHHHHH
Confidence            45789999999999999999999999999999999987665432211        24578999999999 7666665542


Q ss_pred             ------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCc
Q 022216          135 ------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 ------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                            ++|+||||||....        +++...+++|+.|+.++++++.+    .+.++||++||.. +.   +.+   
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~---~~~---  166 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KA---GFP---  166 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TT---CCT---
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-cc---CCC---
Confidence                  39999999996432        23455689999999999999754    2347999999986 21   111   


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee------ec-c-ccccccCCCCHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII------ME-T-EDTLYEGTISRDQVA  261 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~------~~-~-~~~~~~~~v~~~Dva  261 (301)
                            ....|..+|.+.+.+.+       ..|+++++|+||+++|++......      .. . .......+.+++|+|
T Consensus       167 ------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA  240 (303)
T 1yxm_A          167 ------LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVS  240 (303)
T ss_dssp             ------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHH
T ss_pred             ------cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcCcccCCCCHHHHH
Confidence                  13456677776664442       359999999999999984211110      00 0 001123467999999


Q ss_pred             HHHHHHhcCCC--CCCcEEEeecC
Q 022216          262 EVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       262 ~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++++.++..+.  ..++++++.++
T Consensus       241 ~~i~~l~~~~~~~~~G~~~~v~gG  264 (303)
T 1yxm_A          241 SVVCFLLSPAASFITGQSVDVDGG  264 (303)
T ss_dssp             HHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHhCcccccCCCcEEEECCC
Confidence            99987775432  45778888774

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.93  E-value=1.3e-25  Score=199.41  Aligned_cols=205  Identities=18%  Similarity=0.110  Sum_probs=148.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEE-eCCchhhhccc----cCCCCeEEEEccCCCChH------------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTTLS----KDNPSLQIVKADVTEGSA------------  126 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~-r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~------------  126 (301)
                      +++|++|||||+||||++++++|+++|++|++++ |+.+.+++...    ....++.++.+|++| .+            
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~  122 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN-VATAPVSGADGSAP  122 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-SCBCC-------CC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCC-chhccccccccccc
Confidence            6789999999999999999999999999999999 88766544322    134678999999999 55            


Q ss_pred             -----hHHHHhc-------CCCCEEEEccCCCCCC----------------------CCCCceeeehHHHHHHHHHHH--
Q 022216          127 -----KLSEAIG-------DDSEAVVCATGFQPGW----------------------DLFAPWKVDNFGTVNLVEACR--  170 (301)
Q Consensus       127 -----~~~~~~~-------~~~d~Vi~~Ag~~~~~----------------------~~~~~~~~N~~g~~~l~~a~~--  170 (301)
                           ++.+++.       . +|+||||||.....                      +|+..+++|+.+++++++++.  
T Consensus       123 ~~~~~~v~~~~~~~~~~~g~-iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  201 (328)
T 2qhx_A          123 VTLFTRCAELVAACYTHWGR-CDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR  201 (328)
T ss_dssp             BCHHHHHHHHHHHHHHHHSC-CCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCC-CCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 6665554       5 99999999965321                      223457899999999999874  


Q ss_pred             --HcC------CCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccC
Q 022216          171 --KRG------VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRN  235 (301)
Q Consensus       171 --~~~------~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~  235 (301)
                        +.+      .++||++||...+..            ......|..+|.+.+.+.+       ..||++++|+||++.|
T Consensus       202 m~~~~~~~~~~~g~IV~isS~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T  269 (328)
T 2qhx_A          202 VAGTPAKHRGTNYSIINMVDAMTNQP------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL  269 (328)
T ss_dssp             HHHSCGGGSCSCEEEEEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSC
T ss_pred             HHhcCCcCCCCCcEEEEECchhhccC------------CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccC
Confidence              334      579999999875432            1234678999999886653       3589999999999999


Q ss_pred             CCCCCceee--c-ccccccc-CCCCHHHHHHHHHHHhcCC--CCCCcEEEeecC
Q 022216          236 EPPTGNIIM--E-TEDTLYE-GTISRDQVAEVAVEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       236 ~~~~~~~~~--~-~~~~~~~-~~v~~~Dva~~~~~~l~~~--~~~~~~~~v~~~  283 (301)
                      ++ ......  . ....... .+.+++|+|++++.++...  ...++++++.++
T Consensus       270 ~~-~~~~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG  322 (328)
T 2qhx_A          270 VD-DMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG  322 (328)
T ss_dssp             CC-CSCHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             Cc-cccHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence            87 321000  0 0011122 4679999999997776432  235677777663

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.93  E-value=2.3e-26  Score=198.70  Aligned_cols=218  Identities=15%  Similarity=0.167  Sum_probs=152.0

Q ss_pred             hcccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCchhhh---ccccCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           62 VSVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        62 ~~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      ..+++|+||||||+  |+||++++++|+++|++|++++|+....+.   +.. ....+.++.+|++| .+++.+.+..  
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~~-~~~v~~~~~~~~   87 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAA-EFGSELVFPCDVAD-DAQIDALFASLK   87 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH-HTTCCCEEECCTTC-HHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHH-HcCCcEEEECCCCC-HHHHHHHHHHHH
Confidence            35578999999999  999999999999999999999988533222   211 22458899999999 7766666542  


Q ss_pred             ----CCCEEEEccCCCCC-------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCC
Q 022216          135 ----DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILN  195 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~-------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~  195 (301)
                          ++|+||||||+...             +++...+++|+.+++++++++.+.  ..++||++||...+..       
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------  160 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA-------  160 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-------
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccC-------
Confidence                39999999997532             124456799999999999999654  2358999999875432       


Q ss_pred             cchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHH
Q 022216          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAE  262 (301)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~  262 (301)
                           ...+..|+.+|.+.+.+.+       ..|++++.|+||++.+++........      ........+.+++|+|+
T Consensus       161 -----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pedva~  235 (271)
T 3ek2_A          161 -----IPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGN  235 (271)
T ss_dssp             -----CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTTSSCCCHHHHHH
T ss_pred             -----CCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCcCCCCCHHHHHH
Confidence                 1235678999999887653       35899999999999998754421100      01112234689999999


Q ss_pred             HHHHHhcCC--CCCCcEEEeecCCCCCCcCHHHHHH
Q 022216          263 VAVEALLHP--ESSYKVVEIISRVDAPKRSYEDLFG  296 (301)
Q Consensus       263 ~~~~~l~~~--~~~~~~~~v~~~~~~~~~s~~e~~~  296 (301)
                      +++.++...  ...|+++++.++   ...++.++.+
T Consensus       236 ~i~~l~s~~~~~~tG~~i~vdgG---~~~~~~~~~~  268 (271)
T 3ek2_A          236 AGAFLLSDLASGVTAEVMHVDSG---FNAVVGGMAG  268 (271)
T ss_dssp             HHHHHHSGGGTTCCSEEEEESTT---GGGBCCCC--
T ss_pred             HHHHHcCcccCCeeeeEEEECCC---eeeehhhhhh
Confidence            997766542  245677777764   6666665543

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.93  E-value=1.2e-25  Score=195.42  Aligned_cols=207  Identities=14%  Similarity=0.183  Sum_probs=151.2

Q ss_pred             cccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCC--chhhhccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDL--DKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      .+++|+||||||+  +|||++++++|+++|++|++++|+.  +..+++.. ...++.++.+|++| .+++.+++..    
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~-~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~  100 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCA-EFNPAAVLPCDVIS-DQEIKDLFVELGKV  100 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHG-GGCCSEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHH-hcCCceEEEeecCC-HHHHHHHHHHHHHH
Confidence            4578999999999  5599999999999999999999987  33333332 23468999999999 7666665532    


Q ss_pred             --CCCEEEEccCCCCC-------------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCc
Q 022216          135 --DSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-------------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                        ++|+||||||+...             +++...+++|+.++.++++++...   +.++||++||...+..        
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--------  172 (280)
T 3nrc_A          101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKA--------  172 (280)
T ss_dssp             CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSC--------
T ss_pred             cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccC--------
Confidence              39999999997532             234557899999999999998543   3479999999875432        


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~  263 (301)
                          ...+..|+.+|.+.+.+.+       ..|++++.|+||++.+++........      ........+.+++|+|++
T Consensus       173 ----~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~  248 (280)
T 3nrc_A          173 ----MPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNT  248 (280)
T ss_dssp             ----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTTCSCCCHHHHHHH
T ss_pred             ----CCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence                1235779999999887653       36899999999999998644321100      001112346899999999


Q ss_pred             HHHHhcCCC--CCCcEEEeecC
Q 022216          264 AVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       264 ~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      ++.++....  ..++++++.++
T Consensus       249 v~~l~s~~~~~~tG~~i~vdgG  270 (280)
T 3nrc_A          249 VAFLCSDMATGITGEVVHVDAG  270 (280)
T ss_dssp             HHHTTSGGGTTCCSCEEEESTT
T ss_pred             HHHHhCcccCCcCCcEEEECCC
Confidence            976665322  45778888764

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.93  E-value=3.7e-26  Score=194.50  Aligned_cols=204  Identities=16%  Similarity=0.158  Sum_probs=146.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-EeCCchhhhccc---cCCCCeEE-EEccCCCChHhHHHHh-------c
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-VRDLDKAKTTLS---KDNPSLQI-VKADVTEGSAKLSEAI-------G  133 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~~---~~~~~~~~-~~~Dl~~~~~~~~~~~-------~  133 (301)
                      +|+||||||+|+||++++++|+++|++|+++ .|+.++.++...   ....++.. +.+|++| .+++.+.+       +
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE-AEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC-HHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999998 777665543321   12346666 9999999 77666654       4


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhc
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                      + +|+||||||....        ++++..+++|+.|++++++++    ++.+.++||++||...+...            
T Consensus        80 ~-~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  146 (245)
T 2ph3_A           80 G-LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGN------------  146 (245)
T ss_dssp             C-CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC------------
T ss_pred             C-CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCC------------
Confidence            6 9999999996542        234567899999977766655    45567899999998644221            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---ec-cccccccCCCCHHHHHHHHHHHhcC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---ME-TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~~-~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .....|..+|.+.+.+.+       ..|+++++|+||++.|++......   .. ........+++++|+|++++.++..
T Consensus       147 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~  226 (245)
T 2ph3_A          147 PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIPAGRFGRPEEVAEAVAFLVSE  226 (245)
T ss_dssp             SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHTSG
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            124678999998886653       248999999999999875332100   00 0011123478999999999877764


Q ss_pred             CC--CCCcEEEeecC
Q 022216          271 PE--SSYKVVEIISR  283 (301)
Q Consensus       271 ~~--~~~~~~~v~~~  283 (301)
                      +.  ..++++++.++
T Consensus       227 ~~~~~~G~~~~v~gg  241 (245)
T 2ph3_A          227 KAGYITGQTLCVDGG  241 (245)
T ss_dssp             GGTTCCSCEEEESTT
T ss_pred             ccccccCCEEEECCC
Confidence            32  34788888764

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.93  E-value=3.5e-26  Score=199.91  Aligned_cols=204  Identities=17%  Similarity=0.116  Sum_probs=147.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEE-eCCchhhhccc----cCCCCeEEEEccCCCChH-----------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTTLS----KDNPSLQIVKADVTEGSA-----------  126 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~-r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~-----------  126 (301)
                      ++++|++|||||+|+||++++++|+++|++|++++ |+.+.+++...    ....++.++.+|++| .+           
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~   84 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN-VATAPVSGADGSA   84 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-SCBCCCC----CC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCC-ccccccccccccc
Confidence            45789999999999999999999999999999999 88766544321    134678999999999 56           


Q ss_pred             ------hHHHHhc-------CCCCEEEEccCCCCC----------------------CCCCCceeeehHHHHHHHHHHH-
Q 022216          127 ------KLSEAIG-------DDSEAVVCATGFQPG----------------------WDLFAPWKVDNFGTVNLVEACR-  170 (301)
Q Consensus       127 ------~~~~~~~-------~~~d~Vi~~Ag~~~~----------------------~~~~~~~~~N~~g~~~l~~a~~-  170 (301)
                            ++.+++.       . +|+||||||....                      ++|+..+++|+.+++++++++. 
T Consensus        85 ~~~~~~~v~~~~~~~~~~~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~  163 (291)
T 1e7w_A           85 PVTLFTRCAELVAACYTHWGR-CDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH  163 (291)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSC-CCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCC-CCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                  6666554       5 9999999996532                      1234567899999999999884 


Q ss_pred             ---HcC------CCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCccc
Q 022216          171 ---KRG------VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLR  234 (301)
Q Consensus       171 ---~~~------~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~  234 (301)
                         +.+      .++||++||...+...            .....|..+|.+.+.+.+       ..||+++.|+||++.
T Consensus       164 ~m~~~~~~~~~~~g~Iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~  231 (291)
T 1e7w_A          164 RVAGTPAKHRGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV  231 (291)
T ss_dssp             HHHTSCGGGSCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBC
T ss_pred             HHHhcCCCCCCCCcEEEEEechhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCcc
Confidence               334      4799999998754321            234678999998886553       368999999999999


Q ss_pred             CCCCCCceeec-----ccccccc-CCCCHHHHHHHHHHHhcCCC--CCCcEEEeecC
Q 022216          235 NEPPTGNIIME-----TEDTLYE-GTISRDQVAEVAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       235 ~~~~~~~~~~~-----~~~~~~~-~~v~~~Dva~~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++ .  ....     ....... .+.+++|+|++++.++..+.  ..++++.+.++
T Consensus       232 T~~-~--~~~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG  285 (291)
T 1e7w_A          232 LVD-D--MPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG  285 (291)
T ss_dssp             CGG-G--SCHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCc-c--CCHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCCcccCccCcEEEECCC
Confidence            987 3  1100     0011122 46789999999977664322  35666666653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.93  E-value=1.7e-25  Score=192.94  Aligned_cols=209  Identities=14%  Similarity=0.150  Sum_probs=150.7

Q ss_pred             hcccCCeEEEEcCCch--HHHHHHHHHHHCCCeEEEEEeCCchhhh---ccccC-CCCeEEEEccCCCChHhHHHHhcC-
Q 022216           62 VSVKQKKIFVAGATGS--SGKRIVEQLLAKGFAVKAGVRDLDKAKT---TLSKD-NPSLQIVKADVTEGSAKLSEAIGD-  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~--iG~~~~~~l~~~G~~V~~~~r~~~~~~~---~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-  134 (301)
                      +++++|++|||||+|+  ||++++++|+++|++|++++|+....+.   +.... ..++.++.+|++| .+++.+.+.. 
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~   81 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN-DAEIETCFASI   81 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS-SHHHHHHHHHH
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC-HHHHHHHHHHH
Confidence            3567999999999966  9999999999999999999988643222   22212 2379999999999 6666555432 


Q ss_pred             -----CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCC
Q 022216          135 -----DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILN  195 (301)
Q Consensus       135 -----~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~  195 (301)
                           ++|+||||||....            +++...+++|+.++.++++++...-  .++||++||...+..       
T Consensus        82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------  154 (266)
T 3oig_A           82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELV-------  154 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC-------
T ss_pred             HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccccc-------
Confidence                 39999999997541            2345567899999999999997642  359999999875422       


Q ss_pred             cchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHH
Q 022216          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAE  262 (301)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~  262 (301)
                           ......|+.+|.+.+.+.+       ..|++++.|+||++.+++........      ........+.+++|+|+
T Consensus       155 -----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~  229 (266)
T 3oig_A          155 -----MPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGD  229 (266)
T ss_dssp             -----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHH
T ss_pred             -----CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCCCCCCCHHHHHH
Confidence                 1235678999999887653       35899999999999997644321100      00112234679999999


Q ss_pred             HHHHHhcCCC--CCCcEEEeecC
Q 022216          263 VAVEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       263 ~~~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +++.++..+.  ..++++++.++
T Consensus       230 ~v~~l~s~~~~~~tG~~i~vdGG  252 (266)
T 3oig_A          230 TAAFLFSDMSRGITGENLHVDSG  252 (266)
T ss_dssp             HHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHcCCchhcCcCCEEEECCC
Confidence            9987775432  45777887764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.93  E-value=3.1e-25  Score=192.57  Aligned_cols=210  Identities=16%  Similarity=0.082  Sum_probs=149.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++++|+||||||+|+||++++++|+++|++|++++|+.+..++...   ....++.++.+|++| .+++.+++.+    
T Consensus        30 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~  108 (279)
T 3ctm_A           30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD-PKSVEETISQQEKD  108 (279)
T ss_dssp             GCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC-HHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998766543321   124578999999999 7666655532    


Q ss_pred             --CCCEEEEccCCCCC-C---------CCCCceeeehHHHH----HHHHHHHHcCCCEEEEecccccccccCCCCCCcch
Q 022216          135 --DSEAVVCATGFQPG-W---------DLFAPWKVDNFGTV----NLVEACRKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~-~---------~~~~~~~~N~~g~~----~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        ++|+||||||.... .         ++...+++|+.|++    .+++.+++.+.++||++||...+...         
T Consensus       109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------  179 (279)
T 3ctm_A          109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN---------  179 (279)
T ss_dssp             HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC----------
T ss_pred             hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC---------
Confidence              39999999996533 1         13346789999955    55555566677899999998754220         


Q ss_pred             hhcchhhHHHHHHHHHHHHHHH-------cCCcEEEEecCcccCCCCCCcee---ec-cccccccCCCCHHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIRK-------SGINYTIIRPGGLRNEPPTGNII---ME-TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~~-------~~i~~~~irpg~v~~~~~~~~~~---~~-~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                       ...+...|+.+|.+.|.+.+.       .+ ++++|+||++.+++......   .. ........+++++|+|++++.+
T Consensus       180 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l  257 (279)
T 3ctm_A          180 -IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQLTPLGREGLTQELVGGYLYL  257 (279)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCCHHHHHHHHHHSTTCSCBCGGGTHHHHHHH
T ss_pred             -CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccChHHHHHHHHhCCccCCcCHHHHHHHHHHH
Confidence             012357899999999977642       46 99999999999987532100   00 0011123478999999999877


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +..+.  ..++++++.++
T Consensus       258 ~s~~~~~~tG~~i~vdgG  275 (279)
T 3ctm_A          258 ASNASTFTTGSDVVIDGG  275 (279)
T ss_dssp             HSGGGTTCCSCEEEESTT
T ss_pred             hCccccCccCCEEEECCC
Confidence            75432  45778888764

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.6e-25  Score=191.25  Aligned_cols=193  Identities=16%  Similarity=0.115  Sum_probs=137.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc---CCCCeEEEEccCCCChHhHHHH--------h
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK---DNPSLQIVKADVTEGSAKLSEA--------I  132 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~--------~  132 (301)
                      +++|++|||||+||||++++++|+++|++|++++|+.+..++...+   ...++.++.+|++| .+++.++        +
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ-ESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999987665543321   23578899999999 6655544        3


Q ss_pred             cCCCCEEEEccC--CC------C-------CCCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCC
Q 022216          133 GDDSEAVVCATG--FQ------P-------GWDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQI  193 (301)
Q Consensus       133 ~~~~d~Vi~~Ag--~~------~-------~~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~  193 (301)
                      +. +|+||||||  ..      .       .++|+..+++|+.+++++++++.    +.+.++||++||...+..     
T Consensus        82 g~-id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----  155 (260)
T 2qq5_A           82 GR-LDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY-----  155 (260)
T ss_dssp             TC-CCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC-----
T ss_pred             CC-ceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC-----
Confidence            45 999999994  21      1       12345677899999988888774    445689999999875421     


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc---c---c---ccccCCCCH
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET---E---D---TLYEGTISR  257 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~---~---~---~~~~~~v~~  257 (301)
                              .+...|+.+|.+.+.+.+       .+|+++++|+||++.|++.........   .   .   .......++
T Consensus       156 --------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  227 (260)
T 2qq5_A          156 --------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETT  227 (260)
T ss_dssp             --------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC----------------------CHHHHH
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhHHHHHHhhhccCCCH
Confidence                    113678999999987653       369999999999999987543211000   0   0   001112478


Q ss_pred             HHHHHHHHHHhcCC
Q 022216          258 DQVAEVAVEALLHP  271 (301)
Q Consensus       258 ~Dva~~~~~~l~~~  271 (301)
                      +|+|++++.++..+
T Consensus       228 e~va~~v~~l~s~~  241 (260)
T 2qq5_A          228 ELSGKCVVALATDP  241 (260)
T ss_dssp             HHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHhcCc
Confidence            99999997666544

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.93  E-value=1.4e-25  Score=194.53  Aligned_cols=206  Identities=14%  Similarity=0.167  Sum_probs=148.3

Q ss_pred             ccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCc---hhhhccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++|++|||||+  ||||++++++|+++|++|++++|+.+   ..+++.... .++.++.+|++| .+++.+++..    
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-~~~~~~~~D~~~-~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL-NSPYVYELDVSK-EEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT-TCCCEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEcCCCC-HHHHHHHHHHHHHH
Confidence            468999999999  99999999999999999999999875   222222111 247899999999 7666665541    


Q ss_pred             --CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcch
Q 022216          135 --DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        ++|+||||||+...            ++|+..+++|+.|++++++++.+.  +.++||++||...+..          
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----------  151 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY----------  151 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB----------
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCC----------
Confidence              39999999996532            235567899999999999999764  1269999999864321          


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~~  265 (301)
                        ...+..|+.+|.+.+.+.+       ..|+++++|+||++.|++.........      .......+.+++|+|++++
T Consensus       152 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~  229 (275)
T 2pd4_A          152 --MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGM  229 (275)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHH
T ss_pred             --CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCcCCCCCHHHHHHHHH
Confidence              1224678999999987654       258999999999999986432110000      0011224679999999997


Q ss_pred             HHhcCCC--CCCcEEEeecC
Q 022216          266 EALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~~--~~~~~~~v~~~  283 (301)
                      .++..+.  ..++++++.++
T Consensus       230 ~l~s~~~~~~tG~~~~vdgg  249 (275)
T 2pd4_A          230 YLLSSLSSGVSGEVHFVDAG  249 (275)
T ss_dssp             HHHSGGGTTCCSCEEEESTT
T ss_pred             HHhCccccCCCCCEEEECCC
Confidence            7765322  35677777664

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.93  E-value=7e-26  Score=198.17  Aligned_cols=207  Identities=13%  Similarity=0.126  Sum_probs=147.0

Q ss_pred             cccCCeEEEEcCCch--HHHHHHHHHHHCCCeEEEEEeCCchhh---hccccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           63 SVKQKKIFVAGATGS--SGKRIVEQLLAKGFAVKAGVRDLDKAK---TTLSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~--iG~~~~~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++|++|||||+|+  ||++++++|+++|++|++++|+....+   ++.. ...++.++.+|++| .+++.+++..   
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dv~d-~~~v~~~~~~~~~  105 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAE-ELGAFVAGHCDVAD-AASIDAVFETLEK  105 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHH-HHTCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH-hcCCceEEECCCCC-HHHHHHHHHHHHH
Confidence            467999999999966  999999999999999999998853222   1111 22468899999999 7666665541   


Q ss_pred             ---CCCEEEEccCCCC------------CCCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 ---DSEAVVCATGFQP------------GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~------------~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                         ++|+||||||+..            .++|+..+++|+.+++++++++.+.  ..++||++||...+...        
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~--------  177 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVM--------  177 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBC--------
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCC--------
Confidence               3999999999753            1245567899999999999999653  23699999998754321        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~  264 (301)
                          ..+..|+.+|.+.+.+.+       ..||+++.|+||++.|++........      ........+.+++|+|+++
T Consensus       178 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v  253 (293)
T 3grk_A          178 ----PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIDEVGDVG  253 (293)
T ss_dssp             ----TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTTSSCCCHHHHHHHH
T ss_pred             ----CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence                224678999999886653       36899999999999998654321100      0011223467999999999


Q ss_pred             HHHhcCCC--CCCcEEEeecC
Q 022216          265 VEALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~~--~~~~~~~v~~~  283 (301)
                      +.++....  ..++++++.++
T Consensus       254 ~~L~s~~~~~itG~~i~vdGG  274 (293)
T 3grk_A          254 LYFLSDLSRSVTGEVHHADSG  274 (293)
T ss_dssp             HHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHcCccccCCcceEEEECCC
Confidence            76664322  45677777664

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.93  E-value=4.3e-25  Score=192.69  Aligned_cols=207  Identities=14%  Similarity=0.137  Sum_probs=144.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhccc----cCCCCeEEEEccCCCC---hHhHHH---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLS----KDNPSLQIVKADVTEG---SAKLSE---  130 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~~----~~~~~~~~~~~Dl~~~---~~~~~~---  130 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|+. ++.++...    ....++.++.+|++|.   .+++.+   
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~   98 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIIN   98 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHH
Confidence            457799999999999999999999999999999999997 55443321    1346789999999982   233333   


Q ss_pred             ----HhcCCCCEEEEccCCCCCCC------------------CCCceeeehHHHHHHHHHHHHc----C------CCEEE
Q 022216          131 ----AIGDDSEAVVCATGFQPGWD------------------LFAPWKVDNFGTVNLVEACRKR----G------VNRFI  178 (301)
Q Consensus       131 ----~~~~~~d~Vi~~Ag~~~~~~------------------~~~~~~~N~~g~~~l~~a~~~~----~------~~~iV  178 (301)
                          .+++ +|+||||||......                  |+..+++|+.+++++++++.+.    +      .++||
T Consensus        99 ~~~~~~g~-iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv  177 (288)
T 2x9g_A           99 SCFRAFGR-CDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIV  177 (288)
T ss_dssp             HHHHHHSC-CCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEE
T ss_pred             HHHHhcCC-CCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEE
Confidence                3446 999999999653221                  2346789999999999988532    2      46999


Q ss_pred             EecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-ec--ccc
Q 022216          179 LISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-ME--TED  248 (301)
Q Consensus       179 ~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-~~--~~~  248 (301)
                      ++||...+..            ......|..+|.+.+.+.+       ..||++++|+||++.|++ ..... ..  ...
T Consensus       178 ~isS~~~~~~------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~~~~~~~~~~~~  244 (288)
T 2x9g_A          178 NLCDAMVDQP------------CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AMGEEEKDKWRRK  244 (288)
T ss_dssp             EECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TSCHHHHHHHHHT
T ss_pred             EEecccccCC------------CCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-ccChHHHHHHHhh
Confidence            9999875432            1234678999998876553       358999999999999997 31100 00  000


Q ss_pred             ccccCC-CCHHHHHHHHHHHhcCC--CCCCcEEEeec
Q 022216          249 TLYEGT-ISRDQVAEVAVEALLHP--ESSYKVVEIIS  282 (301)
Q Consensus       249 ~~~~~~-v~~~Dva~~~~~~l~~~--~~~~~~~~v~~  282 (301)
                      .....+ .+++|+|++++.++...  ...++++.+.+
T Consensus       245 ~p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdG  281 (288)
T 2x9g_A          245 VPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDG  281 (288)
T ss_dssp             CTTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             CCCCCCCCCHHHHHHHHHHHhCccccCccCCEEEECc
Confidence            112234 79999999997776532  23466666655

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.93  E-value=8.8e-26  Score=195.13  Aligned_cols=194  Identities=18%  Similarity=0.149  Sum_probs=145.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHH-CCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-------  133 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-------  133 (301)
                      ++|+||||||+||||++++++|++ .|++|++++|+.++.++...   ....++.++.+|++| .+++.+++.       
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence            579999999999999999999999 99999999998765544321   124578999999999 777776665       


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCC-----------C
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMG-----------Q  192 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~-----------~  192 (301)
                      + +|+||||||....        ++++.++++|+.|++++++++.+..  .++||++||...+.....           .
T Consensus        82 ~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~  160 (276)
T 1wma_A           82 G-LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE  160 (276)
T ss_dssp             S-EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred             C-CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccc
Confidence            6 9999999996532        2334568999999999999997652  259999999877632100           0


Q ss_pred             CCCcchh------------------hcchhhHHHHHHHHHHHHHH-------H----cCCcEEEEecCcccCCCCCCcee
Q 022216          193 ILNPAYI------------------FLNVFGLTLIAKLQAEQYIR-------K----SGINYTIIRPGGLRNEPPTGNII  243 (301)
Q Consensus       193 ~~~~~~~------------------~~~~~~~y~~sK~~~e~~~~-------~----~~i~~~~irpg~v~~~~~~~~~~  243 (301)
                      +..+...                  ...+...|+.+|.+.+.+.+       .    .|+++++|+||++.+++...   
T Consensus       161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~---  237 (276)
T 1wma_A          161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP---  237 (276)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT---
T ss_pred             ccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc---
Confidence            0011100                  01123789999999887653       2    48999999999999987543   


Q ss_pred             eccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          244 METEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       244 ~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                              ..+.+++|+|+.++.++..+
T Consensus       238 --------~~~~~~~~~a~~~~~l~~~~  257 (276)
T 1wma_A          238 --------KATKSPEEGAETPVYLALLP  257 (276)
T ss_dssp             --------TCSBCHHHHTHHHHHHHSCC
T ss_pred             --------cccCChhHhhhhHhhhhcCc
Confidence                    24689999999998888755

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.93  E-value=6.3e-26  Score=190.69  Aligned_cols=191  Identities=13%  Similarity=0.105  Sum_probs=143.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi  140 (301)
                      ++++|++|||||+||||++++++|+++|++|++++|+.+                 +|++| .+++.+.+..  ++|+||
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------~D~~~-~~~v~~~~~~~g~id~lv   64 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------LDISD-EKSVYHYFETIGAFDHLI   64 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------CCTTC-HHHHHHHHHHHCSEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------cCCCC-HHHHHHHHHHhCCCCEEE
Confidence            356899999999999999999999999999999888643                 89999 7777766642  399999


Q ss_pred             EccCCCC-C--------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          141 CATGFQP-G--------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       141 ~~Ag~~~-~--------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      ||||... .        ++|+..+++|+.+++++++++.+.-  .++||++||...+...            .....|..
T Consensus        65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------~~~~~Y~a  132 (223)
T 3uce_A           65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVV------------ANTYVKAA  132 (223)
T ss_dssp             ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCC------------TTCHHHHH
T ss_pred             ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCC------------CCchHHHH
Confidence            9999652 1        2345568999999999999996541  2589999998755321            23467899


Q ss_pred             HHHHHHHHHH----Hc-CCcEEEEecCcccCCCCCCceeec--------cccccccCCCCHHHHHHHHHHHhcCCCCCCc
Q 022216          210 AKLQAEQYIR----KS-GINYTIIRPGGLRNEPPTGNIIME--------TEDTLYEGTISRDQVAEVAVEALLHPESSYK  276 (301)
Q Consensus       210 sK~~~e~~~~----~~-~i~~~~irpg~v~~~~~~~~~~~~--------~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~  276 (301)
                      +|.+.+.+.+    +. .++++.|+||++.+++........        ........+.+++|+|++++.++.++...++
T Consensus       133 sK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~tG~  212 (223)
T 3uce_A          133 INAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPVGKVGEASDIAMAYLFAIQNSYMTGT  212 (223)
T ss_dssp             HHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHHCTTCCSC
T ss_pred             HHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCCCCccCHHHHHHHHHHHccCCCCCCc
Confidence            9999987654    22 399999999999998654321100        0111223467999999999888876666788


Q ss_pred             EEEeecC
Q 022216          277 VVEIISR  283 (301)
Q Consensus       277 ~~~v~~~  283 (301)
                      ++++.++
T Consensus       213 ~i~vdgG  219 (223)
T 3uce_A          213 VIDVDGG  219 (223)
T ss_dssp             EEEESTT
T ss_pred             EEEecCC
Confidence            8888774

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.93  E-value=9.2e-26  Score=192.45  Aligned_cols=189  Identities=16%  Similarity=0.163  Sum_probs=140.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccC--CCChHhHHHHh----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADV--TEGSAKLSEAI----  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl--~~~~~~~~~~~----  132 (301)
                      .+++|++|||||+|+||++++++|+++|++|++++|+.+++++...    ....+..++.+|+  +| .+++.+.+    
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~-~~~~~~~~~~~~   89 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENAT-AQQYRELAARVE   89 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCC-HHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCC-HHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999876654332    1235677888887  77 65555444    


Q ss_pred             ---cCCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCc
Q 022216          133 ---GDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       133 ---~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                         ++ +|+||||||....         ++|+..+++|+.|++++++++    ++.+.++||++||...+...       
T Consensus        90 ~~~g~-id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-------  161 (247)
T 3i1j_A           90 HEFGR-LDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGR-------  161 (247)
T ss_dssp             HHHSC-CSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCC-------
T ss_pred             HhCCC-CCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCC-------
Confidence               45 9999999997422         245567899999999999998    34455799999998754221       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------H-cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHh
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~-~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                           .....|+.+|.+.+.+.+       . .+++++.|+||++.+++.....   . ......+..++|+|++++.++
T Consensus       162 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~~~~~---~-~~~~~~~~~p~dva~~~~~l~  232 (247)
T 3i1j_A          162 -----ANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAY---P-DENPLNNPAPEDIMPVYLYLM  232 (247)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHHHHHS---T-TSCGGGSCCGGGGTHHHHHHH
T ss_pred             -----CCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccchhcc---c-ccCccCCCCHHHHHHHHHHHh
Confidence                 224678999999886653       2 5899999999999987532211   1 111224678999999996655


Q ss_pred             c
Q 022216          269 L  269 (301)
Q Consensus       269 ~  269 (301)
                      .
T Consensus       233 s  233 (247)
T 3i1j_A          233 G  233 (247)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.93  E-value=3.1e-25  Score=189.81  Aligned_cols=192  Identities=15%  Similarity=0.124  Sum_probs=147.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d~V  139 (301)
                      +|+||||||+|+||++++++|+++|++|++++|+.++..         ...+.+|++| .+++.+++..      ++|+|
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~---------~~~~~~d~~d-~~~v~~~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA---------DHSFTIKDSG-EEEIKSVIEKINSKSIKVDTF   91 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------SEEEECSCSS-HHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------ccceEEEeCC-HHHHHHHHHHHHHHcCCCCEE
Confidence            689999999999999999999999999999999876533         2357889999 7666665532      48999


Q ss_pred             EEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHcC--CCEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          140 VCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       140 i~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      |||||....         +++...+++|+.|+.++++++.+.-  .++||++||...+..            ......|+
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------~~~~~~Y~  159 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNR------------TSGMIAYG  159 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTBHHHH
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccC------------CCCCchhH
Confidence            999996432         2345678899999999999996542  258999999875421            12357899


Q ss_pred             HHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcC---CCCCCc
Q 022216          209 IAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLH---PESSYK  276 (301)
Q Consensus       209 ~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~---~~~~~~  276 (301)
                      .+|.+.+.+.+         ..|+++++|+||++.+++....    ........+++++|+|++++.++..   ....|+
T Consensus       160 ~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~  235 (251)
T 3orf_A          160 ATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRKY----MSDANFDDWTPLSEVAEKLFEWSTNSDSRPTNGS  235 (251)
T ss_dssp             HHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHHH----CTTSCGGGSBCHHHHHHHHHHHHHCGGGCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhhh----cccccccccCCHHHHHHHHHHHhcCccccCCcce
Confidence            99999987664         2589999999999998753221    1112234578999999999888877   345788


Q ss_pred             EEEeecC
Q 022216          277 VVEIISR  283 (301)
Q Consensus       277 ~~~v~~~  283 (301)
                      ++++..+
T Consensus       236 ~i~v~~g  242 (251)
T 3orf_A          236 LVKFETK  242 (251)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecC
Confidence            9998886

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.92  E-value=3.1e-25  Score=188.68  Aligned_cols=196  Identities=14%  Similarity=0.140  Sum_probs=146.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--------CC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--------DD  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--------~~  135 (301)
                      .++|++|||||+|+||++++++|+++|++|++++|+++...       ....++.+|++| .+++.+.+.        ++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~g~   76 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------SASVIVKMTDSF-TEQADQVTAEVGKLLGDQK   76 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------SEEEECCCCSCH-HHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------CCcEEEEcCCCC-HHHHHHHHHHHHHHhCCCC
Confidence            35799999999999999999999999999999999876532       245678899999 766665553        23


Q ss_pred             CCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          136 SEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +|+||||||....         ++++..+++|+.+++++++++.+.  ..++||++||...+...            ...
T Consensus        77 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~  144 (241)
T 1dhr_A           77 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT------------PGM  144 (241)
T ss_dssp             EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------TTB
T ss_pred             CCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCC------------CCc
Confidence            9999999996532         124556789999999999999653  12699999998765321            224


Q ss_pred             hHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC--C
Q 022216          205 GLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE--S  273 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~  273 (301)
                      ..|..+|.+.+.+.+         ..|+++++|+||++.+++.....   . ...+..+++++|+|++++.++....  .
T Consensus       145 ~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~~~~~---~-~~~~~~~~~~~~vA~~v~~l~~~~~~~~  220 (241)
T 1dhr_A          145 IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSM---P-EADFSSWTPLEFLVETFHDWITGNKRPN  220 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHS---T-TSCGGGSEEHHHHHHHHHHHHTTTTCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccccccC---c-chhhccCCCHHHHHHHHHHHhcCCCcCc
Confidence            679999999987664         34699999999999987532210   1 1112346789999999987775432  3


Q ss_pred             CCcEEEeecC
Q 022216          274 SYKVVEIISR  283 (301)
Q Consensus       274 ~~~~~~v~~~  283 (301)
                      .++.+.+.++
T Consensus       221 ~G~~~~v~g~  230 (241)
T 1dhr_A          221 SGSLIQVVTT  230 (241)
T ss_dssp             TTCEEEEEEE
T ss_pred             cceEEEEeCC
Confidence            5778887764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.92  E-value=2.2e-25  Score=190.96  Aligned_cols=207  Identities=16%  Similarity=0.150  Sum_probs=150.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEE-eCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV-RDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~-r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++|++|||||+|+||++++++|+++|++|+++. |+.+..++..   .....++.++.+|++| .+++.+.+..     
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES-LHGVEALYSSLDNEL   83 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCC-HHHHHHHHHHHHHHh
Confidence            5689999999999999999999999999999874 4444443322   1245678899999999 6666555432     


Q ss_pred             -------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcc
Q 022216          135 -------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPA  197 (301)
Q Consensus       135 -------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~  197 (301)
                             ++|+||||||+...        ++++..+++|+.|++++++++.+.  +.++||++||...+...        
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~--------  155 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL--------  155 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCC--------
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCC--------
Confidence                   29999999997542        234567889999999999999654  33699999998754321        


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~  264 (301)
                          .....|+.+|.+.+.+.+       ..|++++.|+||++.+++........      ........+.+++|+|+++
T Consensus       156 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~  231 (255)
T 3icc_A          156 ----PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTA  231 (255)
T ss_dssp             ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTTSSCBCHHHHHHHH
T ss_pred             ----CCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCCcCCCCCHHHHHHHH
Confidence                224779999999887653       35899999999999998755432110      0111223467899999999


Q ss_pred             HHHhcCC--CCCCcEEEeecC
Q 022216          265 VEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       265 ~~~l~~~--~~~~~~~~v~~~  283 (301)
                      +.++...  ...|+++++.++
T Consensus       232 ~~l~s~~~~~~tG~~i~vdgG  252 (255)
T 3icc_A          232 AFLASPDSRWVTGQLIDVSGG  252 (255)
T ss_dssp             HHHHSGGGTTCCSCEEEESSS
T ss_pred             HHHhCcccCCccCCEEEecCC
Confidence            7666432  245778888764

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.92  E-value=7.1e-25  Score=189.01  Aligned_cols=196  Identities=15%  Similarity=0.173  Sum_probs=146.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCC---CeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhc---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIG---  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G---~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~---  133 (301)
                      ..+++|+||||||+|+||++++++|+++|   ++|++++|+.++.+.+..  ....++.++.+|++| .+++.+++.   
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~   95 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIE   95 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCC-hHHHHHHHHHHH
Confidence            45678999999999999999999999999   999999998765443211  123579999999999 776666664   


Q ss_pred             ------CCCCEEEEccCCCC-C--------CCCCCceeeehHHHHHHHHHHHHc----------C-----CCEEEEeccc
Q 022216          134 ------DDSEAVVCATGFQP-G--------WDLFAPWKVDNFGTVNLVEACRKR----------G-----VNRFILISSI  183 (301)
Q Consensus       134 ------~~~d~Vi~~Ag~~~-~--------~~~~~~~~~N~~g~~~l~~a~~~~----------~-----~~~iV~~SS~  183 (301)
                            + +|+||||||... .        +++...+++|+.+++++++++.+.          +     .++||++||.
T Consensus        96 ~~~g~~~-id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  174 (267)
T 1sny_A           96 GVTKDQG-LNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI  174 (267)
T ss_dssp             HHHGGGC-CSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred             HhcCCCC-ccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence                  6 999999999754 1        234557899999999999988432          2     4799999999


Q ss_pred             ccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCC
Q 022216          184 LVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTIS  256 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~  256 (301)
                      ..+.....         ..+...|+.+|.+.+.+.+       ..|+++++|+||++.+++...           ..+++
T Consensus       175 ~~~~~~~~---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----------~~~~~  234 (267)
T 1sny_A          175 LGSIQGNT---------DGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS-----------SAPLD  234 (267)
T ss_dssp             GGCSTTCC---------SCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT-----------TCSBC
T ss_pred             cccccCCC---------CCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC-----------CCCCC
Confidence            76543211         1124579999999987664       258999999999999987532           14688


Q ss_pred             HHHHHHHHHHHhcCCC--CCCcEEE
Q 022216          257 RDQVAEVAVEALLHPE--SSYKVVE  279 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~--~~~~~~~  279 (301)
                      ++|+|+.++.++..+.  ..+..+.
T Consensus       235 ~~~~a~~~~~~~~~~~~~~~G~~~~  259 (267)
T 1sny_A          235 VPTSTGQIVQTISKLGEKQNGGFVN  259 (267)
T ss_dssp             HHHHHHHHHHHHHHCCGGGTTCEEC
T ss_pred             HHHHHHHHHHHHHhcCcCCCCcEEc
Confidence            9999999998887542  3444443

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.92  E-value=5.9e-25  Score=196.38  Aligned_cols=201  Identities=17%  Similarity=0.152  Sum_probs=146.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc----------cccCCCCeEEEEccCCCChHhHHHH
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT----------LSKDNPSLQIVKADVTEGSAKLSEA  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~----------~~~~~~~~~~~~~Dl~~~~~~~~~~  131 (301)
                      .++++|+||||||+|+||++++++|+++|++|++++|+.++.+++          ......++.++.+|++| .+++.++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~  119 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD-EQQISAA  119 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHH
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHH
Confidence            467899999999999999999999999999999999998753221          11235678999999999 7666665


Q ss_pred             hc-------CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCC
Q 022216          132 IG-------DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       132 ~~-------~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~  192 (301)
                      +.       + +|+||||||+...        ++|+.++++|+.|++++++++.    +.+.++||++||...+...   
T Consensus       120 ~~~~~~~~g~-iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~---  195 (346)
T 3kvo_A          120 VEKAIKKFGG-IDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV---  195 (346)
T ss_dssp             HHHHHHHHSC-CCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG---
T ss_pred             HHHHHHHcCC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC---
Confidence            54       5 9999999997542        2345678999999999999983    3456799999998754321   


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH----H--cCCcEEEEecCc-ccCCCCCCceeeccccccccCCCCHHHHHHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR----K--SGINYTIIRPGG-LRNEPPTGNIIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~----~--~~i~~~~irpg~-v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                             .......|..+|.+.+.+.+    +  .||+++.|.||. +.+++...    .........+.+++|+|++++
T Consensus       196 -------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~~~~~----~~~~~~~~r~~~pedvA~~v~  264 (346)
T 3kvo_A          196 -------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTAAMDM----LGGPGIESQCRKVDIIADAAY  264 (346)
T ss_dssp             -------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCHHHHH----HCC--CGGGCBCTHHHHHHHH
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccHHHHh----hccccccccCCCHHHHHHHHH
Confidence                   01235779999999886653    2  589999999996 66543211    011112234678999999998


Q ss_pred             HHhcCCC-CCCcEE
Q 022216          266 EALLHPE-SSYKVV  278 (301)
Q Consensus       266 ~~l~~~~-~~~~~~  278 (301)
                      .++.... ..|+++
T Consensus       265 ~L~s~~~~itG~~i  278 (346)
T 3kvo_A          265 SIFQKPKSFTGNFV  278 (346)
T ss_dssp             HHHTSCTTCCSCEE
T ss_pred             HHHhcCCCCCceEE
Confidence            7776522 244444

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.92  E-value=5.7e-25  Score=189.74  Aligned_cols=211  Identities=15%  Similarity=0.062  Sum_probs=151.5

Q ss_pred             hcccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCchh-hh----ccccCCCCeEEEEccCCCChHhHHHHhcC
Q 022216           62 VSVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        62 ~~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      +++++|++|||||+  |+||++++++|+++|++|++++|+..+. ++    +......++.++.+|++| .+++.+++..
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~   94 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDS-YESCEKLVKD   94 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTC-HHHHHHHHHH
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCC-HHHHHHHHHH
Confidence            56789999999999  9999999999999999999998886543 22    111135689999999999 7666655532


Q ss_pred             ------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCc
Q 022216          135 ------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 ------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                            ++|+||||||+...        ++|+..+++|+.|++++++++    ++.+.++||++||...+.....     
T Consensus        95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-----  169 (267)
T 3gdg_A           95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFP-----  169 (267)
T ss_dssp             HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSS-----
T ss_pred             HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCC-----
Confidence                  39999999997543        234567899999999999988    4556689999999875422110     


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH----H--cCCcEEEEecCcccCCCCCCcee----eccccccccCCCCHHHHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR----K--SGINYTIIRPGGLRNEPPTGNII----METEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~----~--~~i~~~~irpg~v~~~~~~~~~~----~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                           .....|+.+|.+.+.+.+    +  ..++++.|.||++.+++......    ..........+.+++|+|++++.
T Consensus       170 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~r~~~~~dva~~~~~  244 (267)
T 3gdg_A          170 -----QEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAKELKGAYVY  244 (267)
T ss_dssp             -----SCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGSCHHHHHHHHTTSTTSSCEETHHHHHHHHH
T ss_pred             -----CCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhCCHHHHHHHHhcCCCCCCcCHHHHHhHhhe
Confidence                 124679999999987664    2  23899999999999986532210    00111122345679999999976


Q ss_pred             HhcCCC--CCCcEEEeecC
Q 022216          267 ALLHPE--SSYKVVEIISR  283 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~~  283 (301)
                      ++....  ..|+++++.++
T Consensus       245 l~s~~~~~itG~~i~vdgG  263 (267)
T 3gdg_A          245 FASDASTYTTGADLLIDGG  263 (267)
T ss_dssp             HHSTTCTTCCSCEEEESTT
T ss_pred             eecCccccccCCEEEECCc
Confidence            664322  45677777664

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.92  E-value=1.3e-25  Score=194.13  Aligned_cols=203  Identities=15%  Similarity=0.146  Sum_probs=145.2

Q ss_pred             ccCCeEEEEcC--CchHHHHHHHHHHHCCCeEEEEEeCCchh-hhccccCCCCeEEEEccCCCChHhHHHHhc-------
Q 022216           64 VKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------  133 (301)
Q Consensus        64 ~~~~~vlVtGa--tG~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------  133 (301)
                      +++|++|||||  +|+||++++++|+++|++|++++|+.++. ++.......++.++.+|++| .+++.+.+.       
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEAIG   83 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            56899999999  99999999999999999999999987653 44433334578899999999 766665554       


Q ss_pred             ---CCCCEEEEccCCCCC-------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCC
Q 022216          134 ---DDSEAVVCATGFQPG-------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILN  195 (301)
Q Consensus       134 ---~~~d~Vi~~Ag~~~~-------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~  195 (301)
                         . +|+||||||....             ++|+..+++|+.+++++++++.+.  ..++||++||...++        
T Consensus        84 ~~~~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~--------  154 (269)
T 2h7i_A           84 AGNK-LDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--------  154 (269)
T ss_dssp             TTCC-EEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC--------
T ss_pred             CCCC-ceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc--------
Confidence               6 9999999996541             234556889999999999999653  126999999975321        


Q ss_pred             cchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----e----------eccccccc-c
Q 022216          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----I----------METEDTLY-E  252 (301)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~----------~~~~~~~~-~  252 (301)
                           ...+..|+.+|.+.+.+.+       ..|++++.|+||++.|++.....     .          ........ .
T Consensus       155 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  229 (269)
T 2h7i_A          155 -----MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIG  229 (269)
T ss_dssp             -----CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             -----cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccCCcc
Confidence                 1225778999999886653       35899999999999987422100     0          00001111 2


Q ss_pred             -CCCCHHHHHHHHHHHhcCCCC---CCcEEEeec
Q 022216          253 -GTISRDQVAEVAVEALLHPES---SYKVVEIIS  282 (301)
Q Consensus       253 -~~v~~~Dva~~~~~~l~~~~~---~~~~~~v~~  282 (301)
                       .+..++|+|++++.++ ++..   .|+++.+.+
T Consensus       230 rr~~~p~dvA~~v~~L~-s~~~~~itG~~i~vdG  262 (269)
T 2h7i_A          230 WNMKDATPVAKTVCALL-SDWLPATTGDIIYADG  262 (269)
T ss_dssp             CCTTCCHHHHHHHHHHH-SSSCTTCCSEEEEEST
T ss_pred             cCCCCHHHHHHHHHHHh-CchhccCcceEEEecC
Confidence             3678999999996555 4443   345555544

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.92  E-value=1e-24  Score=190.08  Aligned_cols=192  Identities=13%  Similarity=0.149  Sum_probs=142.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      .+++|+||||||+||||++++++|+++|++|++++|+.+++++....    ...++.++.+|++| .+++.+.+.     
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED-MTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC-HHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998766543321    22468899999999 766665553     


Q ss_pred             --CCCCEEEEc-cCCCCC-------CCCCCceeeehHHHHHHHHHHHHc---CCCEEEEecccccccccCCCCCCcchhh
Q 022216          134 --DDSEAVVCA-TGFQPG-------WDLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 --~~~d~Vi~~-Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        + +|+|||| ||....       +++...+++|+.|+.++++++.+.   +.++||++||.+.+...           
T Consensus       104 ~g~-iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~-----------  171 (286)
T 1xu9_A          104 MGG-LDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAY-----------  171 (286)
T ss_dssp             HTS-CSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCC-----------
T ss_pred             cCC-CCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCC-----------
Confidence              5 9999999 565432       123456799999999999988432   23799999998754321           


Q ss_pred             cchhhHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          201 LNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                       .....|+.+|.+.+.+.+         ..++++++|+||++.|++.....    ........++++|+|+.++.++..+
T Consensus       172 -~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~~~~vA~~i~~~~~~~  246 (286)
T 1xu9_A          172 -PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAV----SGIVHMQAAPKEECALEIIKGGALR  246 (286)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHS----CGGGGGGCBCHHHHHHHHHHHHHTT
T ss_pred             -CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhc----cccccCCCCCHHHHHHHHHHHHhcC
Confidence             224678999998876542         24899999999999987532211    0111234689999999999998765


Q ss_pred             C
Q 022216          272 E  272 (301)
Q Consensus       272 ~  272 (301)
                      .
T Consensus       247 ~  247 (286)
T 1xu9_A          247 Q  247 (286)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.91  E-value=1.4e-24  Score=191.05  Aligned_cols=198  Identities=21%  Similarity=0.214  Sum_probs=142.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHH-------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEA-------  131 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~-------  131 (301)
                      .+++|+||||||+||||++++++|+++|++|++++|+.++.++...    ....++.++.+|++|..+++.++       
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            4568999999999999999999999999999999999876544322    23457999999999931444443       


Q ss_pred             hcCCCCEEEEccCCCCC--------------------------------------CCCCCceeeehHHHHHHHHHHH---
Q 022216          132 IGDDSEAVVCATGFQPG--------------------------------------WDLFAPWKVDNFGTVNLVEACR---  170 (301)
Q Consensus       132 ~~~~~d~Vi~~Ag~~~~--------------------------------------~~~~~~~~~N~~g~~~l~~a~~---  170 (301)
                      +++ +|+||||||+...                                      ++++..+++|+.|++++++++.   
T Consensus        89 ~g~-iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l  167 (311)
T 3o26_A           89 FGK-LDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL  167 (311)
T ss_dssp             HSS-CCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCC-CCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence            345 9999999997531                                      1234458999999999999884   


Q ss_pred             -HcCCCEEEEecccccccccCCCC-----------CC--------------------cchhhcchhhHHHHHHHHHHHHH
Q 022216          171 -KRGVNRFILISSILVNGAAMGQI-----------LN--------------------PAYIFLNVFGLTLIAKLQAEQYI  218 (301)
Q Consensus       171 -~~~~~~iV~~SS~~~~~~~~~~~-----------~~--------------------~~~~~~~~~~~y~~sK~~~e~~~  218 (301)
                       +.+.++||++||...+.......           ..                    ...........|+.+|.+.+.+.
T Consensus       168 ~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~  247 (311)
T 3o26_A          168 QLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYT  247 (311)
T ss_dssp             TTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHH
Confidence             34557999999987643221100           00                    00000123468999999999766


Q ss_pred             H----H-cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          219 R----K-SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       219 ~----~-~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +    + .+++++.|+||++.|++..+.           ...++++.|+.++.++..+.
T Consensus       248 ~~la~e~~~i~v~~v~PG~v~T~~~~~~-----------~~~~~~~~a~~~~~~~~~~~  295 (311)
T 3o26_A          248 RVLANKIPKFQVNCVCPGLVKTEMNYGI-----------GNYTAEEGAEHVVRIALFPD  295 (311)
T ss_dssp             HHHHHHCTTSEEEEECCCSBCSGGGTTC-----------CSBCHHHHHHHHHHHHTCCS
T ss_pred             HHHHhhcCCceEEEecCCceecCCcCCC-----------CCCCHHHHHHHHHHHHhCCC
Confidence            4    2 369999999999999864331           34689999999998887654

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.91  E-value=3.4e-24  Score=183.69  Aligned_cols=201  Identities=17%  Similarity=0.107  Sum_probs=138.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCCh----HhHHHHhcCCCCEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGS----AKLSEAIGDDSEAVV  140 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~----~~~~~~~~~~~d~Vi  140 (301)
                      |++|||||+|+||++++++|+++|++|++++|+.++.++...  ....++..+  |..+ -    +.+.+.+++ +|+||
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~~~-v~~~~~~~~~~~g~-iD~lv   77 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPM--SEQE-PAELIEAVTSAYGQ-VDVLV   77 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEEC--CCCS-HHHHHHHHHHHHSC-CCEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE--CHHH-HHHHHHHHHHHhCC-CCEEE
Confidence            689999999999999999999999999999998766543321  112334433  4443 2    233334456 99999


Q ss_pred             EccCCC-CC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          141 CATGFQ-PG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       141 ~~Ag~~-~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      ||||.. ..        ++|+..+++|+.|++++++++.    +.+.++||++||...+...            .....|
T Consensus        78 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~~~~~Y  145 (254)
T 1zmt_A           78 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW------------KELSTY  145 (254)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC------------TTCHHH
T ss_pred             ECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCC------------CCchHH
Confidence            999976 32        2355678999999999999873    4456899999998754321            224678


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec---c---------ccccccCCCCHHHHHHHHHHHh
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME---T---------EDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~---~---------~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      ..+|.+.+.+.+       ..|+++++|+||+++|+.........   .         .......+.+++|+|++++.++
T Consensus       146 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~  225 (254)
T 1zmt_A          146 TSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLA  225 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCCCCCCcCHHHHHHHHHHHh
Confidence            999999886653       35899999999999554322111000   0         0011224679999999997776


Q ss_pred             cCCC--CCCcEEEeecC
Q 022216          269 LHPE--SSYKVVEIISR  283 (301)
Q Consensus       269 ~~~~--~~~~~~~v~~~  283 (301)
                      ..+.  ..++++++.++
T Consensus       226 s~~~~~~tG~~~~vdgG  242 (254)
T 1zmt_A          226 SGSCDYLTGQVFWLAGG  242 (254)
T ss_dssp             TTSCGGGTTCEEEESTT
T ss_pred             CcccCCccCCEEEECCC
Confidence            5433  35777877664

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.91  E-value=4.8e-25  Score=189.45  Aligned_cols=195  Identities=12%  Similarity=0.102  Sum_probs=142.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHH---CCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLA---KGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~---~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      ++++|++|||||+|+||++++++|++   +|++|++++|+.+.+++...+     ...++.++.+|++| .+++.+++..
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~   81 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-EAGVQRLLSA   81 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-HHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC-HHHHHHHHHH
Confidence            46789999999999999999999999   899999999987765543321     14578999999999 7666655421


Q ss_pred             --------CCC--EEEEccCCCCC-----------CCCCCceeeehHHHHHHHHHHHHc------CCCEEEEeccccccc
Q 022216          135 --------DSE--AVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACRKR------GVNRFILISSILVNG  187 (301)
Q Consensus       135 --------~~d--~Vi~~Ag~~~~-----------~~~~~~~~~N~~g~~~l~~a~~~~------~~~~iV~~SS~~~~~  187 (301)
                              ++|  +||||||+...           ++|+.++++|+.|++++++++.+.      +.++||++||...+.
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~  161 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence                    378  99999996421           234567899999999999999543      236899999987653


Q ss_pred             ccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH-----cCCcEEEEecCcccCCCCCCcee---ec-----c-ccccccC
Q 022216          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-----SGINYTIIRPGGLRNEPPTGNII---ME-----T-EDTLYEG  253 (301)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-----~~i~~~~irpg~v~~~~~~~~~~---~~-----~-~~~~~~~  253 (301)
                      .            ......|+.+|.+.+.+.+.     .+++++.|+||++.+++......   ..     . .......
T Consensus       162 ~------------~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~~  229 (259)
T 1oaa_A          162 P------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGA  229 (259)
T ss_dssp             C------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTC
T ss_pred             C------------CCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHHHHHhhhcCC
Confidence            2            12346799999999876642     25999999999999875322100   00     0 0011234


Q ss_pred             CCCHHHHHHHHHHHhcC
Q 022216          254 TISRDQVAEVAVEALLH  270 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~  270 (301)
                      +.+++|+|++++.++..
T Consensus       230 ~~~p~dvA~~v~~l~~~  246 (259)
T 1oaa_A          230 LVDCGTSAQKLLGLLQK  246 (259)
T ss_dssp             SBCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhh
Confidence            78999999999877753

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.91  E-value=2.5e-24  Score=183.38  Aligned_cols=201  Identities=14%  Similarity=0.093  Sum_probs=137.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEE-E--eCCchhhhccccCCCCeEEEEccCCCChHhH----HHHhcCCCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAG-V--RDLDKAKTTLSKDNPSLQIVKADVTEGSAKL----SEAIGDDSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~----~~~~~~~~d~  138 (301)
                      +|++|||||+|+||++++++|+++|++|+++ +  |+.+++++..... .+..+.  |..+ -+.+    .+.+++ +|+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~-~~~~~~--~~~~-v~~~~~~~~~~~g~-iD~   75 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN-PGTIAL--AEQK-PERLVDATLQHGEA-IDT   75 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS-TTEEEC--CCCC-GGGHHHHHGGGSSC-EEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh-CCCccc--CHHH-HHHHHHHHHHHcCC-CCE
Confidence            4799999999999999999999999999998 6  8877665543322 222222  3333 2222    223345 999


Q ss_pred             EEEccCCCCC-----------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          139 VVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       139 Vi~~Ag~~~~-----------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      ||||||....           ++|+.++++|+.|++++++++.    +.+.++||++||...+...            ..
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------------~~  143 (244)
T 1zmo_A           76 IVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPL------------AY  143 (244)
T ss_dssp             EEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC------------TT
T ss_pred             EEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCC------------CC
Confidence            9999996533           2345578999999999999884    4556899999998755321            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCC---CCce----eecc-c-cccccCCCCHHHHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPP---TGNI----IMET-E-DTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~---~~~~----~~~~-~-~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ...|..+|.+.+.+.+       ..|+++++|+||++.+++.   ....    .... . ......+.+++|+|++++.+
T Consensus       144 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pe~vA~~v~~l  223 (244)
T 1zmo_A          144 NPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMGALITFL  223 (244)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHHCTTCSCBCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Confidence            4578899998886653       3589999999999999875   2210    0000 0 11123467999999999777


Q ss_pred             hcCCC--CCCcEEEeecC
Q 022216          268 LLHPE--SSYKVVEIISR  283 (301)
Q Consensus       268 l~~~~--~~~~~~~v~~~  283 (301)
                      +....  ..++++.+.++
T Consensus       224 ~s~~~~~~tG~~i~vdgG  241 (244)
T 1zmo_A          224 ASRRAAPIVGQFFAFTGG  241 (244)
T ss_dssp             HTTTTGGGTTCEEEESTT
T ss_pred             cCccccCccCCEEEeCCC
Confidence            65432  34667776653

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.91  E-value=2.5e-24  Score=191.17  Aligned_cols=194  Identities=19%  Similarity=0.224  Sum_probs=140.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---------cCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---------KDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---------~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      +|+||||||+||||++++++|+++|++|+++.|+....+....         ....++.++.+|++| .+++.+++..  
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCC-HHHHHHHHHHHh
Confidence            6899999999999999999999999999888887554332111         123578999999999 8888887754  


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|+||||||+...        ++++.++++|+.|++++++++    ++.+.++||++||...+...           
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~-----------  149 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL-----------  149 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-----------
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCC-----------
Confidence              49999999996432        235567899999999999996    44566899999998754221           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----c-cc--------------ccccC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----T-ED--------------TLYEG  253 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~-~~--------------~~~~~  253 (301)
                       .....|..+|.+.+.+.+       ..||++++|+||++.|++........     . ..              .....
T Consensus       150 -~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (327)
T 1jtv_A          150 -PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFRE  228 (327)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHHHHHHHhhhh
Confidence             124678999999987653       36999999999999998754321100     0 00              00011


Q ss_pred             -CCCHHHHHHHHHHHhcCCC
Q 022216          254 -TISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       254 -~v~~~Dva~~~~~~l~~~~  272 (301)
                       .++++|+|++++.++.++.
T Consensus       229 ~~~~pedvA~~i~~l~~~~~  248 (327)
T 1jtv_A          229 AAQNPEEVAEVFLTALRAPK  248 (327)
T ss_dssp             HCBCHHHHHHHHHHHHHCSS
T ss_pred             cCCCHHHHHHHHHHHHcCCC
Confidence             2589999999998887653

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.91  E-value=2.8e-24  Score=198.44  Aligned_cols=205  Identities=18%  Similarity=0.097  Sum_probs=143.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch--hhhccccCCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      .+++|++|||||+|+||+++++.|+++|++|++++|+...  ..+..  ...++.++.+|++| .+++.+.+..      
T Consensus       210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~--~~~~~~~~~~Dvtd-~~~v~~~~~~~~~~~g  286 (454)
T 3u0b_A          210 PLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVA--DKVGGTALTLDVTA-DDAVDKITAHVTEHHG  286 (454)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH--HHHTCEEEECCTTS-TTHHHHHHHHHHHHST
T ss_pred             CCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHH--HHcCCeEEEEecCC-HHHHHHHHHHHHHHcC
Confidence            4578999999999999999999999999999999886432  22222  12356789999999 6666655531      


Q ss_pred             -CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc----CCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 -DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR----GVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~----~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                       ++|+||||||+...        ++|+.++++|+.|++++.+++...    +.++||++||.+.+...            
T Consensus       287 ~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~------------  354 (454)
T 3u0b_A          287 GKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGN------------  354 (454)
T ss_dssp             TCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCC------------
T ss_pred             CCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCC------------
Confidence             39999999997643        235567899999999999999765    55799999998754222            


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc----cccccCCCCHHHHHHHHHHHhcC
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE----DTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~----~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      .....|..+|...+.+.+       ..|+++++|+||++.|++..........    ......+.+++|+|++++.++ +
T Consensus       355 ~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~l~r~g~pedvA~~v~fL~-s  433 (454)
T 3u0b_A          355 RGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQGGQPVDVAELIAYFA-S  433 (454)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHHHSBTTSSCBCHHHHHHHHHHHH-C
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHHhhccccCCCCHHHHHHHHHHHh-C
Confidence            224678899997775543       3699999999999999875432111100    111223568999999996555 4


Q ss_pred             CC---CCCcEEEeecC
Q 022216          271 PE---SSYKVVEIISR  283 (301)
Q Consensus       271 ~~---~~~~~~~v~~~  283 (301)
                      +.   ..++++++.++
T Consensus       434 ~~a~~itG~~i~vdGG  449 (454)
T 3u0b_A          434 PASNAVTGNTIRVCGQ  449 (454)
T ss_dssp             GGGTTCCSCEEEESSS
T ss_pred             CccCCCCCcEEEECCc
Confidence            43   35667777653

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.90  E-value=2.4e-24  Score=190.54  Aligned_cols=201  Identities=15%  Similarity=0.085  Sum_probs=138.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe---------CCchhhhccccCCCCeEEEEccCCCChHhHHHH-
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR---------DLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-  131 (301)
                      +++++|++|||||+||||++++++|+++|++|++++|         +.++.++...+.........+|++| .+++.+. 
T Consensus         5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~-~~~~~~~~   83 (319)
T 1gz6_A            5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLV   83 (319)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC-HHHHHHHH
Confidence            4567899999999999999999999999999999754         4444333221100001123589998 5544433 


Q ss_pred             ------hcCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCC
Q 022216          132 ------IGDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQI  193 (301)
Q Consensus       132 ------~~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~  193 (301)
                            +++ +|+||||||+...        ++|+.++++|+.|++++++++    ++.+.++||++||...+...    
T Consensus        84 ~~~~~~~g~-iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~----  158 (319)
T 1gz6_A           84 KTALDTFGR-IDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN----  158 (319)
T ss_dssp             HHHHHHTSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----
T ss_pred             HHHHHHcCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC----
Confidence                  445 9999999997543        235567899999999999987    44566899999997542111    


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHH
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                              .....|+.+|.+.+.+.+       ..||++++|+||.+ +++.....     ......+++++|+|.+++.
T Consensus       159 --------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~-----~~~~~~~~~p~dvA~~~~~  224 (319)
T 1gz6_A          159 --------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVM-----PEDLVEALKPEYVAPLVLW  224 (319)
T ss_dssp             --------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGS-----CHHHHHHSCGGGTHHHHHH
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccC-----ChhhhccCCHHHHHHHHHH
Confidence                    124679999999886653       35899999999987 65432211     0111235789999999977


Q ss_pred             HhcCCC-CCCcEEEeec
Q 022216          267 ALLHPE-SSYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~-~~~~~~~v~~  282 (301)
                      ++..+. ..+++|++.+
T Consensus       225 l~s~~~~~tG~~~~v~G  241 (319)
T 1gz6_A          225 LCHESCEENGGLFEVGA  241 (319)
T ss_dssp             HTSTTCCCCSCEEEEET
T ss_pred             HhCchhhcCCCEEEECC
Confidence            765432 3566776644

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.88  E-value=2.2e-22  Score=187.38  Aligned_cols=195  Identities=19%  Similarity=0.162  Sum_probs=141.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchh---hhc---cccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKA---KTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~---~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++||||||+|+||+++++.|+++|++ |++++|+....   +++   +...+.++.++.+|++| .+++.+++.+   
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~i~~  303 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLGGIGD  303 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTSCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHHHHHh
Confidence            4789999999999999999999999995 88889986421   111   12245678999999999 8888887765   


Q ss_pred             --CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          135 --DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                        ++|+||||||+....        ++...+++|+.|+.++++++++.+.++||++||.+.+....            ..
T Consensus       304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~------------g~  371 (486)
T 2fr1_A          304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAP------------GL  371 (486)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCT------------TC
T ss_pred             cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCC------------CC
Confidence              369999999976432        34456789999999999999888889999999986432211            12


Q ss_pred             hHHHHHHHHHHHHH---HHcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          205 GLTLIAKLQAEQYI---RKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~---~~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ..|..+|...+.+.   +..|+++++|+||.+.++.................+++++|+++++..++..+.
T Consensus       372 ~~Yaaaka~l~~la~~~~~~gi~v~~i~pG~~~~~gm~~~~~~~~~~~~g~~~i~~e~~a~~l~~~l~~~~  442 (486)
T 2fr1_A          372 GGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQNALDRAE  442 (486)
T ss_dssp             TTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEEECCeeCCCcccchhHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            56778888887654   357999999999999876322211111111111246899999999999998765

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.88  E-value=6e-22  Score=173.49  Aligned_cols=209  Identities=17%  Similarity=0.174  Sum_probs=136.0

Q ss_pred             hcccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCC-----------chhhhccccCCC----CeEEEEcc----
Q 022216           62 VSVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDL-----------DKAKTTLSKDNP----SLQIVKAD----  120 (301)
Q Consensus        62 ~~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~-----------~~~~~~~~~~~~----~~~~~~~D----  120 (301)
                      +++++|++|||||+  ||||++++++|+++|++|++++|++           +++++.......    ....+.+|    
T Consensus         4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T 1d7o_A            4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred             cccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceecc
Confidence            45678999999999  9999999999999999999988642           222221100001    12334433    


Q ss_pred             ----CC----C--------C--h----HhHHHHhcCCCCEEEEccCCCC--C--------CCCCCceeeehHHHHHHHHH
Q 022216          121 ----VT----E--------G--S----AKLSEAIGDDSEAVVCATGFQP--G--------WDLFAPWKVDNFGTVNLVEA  168 (301)
Q Consensus       121 ----l~----~--------~--~----~~~~~~~~~~~d~Vi~~Ag~~~--~--------~~~~~~~~~N~~g~~~l~~a  168 (301)
                          ++    |        +  -    +.+.+.++. +|+||||||+..  .        ++|+.++++|+.|+++++++
T Consensus        84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~-iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~  162 (297)
T 1d7o_A           84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGS-IDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH  162 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSC-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCC-CCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence                22    1        1  1    222333456 999999998532  1        23556789999999999999


Q ss_pred             HHHc--CCCEEEEecccccccccCCCCCCcchhhcchh-hHHHHHHHHHHHHHH--------HcCCcEEEEecCcccCCC
Q 022216          169 CRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF-GLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNEP  237 (301)
Q Consensus       169 ~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~-~~y~~sK~~~e~~~~--------~~~i~~~~irpg~v~~~~  237 (301)
                      +.+.  ..++||++||...+...            ... ..|+.+|.+.+.+.+        ..||+++.|+||++.|++
T Consensus       163 ~~~~m~~~g~iv~isS~~~~~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~  230 (297)
T 1d7o_A          163 FLPIMNPGGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRA  230 (297)
T ss_dssp             HGGGEEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCC
T ss_pred             HHHHhccCceEEEEeccccccCC------------CCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccch
Confidence            9653  12699999998754221            112 468889998876542        269999999999999997


Q ss_pred             CCCceeecc------ccccccCCCCHHHHHHHHHHHhcCC--CCCCcEEEeecC
Q 022216          238 PTGNIIMET------EDTLYEGTISRDQVAEVAVEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       238 ~~~~~~~~~------~~~~~~~~v~~~Dva~~~~~~l~~~--~~~~~~~~v~~~  283 (301)
                      .........      .......+.+++|+|++++.++...  ...++++++.++
T Consensus       231 ~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG  284 (297)
T 1d7o_A          231 AKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNG  284 (297)
T ss_dssp             SSCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             hhhccccHHHHHHhhccCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            543200000      0111224679999999996665432  135667777664

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.87  E-value=2e-22  Score=192.70  Aligned_cols=202  Identities=14%  Similarity=0.070  Sum_probs=131.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe---------CCchhhhccccCCCCeEEEEccCCCChHhHHHHh
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR---------DLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      .++++|++|||||+||||++++++|+++|++|++++|         +.+..++...+.......+.+|++| .+++.+.+
T Consensus        15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d-~~~~~~~~   93 (613)
T 3oml_A           15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS-VIDGAKVI   93 (613)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCC-GGGHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC-HHHHHHHH
Confidence            5678999999999999999999999999999999987         3333333221110011123479998 66666655


Q ss_pred             cC------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCC
Q 022216          133 GD------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQIL  194 (301)
Q Consensus       133 ~~------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~  194 (301)
                      ..      ++|+||||||+...        ++|+.++++|+.|++++++++    ++.+.++||++||.+.+...     
T Consensus        94 ~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~-----  168 (613)
T 3oml_A           94 ETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGN-----  168 (613)
T ss_dssp             C----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCC-----
T ss_pred             HHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCC-----
Confidence            42      49999999997543        245667899999999999998    45556799999998643211     


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHH
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                             .....|+.+|.+.+.+.+       ..||+++.|.||.+ +++.....     .......+.++|+|.+++.+
T Consensus       169 -------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~-t~~~~~~~-----~~~~~~~~~pedvA~~v~~L  235 (613)
T 3oml_A          169 -------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA-SRMTEGIL-----PDILFNELKPKLIAPVVAYL  235 (613)
T ss_dssp             -------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC-----CHHHHTTCCGGGTHHHHHHT
T ss_pred             -------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-Chhhhhcc-----chhhhhcCCHHHHHHHHHHh
Confidence                   124678899998886553       36899999999964 44332211     11123457899999999654


Q ss_pred             hcCCC-CCCcEEEeec
Q 022216          268 LLHPE-SSYKVVEIIS  282 (301)
Q Consensus       268 l~~~~-~~~~~~~v~~  282 (301)
                      +.... ..|+++++.+
T Consensus       236 ~s~~~~~tG~~i~vdG  251 (613)
T 3oml_A          236 CHESCEDNGSYIESAA  251 (613)
T ss_dssp             TSTTCCCCSCEEEEET
T ss_pred             cCCCcCCCceEEEECC
Confidence            43321 3466777654

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.86  E-value=7.7e-22  Score=184.47  Aligned_cols=194  Identities=17%  Similarity=0.167  Sum_probs=144.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch---hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC-CC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-DS  136 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~---~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~  136 (301)
                      .+++||||||+|+||.++++.|+++|+ +|+++.|+...   .+++   +...+.++.++.+|++| .+++.+.+.+ ++
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~~~l  336 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE-RDALAALVTAYPP  336 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC-HHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHhcCCC
Confidence            478999999999999999999999999 58888998642   1211   12245678999999999 8888888753 59


Q ss_pred             CEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          137 EAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       137 d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |+||||||+....        ++...+++|+.|+.++.+++... +.++||++||.+.+-..            .....|
T Consensus       337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~------------~g~~~Y  404 (511)
T 2z5l_A          337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN------------AGQGAY  404 (511)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC------------TTBHHH
T ss_pred             cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC------------CCCHHH
Confidence            9999999976532        34456789999999999999776 67899999998642111            123678


Q ss_pred             HHHHHHHHHHHH---HcCCcEEEEecCcc-cCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          208 LIAKLQAEQYIR---KSGINYTIIRPGGL-RNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       208 ~~sK~~~e~~~~---~~~i~~~~irpg~v-~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      +.+|...+.+.+   ..|+++++|+||.+ .+.+...... ..........++++|+++++..++..+.
T Consensus       405 aaaKa~ld~la~~~~~~gi~v~sv~pG~~~~tgm~~~~~~-~~~~~~g~~~l~~e~~a~~l~~al~~~~  472 (511)
T 2z5l_A          405 AAANAALDALAERRRAAGLPATSVAWGLWGGGGMAAGAGE-ESLSRRGLRAMDPDAAVDALLGAMGRND  472 (511)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCEEEEECCBCSTTCCCCHHH-HHHHHHTBCCBCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEECCcccCCcccccccH-HHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            999999987664   57999999999988 4444332110 0001112347899999999999998664

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.86  E-value=1.9e-21  Score=185.37  Aligned_cols=217  Identities=18%  Similarity=0.126  Sum_probs=146.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhccccCCCCeEEEEccC-CCCh---HhHHHHhcCCCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLSKDNPSLQIVKADV-TEGS---AKLSEAIGDDSE  137 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~Dl-~~~~---~~~~~~~~~~~d  137 (301)
                      ++++|++|||||++|||++++++|+++|++|++.+|+. +...+.......++..+.+|+ .+..   +.+.+.++. +|
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~-iD  397 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGT-ID  397 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSC-CC
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCC-CC
Confidence            56789999999999999999999999999999987642 222222222344677788899 5521   233344566 99


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      +||||||+...        ++|+..+++|+.|++++++++    ++.+.++||++||.+.+-.   .         ....
T Consensus       398 iLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~---~---------~~~~  465 (604)
T 2et6_A          398 ILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYG---N---------FGQA  465 (604)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSC---C---------TTBH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccC---C---------CCCh
Confidence            99999997532        246678899999999999887    3445579999999864321   1         1235


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC--CCCc
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE--SSYK  276 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~  276 (301)
                      .|..+|.+...+.+       .+||+++.|.||. .+++.....  .  .. ......++|+|.+++. |.++.  ..++
T Consensus       466 ~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~~~--~--~~-~~~~~~pe~vA~~v~~-L~s~~~~itG~  538 (604)
T 2et6_A          466 NYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLSIM--R--EQ-DKNLYHADQVAPLLVY-LGTDDVPVTGE  538 (604)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC--------------CCSSCGGGTHHHHHH-TTSTTCCCCSC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccccC--c--hh-hccCCCHHHHHHHHHH-HhCCccCCCCc
Confidence            68888888775442       4799999999994 776643211  1  11 1235689999999865 44443  3566


Q ss_pred             EEEeecCC--------------CCCCcCHHHHHHHhh
Q 022216          277 VVEIISRV--------------DAPKRSYEDLFGSIK  299 (301)
Q Consensus       277 ~~~v~~~~--------------~~~~~s~~e~~~~i~  299 (301)
                      ++.+.++-              ....++..++.+.+.
T Consensus       539 ~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (604)
T 2et6_A          539 TFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLN  575 (604)
T ss_dssp             EEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHH
T ss_pred             EEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHH
Confidence            77665531              124467777776654

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.86  E-value=2.1e-22  Score=178.94  Aligned_cols=160  Identities=14%  Similarity=0.171  Sum_probs=113.9

Q ss_pred             CCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCC---------chhhh---cccc---CCCCeEEEEccCCCC-hH-
Q 022216           66 QKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDL---------DKAKT---TLSK---DNPSLQIVKADVTEG-SA-  126 (301)
Q Consensus        66 ~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~---------~~~~~---~~~~---~~~~~~~~~~Dl~~~-~~-  126 (301)
                      +|++|||||++  |||++++++|+++|++|++.+|++         ++...   ....   ....+.++.+|+++. .+ 
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~   81 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence            68999999975  999999999999999999776554         21111   1111   123478889999873 03 


Q ss_pred             -----------------hHHHH-------hcCCCCEEEEccCCCC--C--------CCCCCceeeehHHHHHHHHHHHHc
Q 022216          127 -----------------KLSEA-------IGDDSEAVVCATGFQP--G--------WDLFAPWKVDNFGTVNLVEACRKR  172 (301)
Q Consensus       127 -----------------~~~~~-------~~~~~d~Vi~~Ag~~~--~--------~~~~~~~~~N~~g~~~l~~a~~~~  172 (301)
                                       ++.++       ++. +|+||||||+..  .        ++|+.++++|+.|++++++++...
T Consensus        82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~-iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGK-INMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCC-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhcccccccccCHHHHHHHHHHHHHhcCC-CcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                             44433       344 999999999631  1        245678899999999999998543


Q ss_pred             C--CCEEEEecccccccccCCCCCCcchhhcchhh-HHHHHHHHHHHHHH-------H-cCCcEEEEecCcccCCCC
Q 022216          173 G--VNRFILISSILVNGAAMGQILNPAYIFLNVFG-LTLIAKLQAEQYIR-------K-SGINYTIIRPGGLRNEPP  238 (301)
Q Consensus       173 ~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~-~y~~sK~~~e~~~~-------~-~~i~~~~irpg~v~~~~~  238 (301)
                      -  .++||++||...+...            ..+. .|..+|.+.+.+.+       . .||+++.|.||++.|++.
T Consensus       161 m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~~~  225 (329)
T 3lt0_A          161 MKPQSSIISLTYHASQKVV------------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAA  225 (329)
T ss_dssp             EEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHH
T ss_pred             HhhCCeEEEEeCccccCCC------------CcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeechhH
Confidence            1  1699999998743211            1122 67888888775542       4 699999999999998753

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.85  E-value=1.3e-21  Score=183.70  Aligned_cols=195  Identities=13%  Similarity=0.053  Sum_probs=143.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEE-EeCCc-------------hhhhcc---ccCCCCeEEEEccCCCChH
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAG-VRDLD-------------KAKTTL---SKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~-~r~~~-------------~~~~~~---~~~~~~~~~~~~Dl~~~~~  126 (301)
                      +++++|||||+|+||.++++.|+++|++ |+++ +|+..             ..+++.   ...+.++.++.+|++| .+
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd-~~  328 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD-AE  328 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS-HH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC-HH
Confidence            5789999999999999999999999997 5555 67742             222211   1135679999999999 88


Q ss_pred             hHHHHhcC-----CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHHcC-----CCEEEEecccccccc
Q 022216          127 KLSEAIGD-----DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRG-----VNRFILISSILVNGA  188 (301)
Q Consensus       127 ~~~~~~~~-----~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~~~-----~~~iV~~SS~~~~~~  188 (301)
                      ++.+++..     ++|+||||||+....        ++..++++|+.|+.++.+++....     .++||++||++.+-.
T Consensus       329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g  408 (525)
T 3qp9_A          329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG  408 (525)
T ss_dssp             HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence            88877754     489999999976432        345578999999999999997654     689999999875422


Q ss_pred             cCCCCCCcchhhcchhhHHHHHHHHHHHHHH---HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHH
Q 022216          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIR---KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~---~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      .            .....|..+|...+.+.+   ..|+++++|.||.+.+++.................++++++++++.
T Consensus       409 ~------------~g~~~YaaaKa~l~~lA~~~~~~gi~v~sI~pG~~~tgm~~~~~~~~~~~~~g~~~l~pee~a~~l~  476 (525)
T 3qp9_A          409 G------------AGQGAYAAGTAFLDALAGQHRADGPTVTSVAWSPWEGSRVTEGATGERLRRLGLRPLAPATALTALD  476 (525)
T ss_dssp             C------------TTCHHHHHHHHHHHHHHTSCCSSCCEEEEEEECCBTTSGGGSSHHHHHHHHTTBCCBCHHHHHHHHH
T ss_pred             C------------CCCHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccccccchhhHHHHHhcCCCCCCHHHHHHHHH
Confidence            1            124678999999998764   3689999999999977664221111000111124689999999999


Q ss_pred             HHhcCCC
Q 022216          266 EALLHPE  272 (301)
Q Consensus       266 ~~l~~~~  272 (301)
                      .+|..+.
T Consensus       477 ~~l~~~~  483 (525)
T 3qp9_A          477 TALGHGD  483 (525)
T ss_dssp             HHHHHTC
T ss_pred             HHHhCCC
Confidence            9997664

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.85  E-value=9.8e-22  Score=173.59  Aligned_cols=207  Identities=17%  Similarity=0.193  Sum_probs=132.4

Q ss_pred             cccCCeEEEEcC--CchHHHHHHHHHHHCCCeEEEEEeCC-----------chhhhcccc-CCC---CeEEEEcc-----
Q 022216           63 SVKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDL-----------DKAKTTLSK-DNP---SLQIVKAD-----  120 (301)
Q Consensus        63 ~~~~~~vlVtGa--tG~iG~~~~~~l~~~G~~V~~~~r~~-----------~~~~~~~~~-~~~---~~~~~~~D-----  120 (301)
                      ++++|++|||||  +||||++++++|+++|++|++++|++           .++++.... ...   ...++.+|     
T Consensus         6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (315)
T 2o2s_A            6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK   85 (315)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred             cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence            467899999999  89999999999999999999988753           111111100 011   12444444     


Q ss_pred             -------CCC-------ChHhH-------HHHhcCCCCEEEEccCCCC--C--------CCCCCceeeehHHHHHHHHHH
Q 022216          121 -------VTE-------GSAKL-------SEAIGDDSEAVVCATGFQP--G--------WDLFAPWKVDNFGTVNLVEAC  169 (301)
Q Consensus       121 -------l~~-------~~~~~-------~~~~~~~~d~Vi~~Ag~~~--~--------~~~~~~~~~N~~g~~~l~~a~  169 (301)
                             ++|       ..+++       .+.+++ +|+||||||+..  .        ++|+..+++|+.|++++++++
T Consensus        86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~-iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~  164 (315)
T 2o2s_A           86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGN-IDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHF  164 (315)
T ss_dssp             TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCS-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCC-CCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence                   332       01122       233456 999999999642  1        235567899999999999999


Q ss_pred             HHc--CCCEEEEecccccccccCCCCCCcchhhcchh-hHHHHHHHHHHHHHH--------HcCCcEEEEecCcccCCCC
Q 022216          170 RKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF-GLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNEPP  238 (301)
Q Consensus       170 ~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~-~~y~~sK~~~e~~~~--------~~~i~~~~irpg~v~~~~~  238 (301)
                      ...  ..++||++||...+....            .+ ..|+.+|.+.+.+.+        .+||+++.|+||++.|++.
T Consensus       165 ~~~m~~~g~Iv~isS~~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~  232 (315)
T 2o2s_A          165 GPIMNEGGSAVTLSYLAAERVVP------------GYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAA  232 (315)
T ss_dssp             STTEEEEEEEEEEEEGGGTSCCT------------TCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHH
T ss_pred             HHHHhcCCEEEEEecccccccCC------------CccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhh
Confidence            543  126999999987542211            12 368888888875542        2699999999999998752


Q ss_pred             CCcee-----e-c------cccccccCCCCHHHHHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          239 TGNII-----M-E------TEDTLYEGTISRDQVAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       239 ~~~~~-----~-~------~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      .....     . .      ........+.+++|+|++++.++. +.   ..|+++.+.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s-~~~~~itG~~i~vdGG  291 (315)
T 2o2s_A          233 SAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLS-PLARAVSGVTLYVDNG  291 (315)
T ss_dssp             HHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTS-GGGTTCCSCEEEESTT
T ss_pred             hhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-chhccCcCCEEEECCC
Confidence            21100     0 0      000122345799999999966554 43   34566666553

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.85  E-value=2.3e-21  Score=171.45  Aligned_cols=208  Identities=16%  Similarity=0.158  Sum_probs=117.0

Q ss_pred             cccCCeEEEEcC--CchHHHHHHHHHHHCCCeEEEEEeCC-----------chhhhc-----------ccc---CC---C
Q 022216           63 SVKQKKIFVAGA--TGSSGKRIVEQLLAKGFAVKAGVRDL-----------DKAKTT-----------LSK---DN---P  112 (301)
Q Consensus        63 ~~~~~~vlVtGa--tG~iG~~~~~~l~~~G~~V~~~~r~~-----------~~~~~~-----------~~~---~~---~  112 (301)
                      ++++|++|||||  ++|||++++++|+++|++|++++|++           +++++.           ..+   ..   .
T Consensus         6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (319)
T 2ptg_A            6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV   85 (319)
T ss_dssp             CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------C
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence            467899999999  89999999999999999999988642           111110           000   00   0


Q ss_pred             CeEEEEccC------------CC----------Ch----HhHHHHhcCCCCEEEEccCCCC--C--------CCCCCcee
Q 022216          113 SLQIVKADV------------TE----------GS----AKLSEAIGDDSEAVVCATGFQP--G--------WDLFAPWK  156 (301)
Q Consensus       113 ~~~~~~~Dl------------~~----------~~----~~~~~~~~~~~d~Vi~~Ag~~~--~--------~~~~~~~~  156 (301)
                      ...++.+|+            +|          .-    +.+.+.++. +|+||||||+..  .        ++|+..++
T Consensus        86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~-iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~  164 (319)
T 2ptg_A           86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQ-IDILVHSLANGPEVTKPLLQTSRKGYLAAVS  164 (319)
T ss_dssp             CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSC-EEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred             ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCC-CCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence            124444442            22          01    222233456 999999998542  1        23556789


Q ss_pred             eehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchh-hHHHHHHHHHHHHHH--------HcCCcE
Q 022216          157 VDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVF-GLTLIAKLQAEQYIR--------KSGINY  225 (301)
Q Consensus       157 ~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~-~~y~~sK~~~e~~~~--------~~~i~~  225 (301)
                      +|+.|++++++++...  ..++||++||...+...            ..+ ..|+.+|.+.+.+.+        .+||++
T Consensus       165 vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrv  232 (319)
T 2ptg_A          165 SSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVI------------PGYGGGMSSAKAALESDCRTLAFEAGRARAVRV  232 (319)
T ss_dssp             HHTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------THHHHHHHHHHHHHHHCCEE
T ss_pred             HhhHHHHHHHHHHHHHHhcCceEEEEecccccccc------------CccchhhHHHHHHHHHHHHHHHHHhccccCeeE
Confidence            9999999999999654  12699999998643211            112 357777777665432        269999


Q ss_pred             EEEecCcccCCCCCCcee-----e-c------cccccccCCCCHHHHHHHHHHHhcCC--CCCCcEEEeecC
Q 022216          226 TIIRPGGLRNEPPTGNII-----M-E------TEDTLYEGTISRDQVAEVAVEALLHP--ESSYKVVEIISR  283 (301)
Q Consensus       226 ~~irpg~v~~~~~~~~~~-----~-~------~~~~~~~~~v~~~Dva~~~~~~l~~~--~~~~~~~~v~~~  283 (301)
                      +.|+||++.|++......     . .      ........+.+++|+|++++.++...  ...++++.+.++
T Consensus       233 n~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG  304 (319)
T 2ptg_A          233 NCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDNG  304 (319)
T ss_dssp             EEEEECCCC-------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             EEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence            999999999986432110     0 0      00111224678999999996655432  234566666553

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.84  E-value=4.4e-21  Score=178.27  Aligned_cols=194  Identities=15%  Similarity=0.105  Sum_probs=142.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch---hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~---~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ++++|||||+|+||+++++.|+++|+ +|+++.|+...   .+++   +...+.++.++.+|++| .+++.+.+..    
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~i~~~  317 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD-REALAALLAELPED  317 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTCCTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHh
Confidence            48999999999999999999999998 78887886432   2221   22245789999999999 8888887754    


Q ss_pred             -CCCEEEEccCCC-CCC--------CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          135 -DSEAVVCATGFQ-PGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       135 -~~d~Vi~~Ag~~-~~~--------~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                       ++|+||||||+. ...        ++...+++|+.|++++.+++.+.+.++||++||++.+-..            ...
T Consensus       318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~------------~g~  385 (496)
T 3mje_A          318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGS------------GGQ  385 (496)
T ss_dssp             SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTC------------TTC
T ss_pred             CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCC------------CCc
Confidence             489999999976 321        2445789999999999999998888899999998743221            124


Q ss_pred             hHHHHHHHHHHHHHH---HcCCcEEEEecCcccCCCCCCceeec-cccccccCCCCHHHHHHHHHHHhcCCC
Q 022216          205 GLTLIAKLQAEQYIR---KSGINYTIIRPGGLRNEPPTGNIIME-TEDTLYEGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~---~~~i~~~~irpg~v~~~~~~~~~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ..|..+|...+.+.+   ..|+++++|.||.+.+.......... .........+++++.++++..++..+.
T Consensus       386 ~~YaAaKa~ldala~~~~~~Gi~v~sV~pG~w~~~gm~~~~~~~~~l~~~g~~~l~pe~~~~~l~~~l~~~~  457 (496)
T 3mje_A          386 PGYAAANAYLDALAEHRRSLGLTASSVAWGTWGEVGMATDPEVHDRLVRQGVLAMEPEHALGALDQMLENDD  457 (496)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCEEEEECEESSSCC------CHHHHHTTEEEECHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEEECCcccCCccccChHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCC
Confidence            678899998886654   57999999999988765433221100 000111124789999999988887664

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.84  E-value=4.3e-21  Score=182.97  Aligned_cols=198  Identities=17%  Similarity=0.101  Sum_probs=131.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC---------chhhhccc---cCCCCeEEEEccCCCCh-----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL---------DKAKTTLS---KDNPSLQIVKADVTEGS-----  125 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~---------~~~~~~~~---~~~~~~~~~~~Dl~~~~-----  125 (301)
                      ++++|++|||||++|||++++++|+++|++|++.+|+.         +.+++...   ......   .+|++|..     
T Consensus         5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~---~~d~~d~~~~~~~   81 (604)
T 2et6_A            5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA---VADYNNVLDGDKI   81 (604)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEE---EEECCCTTCHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeE---EEEcCCHHHHHHH
Confidence            46789999999999999999999999999999987754         33332221   112222   35776621     


Q ss_pred             -HhHHHHhcCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCC
Q 022216          126 -AKLSEAIGDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       126 -~~~~~~~~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~  192 (301)
                       +.+.+.++. +|+||||||+...        ++|+..+++|+.|++++++++    ++.+.++||++||.+..-..   
T Consensus        82 v~~~~~~~G~-iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~---  157 (604)
T 2et6_A           82 VETAVKNFGT-VHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGN---  157 (604)
T ss_dssp             HHHHHHHHSC-CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC---
T ss_pred             HHHHHHHcCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCC---
Confidence             233344566 9999999997532        246678899999999999887    34455799999998643111   


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHH
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                               .....|..+|.+...+.+       .+||+++.|.|| +.+++.....     .........++|+|.+++
T Consensus       158 ---------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m~~~~~-----~~~~~~~~~pe~vA~~v~  222 (604)
T 2et6_A          158 ---------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTESIM-----PPPMLEKLGPEKVAPLVL  222 (604)
T ss_dssp             ---------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHHHHTTS-----CHHHHTTCSHHHHHHHHH
T ss_pred             ---------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCccccccC-----ChhhhccCCHHHHHHHHH
Confidence                     123568888888875543       479999999997 4554321110     011123468999999996


Q ss_pred             HHhcCCC-CCCcEEEeec
Q 022216          266 EALLHPE-SSYKVVEIIS  282 (301)
Q Consensus       266 ~~l~~~~-~~~~~~~v~~  282 (301)
                      .++.... ..++++.+.+
T Consensus       223 ~L~s~~~~itG~~~~vdg  240 (604)
T 2et6_A          223 YLSSAENELTGQFFEVAA  240 (604)
T ss_dssp             HHTSSSCCCCSCEEEEET
T ss_pred             HHhCCcccCCCCEEEECC
Confidence            5554321 2456666554

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.83  E-value=6.5e-21  Score=171.81  Aligned_cols=191  Identities=13%  Similarity=0.037  Sum_probs=131.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHH-CCCeEEEEEeCCchhhh---------------ccccCCCCeEEEEccCCCChHhH
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKT---------------TLSKDNPSLQIVKADVTEGSAKL  128 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~~r~~~~~~~---------------~~~~~~~~~~~~~~Dl~~~~~~~  128 (301)
                      .+|++|||||++|||++++++|++ .|++|++++|+.+..++               .....+..+..+.+|++| .+++
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd-~~~v  138 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFS-DAAR  138 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS-HHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCC-HHHH
Confidence            489999999999999999999999 99999999988654332               122245678899999999 5443


Q ss_pred             -------HHHh-cCCCCEEEEccCCC-------------CC-----------------------------CCCCCceeee
Q 022216          129 -------SEAI-GDDSEAVVCATGFQ-------------PG-----------------------------WDLFAPWKVD  158 (301)
Q Consensus       129 -------~~~~-~~~~d~Vi~~Ag~~-------------~~-----------------------------~~~~~~~~~N  158 (301)
                             .+.+ +. +|+||||||..             ..                             ++|+..+++|
T Consensus       139 ~~~v~~i~~~~~G~-IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn  217 (422)
T 3s8m_A          139 AQVIELIKTEMGGQ-VDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVM  217 (422)
T ss_dssp             HHHHHHHHHHSCSC-EEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCC-CCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhh
Confidence                   3445 56 99999999862             00                             1122345566


Q ss_pred             hHHHH-HHHHHHHHcC----CCEEEEecccccccccCCCCCCcchhhcchh--hHHHHHHHHHHHHHH-------HcCCc
Q 022216          159 NFGTV-NLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLNVF--GLTLIAKLQAEQYIR-------KSGIN  224 (301)
Q Consensus       159 ~~g~~-~l~~a~~~~~----~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~--~~y~~sK~~~e~~~~-------~~~i~  224 (301)
                      ..+.+ .+++++....    .++||++||+...-            ....+  ..|+.+|.+.+.+.+       ..||+
T Consensus       218 ~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~------------~~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIR  285 (422)
T 3s8m_A          218 GGQDWELWIDALEGAGVLADGARSVAFSYIGTEI------------TWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGG  285 (422)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGG------------GHHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             chhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhc------------cCCCccchHHHHHHHHHHHHHHHHHHHhCccCEE
Confidence            66665 6777764432    26899999985221            11224  788999999886553       36999


Q ss_pred             EEEEecCcccCCCCCCceeecc----ccccccCCCCHHHHHHHHHHHhc
Q 022216          225 YTIIRPGGLRNEPPTGNIIMET----EDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       225 ~~~irpg~v~~~~~~~~~~~~~----~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      +++|.||.+.|++.........    ........-.++|||+.+..++.
T Consensus       286 VNaVaPG~i~T~~~~~ip~~~~~~~~~~~~m~r~G~pEdva~~v~~L~s  334 (422)
T 3s8m_A          286 ANVAVLKSVVTQASAAIPVMPLYISMVYKIMKEKGLHEGTIEQLDRLFR  334 (422)
T ss_dssp             EEEEEECCCCCTTGGGSTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             EEEEEcCCCcChhhhcCCCChHHHHHHHhhhcCCcChHHHHHHHHHHhc
Confidence            9999999999987543211110    00112234578999999965543

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.81  E-value=7.6e-21  Score=169.89  Aligned_cols=191  Identities=10%  Similarity=0.013  Sum_probs=130.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHH-CCCeEEEEEeCCchhhh---------------ccccCCCCeEEEEccCCCChHhH
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKT---------------TLSKDNPSLQIVKADVTEGSAKL  128 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~~r~~~~~~~---------------~~~~~~~~~~~~~~Dl~~~~~~~  128 (301)
                      .+|++|||||+++||+++++.|++ +|++|++++|+.+..++               .....+..+..+.+|++| .+++
T Consensus        46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd-~~~v  124 (405)
T 3zu3_A           46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFS-DEIK  124 (405)
T ss_dssp             CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS-HHHH
T ss_pred             CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCC-HHHH
Confidence            589999999999999999999999 99999999887654321               112245678899999999 6555


Q ss_pred             HHH-------hcCCCCEEEEccCCCC------------------------------------------CCCCCCceeeeh
Q 022216          129 SEA-------IGDDSEAVVCATGFQP------------------------------------------GWDLFAPWKVDN  159 (301)
Q Consensus       129 ~~~-------~~~~~d~Vi~~Ag~~~------------------------------------------~~~~~~~~~~N~  159 (301)
                      .++       ++. +|+||||||...                                          .++|+.++++|.
T Consensus       125 ~~~v~~i~~~~G~-IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~  203 (405)
T 3zu3_A          125 QLTIDAIKQDLGQ-VDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG  203 (405)
T ss_dssp             HHHHHHHHHHTSC-EEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCC-CCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence            444       445 999999998630                                          012445567888


Q ss_pred             HHHH-HHHHHHHHcC----CCEEEEecccccccccCCCCCCcchhhcchh--hHHHHHHHHHHHHHH-------Hc-CCc
Q 022216          160 FGTV-NLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLNVF--GLTLIAKLQAEQYIR-------KS-GIN  224 (301)
Q Consensus       160 ~g~~-~l~~a~~~~~----~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~--~~y~~sK~~~e~~~~-------~~-~i~  224 (301)
                      .+.+ .+++++....    .++||++||+....   +         ...+  +.|+.+|.+.+.+.+       .. ||+
T Consensus       204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~---~---------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIR  271 (405)
T 3zu3_A          204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKI---T---------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGD  271 (405)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGG---G---------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCE
T ss_pred             hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhC---c---------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCeE
Confidence            8877 6777664321    26899999986321   1         1123  678888888876543       36 999


Q ss_pred             EEEEecCcccCCCCCCceeecc----ccccccCCCCHHHHHHHHHHHhc
Q 022216          225 YTIIRPGGLRNEPPTGNIIMET----EDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       225 ~~~irpg~v~~~~~~~~~~~~~----~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      +++|.||.+.|++.......+.    .......+-.++|+++.+..++.
T Consensus       272 VNaVaPG~i~T~~s~~ip~~p~y~~~l~~~mkr~G~~Ed~a~~i~~L~s  320 (405)
T 3zu3_A          272 ARVSVLKAVVSQASSAIPMMPLYLSLLFKVMKEKGTHEGCIEQVYSLYK  320 (405)
T ss_dssp             EEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             EEEEEeCCCcCchhhcCCCCcHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            9999999999985332211100    00112234467999999965553

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=4.7e-20  Score=184.55  Aligned_cols=220  Identities=16%  Similarity=0.096  Sum_probs=145.0

Q ss_pred             hcccCCeEEEEcCCch-HHHHHHHHHHHCCCeEEEE-EeCCchhhhcc----cc---CCCCeEEEEccCCCChHhHHHHh
Q 022216           62 VSVKQKKIFVAGATGS-SGKRIVEQLLAKGFAVKAG-VRDLDKAKTTL----SK---DNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~-iG~~~~~~l~~~G~~V~~~-~r~~~~~~~~~----~~---~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      +++++|++|||||+|+ ||++++++|+++|++|+++ .|+.+..++..    ..   .+.++.++.+|++| .+++.+++
T Consensus       472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD-~esVeaLV  550 (1688)
T 2pff_A          472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGS-KQDVEALI  550 (1688)
T ss_dssp             CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSS-TTHHHHHH
T ss_pred             cccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCC-HHHHHHHH
Confidence            3567899999999998 9999999999999999988 46555443321    11   13568899999999 66665544


Q ss_pred             ------------c-CCCCEEEEccCCCCCC-----------CCCCceeeehHHHHHHHHHHHHc------CCCEEEEecc
Q 022216          133 ------------G-DDSEAVVCATGFQPGW-----------DLFAPWKVDNFGTVNLVEACRKR------GVNRFILISS  182 (301)
Q Consensus       133 ------------~-~~~d~Vi~~Ag~~~~~-----------~~~~~~~~N~~g~~~l~~a~~~~------~~~~iV~~SS  182 (301)
                                  + . +|+||||||+....           +|...+++|+.++++++++++..      +.++||++||
T Consensus       551 e~I~e~~~~~GfG~~-IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISS  629 (1688)
T 2pff_A          551 EFIYDTEKNGGLGWD-LDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSP  629 (1688)
T ss_dssp             HHHHSCTTSSSCCCC-CCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCS
T ss_pred             HHHHHhccccccCCC-CeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEC
Confidence                        2 4 99999999965322           23456899999999999988321      2258999999


Q ss_pred             cccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH-H----H--cCCcEEEEecCccc-CCCCCC-ceeeccccccccC
Q 022216          183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI-R----K--SGINYTIIRPGGLR-NEPPTG-NIIMETEDTLYEG  253 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-~----~--~~i~~~~irpg~v~-~~~~~~-~~~~~~~~~~~~~  253 (301)
                      ...+..              ....|+.+|.+.+.++ +    +  ..|+++.|.||++. +++... .............
T Consensus       630 iAG~~G--------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~e~~~~~l~~iplR  695 (1688)
T 2pff_A          630 NHGTFG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVR  695 (1688)
T ss_dssp             CTTTSS--------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTTTTCSTTTSSSSCC
T ss_pred             hHhccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCchHHHHHHHhCCCC
Confidence            863311              1357899999999873 2    1  23899999999999 454332 1100111111113


Q ss_pred             CCCHHHHHHHHHHHhcCCCC---CCcEEEee-cCCCCCCcCHHHHHHH
Q 022216          254 TISRDQVAEVAVEALLHPES---SYKVVEII-SRVDAPKRSYEDLFGS  297 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~~~~---~~~~~~v~-~~~~~~~~s~~e~~~~  297 (301)
                      +.+++|+|++++.++.....   .++.+.+. +++......+.++...
T Consensus       696 ~~sPEEVA~aIlFLaSd~sAs~ITGq~I~VDVDGG~~~~~dl~ella~  743 (1688)
T 2pff_A          696 TFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAK  743 (1688)
T ss_dssp             CCCCCTTHHHHHHHTSTTHHHHHTTSCCCCCCSCSGGGSSSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCccccccCcEEEEEcCCCeeecCCHHHHHHH
Confidence            56899999999665543311   35555442 2211233355555443

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.78  E-value=2.3e-19  Score=184.81  Aligned_cols=220  Identities=16%  Similarity=0.098  Sum_probs=145.6

Q ss_pred             hcccCCeEEEEcCCch-HHHHHHHHHHHCCCeEEEEE-eCCchhhhccc-------cCCCCeEEEEccCCCChHhHHHHh
Q 022216           62 VSVKQKKIFVAGATGS-SGKRIVEQLLAKGFAVKAGV-RDLDKAKTTLS-------KDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~-iG~~~~~~l~~~G~~V~~~~-r~~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      +++++|++|||||++| ||+++++.|+++|++|++++ |+.+..++...       ....++.++.+|++| .+++.+++
T Consensus       671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd-~~sV~alv  749 (1887)
T 2uv8_A          671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGS-KQDVEALI  749 (1887)
T ss_dssp             BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTC-HHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC-HHHHHHHH
Confidence            4578999999999998 99999999999999999984 65554432211       124578899999999 76666554


Q ss_pred             c-------------CCCCEEEEccCCCCCC-----------CCCCceeeehHHHHHHHHHHHHcC------CCEEEEecc
Q 022216          133 G-------------DDSEAVVCATGFQPGW-----------DLFAPWKVDNFGTVNLVEACRKRG------VNRFILISS  182 (301)
Q Consensus       133 ~-------------~~~d~Vi~~Ag~~~~~-----------~~~~~~~~N~~g~~~l~~a~~~~~------~~~iV~~SS  182 (301)
                      .             . +|+||||||+....           +|+.++++|+.++++++++++...      .++||++||
T Consensus       750 ~~i~~~~~~~G~G~~-LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS  828 (1887)
T 2uv8_A          750 EFIYDTEKNGGLGWD-LDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSP  828 (1887)
T ss_dssp             HHHHSCTTTTSCCCC-CSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECS
T ss_pred             HHHHHhccccccCCC-CeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcC
Confidence            2             4 99999999975322           245678999999999999884322      259999999


Q ss_pred             cccccccCCCCCCcchhhcchhhHHHHHHHHHHHH-HH----Hc--CCcEEEEecCccc-CCCCCCc-eeeccccccccC
Q 022216          183 ILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY-IR----KS--GINYTIIRPGGLR-NEPPTGN-IIMETEDTLYEG  253 (301)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~-~~----~~--~i~~~~irpg~v~-~~~~~~~-~~~~~~~~~~~~  253 (301)
                      ...+..              ....|+.+|.+.+.+ .+    +.  .|+++.|.||++. +++.... ............
T Consensus       829 ~ag~~g--------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~~~~~~plr  894 (1887)
T 2uv8_A          829 NHGTFG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVR  894 (1887)
T ss_dssp             CTTCSS--------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHHHHHTTSCC
T ss_pred             hHhccC--------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHHHHHhcCCC
Confidence            864321              135788999988876 21    11  2999999999999 5653321 000000111113


Q ss_pred             CCCHHHHHHHHHHHhcCCC----CCCcEEEee-cCCCCCCcCHHHHHHHh
Q 022216          254 TISRDQVAEVAVEALLHPE----SSYKVVEII-SRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~~~----~~~~~~~v~-~~~~~~~~s~~e~~~~i  298 (301)
                      +.+++|+|++++.++ ++.    ..++.+.+. +++......+.++...+
T Consensus       895 ~~sPEEVA~avlfLa-Sd~~as~iTGq~I~VDVDGG~~~~~~l~el~~~l  943 (1887)
T 2uv8_A          895 TFSQKEMAFNLLGLL-TPEVVELCQKSPVMADLNGGLQFVPELKEFTAKL  943 (1887)
T ss_dssp             CEEHHHHHHHHHGGG-SHHHHHHHHHSCEEEEESCSTTTSSSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh-CCCccccccCcEEEEECCCCeeccccHHHHHHHH
Confidence            558999999996544 443    134566663 22222444666665443

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.75  E-value=1e-18  Score=179.61  Aligned_cols=222  Identities=14%  Similarity=0.077  Sum_probs=146.8

Q ss_pred             hcccCCeEEEEcCCch-HHHHHHHHHHHCCCeEEEEE-eCCchhhh----c---cccCCCCeEEEEccCCCChHhHHHHh
Q 022216           62 VSVKQKKIFVAGATGS-SGKRIVEQLLAKGFAVKAGV-RDLDKAKT----T---LSKDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~-iG~~~~~~l~~~G~~V~~~~-r~~~~~~~----~---~~~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      +++++|++|||||+|+ ||+++++.|+++|++|++++ |+.+...+    +   ....+.++.++.+|++| .+++.+++
T Consensus       648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd-~esV~alv  726 (1878)
T 2uv9_A          648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGS-KQDVEALV  726 (1878)
T ss_dssp             BCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTC-HHHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCC-HHHHHHHH
Confidence            4578999999999999 99999999999999999886 44444322    1   11124578899999999 77666654


Q ss_pred             c---------C-CCCEEEEccCCCCCC-----------CCCCceeeehHHHHHHHHHHHH------cCCCEEEEeccccc
Q 022216          133 G---------D-DSEAVVCATGFQPGW-----------DLFAPWKVDNFGTVNLVEACRK------RGVNRFILISSILV  185 (301)
Q Consensus       133 ~---------~-~~d~Vi~~Ag~~~~~-----------~~~~~~~~N~~g~~~l~~a~~~------~~~~~iV~~SS~~~  185 (301)
                      .         + ++|+||||||+....           +|..++++|+.|+++++++++.      .+.++||++||...
T Consensus       727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag  806 (1878)
T 2uv9_A          727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHG  806 (1878)
T ss_dssp             HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSS
T ss_pred             HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhh
Confidence            2         1 399999999975322           2345679999999999887421      12368999999863


Q ss_pred             ccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH----H---cCCcEEEEecCccc-CCCCCCc-eeeccccccccCCCC
Q 022216          186 NGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----K---SGINYTIIRPGGLR-NEPPTGN-IIMETEDTLYEGTIS  256 (301)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~---~~i~~~~irpg~v~-~~~~~~~-~~~~~~~~~~~~~v~  256 (301)
                      +..              ....|+.+|.+.+.+.+    +   .+|+++.|.||++. |++.... ............+.+
T Consensus       807 ~~g--------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~~~~~~~~~~~~plr~~s  872 (1878)
T 2uv9_A          807 TFG--------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSANNLVAEGVEKLGVRTFS  872 (1878)
T ss_dssp             SSS--------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSHHHHTHHHHHTTTCCCBC
T ss_pred             ccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCcccccchhhHHHHHhcCCCCCC
Confidence            311              13568899998886642    1   23999999999998 7764431 000000111113568


Q ss_pred             HHHHHHHHHHHhcCCC---CCCcEEEee-cCCCCCCcCHHHHHHHh
Q 022216          257 RDQVAEVAVEALLHPE---SSYKVVEII-SRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~---~~~~~~~v~-~~~~~~~~s~~e~~~~i  298 (301)
                      ++|+|++++.++....   ..++.+.+. +++......+.++...+
T Consensus       873 PeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~~~~~l~el~~~l  918 (1878)
T 2uv9_A          873 QQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQFIPDLKGLMTKL  918 (1878)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGGGCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcccccccCcEEEEEcCCCccccCCHHHHHHHH
Confidence            9999999865553321   235666663 22222335566665443

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.75  E-value=2.9e-18  Score=168.10  Aligned_cols=194  Identities=17%  Similarity=0.128  Sum_probs=141.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHH-HCCC-eEEEEEeCCc---hhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLL-AKGF-AVKAGVRDLD---KAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~-~~G~-~V~~~~r~~~---~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      .++++|||||+|+||+++++.|+ ++|+ +|+++.|+..   ..++..   ...+.++.++.+|++| .+++.+++..  
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd-~~~v~~~~~~~~  607 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVAD-RETLAKVLASIP  607 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTSC
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHH
Confidence            47899999999999999999999 7898 5888899843   222222   1245789999999999 8888887754  


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                         ++|+||||||+..+        ++|+..+++|+.|++++.+++.. .. +||++||++.+-..            ..
T Consensus       608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l-~iV~~SS~ag~~g~------------~g  673 (795)
T 3slk_A          608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DV-ALVLFSSVSGVLGS------------GG  673 (795)
T ss_dssp             TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TS-EEEEEEETHHHHTC------------SS
T ss_pred             HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CC-EEEEEccHHhcCCC------------CC
Confidence               58999999998653        34567789999999999999833 34 89999998744221            12


Q ss_pred             hhHHHHHHHHHHHHH---HHcCCcEEEEecCcccCCCCCCceee---ccccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          204 FGLTLIAKLQAEQYI---RKSGINYTIIRPGGLRNEPPTGNIIM---ETEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~---~~~~i~~~~irpg~v~~~~~~~~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      ...|..+|...+.+.   +..|++++.|.||.+.+++.......   ..........+..+++.+.+..++..+..
T Consensus       674 ~~~YaAaka~~~alA~~~~~~Gi~v~sI~pG~v~t~g~~~~~~~~~~~~~~~~g~~~l~~~e~~~~~~~~l~~~~~  749 (795)
T 3slk_A          674 QGNYAAANSFLDALAQQRQSRGLPTRSLAWGPWAEHGMASTLREAEQDRLARSGLLPISTEEGLSQFDAACGGAHT  749 (795)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSCCCHHHHHHHHHHHHHHHTTBCCCCHHHHHHHHHHHHTSSCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCeEEEEECCeECcchhhccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCc
Confidence            366778887666544   35799999999999987643221100   00011112467889999988888877653

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.75  E-value=3.1e-18  Score=155.40  Aligned_cols=195  Identities=12%  Similarity=-0.022  Sum_probs=128.9

Q ss_pred             ccCCeEEEEcCCchHHHH--HHHHHHHCCCeEEEEEeCCchhh---------------hccccCCCCeEEEEccCCCChH
Q 022216           64 VKQKKIFVAGATGSSGKR--IVEQLLAKGFAVKAGVRDLDKAK---------------TTLSKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~--~~~~l~~~G~~V~~~~r~~~~~~---------------~~~~~~~~~~~~~~~Dl~~~~~  126 (301)
                      ..+|++|||||+++||++  ++++|+++|++|++++|+.....               +.....+..+..+.+|++| .+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd-~~  136 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFS-NE  136 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTC-HH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCC-HH
Confidence            468999999999999999  99999999999999998754321               1222245678899999999 65


Q ss_pred             hHHHHhcC------CCCEEEEccCCCC-------------C-----------------------------CCCCCceeee
Q 022216          127 KLSEAIGD------DSEAVVCATGFQP-------------G-----------------------------WDLFAPWKVD  158 (301)
Q Consensus       127 ~~~~~~~~------~~d~Vi~~Ag~~~-------------~-----------------------------~~~~~~~~~N  158 (301)
                      ++.+.+..      ++|+||||||...             .                             ++|...+++|
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn  216 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM  216 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence            55554421      4999999998630             0                             1122334555


Q ss_pred             hHHHH-HHHHHHHHcC----CCEEEEecccccccccCCCCCCcchhhcchh--hHHHHHHHHHHHHH-------HH-cCC
Q 022216          159 NFGTV-NLVEACRKRG----VNRFILISSILVNGAAMGQILNPAYIFLNVF--GLTLIAKLQAEQYI-------RK-SGI  223 (301)
Q Consensus       159 ~~g~~-~l~~a~~~~~----~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~--~~y~~sK~~~e~~~-------~~-~~i  223 (301)
                      ..+.+ .+++++....    .+++|++||+...   .+         ...+  +.|+.+|.+.+.+.       .. .|+
T Consensus       217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~---~~---------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GI  284 (418)
T 4eue_A          217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSP---RT---------YKIYREGTIGIAKKDLEDKAKLINEKLNRVIGG  284 (418)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCG---GG---------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhc---CC---------CCccccHHHHHHHHHHHHHHHHHHHHhCCccCe
Confidence            55555 5666665432    2589999998522   11         1224  67888888887654       35 799


Q ss_pred             cEEEEecCcccCCCCCCceeecc----ccccccCCCCHHHHHHHHHHHhcCC
Q 022216          224 NYTIIRPGGLRNEPPTGNIIMET----EDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       224 ~~~~irpg~v~~~~~~~~~~~~~----~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ++++|.||.+.|++.......+.    ........-.++|+++.+..++.+.
T Consensus       285 rVN~V~PG~v~T~~s~~ip~~p~y~~~~~~~mk~~G~~E~v~e~~~~L~sd~  336 (418)
T 4eue_A          285 RAFVSVNKALVTKASAYIPTFPLYAAILYKVMKEKNIHENCIMQIERMFSEK  336 (418)
T ss_dssp             EEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred             EEEEEECCcCcChhhhcCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHhhcc
Confidence            99999999999975332211000    0011122346789999987666543

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.67  E-value=3.5e-18  Score=151.54  Aligned_cols=167  Identities=13%  Similarity=0.116  Sum_probs=115.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCCc--hhhhcccc-CCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLD--KAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~~--~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      .|+|+||||+||||++++..|++.|+       +|+++++...  +......+ .+..+.++ .|+++ .+.+.+++++ 
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~-~~~~~~a~~~-   80 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEA-TDDPKVAFKD-   80 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEE-ESCHHHHTTT-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEe-ccChHHHhCC-
Confidence            46899999999999999999999996       8998887641  11110000 11112233 57776 5667888999 


Q ss_pred             CCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcC-CC-EEEEeccccc-ccccCCCCCCcchh-hcchhhHHHH
Q 022216          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG-VN-RFILISSILV-NGAAMGQILNPAYI-FLNVFGLTLI  209 (301)
Q Consensus       136 ~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~-~~-~iV~~SS~~~-~~~~~~~~~~~~~~-~~~~~~~y~~  209 (301)
                      +|+|||+||...  ..+....+++|+.++.++++++++.+ .+ +++++|+..- ....     ..... ...+...|+.
T Consensus        81 ~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~-----~~~~~~~~~p~~~yg~  155 (327)
T 1y7t_A           81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALI-----AYKNAPGLNPRNFTAM  155 (327)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH-----HHHTCTTSCGGGEEEC
T ss_pred             CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHH-----HHHHcCCCChhheecc
Confidence            999999999654  23345578999999999999999885 54 7888887531 0000     00011 1223345778


Q ss_pred             HHHHHHHHH----HHcCCcEEEEecCcccCCCCCC
Q 022216          210 AKLQAEQYI----RKSGINYTIIRPGGLRNEPPTG  240 (301)
Q Consensus       210 sK~~~e~~~----~~~~i~~~~irpg~v~~~~~~~  240 (301)
                      +|+..|++.    +..|++++++||++++|+....
T Consensus       156 tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~  190 (327)
T 1y7t_A          156 TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSST  190 (327)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTT
T ss_pred             chHHHHHHHHHHHHHhCcChhheeeeEEEcCCCCe
Confidence            999888755    3469999999999999986543

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.62  E-value=3.2e-15  Score=161.11  Aligned_cols=220  Identities=18%  Similarity=0.142  Sum_probs=138.6

Q ss_pred             cccCCeEEEEcCCch-HHHHHHHHHHHCCCeEEEEEeCCch-----hhhccc---cCCCCeEEEEccCCCChHhHHHHh-
Q 022216           63 SVKQKKIFVAGATGS-SGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLS---KDNPSLQIVKADVTEGSAKLSEAI-  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~-iG~~~~~~l~~~G~~V~~~~r~~~~-----~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-  132 (301)
                      .+++|++|||||++| ||+++++.|+++|++|++.+|+.+.     ++++..   ..+..+..+.+|++| .+++.+++ 
T Consensus      2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd-~~~v~~lv~ 2211 (3089)
T 3zen_D         2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMAS-YSDIDKLVE 2211 (3089)
T ss_dssp             CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCC-HHHHHHHHH
Confidence            378999999999999 9999999999999999999998776     333322   134567889999999 76665542 


Q ss_pred             ---c----C--CCCEEEEccCCC-------------CCCCCCCc----eeeehHHHHHHHHHHHH----cCCC---EEEE
Q 022216          133 ---G----D--DSEAVVCATGFQ-------------PGWDLFAP----WKVDNFGTVNLVEACRK----RGVN---RFIL  179 (301)
Q Consensus       133 ---~----~--~~d~Vi~~Ag~~-------------~~~~~~~~----~~~N~~g~~~l~~a~~~----~~~~---~iV~  179 (301)
                         .    .  ++|++|||||+.             ..++|...    +++|+.+++.+++++..    .+.+   .+|.
T Consensus      2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D         2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp             HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence               2    1  499999999971             11345555    78899999998888743    2321   2222


Q ss_pred             -ecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH----H----cCCcEEEEecCccc-CCCCCCc-eeecccc
Q 022216          180 -ISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR----K----SGINYTIIRPGGLR-NEPPTGN-IIMETED  248 (301)
Q Consensus       180 -~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~----~----~~i~~~~irpg~v~-~~~~~~~-~~~~~~~  248 (301)
                       .|+..  +.. +           ....|+.+|.+.+.+.+    +    .+|+++.+.||++. +++.... .......
T Consensus      2292 ~~ss~~--g~~-g-----------~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~~~~~~ 2357 (3089)
T 3zen_D         2292 PGSPNR--GMF-G-----------GDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIVSAVE 2357 (3089)
T ss_dssp             EECSST--TSC-S-----------SCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTTHHHHG
T ss_pred             ECCccc--ccC-C-----------CchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhHHHHHH
Confidence             22211  100 0           12357777777765442    2    35899999999998 4432211 0000001


Q ss_pred             ccccCCCCHHHHHHHHHHHhcCCCCC----CcEE--EeecCCCCCCcCHHHHHHHh
Q 022216          249 TLYEGTISRDQVAEVAVEALLHPESS----YKVV--EIISRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       249 ~~~~~~v~~~Dva~~~~~~l~~~~~~----~~~~--~v~~~~~~~~~s~~e~~~~i  298 (301)
                      ........++|+|.+++ +|.++...    +...  .+.++-......+.|+...+
T Consensus      2358 ~~~~r~~~PeEIA~avl-fLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~ 2412 (3089)
T 3zen_D         2358 EAGVTTYTTDEMAAMLL-DLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKA 2412 (3089)
T ss_dssp             GGSCBCEEHHHHHHHHH-HTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHH
T ss_pred             hcCCCCCCHHHHHHHHH-HHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHH
Confidence            11123448999999995 56665522    2223  33343222257888887755

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.54  E-value=2.9e-14  Score=153.72  Aligned_cols=158  Identities=14%  Similarity=0.124  Sum_probs=115.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchhh---hcc---ccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAK---TTL---SKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~~---~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+|++|||||+|+||+++++.|+++|++ |++++|+..+.+   +..   ...+.++.++.+|++| .+++.+++..   
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd-~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASS-LDGARSLITEATQ 1961 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSS-HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCC-HHHHHHHHHHHHh
Confidence            5789999999999999999999999997 777788765432   111   1134678899999999 7666655432   


Q ss_pred             --CCCEEEEccCCCC--------CCCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 --DSEAVVCATGFQP--------GWDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~--------~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                        ++|+||||||+..        .++|...+++|+.|++++.+++...  ..++||++||.+..-..            .
T Consensus      1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~------------~ 2029 (2512)
T 2vz8_A         1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGN------------A 2029 (2512)
T ss_dssp             HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTC------------T
T ss_pred             cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCC------------C
Confidence              4999999999743        2568889999999999999988654  34799999998743211            1


Q ss_pred             hhhHHHHHHHHHHHHHH---HcCCcEEEEecCcccC
Q 022216          203 VFGLTLIAKLQAEQYIR---KSGINYTIIRPGGLRN  235 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~---~~~i~~~~irpg~v~~  235 (301)
                      ....|..+|...+.+.+   ..|++...+..|.+.+
T Consensus      2030 g~~~Y~aaKaal~~l~~~rr~~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A         2030 GQANYGFANSAMERICEKRRHDGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCBCT
T ss_pred             CcHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            23679999999997664   5799988888876543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.35  E-value=5.1e-12  Score=94.28  Aligned_cols=94  Identities=27%  Similarity=0.349  Sum_probs=79.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +++|+|+|+ |++|+.+++.|++.| ++|++++|++++.+.+.   ..++.++.+|+++ .+.+.+.+.+ +|+|||+++
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~---~~~~~~~~~d~~~-~~~~~~~~~~-~d~vi~~~~   78 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN---RMGVATKQVDAKD-EAGLAKALGG-FDAVISAAP   78 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH---TTTCEEEECCTTC-HHHHHHHTTT-CSEEEECSC
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHcC-CCEEEECCC
Confidence            579999999 999999999999999 89999999987776654   3577889999999 8899999998 999999995


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEE
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~  179 (301)
                      ..              ....+++++.+.++++|.+
T Consensus        79 ~~--------------~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           79 FF--------------LTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             GG--------------GHHHHHHHHHHTTCEEECC
T ss_pred             ch--------------hhHHHHHHHHHhCCCEEEe
Confidence            32              2578899999988755543

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.29  E-value=3.6e-11  Score=106.62  Aligned_cols=163  Identities=16%  Similarity=0.072  Sum_probs=105.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHH-HCCCeEEEEEeCCchhhh---------------ccccCCCCeEEEEccCCCChHh
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLL-AKGFAVKAGVRDLDKAKT---------------TLSKDNPSLQIVKADVTEGSAK  127 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~-~~G~~V~~~~r~~~~~~~---------------~~~~~~~~~~~~~~Dl~~~~~~  127 (301)
                      ..+|++|||||++|||.+++.+|+ +.|..|+++.+..+..++               ...+.+.....+.+|++| ++.
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d-~e~  126 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFS-DEI  126 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTS-HHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCC-HHH
Confidence            457999999999999999999998 679999988876543321               112245788999999999 655


Q ss_pred             HHHHhcC------CCCEEEEccCCCCCCCCC-------------------------Cce---------eeehHHHH----
Q 022216          128 LSEAIGD------DSEAVVCATGFQPGWDLF-------------------------APW---------KVDNFGTV----  163 (301)
Q Consensus       128 ~~~~~~~------~~d~Vi~~Ag~~~~~~~~-------------------------~~~---------~~N~~g~~----  163 (301)
                      +.+.+..      ++|+|||++|.....+++                         ..+         +-++.++.    
T Consensus       127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg  206 (401)
T 4ggo_A          127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG  206 (401)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence            5544422      499999999865321110                         000         01122332    


Q ss_pred             -----HHHHHHHHcCC----CEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH-----cCCcEEEEe
Q 022216          164 -----NLVEACRKRGV----NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-----SGINYTIIR  229 (301)
Q Consensus       164 -----~l~~a~~~~~~----~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-----~~i~~~~ir  229 (301)
                           ..+++....++    .++|.+|+..   ..       -..+....+.++..|...|...+.     .+++++++.
T Consensus       207 ~s~~s~w~~al~~a~lla~G~siva~SYiG---se-------~t~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v  276 (401)
T 4ggo_A          207 GEDWERWIKQLSKEGLLEEGCITLAYSYIG---PE-------ATQALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSV  276 (401)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEECCC---CG-------GGHHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             hhHHHHHHHHHHhhhcccCCceEEEEeccC---cc-------eeecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                 23344444432    5888888864   11       111111124689999999976542     367899999


Q ss_pred             cCcccCCC
Q 022216          230 PGGLRNEP  237 (301)
Q Consensus       230 pg~v~~~~  237 (301)
                      ++.+.|..
T Consensus       277 ~~a~vT~A  284 (401)
T 4ggo_A          277 NKGLVTRA  284 (401)
T ss_dssp             CCCCCCTT
T ss_pred             cCccccch
Confidence            99998874

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.26  E-value=6.3e-13  Score=115.48  Aligned_cols=100  Identities=24%  Similarity=0.210  Sum_probs=77.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC--CCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      ..+++|+++||||+|++|+++++.|+++|++|+++.|+.++.+++....  ..++.++.+|++| .+++.+.+.+ +|+|
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~-~Dvl  192 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD-DASRAEAVKG-AHFV  192 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS-HHHHHHHTTT-CSEE
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC-HHHHHHHHHh-CCEE
Confidence            3467899999999999999999999999999999999877665443211  1246778899999 8889999999 9999


Q ss_pred             EEccCCCC---------C-CCCCCceeeehHHHH
Q 022216          140 VCATGFQP---------G-WDLFAPWKVDNFGTV  163 (301)
Q Consensus       140 i~~Ag~~~---------~-~~~~~~~~~N~~g~~  163 (301)
                      |||||...         . .++...+++|+.+..
T Consensus       193 Vn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~  226 (287)
T 1lu9_A          193 FTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL  226 (287)
T ss_dssp             EECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred             EECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence            99997421         1 234456777777765

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=99.06  E-value=2.2e-09  Score=88.95  Aligned_cols=175  Identities=7%  Similarity=0.113  Sum_probs=100.9

Q ss_pred             cccCCeEEEEcC----------------CchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChH
Q 022216           63 SVKQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA  126 (301)
Q Consensus        63 ~~~~~~vlVtGa----------------tG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~  126 (301)
                      .+++|+||||||                +|++|.+++++|+++|++|+++.++.. ++     ...++.  ..|+++ .+
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-----~~~g~~--~~dv~~-~~   75 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-----TPPFVK--RVDVMT-AL   75 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-----CCTTEE--EEECCS-HH
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-----cCCCCe--EEccCc-HH
Confidence            467999999999                699999999999999999999877652 11     112333  468877 43


Q ss_pred             ----hHHHHhcCCCCEEEEccCCCCC-------CCCCC------ceeeehHHHHHHHHHHHHc-CCCEEEEecccccccc
Q 022216          127 ----KLSEAIGDDSEAVVCATGFQPG-------WDLFA------PWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGA  188 (301)
Q Consensus       127 ----~~~~~~~~~~d~Vi~~Ag~~~~-------~~~~~------~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~  188 (301)
                          .+.+.+++ +|++|||||+...       .....      .+...+.-+-.++..+.+. ..+++ .++-...   
T Consensus        76 ~~~~~v~~~~~~-~Dili~~Aav~d~~p~~~~~~KIkk~~~~~~~l~l~L~~~pdIL~~l~~~~~~~~~-~VGFaaE---  150 (226)
T 1u7z_A           76 EMEAAVNASVQQ-QNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPY-VVGFAAE---  150 (226)
T ss_dssp             HHHHHHHHHGGG-CSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECCCHHHHHHHCSSSCCE-EEEEEEE---
T ss_pred             HHHHHHHHhcCC-CCEEEECCcccCCCCccCChHHhccccccCCceEEEEeecHHHHHHHHhhhcCCcE-EEEcchh---
Confidence                33444566 9999999997531       11111      1233344455567777654 22333 3333221   


Q ss_pred             cCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEEEEecCccc-CCCCCCc---eeeccccccccCCCCHHHHHHHH
Q 022216          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLR-NEPPTGN---IIMETEDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~~irpg~v~-~~~~~~~---~~~~~~~~~~~~~v~~~Dva~~~  264 (301)
                             ..       .   ..+.+- +-++++|+++++..+-.-. +.+....   ..+...........+-+++|+.+
T Consensus       151 -------t~-------~---l~e~A~-~kL~~k~~d~ivaN~~~~~~~~f~~~~n~v~li~~~~~~~~~~~sK~~vA~~I  212 (226)
T 1u7z_A          151 -------TN-------N---VEEYAR-QKRIRKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERKELLGQLL  212 (226)
T ss_dssp             -------SS-------S---HHHHHH-HHHHHHTCSEEEEEECSSTTSSTTSSEEEEEEEETTEEEEEEEEEHHHHHHHH
T ss_pred             -------hc-------h---HHHHHH-HHHHhcCCCEEEEeeccccCCccCCCceEEEEEeCCCcEecCCCCHHHHHHHH
Confidence                   00       0   111122 2255799999988876421 1222221   22222222222346788999988


Q ss_pred             HHHhc
Q 022216          265 VEALL  269 (301)
Q Consensus       265 ~~~l~  269 (301)
                      +..+.
T Consensus       213 ~~~i~  217 (226)
T 1u7z_A          213 LDEIV  217 (226)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87664

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=99.04  E-value=6e-10  Score=98.24  Aligned_cols=113  Identities=12%  Similarity=0.060  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhh--hccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAK--TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +++|+||||+|++|..++..|++.|  .+|++++++++...  ++.. ...... +.. +.+ ..++.+++++ .|+|||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~-~~~~~~-v~~-~~~-t~d~~~al~g-aDvVi~   82 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISH-MDTGAV-VRG-FLG-QQQLEAALTG-MDLIIV   82 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHT-SCSSCE-EEE-EES-HHHHHHHHTT-CSEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhc-ccccce-EEE-EeC-CCCHHHHcCC-CCEEEE
Confidence            5799999999999999999999998  78998887765211  1111 111111 111 223 4567788999 999999


Q ss_pred             ccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +||....  .+....+..|+.++.++++++++.+.+.+|+++|-
T Consensus        83 ~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN  126 (326)
T 1smk_A           83 PAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN  126 (326)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             cCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence            9996542  23445678999999999999999887777777763

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=99.01  E-value=2.8e-09  Score=82.01  Aligned_cols=104  Identities=23%  Similarity=0.197  Sum_probs=77.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~  142 (301)
                      +++++|+|+|+ |.+|+.+++.|.+.|++|++++|+++..+.+..   .....+.+|.++ .+.+.++ +.+ +|+||++
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~---~~~~~~~~d~~~-~~~l~~~~~~~-~d~vi~~   77 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS---YATHAVIANATE-ENELLSLGIRN-FEYVIVA   77 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT---TCSEEEECCTTC-HHHHHTTTGGG-CSEEEEC
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hCCEEEEeCCCC-HHHHHhcCCCC-CCEEEEC
Confidence            34678999998 999999999999999999999998776655432   345678899998 7777665 667 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILV  185 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~  185 (301)
                      ++..            ......+++.+++.+.+++|..++...
T Consensus        78 ~~~~------------~~~~~~~~~~~~~~~~~~ii~~~~~~~  108 (144)
T 2hmt_A           78 IGAN------------IQASTLTTLLLKELDIPNIWVKAQNYY  108 (144)
T ss_dssp             CCSC------------HHHHHHHHHHHHHTTCSEEEEECCSHH
T ss_pred             CCCc------------hHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            8631            112234677778888778877666543

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.00  E-value=8.4e-11  Score=103.91  Aligned_cols=113  Identities=12%  Similarity=0.056  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeC----Cchhhhc---cccCCCCeEEEEccCCCChHhHHHH
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRD----LDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEA  131 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~----~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~  131 (301)
                      .++|+||||+|++|++++..|+..|.       +|++++++    .++.+..   +......+   ..|+.. .....++
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~---~~~i~~-~~~~~~a   80 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL---LAGMTA-HADPMTA   80 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT---EEEEEE-ESSHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc---cCcEEE-ecCcHHH
Confidence            47999999999999999999999885       78887777    3322210   11110111   235554 4557888


Q ss_pred             hcCCCCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcC-CC-EEEEeccc
Q 022216          132 IGDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRG-VN-RFILISSI  183 (301)
Q Consensus       132 ~~~~~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~-~~-~iV~~SS~  183 (301)
                      +++ +|+|||+||....  .+....++.|+.++.++++++++.+ .+ +||++|..
T Consensus        81 l~~-aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNP  135 (329)
T 1b8p_A           81 FKD-ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNP  135 (329)
T ss_dssp             TTT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             hCC-CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence            999 9999999996542  2333466899999999999999884 54 89999874

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.92  E-value=1.3e-10  Score=102.08  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEe--CCchhhh----cc---ccCCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVR--DLDKAKT----TL---SKDNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r--~~~~~~~----~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      |+|+||||+|++|++++..|+..|.  ++.++++  +.++.+.    +.   ......+.+...     .+++.+++++ 
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~-----~d~l~~al~g-   74 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVE-----SDENLRIIDE-   74 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEE-----ETTCGGGGTT-
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeC-----CcchHHHhCC-
Confidence            5899999999999999999999885  5777776  4332221    11   001112222221     1235667889 


Q ss_pred             CCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +|+|||+||....  .+....++.|+.++.++++++++.+ +.+|+++|-
T Consensus        75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SN  123 (313)
T 1hye_A           75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITN  123 (313)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSS
T ss_pred             CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecC
Confidence            9999999996542  2333467899999999999999998 877777774

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.89  E-value=1.4e-08  Score=78.17  Aligned_cols=99  Identities=20%  Similarity=0.159  Sum_probs=74.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~A  143 (301)
                      ++++|+|+|+ |.+|+++++.|.++|++|++++++++..+.+..   .++.++.+|.++ ++.+.++ +.+ +|+||.+.
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~---~~~~~~~gd~~~-~~~l~~~~~~~-~d~vi~~~   78 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED---EGFDAVIADPTD-ESFYRSLDLEG-VSAVLITG   78 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---TTCEEEECCTTC-HHHHHHSCCTT-CSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH---CCCcEEECCCCC-HHHHHhCCccc-CCEEEEec
Confidence            3678999998 999999999999999999999999887766543   467889999999 7777665 345 99999887


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +-             ......++..+++.+..++|...+
T Consensus        79 ~~-------------~~~n~~~~~~a~~~~~~~iia~~~  104 (141)
T 3llv_A           79 SD-------------DEFNLKILKALRSVSDVYAIVRVS  104 (141)
T ss_dssp             SC-------------HHHHHHHHHHHHHHCCCCEEEEES
T ss_pred             CC-------------HHHHHHHHHHHHHhCCceEEEEEc
Confidence            51             122345666777766555555443

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.86  E-value=1.3e-09  Score=95.05  Aligned_cols=108  Identities=14%  Similarity=0.077  Sum_probs=75.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEe--CCchhhhccc---c---CCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVR--DLDKAKTTLS---K---DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r--~~~~~~~~~~---~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      |+|+||||+|++|..++..|+..|.  +++++++  +.++++....   .   ...++.+.. +  +     .+++++ .
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~-----~~a~~~-a   71 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G-----YEDTAG-S   71 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C-----GGGGTT-C
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C-----HHHhCC-C
Confidence            5899999999999999999999885  6777777  4433221110   0   112233322 1  1     345788 9


Q ss_pred             CEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          137 EAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       137 d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |+|||+||....  ......+..|+.++.++++++++.+.+.+|+++|-
T Consensus        72 DvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN  120 (303)
T 1o6z_A           72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (303)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            999999996542  22234578999999999999999987777777664

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.85  E-value=7.9e-09  Score=95.00  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=80.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++|+|+|+| +|++|+++++.|++.|++|++.+|+.++.+++.. ...++..+.+|++| .+++.+++.+ +|+||||++
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~-~~~~~~~~~~Dv~d-~~~l~~~l~~-~DvVIn~a~   77 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA-GVQHSTPISLDVND-DAALDAEVAK-HDLVISLIP   77 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTT-TCTTEEEEECCTTC-HHHHHHHHTT-SSEEEECCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHH-hcCCceEEEeecCC-HHHHHHHHcC-CcEEEECCc
Confidence            578999998 7999999999999999999999998877666543 22357788999999 7888899998 999999998


Q ss_pred             CCCCC--------CCCCceeee--hHHHHHHHHHHHHcCC
Q 022216          145 FQPGW--------DLFAPWKVD--NFGTVNLVEACRKRGV  174 (301)
Q Consensus       145 ~~~~~--------~~~~~~~~N--~~g~~~l~~a~~~~~~  174 (301)
                      .....        .-..+++.+  ...+.++++++++.|+
T Consensus        78 ~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv  117 (450)
T 1ff9_A           78 YTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI  117 (450)
T ss_dssp             --CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred             cccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence            53210        001122221  3467889999999886

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.80  E-value=1.5e-08  Score=84.13  Aligned_cols=75  Identities=27%  Similarity=0.404  Sum_probs=55.3

Q ss_pred             cCCeEEEEcC----------------CchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCCh---
Q 022216           65 KQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS---  125 (301)
Q Consensus        65 ~~~~vlVtGa----------------tG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~---  125 (301)
                      +||+||||||                +|++|.++|++|+++|++|+++.|+... ...   ...++..+  |+....   
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~-~~~---~~~~~~~~--~v~s~~em~   75 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRAL-KPE---PHPNLSIR--EITNTKDLL   75 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSC-CCC---CCTTEEEE--ECCSHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccc-ccc---CCCCeEEE--EHhHHHHHH
Confidence            4899999999                9999999999999999999999987542 110   12345544  444411   


Q ss_pred             HhHHHHhcCCCCEEEEccCCC
Q 022216          126 AKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus       126 ~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      +.+.+.+++ +|++|||||+.
T Consensus        76 ~~v~~~~~~-~Dili~aAAvs   95 (232)
T 2gk4_A           76 IEMQERVQD-YQVLIHSMAVS   95 (232)
T ss_dssp             HHHHHHGGG-CSEEEECSBCC
T ss_pred             HHHHHhcCC-CCEEEEcCccc
Confidence            455556677 99999999975

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.79  E-value=8.6e-09  Score=95.00  Aligned_cols=107  Identities=17%  Similarity=0.240  Sum_probs=80.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ++++++|+|+|+ |++|+++++.|++. |++|++.+|+.++.+++...  .++..+.+|+.| .+++.+++.+ +|+|||
T Consensus        20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~--~~~~~~~~D~~d-~~~l~~~l~~-~DvVIn   94 (467)
T 2axq_A           20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP--SGSKAISLDVTD-DSALDKVLAD-NDVVIS   94 (467)
T ss_dssp             ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG--GTCEEEECCTTC-HHHHHHHHHT-SSEEEE
T ss_pred             CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh--cCCcEEEEecCC-HHHHHHHHcC-CCEEEE
Confidence            456789999998 99999999999998 78999999998877665532  356778899999 7888888988 999999


Q ss_pred             ccCCCCC--------CCCCCceeeeh--HHHHHHHHHHHHcCC
Q 022216          142 ATGFQPG--------WDLFAPWKVDN--FGTVNLVEACRKRGV  174 (301)
Q Consensus       142 ~Ag~~~~--------~~~~~~~~~N~--~g~~~l~~a~~~~~~  174 (301)
                      |++....        .....+++++.  .....+++++++.|+
T Consensus        95 ~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv  137 (467)
T 2axq_A           95 LIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI  137 (467)
T ss_dssp             CSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred             CCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence            9985321        01123445544  345778888888775

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.78  E-value=9.4e-09  Score=93.32  Aligned_cols=96  Identities=19%  Similarity=0.319  Sum_probs=74.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC---CeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhcC-CCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGD-DSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G---~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~  138 (301)
                      ++|+|+|| |+||+.+++.|++.|   .+|++.+|+.++.+++...    ...++..+.+|++| .+++.+++.+ ++|+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d-~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS-IEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC-HHHHHHHHHHHCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC-HHHHHHHHHhhCCCE
Confidence            68999999 999999999999998   3899999998877654432    12368899999999 8888888876 5899


Q ss_pred             EEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEE
Q 022216          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (301)
Q Consensus       139 Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~  179 (301)
                      ||||++...              ...++++|.+.|+ +++-
T Consensus        80 Vin~ag~~~--------------~~~v~~a~l~~g~-~vvD  105 (405)
T 4ina_A           80 VLNIALPYQ--------------DLTIMEACLRTGV-PYLD  105 (405)
T ss_dssp             EEECSCGGG--------------HHHHHHHHHHHTC-CEEE
T ss_pred             EEECCCccc--------------ChHHHHHHHHhCC-CEEE
Confidence            999997421              2456777777764 3443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.77  E-value=6e-08  Score=74.08  Aligned_cols=99  Identities=24%  Similarity=0.311  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      +|+|+|+|+ |.+|..+++.|.+.|++|++++|+++..+.+..  ..++.++.+|.++ .+.+.+. +.+ +|+||++.+
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~--~~~~~~~~~d~~~-~~~l~~~~~~~-~d~vi~~~~   78 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA--EIDALVINGDCTK-IKTLEDAGIED-ADMYIAVTG   78 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--HCSSEEEESCTTS-HHHHHHTTTTT-CSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH--hcCcEEEEcCCCC-HHHHHHcCccc-CCEEEEeeC
Confidence            578999997 999999999999999999999998776655432  1256778899988 6666554 566 999999974


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ..         +.|    ..+++.+++.+.+++|..++
T Consensus        79 ~~---------~~~----~~~~~~~~~~~~~~ii~~~~  103 (140)
T 1lss_A           79 KE---------EVN----LMSSLLAKSYGINKTIARIS  103 (140)
T ss_dssp             CH---------HHH----HHHHHHHHHTTCCCEEEECS
T ss_pred             Cc---------hHH----HHHHHHHHHcCCCEEEEEec
Confidence            21         122    34666777777777776443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.71  E-value=7e-08  Score=86.39  Aligned_cols=94  Identities=23%  Similarity=0.251  Sum_probs=74.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +.|+|+|.|| |++|+.+++.|.+ .++|.+.+|+.+++++..    ..+..+..|+.| .+++.+.+++ .|+||++++
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~----~~~~~~~~d~~d-~~~l~~~~~~-~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK----EFATPLKVDASN-FDKLVEVMKE-FELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT----TTSEEEECCTTC-HHHHHHHHTT-CSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh----ccCCcEEEecCC-HHHHHHHHhC-CCEEEEecC
Confidence            4678999998 9999999998866 589999899887776654    467788999999 8999999999 999999986


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEec
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~S  181 (301)
                      ...              ...++++|.+.|+ ++|-+|
T Consensus        87 ~~~--------------~~~v~~~~~~~g~-~yvD~s  108 (365)
T 3abi_A           87 GFL--------------GFKSIKAAIKSKV-DMVDVS  108 (365)
T ss_dssp             GGG--------------HHHHHHHHHHHTC-EEEECC
T ss_pred             Ccc--------------cchHHHHHHhcCc-ceEeee
Confidence            421              2467778877774 666554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.69  E-value=4.8e-07  Score=70.70  Aligned_cols=102  Identities=21%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~  142 (301)
                      ..+++|+|+|+ |.+|..+++.|.+.|++|++++|+++..+.+..  ..+..++.+|.++ .+.+.++ +.+ +|+||.+
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~--~~g~~~~~~d~~~-~~~l~~~~~~~-ad~Vi~~   91 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS--EFSGFTVVGDAAE-FETLKECGMEK-ADMVFAF   91 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT--TCCSEEEESCTTS-HHHHHTTTGGG-CSEEEEC
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh--cCCCcEEEecCCC-HHHHHHcCccc-CCEEEEE
Confidence            35789999996 999999999999999999999999887765431  2456778899888 6666655 667 9999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHH-cCCCEEEEeccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRK-RGVNRFILISSI  183 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~-~~~~~iV~~SS~  183 (301)
                      .+..             .....+++.+++ .+..++|...+.
T Consensus        92 ~~~~-------------~~~~~~~~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           92 TNDD-------------STNFFISMNARYMFNVENVIARVYD  120 (155)
T ss_dssp             SSCH-------------HHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred             eCCc-------------HHHHHHHHHHHHHCCCCeEEEEECC
Confidence            7521             123455666776 565667665554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.67  E-value=1.5e-07  Score=73.43  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=72.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~  142 (301)
                      ..++++|+|+ |.+|+.+++.|.+.|++|+++++++ +..+.+......++.++.+|.+| .+.+.++ +.+ .|+||.+
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~-~~~l~~a~i~~-ad~vi~~   78 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSND-SSVLKKAGIDR-CRAILAL   78 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS-HHHHHHHTTTT-CSEEEEC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCC-HHHHHHcChhh-CCEEEEe
Confidence            3578999996 9999999999999999999999975 33322221123568999999999 7888776 777 9999988


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEec
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILIS  181 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~S  181 (301)
                      .+..         +.    ...++..+++. +..++|...
T Consensus        79 ~~~d---------~~----n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           79 SDND---------AD----NAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             SSCH---------HH----HHHHHHHHHHHTSSSCEEEEC
T ss_pred             cCCh---------HH----HHHHHHHHHHHCCCCEEEEEE
Confidence            7421         12    34456666665 555666543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.52  E-value=2.9e-08  Score=87.42  Aligned_cols=112  Identities=14%  Similarity=0.055  Sum_probs=79.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--e-----EEEEEeCCc--hhh----hccccCCCCeEEEEccCCCChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--A-----VKAGVRDLD--KAK----TTLSKDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~-----V~~~~r~~~--~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      .++|+||||+|+||++++..|+..|.  +     ++++++++.  .++    ++.....+-..    ++.. .....+.+
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~----~~~~-~~~~~~~~   77 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLK----DVIA-TDKEEIAF   77 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEE----EEEE-ESCHHHHT
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccC----CEEE-cCCcHHHh
Confidence            46899999999999999999998875  5     888777642  221    11110111121    2221 23356778


Q ss_pred             cCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC--EEEEeccc
Q 022216          133 GDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN--RFILISSI  183 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~--~iV~~SS~  183 (301)
                      ++ .|+||++||...  ..+....++.|+..+..+++++++.+.+  +++.+|..
T Consensus        78 ~d-aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP  131 (333)
T 5mdh_A           78 KD-LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP  131 (333)
T ss_dssp             TT-CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             CC-CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence            89 999999999643  4566778899999999999999998764  57777764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.45  E-value=9.9e-07  Score=70.81  Aligned_cols=98  Identities=17%  Similarity=0.226  Sum_probs=73.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH--hcCCCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA--IGDDSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~~~d~Vi  140 (301)
                      +.+++|+|+|+ |.+|..+++.|.+. |++|+++++++++.+.+..   .++.++.+|.++ .+.+.++  +.+ +|+||
T Consensus        37 ~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~---~g~~~~~gd~~~-~~~l~~~~~~~~-ad~vi  110 (183)
T 3c85_A           37 PGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS---EGRNVISGDATD-PDFWERILDTGH-VKLVL  110 (183)
T ss_dssp             CTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH---TTCCEEECCTTC-HHHHHTBCSCCC-CCEEE
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH---CCCCEEEcCCCC-HHHHHhccCCCC-CCEEE
Confidence            45778999995 99999999999999 9999999999887766543   457788899998 7777766  667 99999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEe
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILI  180 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~  180 (301)
                      .+.+.             ......+++.+++.+ ..++|..
T Consensus       111 ~~~~~-------------~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          111 LAMPH-------------HQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             ECCSS-------------HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EeCCC-------------hHHHHHHHHHHHHHCCCCEEEEE
Confidence            87742             122345666777766 3455543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.40  E-value=3.8e-07  Score=74.18  Aligned_cols=100  Identities=14%  Similarity=0.103  Sum_probs=67.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+||+|+||..+++.+...|++|++++|++++.+.... .  +... ..|.++.  .+.+.+...+ ++|+||+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~--g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~  113 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR-L--GVEY-VGDSRSVDFADEILELTDGYGVDVVLN  113 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT-T--CCSE-EEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--CCCE-EeeCCcHHHHHHHHHHhCCCCCeEEEE
Confidence            47899999999999999999999999999999998766554432 2  2221 2476662  1334444332 4999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |+|..              .....++.++..  +++|.+++..
T Consensus       114 ~~g~~--------------~~~~~~~~l~~~--G~~v~~g~~~  140 (198)
T 1pqw_A          114 SLAGE--------------AIQRGVQILAPG--GRFIELGKKD  140 (198)
T ss_dssp             CCCTH--------------HHHHHHHTEEEE--EEEEECSCGG
T ss_pred             CCchH--------------HHHHHHHHhccC--CEEEEEcCCC
Confidence            99721              123344444433  5899998864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.38  E-value=6.2e-07  Score=78.48  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=77.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhh--hccccCCC-CeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAK--TTLSKDNP-SLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~--~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      |+|.|+||+|++|..++..|++.|  .+|+++++++....  ++...... ++..+.    . .....+++++ .|+||+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~----~-t~d~~~a~~~-aDvVvi   74 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYL----G-PEQLPDCLKG-CDVVVI   74 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEE----S-GGGHHHHHTT-CSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEec----C-CCCHHHHhCC-CCEEEE
Confidence            589999999999999999999988  68999998762111  11110101 111111    0 1346678899 999999


Q ss_pred             ccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEeccc
Q 022216          142 ATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~  183 (301)
                      +||...  ..+....+..|+.....+++.+++.+. .++|++|-.
T Consensus        75 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNP  119 (314)
T 1mld_A           75 PAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP  119 (314)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred             CCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCC
Confidence            999654  233445678899999999999988764 477776553

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.38  E-value=1.8e-06  Score=71.42  Aligned_cols=98  Identities=17%  Similarity=0.282  Sum_probs=73.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag~  145 (301)
                      |+|+|+|+ |.+|+++++.|.+.|++|++++++++..+++..  ..++.++.+|.++ .+.+.++ +.+ .|+||.+.+.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~--~~~~~~i~gd~~~-~~~l~~a~i~~-ad~vi~~~~~   75 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK--KLKATIIHGDGSH-KEILRDAEVSK-NDVVVILTPR   75 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--HSSSEEEESCTTS-HHHHHHHTCCT-TCEEEECCSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH--HcCCeEEEcCCCC-HHHHHhcCccc-CCEEEEecCC
Confidence            57999997 999999999999999999999999887765432  1367889999999 7777776 566 9999987642


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHH-cCCCEEEEecc
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRK-RGVNRFILISS  182 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~-~~~~~iV~~SS  182 (301)
                      .         +.    ...++..+++ .+..++|....
T Consensus        76 d---------~~----n~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           76 D---------EV----NLFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             H---------HH----HHHHHHHHHHTSCCCEEEECCC
T ss_pred             c---------HH----HHHHHHHHHHHcCCCeEEEEEe
Confidence            1         11    2345666665 56667765433

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.28  E-value=1.3e-06  Score=78.31  Aligned_cols=106  Identities=11%  Similarity=0.083  Sum_probs=71.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +++++|+|+|+ |.||+.+++.|...|++|++.+|++++.+.........   +.+|..+ .+.+.+.+.+ +|+||+|+
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~---~~~~~~~-~~~l~~~~~~-~DvVi~~~  237 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR---VITLTAT-EANIKKSVQH-ADLLIGAV  237 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS---EEEEECC-HHHHHHHHHH-CSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCce---EEEecCC-HHHHHHHHhC-CCEEEECC
Confidence            56899999999 99999999999999999999999887665443212222   4567777 7788888888 99999999


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +.........       -+...++.+++ + +.||.+|+..
T Consensus       238 g~~~~~~~~l-------i~~~~l~~mk~-g-g~iV~v~~~~  269 (369)
T 2eez_A          238 LVPGAKAPKL-------VTRDMLSLMKE-G-AVIVDVAVDQ  269 (369)
T ss_dssp             C-------CC-------SCHHHHTTSCT-T-CEEEECC---
T ss_pred             CCCccccchh-------HHHHHHHhhcC-C-CEEEEEecCC
Confidence            8543111110       01233444432 2 5899988753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.26  E-value=2.6e-06  Score=65.34  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      .++|+|.|+ |.+|..+++.|.+.|++|++++++++..+.+..   .++.++.+|.++ .+.+.++ +.+ .|+||.+.+
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~---~g~~~i~gd~~~-~~~l~~a~i~~-ad~vi~~~~   80 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE---RGVRAVLGNAAN-EEIMQLAHLEC-AKWLILTIP   80 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---TTCEEEESCTTS-HHHHHHTTGGG-CSEEEECCS
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---cCCCEEECCCCC-HHHHHhcCccc-CCEEEEECC
Confidence            357999997 999999999999999999999999888776543   578889999999 6766654 456 999998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.23  E-value=1.9e-06  Score=75.86  Aligned_cols=100  Identities=13%  Similarity=0.100  Sum_probs=65.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC-C--hHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-G--SAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~--~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++||||||+|+||..+++.+.+.|++|++++|++++.+.... ....   ...|.++ .  .+.+.+...+++|+||+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~~---~~~d~~~~~~~~~~~~~~~~~~~d~vi~  220 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGFD---AAFNYKTVNSLEEALKKASPDGYDCYFD  220 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS---EEEETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCCc---EEEecCCHHHHHHHHHHHhCCCCeEEEE
Confidence            47899999999999999999999999999999988776655422 2221   2346665 1  12333332224999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |+|..              .....++.++..  +++|.++...
T Consensus       221 ~~g~~--------------~~~~~~~~l~~~--G~~v~~g~~~  247 (333)
T 1v3u_A          221 NVGGE--------------FLNTVLSQMKDF--GKIAICGAIS  247 (333)
T ss_dssp             SSCHH--------------HHHHHHTTEEEE--EEEEECCCCC
T ss_pred             CCChH--------------HHHHHHHHHhcC--CEEEEEeccc
Confidence            99721              122223333332  5899887754

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.22  E-value=2.5e-06  Score=74.35  Aligned_cols=80  Identities=24%  Similarity=0.292  Sum_probs=60.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeC---CchhhhccccC--CCCeEEEEccCCCChHhHHHHhcCC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD---LDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~---~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      ..+++++++|+|+ |++|++++..|++.|. +|++..|+   .++.+++....  ...+.+...++.+ .+.+.+.+.+ 
T Consensus       150 ~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~-~~~l~~~l~~-  226 (315)
T 3tnl_A          150 HDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED-HEQLRKEIAE-  226 (315)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHHT-
T ss_pred             CCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch-HHHHHhhhcC-
Confidence            4567999999997 8999999999999998 89999999   55555433211  1123344556766 6778888888 


Q ss_pred             CCEEEEccC
Q 022216          136 SEAVVCATG  144 (301)
Q Consensus       136 ~d~Vi~~Ag  144 (301)
                      .|+|||+..
T Consensus       227 aDiIINaTp  235 (315)
T 3tnl_A          227 SVIFTNATG  235 (315)
T ss_dssp             CSEEEECSS
T ss_pred             CCEEEECcc
Confidence            999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.19  E-value=1.2e-06  Score=75.00  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++++++|+|+ |++|++++..|++.|++|++..|+.++.+++.........   .+..+ .+.+.+  ++ +|+||+|
T Consensus       116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~---~~~~~-~~~~~~--~~-~DivVn~  187 (271)
T 1nyt_A          116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGS---IQALS-MDELEG--HE-FDLIINA  187 (271)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSS---EEECC-SGGGTT--CC-CSEEEEC
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCC---eeEec-HHHhcc--CC-CCEEEEC
Confidence            467899999998 8999999999999999999999998776554422111001   12233 222322  56 9999999


Q ss_pred             cCCC
Q 022216          143 TGFQ  146 (301)
Q Consensus       143 Ag~~  146 (301)
                      ++..
T Consensus       188 t~~~  191 (271)
T 1nyt_A          188 TSSG  191 (271)
T ss_dssp             CSCG
T ss_pred             CCCC
Confidence            9854

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.17  E-value=3.7e-06  Score=74.57  Aligned_cols=100  Identities=17%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCCh---HhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS---AKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~---~~~~~~~~~~~d~Vi~  141 (301)
                      .+++|||+|++|+||..+++.+...|++|++++|++++.+.... ..  .. ...|+++..   +.+.+...+++|+||+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~-~g--~~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~  244 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IG--GE-VFIDFTKEKDIVGAVLKATDGGAHGVIN  244 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH-TT--CC-EEEETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH-cC--Cc-eEEecCccHhHHHHHHHHhCCCCCEEEE
Confidence            47899999999999999999999999999999998877654332 22  22 224776411   2233332213999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ++|..             ......++.+++.  +++|.+++.
T Consensus       245 ~~g~~-------------~~~~~~~~~l~~~--G~iv~~g~~  271 (347)
T 2hcy_A          245 VSVSE-------------AAIEASTRYVRAN--GTTVLVGMP  271 (347)
T ss_dssp             CSSCH-------------HHHHHHTTSEEEE--EEEEECCCC
T ss_pred             CCCcH-------------HHHHHHHHHHhcC--CEEEEEeCC
Confidence            99731             1122233333332  589988775

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.15  E-value=7.5e-06  Score=68.33  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      .++++|.|+ |.+|+.+++.|.+.|+ |++++++++..+.+.    .++.++.+|.+| .+.+.++ +.+ .|.||.+.+
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~----~~~~~i~gd~~~-~~~l~~a~i~~-ad~vi~~~~   80 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR----SGANFVHGDPTR-VSDLEKANVRG-ARAVIVDLE   80 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH----TTCEEEESCTTC-HHHHHHTTCTT-CSEEEECCS
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh----cCCeEEEcCCCC-HHHHHhcCcch-hcEEEEcCC
Confidence            468999998 9999999999999999 999998887765543    468899999999 7777776 677 999998764


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      ..             .....++..+++.+.+ ++|.-.+
T Consensus        81 ~d-------------~~n~~~~~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           81 SD-------------SETIHCILGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             CH-------------HHHHHHHHHHHHHCSSSEEEEECS
T ss_pred             Cc-------------HHHHHHHHHHHHHCCCCeEEEEEC
Confidence            11             1234456667776654 5555433

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.13  E-value=3.6e-06  Score=74.21  Aligned_cols=101  Identities=15%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++|||+||+|+||..+++.+...|++|++++|++++.+....+.+..   ...|..+.  .+.+.+...+++|+||+|
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~~  225 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD---GAIDYKNEDLAAGLKRECPKGIDVFFDN  225 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCS---EEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCC---EEEECCCHHHHHHHHHhcCCCceEEEEC
Confidence            4789999999999999999999999999999999887776552212221   12355541  233444333259999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +|..              .....++.++..  +++|.++...
T Consensus       226 ~g~~--------------~~~~~~~~l~~~--G~iv~~G~~~  251 (336)
T 4b7c_A          226 VGGE--------------ILDTVLTRIAFK--ARIVLCGAIS  251 (336)
T ss_dssp             SCHH--------------HHHHHHTTEEEE--EEEEECCCGG
T ss_pred             CCcc--------------hHHHHHHHHhhC--CEEEEEeecc
Confidence            9731              122233333333  5899988765

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.09  E-value=3.1e-06  Score=74.31  Aligned_cols=100  Identities=16%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+||+|+||..+++.+...|++|++++|++++.+.... ....   ...|.++.  .+.+.+...+ ++|+||+
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~~~~~D~vi~  215 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AGAW---QVINYREEDLVERLKEITGGKKVRVVYD  215 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTCS---EEEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC---EEEECCCccHHHHHHHHhCCCCceEEEE
Confidence            47899999999999999999999999999999998766554432 1111   12466552  1344444432 4999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |+|..              .....++.++..  +++|.+++..
T Consensus       216 ~~g~~--------------~~~~~~~~l~~~--G~iv~~g~~~  242 (327)
T 1qor_A          216 SVGRD--------------TWERSLDCLQRR--GLMVSFGNSS  242 (327)
T ss_dssp             CSCGG--------------GHHHHHHTEEEE--EEEEECCCTT
T ss_pred             CCchH--------------HHHHHHHHhcCC--CEEEEEecCC
Confidence            99821              123344444433  5899988753

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.08  E-value=3.9e-06  Score=73.93  Aligned_cols=99  Identities=16%  Similarity=0.137  Sum_probs=67.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+||+|+||..+++.+...|++|++++|++++.+.... ....   ...|.++.  .+.+.+...+ ++|+||+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g~~---~~~d~~~~~~~~~i~~~~~~~~~d~vi~  220 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-LGCH---HTINYSTQDFAEVVREITGGKGVDVVYD  220 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCS---EEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCC---EEEECCCHHHHHHHHHHhCCCCCeEEEE
Confidence            47899999999999999999999999999999998766554432 1111   12366552  1344444432 4999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |+|..              .....++.++..  +++|.++..
T Consensus       221 ~~g~~--------------~~~~~~~~l~~~--G~iv~~g~~  246 (333)
T 1wly_A          221 SIGKD--------------TLQKSLDCLRPR--GMCAAYGHA  246 (333)
T ss_dssp             CSCTT--------------THHHHHHTEEEE--EEEEECCCT
T ss_pred             CCcHH--------------HHHHHHHhhccC--CEEEEEecC
Confidence            99841              123344444433  588888765

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.07  E-value=6e-07  Score=79.26  Aligned_cols=116  Identities=13%  Similarity=0.032  Sum_probs=74.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      ++++|.|+|++|++|+.++..++..|  .+|++++++.++++....+..... +-..++.- .....+++++ .|+||.+
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~-~~~~~i~~-t~d~~~al~d-ADvVvit   83 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG-FEGLNLTF-TSDIKEALTD-AKYIVSS   83 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC-CTTCCCEE-ESCHHHHHTT-EEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc-CCCCceEE-cCCHHHHhCC-CCEEEEc
Confidence            47899999999999999999999998  489998887654432110000000 00011111 1235677888 9999999


Q ss_pred             cCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCE--EEEeccc
Q 022216          143 TGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNR--FILISSI  183 (301)
Q Consensus       143 Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~--iV~~SS~  183 (301)
                      ||....  .+....++.|......+++.+.+.+.+-  ++.+|..
T Consensus        84 aG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNP  128 (343)
T 3fi9_A           84 GGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP  128 (343)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCc
Confidence            996432  2333456789999999999998876433  5666553

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.06  E-value=7.7e-06  Score=72.33  Aligned_cols=101  Identities=14%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC---hHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG---SAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++|||+||+|+||..+++.+...|++|++++|++++.+......+..   ...|..+.   .+.+.+...+++|+||+
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~---~~~d~~~~~~~~~~~~~~~~~~~d~vi~  231 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFD---DAFNYKEESDLTAALKRCFPNGIDIYFE  231 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCS---EEEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc---eEEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence            4789999999999999999999999999999999877765543112222   12366541   23333333224999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |+|..              .....++.++..  +++|.++...
T Consensus       232 ~~g~~--------------~~~~~~~~l~~~--G~~v~~G~~~  258 (345)
T 2j3h_A          232 NVGGK--------------MLDAVLVNMNMH--GRIAVCGMIS  258 (345)
T ss_dssp             SSCHH--------------HHHHHHTTEEEE--EEEEECCCGG
T ss_pred             CCCHH--------------HHHHHHHHHhcC--CEEEEEcccc
Confidence            98721              122233333332  5898887654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.06  E-value=5.9e-06  Score=73.52  Aligned_cols=101  Identities=16%  Similarity=0.104  Sum_probs=66.7

Q ss_pred             cC--CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEE
Q 022216           65 KQ--KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~--~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~V  139 (301)
                      .+  ++|||+||+|+||..+++.+...|+ +|+++++++++.+......+.  . ...|..+.  .+.+.+...+++|+|
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~--~-~~~d~~~~~~~~~~~~~~~~~~d~v  234 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF--D-AAINYKKDNVAEQLRESCPAGVDVY  234 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC--S-EEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC--c-eEEecCchHHHHHHHHhcCCCCCEE
Confidence            46  8999999999999999999999999 999999987665544321222  1 23466551  133333332249999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |+|+|.              ......++.++..  +++|.++...
T Consensus       235 i~~~G~--------------~~~~~~~~~l~~~--G~iv~~G~~~  263 (357)
T 2zb4_A          235 FDNVGG--------------NISDTVISQMNEN--SHIILCGQIS  263 (357)
T ss_dssp             EESCCH--------------HHHHHHHHTEEEE--EEEEECCCGG
T ss_pred             EECCCH--------------HHHHHHHHHhccC--cEEEEECCcc
Confidence            999972              1123334433333  5899887764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.05  E-value=7.4e-06  Score=72.76  Aligned_cols=76  Identities=16%  Similarity=0.227  Sum_probs=55.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+||+|+||..+++.+...|++|++++|++++.+.... ....   ...|..+.  .+.+.+...+ ++|+||+
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~ga~---~~~d~~~~~~~~~~~~~~~~~~~D~vi~  245 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ-NGAH---EVFNHREVNYIDKIKKYVGEKGIDIIIE  245 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS---EEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH-cCCC---EEEeCCCchHHHHHHHHcCCCCcEEEEE
Confidence            47899999999999999999999999999999998776654332 2221   12466552  1344444442 4999999


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      |+|
T Consensus       246 ~~G  248 (351)
T 1yb5_A          246 MLA  248 (351)
T ss_dssp             SCH
T ss_pred             CCC
Confidence            997

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=98.04  E-value=1.6e-05  Score=67.06  Aligned_cols=103  Identities=18%  Similarity=0.248  Sum_probs=70.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC-------------------chhhhccc---c--CCCCeEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL-------------------DKAKTTLS---K--DNPSLQIV  117 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~---~--~~~~~~~~  117 (301)
                      .+++++|+|.|+ |++|.++++.|++.|. ++++++++.                   .+.+....   .  ....+..+
T Consensus        28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            456899999997 9999999999999997 888888876                   23222111   1  12245555


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ..++++  +.+.+.+.+ .|+||.+..             |...-..+.+++++.++ .+|+.+..
T Consensus       107 ~~~~~~--~~~~~~~~~-~DvVi~~~d-------------~~~~~~~l~~~~~~~~~-p~i~~~~~  155 (249)
T 1jw9_B          107 NALLDD--AELAALIAE-HDLVLDCTD-------------NVAVRNQLNAGCFAAKV-PLVSGAAI  155 (249)
T ss_dssp             CSCCCH--HHHHHHHHT-SSEEEECCS-------------SHHHHHHHHHHHHHHTC-CEEEEEEE
T ss_pred             eccCCH--hHHHHHHhC-CCEEEEeCC-------------CHHHHHHHHHHHHHcCC-CEEEeeec
Confidence            666653  556777888 999999863             22334567777877774 46665444

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.03  E-value=6e-06  Score=73.43  Aligned_cols=99  Identities=8%  Similarity=0.016  Sum_probs=67.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+||+|+||..+++.+...|++|++++|++++.+.... ....   ...|..+.  .+.+.+...+ ++|+||+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~  237 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK-LGAA---AGFNYKKEDFSEATLKFTKGAGVNLILD  237 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTCS---EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCc---EEEecCChHHHHHHHHHhcCCCceEEEE
Confidence            47899999999999999999999999999999998776655422 1111   22455551  1344444432 4999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |+|..              .....++.++..  +++|.++..
T Consensus       238 ~~G~~--------------~~~~~~~~l~~~--G~iv~~G~~  263 (354)
T 2j8z_A          238 CIGGS--------------YWEKNVNCLALD--GRWVLYGLM  263 (354)
T ss_dssp             SSCGG--------------GHHHHHHHEEEE--EEEEECCCT
T ss_pred             CCCch--------------HHHHHHHhccCC--CEEEEEecc
Confidence            99841              123334444433  589888764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.98  E-value=1.3e-05  Score=70.20  Aligned_cols=110  Identities=17%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccc---c---CCCCeEEEEccCCCChHhHHHHhcC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLS---K---DNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~---~---~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      +..+++|.|+|+ |.+|..++..|+..|.  +++++++++++++....   .   ...++.+...   +     .+.+++
T Consensus         6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~---~-----~~a~~~   76 (326)
T 3vku_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSA---E-----YSDAKD   76 (326)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEEC---C-----GGGGTT
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEEC---c-----HHHhcC
Confidence            345789999997 9999999999999886  89998887665442110   0   0123333322   1     245788


Q ss_pred             CCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          135 DSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                       .|+||++||...  ..+....++.|..-...+++.+.+.+. ..++.+|.
T Consensus        77 -aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           77 -ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             -CSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             -CCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence             999999999643  344556788899999999999988764 35666554

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.98  E-value=7.7e-07  Score=76.90  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=54.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCC---eEEEEccCCCChHhHHHHhcCCCCE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPS---LQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      .++++|+++|||++ ++|+++++.|++.| +|++..|+.++.+++.......   ...+.+|+.+    +.+.+++ +|+
T Consensus       124 ~~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~----~~~~~~~-~Di  196 (287)
T 1nvt_A          124 GRVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSG----LDVDLDG-VDI  196 (287)
T ss_dssp             CCCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEEC----TTCCCTT-CCE
T ss_pred             CCcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEee----HHHhhCC-CCE
Confidence            35678999999985 99999999999999 9999999877665543211000   0011234444    1334566 999


Q ss_pred             EEEccCCC
Q 022216          139 VVCATGFQ  146 (301)
Q Consensus       139 Vi~~Ag~~  146 (301)
                      ||||+|..
T Consensus       197 lVn~ag~~  204 (287)
T 1nvt_A          197 IINATPIG  204 (287)
T ss_dssp             EEECSCTT
T ss_pred             EEECCCCC
Confidence            99999854

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.97  E-value=3e-05  Score=70.26  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=73.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      +++|+|.|. |.+|+.+++.|.+.|++|++++++++..+.+..   .++.++.+|.++ .+.+.++ +.+ .|+||.+.+
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~---~g~~vi~GDat~-~~~L~~agi~~-A~~viv~~~   77 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK---FGMKVFYGDATR-MDLLESAGAAK-AEVLINAID   77 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH---TTCCCEESCTTC-HHHHHHTTTTT-CSEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh---CCCeEEEcCCCC-HHHHHhcCCCc-cCEEEECCC
Confidence            468999997 999999999999999999999999888776543   567889999999 7777776 566 999998764


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEe
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILI  180 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~  180 (301)
                      -             -.....++..+++.+.. ++|--
T Consensus        78 ~-------------~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           78 D-------------PQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             S-------------HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             C-------------hHHHHHHHHHHHHhCCCCeEEEE
Confidence            1             23345567777766543 44443

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.96  E-value=1.2e-05  Score=70.77  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+||+|+||..+++.+...|++|+++++++++.+.... .+... +  .|..+.  .+.+.+...+ ++|+||+
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~ga~~-~--~~~~~~~~~~~~~~~~~~~g~D~vid  223 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE-YGAEY-L--INASKEDILRQVLKFTNGKGVDASFD  223 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSE-E--EETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCcE-E--EeCCCchHHHHHHHHhCCCCceEEEE
Confidence            47899999999999999999999999999999998777664432 22221 2  344431  2445555433 5999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |+|..              .....++.++..  +++|.++..
T Consensus       224 ~~g~~--------------~~~~~~~~l~~~--G~iv~~G~~  249 (334)
T 3qwb_A          224 SVGKD--------------TFEISLAALKRK--GVFVSFGNA  249 (334)
T ss_dssp             CCGGG--------------GHHHHHHHEEEE--EEEEECCCT
T ss_pred             CCChH--------------HHHHHHHHhccC--CEEEEEcCC
Confidence            99841              123344444443  589988764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.94  E-value=1.4e-05  Score=70.63  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      .+++|||+||+|+||..+++.+...|++|+++++++++.+.... .+.. .++..+ .+..+.+.+...+ ++|+||+|+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~ga~-~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~  235 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-VGAD-IVLPLE-EGWAKAVREATGGAGVDMVVDPI  235 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HTCS-EEEESS-TTHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCc-EEecCc-hhHHHHHHHHhCCCCceEEEECC
Confidence            47899999999999999999999999999999998877655432 1211 223333 2323555555544 599999999


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |..              .....+++++..  +++|.++..
T Consensus       236 g~~--------------~~~~~~~~l~~~--G~iv~~G~~  259 (342)
T 4eye_A          236 GGP--------------AFDDAVRTLASE--GRLLVVGFA  259 (342)
T ss_dssp             C----------------CHHHHHHTEEEE--EEEEEC---
T ss_pred             chh--------------HHHHHHHhhcCC--CEEEEEEcc
Confidence            842              123334444433  588888764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.92  E-value=1.1e-05  Score=69.85  Aligned_cols=77  Identities=18%  Similarity=0.302  Sum_probs=57.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++++++|+|+ |++|+.++..|++.|+ +|++..|+.++.+++.........    ++.+ .+.+.+.+.+ .|+||+
T Consensus       138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~----~~~~-~~~~~~~~~~-aDivIn  210 (297)
T 2egg_A          138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS----AYFS-LAEAETRLAE-YDIIIN  210 (297)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC----CEEC-HHHHHHTGGG-CSEEEE
T ss_pred             CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC----ceee-HHHHHhhhcc-CCEEEE
Confidence            467899999998 8999999999999998 999999998776655432211110    1122 3456677788 999999


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +.+..
T Consensus       211 ~t~~~  215 (297)
T 2egg_A          211 TTSVG  215 (297)
T ss_dssp             CSCTT
T ss_pred             CCCCC
Confidence            98753

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=97.91  E-value=5.4e-06  Score=77.62  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=62.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++++++|||| |++|++++..|++.|++|++..|+.++.+++.......+.    ++.| .+.+  .... +|+||||
T Consensus       361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~~----~~~d-l~~~--~~~~-~DilVN~  431 (523)
T 2o7s_A          361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKAL----SLTD-LDNY--HPED-GMVLANT  431 (523)
T ss_dssp             -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC-CE----ETTT-TTTC----CC-SEEEEEC
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCcee----eHHH-hhhc--cccC-ceEEEEC
Confidence            356889999999 7999999999999999999999998776665432222221    2222 1111  1234 8999999


Q ss_pred             cCCCCC-------------CCCCCceeeehHHH-HHHHHHHHHcCC
Q 022216          143 TGFQPG-------------WDLFAPWKVDNFGT-VNLVEACRKRGV  174 (301)
Q Consensus       143 Ag~~~~-------------~~~~~~~~~N~~g~-~~l~~a~~~~~~  174 (301)
                      +|....             .++...+++|+.+. -.+++.+++.|.
T Consensus       432 agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~  477 (523)
T 2o7s_A          432 TSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGA  477 (523)
T ss_dssp             SSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTC
T ss_pred             CCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCC
Confidence            985321             12334677887663 245666665553

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.90  E-value=1.2e-05  Score=69.04  Aligned_cols=76  Identities=21%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccC---CCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKD---NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      .+++++++|+|+ |++|++++..|++.|. +|++..|+.++.+++....   ...+.+...++.    ++.+.+.+ .|+
T Consensus       124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~----~l~~~l~~-~Di  197 (283)
T 3jyo_A          124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDAR----GIEDVIAA-ADG  197 (283)
T ss_dssp             TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECST----THHHHHHH-SSE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHH----HHHHHHhc-CCE
Confidence            467899999998 9999999999999998 7999999988766543211   112233333333    35666777 999


Q ss_pred             EEEccC
Q 022216          139 VVCATG  144 (301)
Q Consensus       139 Vi~~Ag  144 (301)
                      |||+..
T Consensus       198 VInaTp  203 (283)
T 3jyo_A          198 VVNATP  203 (283)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            999875

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.89  E-value=1.5e-05  Score=70.71  Aligned_cols=100  Identities=13%  Similarity=0.110  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++|||+||+|+||..+++.+...|++|+++++++++.+.... .+... .  .|..+.  .+.+.+...+++|+||+|
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~-~--~~~~~~~~~~~~~~~~~~g~Dvvid~  242 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-LGAKR-G--INYRSEDFAAVIKAETGQGVDIILDM  242 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCSE-E--EETTTSCHHHHHHHHHSSCEEEEEES
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCCE-E--EeCCchHHHHHHHHHhCCCceEEEEC
Confidence            47899999999999999999999999999999998877665442 12211 1  344441  244444443259999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +|..              .....++.++..  +++|.++...
T Consensus       243 ~g~~--------------~~~~~~~~l~~~--G~iv~~g~~~  268 (353)
T 4dup_A          243 IGAA--------------YFERNIASLAKD--GCLSIIAFLG  268 (353)
T ss_dssp             CCGG--------------GHHHHHHTEEEE--EEEEECCCTT
T ss_pred             CCHH--------------HHHHHHHHhccC--CEEEEEEecC
Confidence            9841              123334444333  5888887653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.89  E-value=1.2e-05  Score=70.55  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=67.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+||+|+||..+++.+...|++|+++++++++.+.... .+.. .+  .|..+.  .+.+.+...+ ++|+||+
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~-~~--~~~~~~~~~~~~~~~~~~~g~Dvvid  215 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA-LGAW-ET--IDYSHEDVAKRVLELTDGKKCPVVYD  215 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTCS-EE--EETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCC-EE--EeCCCccHHHHHHHHhCCCCceEEEE
Confidence            47899999999999999999999999999999998877665432 2211 12  344441  2445555543 5999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |+|..              .....++.++..  +++|.++...
T Consensus       216 ~~g~~--------------~~~~~~~~l~~~--G~iv~~g~~~  242 (325)
T 3jyn_A          216 GVGQD--------------TWLTSLDSVAPR--GLVVSFGNAS  242 (325)
T ss_dssp             SSCGG--------------GHHHHHTTEEEE--EEEEECCCTT
T ss_pred             CCChH--------------HHHHHHHHhcCC--CEEEEEecCC
Confidence            99841              122333333333  5899887653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.89  E-value=3.5e-05  Score=68.77  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=69.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+++|||+|+ |+||..+++.+...|++|+++++++++.+......+  ... ..|..+ .+.+.+...+ +|+||+++|
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lG--a~~-v~~~~~-~~~~~~~~~~-~D~vid~~g  260 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFG--ADS-FLVSRD-QEQMQAAAGT-LDGIIDTVS  260 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSC--CSE-EEETTC-HHHHHHTTTC-EEEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC--Cce-EEeccC-HHHHHHhhCC-CCEEEECCC
Confidence            5789999996 999999999999999999999988877655431122  221 246666 5667666666 999999998


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ....             ....+++++..  +++|.+++.
T Consensus       261 ~~~~-------------~~~~~~~l~~~--G~iv~~g~~  284 (366)
T 1yqd_A          261 AVHP-------------LLPLFGLLKSH--GKLILVGAP  284 (366)
T ss_dssp             SCCC-------------SHHHHHHEEEE--EEEEECCCC
T ss_pred             cHHH-------------HHHHHHHHhcC--CEEEEEccC
Confidence            5311             12344554443  589998875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.88  E-value=1.8e-05  Score=69.81  Aligned_cols=100  Identities=14%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+|++|+||..+++.+...|++|+++++++++.+.... .+... +  .|..+.  .+.+.+...+ ++|+||+
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lga~~-~--~~~~~~~~~~~~~~~~~~~g~Dvvid  219 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-LGAAY-V--IDTSTAPLYETVMELTNGIGADAAID  219 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCSE-E--EETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-CCCcE-E--EeCCcccHHHHHHHHhCCCCCcEEEE
Confidence            47899999999999999999998899999999998887665443 22221 2  244441  2444454443 5999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |+|..              .+...+++++..  +++|.++...
T Consensus       220 ~~g~~--------------~~~~~~~~l~~~--G~iv~~G~~~  246 (340)
T 3gms_A          220 SIGGP--------------DGNELAFSLRPN--GHFLTIGLLS  246 (340)
T ss_dssp             SSCHH--------------HHHHHHHTEEEE--EEEEECCCTT
T ss_pred             CCCCh--------------hHHHHHHHhcCC--CEEEEEeecC
Confidence            99732              122333333332  5899987653

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.88  E-value=2.1e-05  Score=68.37  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=57.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeC---CchhhhccccC--CCCeEEEEccCCCChHhHHHHhcCC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRD---LDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~---~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      ..+++++++|+|+ |++|++++..|++.|. +|++..|+   .++.+++....  ..+..+...++.+ .+.+.+.+.+ 
T Consensus       144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~-l~~~~~~l~~-  220 (312)
T 3t4e_A          144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD-QHAFTEALAS-  220 (312)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHHH-
T ss_pred             CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh-hhhhHhhccC-
Confidence            3467899999997 9999999999999998 89999999   55555433211  1123333445555 4445666777 


Q ss_pred             CCEEEEccCC
Q 022216          136 SEAVVCATGF  145 (301)
Q Consensus       136 ~d~Vi~~Ag~  145 (301)
                      .|+|||+...
T Consensus       221 ~DiIINaTp~  230 (312)
T 3t4e_A          221 ADILTNGTKV  230 (312)
T ss_dssp             CSEEEECSST
T ss_pred             ceEEEECCcC
Confidence            9999998653

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.87  E-value=2.7e-05  Score=68.95  Aligned_cols=99  Identities=16%  Similarity=0.161  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~~  142 (301)
                      +++|+|+||+|+||...++.+...|++|+++++++++.+.... .+.. .+  .|..+.  .+.+.+...+ ++|+||+|
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~-~~--~~~~~~~~~~~v~~~~~~~g~D~vid~  240 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD-IGAA-HV--LNEKAPDFEATLREVMKAEQPRIFLDA  240 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH-HTCS-EE--EETTSTTHHHHHHHHHHHHCCCEEEES
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCC-EE--EECCcHHHHHHHHHHhcCCCCcEEEEC
Confidence            3799999999999999999999999999999998877665442 2211 12  244331  2344444432 49999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +|..              .....+++++..  +++|.+++..
T Consensus       241 ~g~~--------------~~~~~~~~l~~~--G~iv~~G~~~  266 (349)
T 3pi7_A          241 VTGP--------------LASAIFNAMPKR--ARWIIYGRLD  266 (349)
T ss_dssp             SCHH--------------HHHHHHHHSCTT--CEEEECCCSC
T ss_pred             CCCh--------------hHHHHHhhhcCC--CEEEEEeccC
Confidence            9731              123344444433  6899987653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.85  E-value=1.3e-05  Score=71.50  Aligned_cols=77  Identities=16%  Similarity=0.222  Sum_probs=57.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +++++|+|+|+ |++|+.+++.|...|++|++.+|++++++.+.......+..   +..+ .+.+.+.+.+ +|+||+++
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~DvVI~~~  238 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVEL---LYSN-SAEIETAVAE-ADLLIGAV  238 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEE---EECC-HHHHHHHHHT-CSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEe---eeCC-HHHHHHHHcC-CCEEEECC
Confidence            45789999999 99999999999999999999999987766543211112212   2233 4567777788 99999999


Q ss_pred             CCC
Q 022216          144 GFQ  146 (301)
Q Consensus       144 g~~  146 (301)
                      +..
T Consensus       239 ~~~  241 (361)
T 1pjc_A          239 LVP  241 (361)
T ss_dssp             CCT
T ss_pred             CcC
Confidence            764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.84  E-value=1.9e-05  Score=69.85  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhc-CCCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIG-DDSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~-~~~d~Vi  140 (301)
                      .+++|||+|++|+||..+++.+... |++|+++++++++.+.... ....   ...|..+.  .+.+.+... +++|+||
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi  245 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-AGAD---YVINASMQDPLAEIRRITESKGVDAVI  245 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-HTCS---EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCC---EEecCCCccHHHHHHHHhcCCCceEEE
Confidence            5789999999999999999999999 9999999988776654432 1211   12355541  133555553 2399999


Q ss_pred             EccCC
Q 022216          141 CATGF  145 (301)
Q Consensus       141 ~~Ag~  145 (301)
                      +|+|.
T Consensus       246 ~~~g~  250 (347)
T 1jvb_A          246 DLNNS  250 (347)
T ss_dssp             ESCCC
T ss_pred             ECCCC
Confidence            99984

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.81  E-value=2.3e-05  Score=69.29  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=68.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+|++|++|..+++.+...|++|++++|++++.+.... ..  ... ..|..+.  .+.+.+...+ ++|+||+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g--a~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~  241 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA-LG--ADE-TVNYTHPDWPKEVRRLTGGKGADKVVD  241 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HT--CSE-EEETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC--CCE-EEcCCcccHHHHHHHHhCCCCceEEEE
Confidence            47899999999999999999999999999999998776655432 11  211 2466652  1344444432 4999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ++| ..             .....+++++..  +++|.+++..
T Consensus       242 ~~g-~~-------------~~~~~~~~l~~~--G~~v~~g~~~  268 (343)
T 2eih_A          242 HTG-AL-------------YFEGVIKATANG--GRIAIAGASS  268 (343)
T ss_dssp             SSC-SS-------------SHHHHHHHEEEE--EEEEESSCCC
T ss_pred             CCC-HH-------------HHHHHHHhhccC--CEEEEEecCC
Confidence            998 21             124445555443  4899887753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.77  E-value=6.5e-05  Score=65.80  Aligned_cols=109  Identities=15%  Similarity=0.105  Sum_probs=75.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhh----ccc---cCCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKT----TLS---KDNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~----~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      +.++|.|+|+ |++|..++..|+..|.  +|+++++++++.+.    +..   ....++.+...|        .+.+++ 
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~--------~~a~~~-   73 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT--------YEDCKD-   73 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC--------GGGGTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc--------HHHhCC-
Confidence            3679999996 9999999999999986  89999887765443    111   011233333222        235778 


Q ss_pred             CCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEeccc
Q 022216          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSI  183 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~  183 (301)
                      .|+||.+||....  .+....++.|..-...+++.+.+.+. ..++.+|..
T Consensus        74 aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP  124 (326)
T 3pqe_A           74 ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP  124 (326)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence            9999999996432  22334467888888999999988764 356666553

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.75  E-value=1.5e-05  Score=68.11  Aligned_cols=74  Identities=19%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCC--CeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP--SLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .+++++++|+|+ |++|++++..|++.|++|++..|+.++.+++......  .+..  .|+.+    +.+  .+ +|+||
T Consensus       116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~--~~~~~----~~~--~~-~DivI  185 (272)
T 1p77_A          116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA--VSMDS----IPL--QT-YDLVI  185 (272)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE--EEGGG----CCC--SC-CSEEE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE--eeHHH----hcc--CC-CCEEE
Confidence            457899999998 8999999999999999999999998776655421111  2222  23211    111  36 99999


Q ss_pred             EccCCC
Q 022216          141 CATGFQ  146 (301)
Q Consensus       141 ~~Ag~~  146 (301)
                      ++++..
T Consensus       186 n~t~~~  191 (272)
T 1p77_A          186 NATSAG  191 (272)
T ss_dssp             ECCCC-
T ss_pred             ECCCCC
Confidence            999754

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.75  E-value=3.6e-05  Score=68.61  Aligned_cols=100  Identities=18%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++|||+||+|+||..+++.+...|++|+++++++++.+.... .+.. .+  .|..+.  .+.+.+...+++|+||+|
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~-~~--~~~~~~~~~~~~~~~~~~g~D~vid~  238 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCD-RP--INYKTEPVGTVLKQEYPEGVDVVYES  238 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS-EE--EETTTSCHHHHHHHHCTTCEEEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-cCCc-EE--EecCChhHHHHHHHhcCCCCCEEEEC
Confidence            47899999999999999999999999999999998776654432 2221 12  244431  133333332249999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +|.              ......+++++..  +++|.+++..
T Consensus       239 ~g~--------------~~~~~~~~~l~~~--G~iv~~g~~~  264 (362)
T 2c0c_A          239 VGG--------------AMFDLAVDALATK--GRLIVIGFIS  264 (362)
T ss_dssp             SCT--------------HHHHHHHHHEEEE--EEEEECCCGG
T ss_pred             CCH--------------HHHHHHHHHHhcC--CEEEEEeCCC
Confidence            972              1133445555443  5899988764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.75  E-value=4.9e-05  Score=68.08  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+++|+|+|+ |.||+.+++.+...|++|++.+|++++++.........+   ..+..+ .+.+.+.+.+ .|+||++
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~---~~~~~~-~~~l~~~l~~-aDvVi~~  238 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRI---HTRYSS-AYELEGAVKR-ADLVIGA  238 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSS---EEEECC-HHHHHHHHHH-CSEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCee---EeccCC-HHHHHHHHcC-CCEEEEC
Confidence            357899999998 999999999999999999999998877654432122222   123344 5667788888 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ++...... ...+      ....++.+++ + +.||.+|+
T Consensus       239 ~~~p~~~t-~~li------~~~~l~~mk~-g-~~iV~va~  269 (377)
T 2vhw_A          239 VLVPGAKA-PKLV------SNSLVAHMKP-G-AVLVDIAI  269 (377)
T ss_dssp             CCCTTSCC-CCCB------CHHHHTTSCT-T-CEEEEGGG
T ss_pred             CCcCCCCC-ccee------cHHHHhcCCC-C-cEEEEEec
Confidence            87543211 1111      1223333332 2 57888885

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.72  E-value=7e-06  Score=67.35  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=50.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      |+|+|+||+|.+|+++++.|++.|++|++.+|++++.+++.......+.  ..|+.  ..++.+.+.+ +|+||++..
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~-~D~Vi~~~~   73 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAG--DASIT--GMKNEDAAEA-CDIAVLTIP   73 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHS--SCCEE--EEEHHHHHHH-CSEEEECSC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccc--cCCCC--hhhHHHHHhc-CCEEEEeCC
Confidence            4799999999999999999999999999999987765543321000000  01121  1234556677 999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.72  E-value=9.1e-06  Score=62.46  Aligned_cols=71  Identities=18%  Similarity=0.310  Sum_probs=53.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +++|+|.|+ |.+|+.+++.|.+.|++|++.+|++++.+++.....  ....  +.    +.+.+.+.+ .|+||.+.+.
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~--~~~~--~~----~~~~~~~~~-~Divi~at~~   90 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE--YEYV--LI----NDIDSLIKN-NDVIITATSS   90 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT--CEEE--EC----SCHHHHHHT-CSEEEECSCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC--CceE--ee----cCHHHHhcC-CCEEEEeCCC
Confidence            789999997 999999999999999999998999887665443222  2211  22    235666778 9999999864


Q ss_pred             C
Q 022216          146 Q  146 (301)
Q Consensus       146 ~  146 (301)
                      .
T Consensus        91 ~   91 (144)
T 3oj0_A           91 K   91 (144)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.71  E-value=5.3e-05  Score=65.64  Aligned_cols=96  Identities=20%  Similarity=0.201  Sum_probs=63.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+++|||+|++|++|..+++.+...|++|+++++++++.+.... .+  ...+ .|..+ .+.+.+.+++ +|+||+ +|
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~g--a~~~-~~~~~-~~~~~~~~~~-~d~vid-~g  197 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-LG--AEEA-ATYAE-VPERAKAWGG-LDLVLE-VR  197 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-TT--CSEE-EEGGG-HHHHHHHTTS-EEEEEE-CS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC--CCEE-EECCc-chhHHHHhcC-ceEEEE-CC
Confidence            47899999999999999999999999999999998777655432 22  2211 24332 1345555567 999999 87


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ..              .....+++++..  +++|.++..
T Consensus       198 ~~--------------~~~~~~~~l~~~--G~~v~~g~~  220 (302)
T 1iz0_A          198 GK--------------EVEESLGLLAHG--GRLVYIGAA  220 (302)
T ss_dssp             CT--------------THHHHHTTEEEE--EEEEEC---
T ss_pred             HH--------------HHHHHHHhhccC--CEEEEEeCC
Confidence            41              023334444433  588887765

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=97.70  E-value=2.1e-05  Score=61.53  Aligned_cols=70  Identities=9%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             chHHHHHHHHHHHCCCeEEEEEeCCchhh------hccccCCCCeEEEEccCCCC-hHhHHHHhc------CCCCEEEEc
Q 022216           76 GSSGKRIVEQLLAKGFAVKAGVRDLDKAK------TTLSKDNPSLQIVKADVTEG-SAKLSEAIG------DDSEAVVCA  142 (301)
Q Consensus        76 G~iG~~~~~~l~~~G~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~------~~~d~Vi~~  142 (301)
                      |.++.++++.|++.|++|++..|+.....      +.....+..+..+.+|++++ .+.+.+.+.      ++ |++|||
T Consensus        26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVnn  104 (157)
T 3gxh_A           26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVHC  104 (157)
T ss_dssp             BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEEC
T ss_pred             CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEEC
Confidence            56889999999999999998877654332      12222455677888999993 155555443      24 999999


Q ss_pred             cCCC
Q 022216          143 TGFQ  146 (301)
Q Consensus       143 Ag~~  146 (301)
                      ||..
T Consensus       105 Agg~  108 (157)
T 3gxh_A          105 LANY  108 (157)
T ss_dssp             SBSH
T ss_pred             CCCC
Confidence            9853

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.69  E-value=0.00016  Score=62.61  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=32.9

Q ss_pred             cccCCe-EEEE-cCC-----------------chHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           63 SVKQKK-IFVA-GAT-----------------GSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        63 ~~~~~~-vlVt-Gat-----------------G~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .+.|++ |||| |+|                 |-.|.++|++++++|++|+++.+..+
T Consensus        33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s   90 (313)
T 1p9o_A           33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS   90 (313)
T ss_dssp             HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred             hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            356887 9999 455                 78999999999999999999988643

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.69  E-value=4.5e-05  Score=65.23  Aligned_cols=70  Identities=13%  Similarity=0.241  Sum_probs=54.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++++++|+|+ |++|++++..|++.|+ +|++..|+.++.+++..    .+..+     . .+++.+.+.+ .|+||+
T Consensus       114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~----~~~~~-----~-~~~~~~~~~~-aDiVIn  181 (277)
T 3don_A          114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSL----NINKI-----N-LSHAESHLDE-FDIIIN  181 (277)
T ss_dssp             TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS----CCEEE-----C-HHHHHHTGGG-CSEEEE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH----hcccc-----c-HhhHHHHhcC-CCEEEE
Confidence            467899999997 9999999999999998 89999999888766542    22221     2 3456666778 999999


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      +..
T Consensus       182 aTp  184 (277)
T 3don_A          182 TTP  184 (277)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            864

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.68  E-value=7.1e-05  Score=66.12  Aligned_cols=98  Identities=13%  Similarity=0.082  Sum_probs=63.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      .+++|||+||+|+||..+++.+...|++|+++ +++++.+....   .+...+. +-.+..+.+.+...+ ++|+||+|+
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~---lGa~~i~-~~~~~~~~~~~~~~~~g~D~vid~~  224 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRD---LGATPID-ASREPEDYAAEHTAGQGFDLVYDTL  224 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHH---HTSEEEE-TTSCHHHHHHHHHTTSCEEEEEESS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHH---cCCCEec-cCCCHHHHHHHHhcCCCceEEEECC
Confidence            47899999999999999999999999999988 77666554432   2233322 222212444454443 599999999


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |..              .....++.++..  +++|.++..
T Consensus       225 g~~--------------~~~~~~~~l~~~--G~iv~~g~~  248 (343)
T 3gaz_A          225 GGP--------------VLDASFSAVKRF--GHVVSCLGW  248 (343)
T ss_dssp             CTH--------------HHHHHHHHEEEE--EEEEESCCC
T ss_pred             CcH--------------HHHHHHHHHhcC--CeEEEEccc
Confidence            731              123344444433  588887654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.68  E-value=0.00014  Score=63.69  Aligned_cols=112  Identities=15%  Similarity=0.074  Sum_probs=74.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      +|+.++|.|+|+ |.+|..++..|+..|. +|+++++++++.+....+       ......+...  +|    . +++++
T Consensus         4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t--~d----~-~a~~~   75 (324)
T 3gvi_A            4 SMARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA--ND----Y-AAIEG   75 (324)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SS----G-GGGTT
T ss_pred             CCcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe--CC----H-HHHCC
Confidence            356789999998 9999999999999998 999999988765321100       0011222110  12    1 46788


Q ss_pred             CCCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEeccc
Q 022216          135 DSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSI  183 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~  183 (301)
                       .|+||.+||....  .+....+..|..-...+++.+.+.+. ..++.+|..
T Consensus        76 -aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP  126 (324)
T 3gvi_A           76 -ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP  126 (324)
T ss_dssp             -CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             -CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence             9999999986432  23344567788888889999887764 366666653

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.65  E-value=6.6e-05  Score=66.44  Aligned_cols=95  Identities=19%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC-----C-eEEEEEeCCch---hhhccccCC--CCeEEEEccCCCChHhHHHHhc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG-----F-AVKAGVRDLDK---AKTTLSKDN--PSLQIVKADVTEGSAKLSEAIG  133 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G-----~-~V~~~~r~~~~---~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~  133 (301)
                      ++++|+|.||||.+|+.+++.|++++     . +++.+.++.+.   .....+...  ..+.+  .|+ +     .+.+.
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~--~~~-~-----~~~~~   79 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVV--EPT-E-----AAVLG   79 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBC--EEC-C-----HHHHT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeee--ccC-C-----HHHhc
Confidence            45799999999999999999999988     4 77777643321   211111000  11111  122 2     12356


Q ss_pred             CCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          134 DDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      + +|+||.|.|...              +..+++.+ +.|+ ++|-+|+..
T Consensus        80 ~-~DvVf~alg~~~--------------s~~~~~~~-~~G~-~vIDlSa~~  113 (352)
T 2nqt_A           80 G-HDAVFLALPHGH--------------SAVLAQQL-SPET-LIIDCGADF  113 (352)
T ss_dssp             T-CSEEEECCTTSC--------------CHHHHHHS-CTTS-EEEECSSTT
T ss_pred             C-CCEEEECCCCcc--------------hHHHHHHH-hCCC-EEEEECCCc
Confidence            7 999999987432              35677777 7774 888888875

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.62  E-value=0.00047  Score=59.24  Aligned_cols=102  Identities=13%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCc------------------hhhhcc---cc--CCCCeEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD------------------KAKTTL---SK--DNPSLQIVK  118 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~------------------~~~~~~---~~--~~~~~~~~~  118 (301)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++.+++++.-                  +.+...   ..  ....++.+.
T Consensus        33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~  111 (292)
T 3h8v_A           33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN  111 (292)
T ss_dssp             GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence            567889999998 9999999999999996 7887776641                  111111   00  234566666


Q ss_pred             ccCCCChHhHHHHh-----------cCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEec
Q 022216          119 ADVTEGSAKLSEAI-----------GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (301)
Q Consensus       119 ~Dl~~~~~~~~~~~-----------~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~S  181 (301)
                      .++++ .+.+.+.+           ++ +|+||.+..             |...-+.+-++|.+.++ .+|+.+
T Consensus       112 ~~l~~-~~~~~~~~~~~~~~~l~~~~~-~DlVid~~D-------------n~~~R~~in~~c~~~~~-Pli~~g  169 (292)
T 3h8v_A          112 YNITT-VENFQHFMDRISNGGLEEGKP-VDLVLSCVD-------------NFEARMTINTACNELGQ-TWMESG  169 (292)
T ss_dssp             CCTTS-HHHHHHHHHHHHHBSSSTTBC-CSEEEECCS-------------SHHHHHHHHHHHHHHTC-CEEEEE
T ss_pred             ccCCc-HHHHHHHhhhhcccccccCCC-CCEEEECCc-------------chhhhhHHHHHHHHhCC-CEEEee
Confidence            77765 45555544           46 999998752             34444567778888775 466544

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.61  E-value=0.00015  Score=63.89  Aligned_cols=93  Identities=18%  Similarity=0.229  Sum_probs=69.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      .++++|.|+ |.+|+.+++.|.+.|+ |++++++++..+ +..   .++.++.+|.+| ++.+.++ +.+ .|.||.+.+
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~---~~~~~i~gd~~~-~~~L~~a~i~~-a~~vi~~~~  186 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR---SGANFVHGDPTR-VSDLEKANVRG-ARAVIVDLE  186 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH---TTCEEEESCTTS-HHHHHHTCSTT-EEEEEECCS
T ss_pred             cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh---CCcEEEEeCCCC-HHHHHhcChhh-ccEEEEcCC
Confidence            458999997 9999999999999999 999999888776 432   678999999999 7888776 666 999998763


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCC-EEEE
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFIL  179 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~  179 (301)
                      -             -.....++..+++.+.+ ++|-
T Consensus       187 ~-------------d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          187 S-------------DSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             S-------------HHHHHHHHHHHHTTCTTSEEEE
T ss_pred             c-------------cHHHHHHHHHHHHHCCCCeEEE
Confidence            1             11234455666666654 4444

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.60  E-value=0.00027  Score=59.56  Aligned_cols=105  Identities=15%  Similarity=0.228  Sum_probs=68.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch-------------------hhhcc---cc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK-------------------AKTTL---SK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~-------------------~~~~~---~~--~~~~~~~  116 (301)
                      ..+++++|+|.|+ |++|.++++.|+..|. ++++++++.-.                   .+.+.   ..  ....++.
T Consensus        24 ~~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~  102 (251)
T 1zud_1           24 QKLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA  102 (251)
T ss_dssp             HHHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            3567899999998 8899999999999997 67777655311                   11100   00  1223445


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +..+++  .+.+.+.+++ .|+||.+..             |...-..+.+++.+.++ .+|..+...
T Consensus       103 ~~~~~~--~~~~~~~~~~-~DvVi~~~d-------------~~~~r~~l~~~~~~~~~-p~i~~~~~g  153 (251)
T 1zud_1          103 LQQRLT--GEALKDAVAR-ADVVLDCTD-------------NMATRQEINAACVALNT-PLITASAVG  153 (251)
T ss_dssp             ECSCCC--HHHHHHHHHH-CSEEEECCS-------------SHHHHHHHHHHHHHTTC-CEEEEEEEB
T ss_pred             EeccCC--HHHHHHHHhc-CCEEEECCC-------------CHHHHHHHHHHHHHhCC-CEEEEeccc
Confidence            544554  3567778888 999998753             23334566777777764 577765544

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.59  E-value=0.00013  Score=63.51  Aligned_cols=107  Identities=17%  Similarity=0.111  Sum_probs=68.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc--C-----CCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK--D-----NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~--~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      ++|.|+|+ |.+|..++..|+..|+ +|+++++++++++....+  .     .....+...  +|    . +.+++ .|+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~-~a~~~-aD~   73 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NN----Y-ADTAN-SDV   73 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC----G-GGGTT-CSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CC----H-HHHCC-CCE
Confidence            68999999 9999999999999996 888888887655432111  0     011111110  12    2 45788 999


Q ss_pred             EEEccCCCCCC--CCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          139 VVCATGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       139 Vi~~Ag~~~~~--~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ||.++|.....  +.......|......+++.+.+.+...+|.+.|
T Consensus        74 Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  119 (309)
T 1ur5_A           74 IVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  119 (309)
T ss_dssp             EEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence            99999865422  222334567777788888888776555554444

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.58  E-value=7.2e-05  Score=63.83  Aligned_cols=72  Identities=22%  Similarity=0.318  Sum_probs=51.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCC-CCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDN-PSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ++++++++|+|+ |++|++++..|++.|. +|++..|+.++.+++..... .++..+  ++.+    +.+  .+ .|+||
T Consensus       117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~--~~~~----l~~--~~-~DivI  186 (272)
T 3pwz_A          117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRIS--RYEA----LEG--QS-FDIVV  186 (272)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEE--CSGG----GTT--CC-CSEEE
T ss_pred             CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEe--eHHH----hcc--cC-CCEEE
Confidence            457899999998 8999999999999996 99999999887766543211 123332  2222    222  56 99999


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      |+..
T Consensus       187 naTp  190 (272)
T 3pwz_A          187 NATS  190 (272)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            9864

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.57  E-value=9.2e-05  Score=64.52  Aligned_cols=111  Identities=17%  Similarity=0.158  Sum_probs=73.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC--chhhhcccc-------CCCCeEEEEccCCCChHhHHHHh
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL--DKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~--~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      +++.++|.|+|+ |.+|..++..|+..|+ +|+++++++  +..+....+       ......+...  +|     .+.+
T Consensus         5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d-----~~a~   76 (315)
T 3tl2_A            5 TIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SD-----YADT   76 (315)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SC-----GGGG
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CC-----HHHh
Confidence            345689999997 9999999999999999 999999883  222211100       0011111111  11     2467


Q ss_pred             cCCCCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          133 GDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      ++ .|+||.+||....  .+....++.|..-...+.+.+.+.+. ..++.+|.
T Consensus        77 ~~-aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           77 AD-SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             TT-CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CC-CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            78 9999999996542  23344567788888889999887764 36666665

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.57  E-value=0.00013  Score=66.83  Aligned_cols=103  Identities=18%  Similarity=0.145  Sum_probs=65.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEE--ccCCCC---------------hHh
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVK--ADVTEG---------------SAK  127 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~Dl~~~---------------~~~  127 (301)
                      .+++|||+||+|+||..+++.+...|++|+++++++++.+.... .+....+-.  .|+.+.               .+.
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~-lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA-LGCDLVINRAELGITDDIADDPRRVVETGRKLAKL  298 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCCEEEecccccccccccccccccchhhhHHHHH
Confidence            47899999999999999999999999999999988777665432 222222211  122110               133


Q ss_pred             HHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          128 LSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       128 ~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +.+..+.++|+||+|+|..              .....++.++.  .+++|.+++..
T Consensus       299 v~~~~g~g~Dvvid~~G~~--------------~~~~~~~~l~~--~G~iv~~G~~~  339 (447)
T 4a0s_A          299 VVEKAGREPDIVFEHTGRV--------------TFGLSVIVARR--GGTVVTCGSSS  339 (447)
T ss_dssp             HHHHHSSCCSEEEECSCHH--------------HHHHHHHHSCT--TCEEEESCCTT
T ss_pred             HHHHhCCCceEEEECCCch--------------HHHHHHHHHhc--CCEEEEEecCC
Confidence            4444432599999999731              12233333333  26999988753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.57  E-value=0.00022  Score=62.47  Aligned_cols=110  Identities=18%  Similarity=0.153  Sum_probs=76.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      ..++|.|+|+ |.+|..++..|+..|.  +|++++++.++++....+      .......+..  .| .    +.+++ .
T Consensus        18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d-~----~~~~~-a   88 (331)
T 4aj2_A           18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KD-Y----SVTAN-S   88 (331)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SS-G----GGGTT-E
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CC-H----HHhCC-C
Confidence            4689999998 9999999999999986  899888876544331110      0111122221  12 1    24788 9


Q ss_pred             CEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEeccc
Q 022216          137 EAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSI  183 (301)
Q Consensus       137 d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~  183 (301)
                      |+||.+||...  ..+....++.|..-...+.+.+.+.+. ..++.+|..
T Consensus        89 DiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP  138 (331)
T 4aj2_A           89 KLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP  138 (331)
T ss_dssp             EEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence            99999999653  345556788999989999999988754 466666653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.57  E-value=0.0005  Score=60.37  Aligned_cols=106  Identities=12%  Similarity=0.051  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc-------C--CCCeEEEEccCCCChHhHHHHhcCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK-------D--NPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~-------~--~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      .++|.|+|| |.+|..++..|+..|+ +|++.+++++.++.....       .  ..++..     +   ..+.+++++ 
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-----t---~d~~ea~~~-   78 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-----E---YSYEAALTG-   78 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-----E---CSHHHHHTT-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-----e---CCHHHHhCC-
Confidence            478999998 9999999999999998 999989988765542110       0  111111     1   224557888 


Q ss_pred             CCEEEEccCCCCCC-------CCCCceeeehHHHHHHHHHHHHcCCC-EEEEec
Q 022216          136 SEAVVCATGFQPGW-------DLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~~-------~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~S  181 (301)
                      .|+||.++|.....       +.......|..-...+++.+.+.... .+|.+|
T Consensus        79 aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  132 (331)
T 1pzg_A           79 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  132 (331)
T ss_dssp             CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            99999999864322       22233456666677888888776544 344433

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.55  E-value=0.0001  Score=65.15  Aligned_cols=76  Identities=16%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcCCCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .+++|||+||+|.+|...++.+...|++|+++++++++.+.... .+  ...+ .|..+. .+.+.+...+++|+||+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lG--a~~v-i~~~~~~~~~~~~~~~~g~Dvv~d~~  225 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK-MG--ADIV-LNHKESLLNQFKTQGIELVDYVFCTF  225 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-HT--CSEE-ECTTSCHHHHHHHHTCCCEEEEEESS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cC--CcEE-EECCccHHHHHHHhCCCCccEEEECC
Confidence            58899999999999999999999999999999988776655432 11  1111 233321 2444444222599999998


Q ss_pred             C
Q 022216          144 G  144 (301)
Q Consensus       144 g  144 (301)
                      |
T Consensus       226 g  226 (346)
T 3fbg_A          226 N  226 (346)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.55  E-value=0.00013  Score=65.03  Aligned_cols=72  Identities=21%  Similarity=0.300  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC---chhhhccccCCCCeEEEEccCCC-ChHhHHHHhcCCCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL---DKAKTTLSKDNPSLQIVKADVTE-GSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~Vi~  141 (301)
                      +++|||+|+ |+||..+++.+...|++|+++++++   ++.+....   .+...+  | .+ ..+.+.+.-.+ +|+||+
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~---~ga~~v--~-~~~~~~~~~~~~~~-~d~vid  252 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEE---TKTNYY--N-SSNGYDKLKDSVGK-FDVIID  252 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHH---HTCEEE--E-CTTCSHHHHHHHCC-EEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHH---hCCcee--c-hHHHHHHHHHhCCC-CCEEEE
Confidence            899999999 9999999999999999999999987   66543321   233333  4 32 12344442245 999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      ++|.
T Consensus       253 ~~g~  256 (366)
T 2cdc_A          253 ATGA  256 (366)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.54  E-value=0.00022  Score=62.36  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc--C-----CCCeEEEEccCCCChHhHHHHhcCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK--D-----NPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~--~-----~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      |+.++|.|+|+ |.+|..++..|+..|. +|+++++++++.+....+  .     .....+...  .|     .+++++ 
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d-----~~a~~~-   73 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--ND-----YKDLEN-   73 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC-----GGGGTT-
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CC-----HHHHCC-
Confidence            35689999995 9999999999999987 999999988765421110  0     112222211  12     246788 


Q ss_pred             CCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      .|+||.+||....  ......+..|..-...+++.+.+.+. ..++.+|.
T Consensus        74 aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  123 (321)
T 3p7m_A           74 SDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN  123 (321)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            9999999986532  22233456788888889999888764 36666654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.53  E-value=0.0002  Score=62.33  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |+|.|+|+ |.+|..++..|+..|.  +|+++++++++.+....+       ...+..+...|  +     .+.+++ .|
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~-----~~a~~~-aD   71 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D-----YGPTED-SD   71 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S-----SGGGTT-CS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C-----HHHhCC-CC
Confidence            68999997 9999999999999886  899999988764421110       11122322111  1     246788 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      +||.+||...  ..+....++.|..-...+.+.+.+.+. ..++.+|.
T Consensus        72 vVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           72 VCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             EEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             EEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            9999999653  234445667888888899999988764 35666665

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.52  E-value=6.1e-05  Score=64.61  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=51.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCC--CCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      .+++++++|+|+ |++|++++..|++.|+ +|++..|+.++.+++.....  ..+...  ++.+    +   ..+ .|+|
T Consensus       123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~--~~~~----l---~~~-aDiI  191 (281)
T 3o8q_A          123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQ--AFEQ----L---KQS-YDVI  191 (281)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEE--EGGG----C---CSC-EEEE
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEe--eHHH----h---cCC-CCEE
Confidence            467899999998 8999999999999996 99999999877665443211  123333  2222    1   146 9999


Q ss_pred             EEccCC
Q 022216          140 VCATGF  145 (301)
Q Consensus       140 i~~Ag~  145 (301)
                      |++...
T Consensus       192 InaTp~  197 (281)
T 3o8q_A          192 INSTSA  197 (281)
T ss_dssp             EECSCC
T ss_pred             EEcCcC
Confidence            998753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.47  E-value=0.00015  Score=63.95  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=66.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++|||+|+ |++|..+++.+...|++|++++|++++.+.... ..  ... ..|..+.  .+.+.+..++ +|+||++
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lG--a~~-~~d~~~~~~~~~~~~~~~~-~d~vid~  237 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-LG--ADL-VVNPLKEDAAKFMKEKVGG-VHAAVVT  237 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TT--CSE-EECTTTSCHHHHHHHHHSS-EEEEEES
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-CC--CCE-EecCCCccHHHHHHHHhCC-CCEEEEC
Confidence            4789999999 889999999999999999999988777665432 22  221 2466541  1344444456 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +|..             ......+++++..  +++|.+++.
T Consensus       238 ~g~~-------------~~~~~~~~~l~~~--G~~v~~g~~  263 (339)
T 1rjw_A          238 AVSK-------------PAFQSAYNSIRRG--GACVLVGLP  263 (339)
T ss_dssp             SCCH-------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred             CCCH-------------HHHHHHHHHhhcC--CEEEEeccc
Confidence            9731             1233344444443  589888764

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.45  E-value=0.00066  Score=59.31  Aligned_cols=108  Identities=19%  Similarity=0.070  Sum_probs=74.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc------CCCCeEEE-EccCCCChHhHHHHhcCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK------DNPSLQIV-KADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~------~~~~~~~~-~~Dl~~~~~~~~~~~~~~~  136 (301)
                      .++|.|+|+ |.+|..++..|+..|.  +|+++++++++.+....+      ......+. ..|+.        .+++ .
T Consensus        21 ~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--------~~~d-a   90 (330)
T 3ldh_A           21 YNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--------VSAG-S   90 (330)
T ss_dssp             CCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--------SCSS-C
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--------HhCC-C
Confidence            579999999 9999999999999986  899988876544321100      01111222 22332        2677 9


Q ss_pred             CEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEeccc
Q 022216          137 EAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSI  183 (301)
Q Consensus       137 d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~  183 (301)
                      |+||.+||...  ..+....+..|..-...+++.+.+.+. ..++.+|..
T Consensus        91 DiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP  140 (330)
T 3ldh_A           91 KLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL  140 (330)
T ss_dssp             SEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence            99999999653  345556778888888889999888754 456666653

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.45  E-value=0.00026  Score=61.06  Aligned_cols=107  Identities=13%  Similarity=0.048  Sum_probs=73.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcc----c---cCCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTL----S---KDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~----~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |+|.|+|+ |.+|..++..|+..|.  +|++.++++++++...    .   .......+..   ++  +  .+++++ .|
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~--d--~~a~~~-aD   71 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GA--D--YSLLKG-SE   71 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ES--C--GGGGTT-CS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eC--C--HHHhCC-CC
Confidence            58999999 9999999999999987  8999999886653110    0   0111222221   11  1  446788 99


Q ss_pred             EEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      +||.+||....  .+....+..|..-...+++.+.+.+. ..++.+|.
T Consensus        72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            99999996532  23334567788888888999888764 46666665

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.45  E-value=0.00014  Score=66.98  Aligned_cols=98  Identities=20%  Similarity=0.261  Sum_probs=72.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      .|+|+|.|+ |-+|+++++.|.+.|++|++++++++..+.+..  ...+..+.+|-++ ++.+.++ +.+ .|.+|-+.+
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~--~~~~~~i~Gd~~~-~~~L~~Agi~~-ad~~ia~t~   77 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQD--KYDLRVVNGHASH-PDVLHEAGAQD-ADMLVAVTN   77 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHH--HSSCEEEESCTTC-HHHHHHHTTTT-CSEEEECCS
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--hcCcEEEEEcCCC-HHHHHhcCCCc-CCEEEEEcC
Confidence            589999998 999999999999999999999999887766542  2367899999999 7888776 345 999986442


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEec
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILIS  181 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~S  181 (301)
                         . |     ++|+.    .+..|++. +..++|---
T Consensus        78 ---~-D-----e~Nl~----~~~~Ak~~~~~~~~iar~  102 (461)
T 4g65_A           78 ---T-D-----ETNMA----ACQVAFTLFNTPNRIARI  102 (461)
T ss_dssp             ---C-H-----HHHHH----HHHHHHHHHCCSSEEEEC
T ss_pred             ---C-h-----HHHHH----HHHHHHHhcCCccceeEe
Confidence               1 1     33443    45556654 555555433

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.44  E-value=0.00043  Score=60.17  Aligned_cols=109  Identities=18%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-C--CeEEEEEeCCchhh----hccccCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-G--FAVKAGVRDLDKAK----TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G--~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      |+|.|+||+|.+|..++..|... +  .+++++++++ +.+    ++.. ......+... .++   ...+.+++ .|+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~-~~~~~~v~~~-~~~---~~~~~~~~-aDiv   73 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSH-IPTAVKIKGF-SGE---DATPALEG-ADVV   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHT-SCSSEEEEEE-CSS---CCHHHHTT-CSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhC-CCCCceEEEe-cCC---CcHHHhCC-CCEE
Confidence            58999999999999999999875 5  5788888776 221    1111 1112222111 111   13567888 9999


Q ss_pred             EEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          140 VCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       140 i~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      |.+||...  ..+....++.|..-...+.+++.+.+. ..++.+|.
T Consensus        74 ii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN  119 (312)
T 3hhp_A           74 LISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (312)
T ss_dssp             EECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            99999653  234445678899889999999987754 36666655

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.43  E-value=6.5e-05  Score=65.70  Aligned_cols=105  Identities=12%  Similarity=0.071  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc---C---CCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK---D---NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~---~---~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      .++|.|+|+ |++|..++-.|+..|.  +|+++++++++++....+   .   ..++.+. .  .+     .+++++ .|
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~-----~~a~~~-aD   76 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GD-----YSDVKD-CD   76 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C-----GGGGTT-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CC-----HHHhCC-CC
Confidence            578999998 9999999999999987  899999887654321111   1   1122222 1  12     345788 99


Q ss_pred             EEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEe
Q 022216          138 AVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILI  180 (301)
Q Consensus       138 ~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~  180 (301)
                      +||.++|....  ......+..|+.-...+++.+.+.+.+ .+|.+
T Consensus        77 vVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  122 (318)
T 1y6j_A           77 VIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV  122 (318)
T ss_dssp             EEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred             EEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence            99999986542  222234567777788888888876543 45554

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.39  E-value=0.00052  Score=61.26  Aligned_cols=74  Identities=15%  Similarity=0.109  Sum_probs=49.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh--cCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI--GDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~~~d~Vi~~  142 (301)
                      .+++|||+||+|+||..+++.+...|++|++++ +.++.+.... .+  ... ..|..+ .+...+..  .+ +|+||+|
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~-lG--a~~-v~~~~~-~~~~~~~~~~~g-~D~vid~  255 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK-LG--ADD-VIDYKS-GSVEEQLKSLKP-FDFILDN  255 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH-TT--CSE-EEETTS-SCHHHHHHTSCC-BSEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH-cC--CCE-EEECCc-hHHHHHHhhcCC-CCEEEEC
Confidence            478999999999999999999999999999877 4444443321 22  221 125444 22222222  45 9999999


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      +|.
T Consensus       256 ~g~  258 (375)
T 2vn8_A          256 VGG  258 (375)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            984

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.38  E-value=6.1e-05  Score=66.36  Aligned_cols=114  Identities=14%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCCch--hh----hcccc-CCCCeEEEEccCCCChHhH
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDK--AK----TTLSK-DNPSLQIVKADVTEGSAKL  128 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~~~--~~----~~~~~-~~~~~~~~~~Dl~~~~~~~  128 (301)
                      +++.-+|.|+||+|+||+.++-.|+....       ++.+++..+..  ++    ++... .......+.   ++   ..
T Consensus        21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~---~~---~~   94 (345)
T 4h7p_A           21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV---TA---DP   94 (345)
T ss_dssp             -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE---ES---CH
T ss_pred             CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE---cC---Ch
Confidence            44567999999999999999998887542       67777765431  11    11100 111112222   12   24


Q ss_pred             HHHhcCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcC-CC-EEEEeccc
Q 022216          129 SEAIGDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRG-VN-RFILISSI  183 (301)
Q Consensus       129 ~~~~~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~-~~-~iV~~SS~  183 (301)
                      .+++++ .|+||-+||...  ..+....++.|..-...+.+++.+.. .. +++.+|..
T Consensus        95 ~~a~~~-advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP  152 (345)
T 4h7p_A           95 RVAFDG-VAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP  152 (345)
T ss_dssp             HHHTTT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             HHHhCC-CCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence            667899 999999999654  34455667899998999999987753 22 55666653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.37  E-value=0.00027  Score=64.95  Aligned_cols=100  Identities=21%  Similarity=0.185  Sum_probs=64.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC------------h-------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG------------S-------  125 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~------------~-------  125 (301)
                      .+.+|||+||+|+||...++.+...|++|+++++++++.+.+.. .+... +  .|..+.            .       
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~-lGa~~-v--i~~~~~d~~~~~~~~~~~~~~~~~~~  303 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA-MGAEA-I--IDRNAEGYRFWKDENTQDPKEWKRFG  303 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCCE-E--EETTTTTCCSEEETTEECHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh-hCCcE-E--EecCcCcccccccccccchHHHHHHH
Confidence            47899999999999999999999999999999987776654432 11111 1  122210            1       


Q ss_pred             HhHHHHhcC-CCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          126 AKLSEAIGD-DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       126 ~~~~~~~~~-~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +.+.+...+ ++|+||+++|..              .....++.++..  +++|.+++..
T Consensus       304 ~~i~~~t~g~g~Dvvid~~G~~--------------~~~~~~~~l~~~--G~iv~~G~~~  347 (456)
T 3krt_A          304 KRIRELTGGEDIDIVFEHPGRE--------------TFGASVFVTRKG--GTITTCASTS  347 (456)
T ss_dssp             HHHHHHHTSCCEEEEEECSCHH--------------HHHHHHHHEEEE--EEEEESCCTT
T ss_pred             HHHHHHhCCCCCcEEEEcCCch--------------hHHHHHHHhhCC--cEEEEEecCC
Confidence            445555543 599999998731              122333433333  5888887653

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.36  E-value=0.00019  Score=62.82  Aligned_cols=74  Identities=20%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcCCCCEEEEccCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +|||+|++|++|...++.+...|++|+++++++++.+.... .+  ...+ .|..+. .+.+.+...+++|+||+|+|.
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-lG--a~~~-i~~~~~~~~~~~~~~~~~~d~vid~~g~  226 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-LG--AKEV-LAREDVMAERIRPLDKQRWAAAVDPVGG  226 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-TT--CSEE-EECC---------CCSCCEEEEEECSTT
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-cC--CcEE-EecCCcHHHHHHHhcCCcccEEEECCcH
Confidence            89999999999999999999999999999998777655432 22  2211 244441 111222212249999999974

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.34  E-value=0.00027  Score=64.78  Aligned_cols=41  Identities=29%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~  104 (301)
                      .+.+|+|+|||+ |+||+.+++.|.+.|++|++.++++....
T Consensus       262 ~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~~~~a~  302 (488)
T 3ond_A          262 MIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEIDPICAL  302 (488)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            468999999998 59999999999999999999888765543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.33  E-value=0.0005  Score=58.85  Aligned_cols=69  Identities=16%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ..+++++++|+|+ |+.|++++..|++.|. +|++..|+.++.+++..    .+..+.      -+.+.+ + + .|+||
T Consensus       118 ~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~----~~~~~~------~~~l~~-l-~-~DivI  183 (282)
T 3fbt_A          118 VEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG----EFKVIS------YDELSN-L-K-GDVII  183 (282)
T ss_dssp             CCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT----TSEEEE------HHHHTT-C-C-CSEEE
T ss_pred             CCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hcCccc------HHHHHh-c-c-CCEEE
Confidence            3467899999997 8999999999999998 89999999888776653    222221      223334 4 6 99999


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      |+..
T Consensus       184 naTp  187 (282)
T 3fbt_A          184 NCTP  187 (282)
T ss_dssp             ECSS
T ss_pred             ECCc
Confidence            9874

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.32  E-value=0.00041  Score=59.69  Aligned_cols=107  Identities=14%  Similarity=0.086  Sum_probs=72.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |||.|+|+ |+||+.++-.|+.+|.  ++++++.+++..+-...+       ..........+  |     .+.+++ .|
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d-----~~~~~~-aD   71 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--D-----YSLLKG-SE   71 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--C-----GGGGTT-CS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--C-----HHHhCC-CC
Confidence            68999996 9999999999988873  788888776443211100       11122222211  1     134678 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      +||..||...  ..+....++.|..-...+.+++.+.+.+ .++.+|.
T Consensus        72 vVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             EEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             EEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence            9999999654  3455567788999999999999888654 4555554

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.32  E-value=0.00057  Score=60.58  Aligned_cols=75  Identities=19%  Similarity=0.104  Sum_probs=55.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|||+|+ |++|...++.+...|++|+++++++++.+....+.+.. .+  .|..+ .+.+.+...+ +|+||.++|
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~-~v--i~~~~-~~~~~~~~~g-~D~vid~~g  253 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGAD-DY--VIGSD-QAKMSELADS-LDYVIDTVP  253 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCS-CE--EETTC-HHHHHHSTTT-EEEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCc-ee--ecccc-HHHHHHhcCC-CCEEEECCC
Confidence            5789999996 99999999988888999999999887765543112221 11  34455 5566665566 999999998


Q ss_pred             C
Q 022216          145 F  145 (301)
Q Consensus       145 ~  145 (301)
                      .
T Consensus       254 ~  254 (357)
T 2cf5_A          254 V  254 (357)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.31  E-value=0.0018  Score=57.24  Aligned_cols=103  Identities=14%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcc----------------------c--cCCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL----------------------S--KDNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~----------------------~--~~~~~~~~  116 (301)
                      ..+++++|+|.|+ |++|.++++.|+..|. ++++++++.-....+.                      .  .+...++.
T Consensus       114 ~~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~  192 (353)
T 3h5n_A          114 DKLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE  192 (353)
T ss_dssp             HHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEE
Confidence            3567899999998 9999999999999996 7888887642211110                      0  02345677


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehH-HHHHHHHHHHHcCCCEEEEecc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNF-GTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~-g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +..++++ ...+.+ +.+ .|+||.+..             |.. .-..+-++|.+.++ .+|+.+.
T Consensus       193 ~~~~i~~-~~~~~~-~~~-~DlVvd~~D-------------n~~~~r~~ln~~c~~~~~-p~i~~~~  242 (353)
T 3h5n_A          193 IALNIND-YTDLHK-VPE-ADIWVVSAD-------------HPFNLINWVNKYCVRANQ-PYINAGY  242 (353)
T ss_dssp             EECCCCS-GGGGGG-SCC-CSEEEECCC-------------CSTTHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             eecccCc-hhhhhH-hcc-CCEEEEecC-------------ChHHHHHHHHHHHHHhCC-CEEEEEE
Confidence            7777776 444666 888 999999762             112 23456677888875 5666543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.29  E-value=0.00052  Score=60.97  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=65.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCCchhhhccccCCCCeEEEEccCCCChH----hHHHHhcC-CCCE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA----KLSEAIGD-DSEA  138 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~~~-~~d~  138 (301)
                      .+++|||+|+ |++|...++.+...|++ |+++++++++.+..... ...+..+..|-.+ .+    .+.+..++ ++|+
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~-~~~~~~~v~~~t~g~g~Dv  255 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLS-AEESAKKIVESFGGIEPAV  255 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCC-HHHHHHHHHHHTSSCCCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccc-hHHHHHHHHHHhCCCCCCE
Confidence            5789999998 99999999988889997 88888887776654432 2344444444333 33    33344333 5999


Q ss_pred             EEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       139 Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ||.++|..             ......++.++..  +++|.++..
T Consensus       256 vid~~g~~-------------~~~~~~~~~l~~~--G~iv~~G~~  285 (363)
T 3m6i_A          256 ALECTGVE-------------SSIAAAIWAVKFG--GKVFVIGVG  285 (363)
T ss_dssp             EEECSCCH-------------HHHHHHHHHSCTT--CEEEECCCC
T ss_pred             EEECCCCh-------------HHHHHHHHHhcCC--CEEEEEccC
Confidence            99998732             1123334444333  689988653

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.28  E-value=0.00025  Score=62.69  Aligned_cols=99  Identities=13%  Similarity=0.081  Sum_probs=64.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi  140 (301)
                      .+++|||+|+ |++|..+++.+...|+ +|+++++++++.+.... .  +... ..|..++  .+.+.+...+ ++|+||
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-~--Ga~~-~~~~~~~~~~~~v~~~~~g~g~D~vi  241 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK-V--GADY-VINPFEEDVVKEVMDITDGNGVDVFL  241 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH-H--TCSE-EECTTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h--CCCE-EECCCCcCHHHHHHHHcCCCCCCEEE
Confidence            5789999999 9999999999999999 99999988776554432 1  1221 1344431  1344444432 499999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +++|..             ......++.++..  +++|.+++.
T Consensus       242 d~~g~~-------------~~~~~~~~~l~~~--G~iv~~g~~  269 (348)
T 2d8a_A          242 EFSGAP-------------KALEQGLQAVTPA--GRVSLLGLY  269 (348)
T ss_dssp             ECSCCH-------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred             ECCCCH-------------HHHHHHHHHHhcC--CEEEEEccC
Confidence            999731             1223344444443  589988774

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.28  E-value=0.00064  Score=58.95  Aligned_cols=106  Identities=17%  Similarity=0.196  Sum_probs=66.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc----C--CCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK----D--NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~----~--~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      |+|.|+|+ |.+|..++..|+..|+  +|+++++++++++....+    .  .....+..   .+     .+.+++ .|+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~-----~~a~~~-aDv   70 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GG-----HSELAD-AQV   70 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---EC-----GGGGTT-CSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CC-----HHHhCC-CCE
Confidence            57999998 9999999999999998  999999887644321110    0  01222221   12     235778 999


Q ss_pred             EEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          139 VVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       139 Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      ||.+++...  .......+..|+.-...+++.+.+.+.. .+|.+|.
T Consensus        71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN  117 (304)
T 2v6b_A           71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSN  117 (304)
T ss_dssp             EEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred             EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            999997543  2334455677888888888888776543 4555443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.27  E-value=0.00052  Score=61.03  Aligned_cols=101  Identities=15%  Similarity=0.155  Sum_probs=65.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      .+++|||+| +|.+|...++.+...|++|+++++++++.+.... .+.. .++.-+-.+..+.+.+...+ ++|+||+|+
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-~vi~~~~~~~~~~v~~~~~g~g~D~vid~~  265 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA-LGAD-HGINRLEEDWVERVYALTGDRGADHILEIA  265 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTCS-EEEETTTSCHHHHHHHHHTTCCEEEEEEET
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH-cCCC-EEEcCCcccHHHHHHHHhCCCCceEEEECC
Confidence            478999999 8999999999999999999999988777665432 2221 12221111212455555543 599999999


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |..              .....++.++..  +++|.++...
T Consensus       266 g~~--------------~~~~~~~~l~~~--G~iv~~G~~~  290 (363)
T 3uog_A          266 GGA--------------GLGQSLKAVAPD--GRISVIGVLE  290 (363)
T ss_dssp             TSS--------------CHHHHHHHEEEE--EEEEEECCCS
T ss_pred             ChH--------------HHHHHHHHhhcC--CEEEEEecCC
Confidence            821              023344444443  5899887653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.27  E-value=0.00027  Score=63.91  Aligned_cols=72  Identities=26%  Similarity=0.388  Sum_probs=53.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +.+++|+|.|+ |.+|..+++.|...|. +|++.+|++++.+++....  +...     .+ .+.+.+.+.+ .|+||.+
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~--g~~~-----~~-~~~l~~~l~~-aDvVi~a  234 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL--GGEA-----VR-FDELVDHLAR-SDVVVSA  234 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH--TCEE-----CC-GGGHHHHHHT-CSEEEEC
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc--CCce-----ec-HHhHHHHhcC-CCEEEEc
Confidence            57999999998 9999999999999998 8999999877654433211  1221     12 2346666778 9999999


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      .+.
T Consensus       235 t~~  237 (404)
T 1gpj_A          235 TAA  237 (404)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            763

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.27  E-value=0.0006  Score=55.97  Aligned_cols=65  Identities=22%  Similarity=0.376  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +++|.|+| +|.+|..+++.|++.|++|++.+|++++.+++..   .++...     +    ..+.+.+ +|+||.+..
T Consensus        28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~---~g~~~~-----~----~~~~~~~-~DvVi~av~   92 (215)
T 2vns_A           28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTARLFP---SAAQVT-----F----QEEAVSS-PEVIFVAVF   92 (215)
T ss_dssp             -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSB---TTSEEE-----E----HHHHTTS-CSEEEECSC
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCcee-----c----HHHHHhC-CCEEEECCC
Confidence            57899999 6999999999999999999999998877665543   233321     2    3456677 999999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=97.26  E-value=0.00096  Score=59.47  Aligned_cols=101  Identities=11%  Similarity=0.116  Sum_probs=63.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.+|||+||+|.+|...++.+...|++|+++. ++++.+.... .+.. .+  .|..+.  .+.+.+...+++|+||.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~-lGa~-~v--i~~~~~~~~~~v~~~t~g~~d~v~d  237 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS-RGAE-EV--FDYRAPNLAQTIRTYTKNNLRYALD  237 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH-TTCS-EE--EETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH-cCCc-EE--EECCCchHHHHHHHHccCCccEEEE
Confidence            3578999999999999999999999999999876 5555543332 2221 12  244431  24455554445999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ++|..             ......++++.+.+ +++|.++..
T Consensus       238 ~~g~~-------------~~~~~~~~~l~~~~-G~iv~~g~~  265 (371)
T 3gqv_A          238 CITNV-------------ESTTFCFAAIGRAG-GHYVSLNPF  265 (371)
T ss_dssp             SSCSH-------------HHHHHHHHHSCTTC-EEEEESSCC
T ss_pred             CCCch-------------HHHHHHHHHhhcCC-CEEEEEecC
Confidence            98742             11223334432222 689988754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.26  E-value=0.0009  Score=59.14  Aligned_cols=98  Identities=18%  Similarity=0.165  Sum_probs=64.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCC---CChHhHHHHhc----CCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT---EGSAKLSEAIG----DDSE  137 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~---~~~~~~~~~~~----~~~d  137 (301)
                      .+++|||+|+ |++|...++.+...|++|+++++++++.+.... .... .++  |..   +..+.+.+...    +++|
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-~~~--~~~~~~~~~~~i~~~~~~~~g~g~D  242 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-CGAD-VTL--VVDPAKEEESSIIERIRSAIGDLPN  242 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCS-EEE--ECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hCCC-EEE--cCcccccHHHHHHHHhccccCCCCC
Confidence            5789999997 999999999888899999888888776654432 2222 222  333   21355666553    2499


Q ss_pred             EEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +||+++|..             ......+++++..  +++|.++.
T Consensus       243 ~vid~~g~~-------------~~~~~~~~~l~~~--G~iv~~G~  272 (352)
T 1e3j_A          243 VTIDCSGNE-------------KCITIGINITRTG--GTLMLVGM  272 (352)
T ss_dssp             EEEECSCCH-------------HHHHHHHHHSCTT--CEEEECSC
T ss_pred             EEEECCCCH-------------HHHHHHHHHHhcC--CEEEEEec
Confidence            999998732             1123334444433  58998765

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.25  E-value=0.00092  Score=58.43  Aligned_cols=108  Identities=13%  Similarity=0.161  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      .++|.|+|| |.+|..++..|+..|+ +|++.++++++++.....       ......+...  +|    . +++++ .|
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d----~-~al~~-aD   74 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NT----Y-DDLAG-AD   74 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CC----G-GGGTT-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC--CC----H-HHhCC-CC
Confidence            468999998 9999999999999998 988888887765431110       0111111110  22    3 46788 99


Q ss_pred             EEEEccCCCCCCC-------CCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          138 AVVCATGFQPGWD-------LFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~~~~-------~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      +||.++|.....+       .......|+.-...+++.+.+.... .+|++|.
T Consensus        75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  127 (322)
T 1t2d_A           75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  127 (322)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9999998643221       2233445666677777777766533 4555544

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.24  E-value=0.00065  Score=59.97  Aligned_cols=96  Identities=14%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEE-EEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQI-VKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +++|.|.||+|.+|+.+++.|.+++. +++.+.++.+...+... ....+.- ....+.+ .+   + +.+ +|+||.|+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~-~~~~~~g~~~~~~~~-~~---~-~~~-vDvV~~a~   76 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHF-VHPNLRGRTNLKFVP-PE---K-LEP-ADILVLAL   76 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGG-TCGGGTTTCCCBCBC-GG---G-CCC-CSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHH-hCchhcCcccccccc-hh---H-hcC-CCEEEEcC
Confidence            47899999999999999999998764 77777654332211110 0010000 0111223 22   2 467 99999998


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |..              ....+++.+.+.|+ ++|-.|+.
T Consensus        77 g~~--------------~s~~~a~~~~~aG~-~VId~Sa~  101 (345)
T 2ozp_A           77 PHG--------------VFAREFDRYSALAP-VLVDLSAD  101 (345)
T ss_dssp             CTT--------------HHHHTHHHHHTTCS-EEEECSST
T ss_pred             CcH--------------HHHHHHHHHHHCCC-EEEEcCcc
Confidence            643              14566777777775 78888875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.23  E-value=4.9e-05  Score=66.42  Aligned_cols=109  Identities=14%  Similarity=0.127  Sum_probs=70.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhccc-------cCCCCeEEEEccCCCChHhHHHHhcC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLS-------KDNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      ++.++|.|+|+ |.+|..++..|+..|  .+|+++++++++++....       .....+.+.. |  +     .+++++
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~-----~~a~~~   74 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E-----YSDCHD   74 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C-----GGGGTT
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C-----HHHhCC
Confidence            34679999999 999999999999888  488888877654432110       0112333332 1  2     345788


Q ss_pred             CCCEEEEccCCCCCC--CCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          135 DSEAVVCATGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~--~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                       .|+||.++|.....  +....+..|..-...+++.+.+.+.+ .+|.+|.
T Consensus        75 -aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  124 (317)
T 3d0o_A           75 -ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN  124 (317)
T ss_dssp             -CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             -CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence             99999999865422  22234566777778888888877543 5555443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.21  E-value=0.00057  Score=60.94  Aligned_cols=74  Identities=15%  Similarity=0.104  Sum_probs=53.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|||+|+ |.+|...++.+...|++|+++++++++.+.... .+  ... ..|..+ .+.+.+...+ +|+||.++|
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-lG--a~~-vi~~~~-~~~~~~~~~g-~Dvvid~~g  266 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LG--ADE-VVNSRN-ADEMAAHLKS-FDFILNTVA  266 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HT--CSE-EEETTC-HHHHHTTTTC-EEEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC--CcE-Eecccc-HHHHHHhhcC-CCEEEECCC
Confidence            4789999998 899999999888899999999988877665432 11  211 135555 4444444456 999999997


Q ss_pred             C
Q 022216          145 F  145 (301)
Q Consensus       145 ~  145 (301)
                      .
T Consensus       267 ~  267 (369)
T 1uuf_A          267 A  267 (369)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.20  E-value=0.00061  Score=57.83  Aligned_cols=65  Identities=17%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      +++++|.|+ |+.|++++..|++.|.+|++..|+.++.+++. ...  +...  ++.+    +    .+ .|+|||+...
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~--~~~~--~~~~----l----~~-~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLG--CDCF--MEPP----K----SA-FDLIINATSA  182 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHT--CEEE--SSCC----S----SC-CSEEEECCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCC--CeEe--cHHH----h----cc-CCEEEEcccC
Confidence            789999997 99999999999999999999999998877664 222  2222  2333    1    26 9999998654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.20  E-value=0.00013  Score=63.84  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      .++|.|+|+ |.+|..++..|+..+.  +++++++++++++....+      ...++.+.. |  +     .+++++ .|
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~-----~~a~~~-aD   74 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E-----YSDCKD-AD   74 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C-----GGGGTT-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C-----HHHhCC-CC
Confidence            479999999 9999999999998875  899888876554421110      112333332 1  1     345788 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      +||.++|...  ..+....+..|+.-...+++.+++.+. ..+|.+|-
T Consensus        75 vVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  122 (318)
T 1ez4_A           75 LVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (318)
T ss_dssp             EEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            9999998643  233445667888888889999888764 45666644

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.19  E-value=0.0012  Score=55.64  Aligned_cols=68  Identities=24%  Similarity=0.396  Sum_probs=52.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++ +++|.|+ |+.|++++..|++.|. +|++..|++++.+++..    .+...  +    .+++.+.+.+ .|+||++
T Consensus       107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~----~~~~~--~----~~~~~~~~~~-aDiVIna  173 (253)
T 3u62_A          107 VKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDF----PVKIF--S----LDQLDEVVKK-AKSLFNT  173 (253)
T ss_dssp             CCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS----SCEEE--E----GGGHHHHHHT-CSEEEEC
T ss_pred             CCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----HcccC--C----HHHHHhhhcC-CCEEEEC
Confidence            467 9999997 9999999999999998 89999999888776653    12111  1    2345667778 9999998


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      ..
T Consensus       174 tp  175 (253)
T 3u62_A          174 TS  175 (253)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.19  E-value=0.00098  Score=57.43  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=53.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+++|+|.|+ |.||+.+++.|...|.+|++.+|++++.+....   .++..+     + .+.+.+.+.+ .|+|+.+
T Consensus       152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~---~g~~~~-----~-~~~l~~~l~~-aDvVi~~  220 (293)
T 3d4o_A          152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLARIAE---MGMEPF-----H-ISKAAQELRD-VDVCINT  220 (293)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TTSEEE-----E-GGGHHHHTTT-CSEEEEC
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH---CCCeec-----C-hhhHHHHhcC-CCEEEEC
Confidence            467899999996 999999999999999999999998766443321   223322     1 2346777888 9999998


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      ..
T Consensus       221 ~p  222 (293)
T 3d4o_A          221 IP  222 (293)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.19  E-value=0.00073  Score=59.49  Aligned_cols=98  Identities=12%  Similarity=0.059  Sum_probs=64.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~Vi~  141 (301)
                      .+.+|||+|+ |++|..+++.+...|+ +|+++++++++.+.... .   ... ..|..+.  .+.+.+...+++|+||+
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l---a~~-v~~~~~~~~~~~~~~~~~~g~D~vid  237 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y---ADR-LVNPLEEDLLEVVRRVTGSGVEVLLE  237 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T---CSE-EECTTTSCHHHHHHHHHSSCEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---HHh-ccCcCccCHHHHHHHhcCCCCCEEEE
Confidence            5789999999 9999999999988999 99999988776654432 1   211 2344431  13343333224999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ++|..             ......++.++..  +++|.++..
T Consensus       238 ~~g~~-------------~~~~~~~~~l~~~--G~iv~~g~~  264 (343)
T 2dq4_A          238 FSGNE-------------AAIHQGLMALIPG--GEARILGIP  264 (343)
T ss_dssp             CSCCH-------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred             CCCCH-------------HHHHHHHHHHhcC--CEEEEEecC
Confidence            99731             1223344444443  588888763

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.18  E-value=0.0012  Score=57.05  Aligned_cols=72  Identities=21%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+++|+|.|+ |.+|+.+++.|...|.+|++.+|++++.+....   .++..+.      .+++.+.+.+ .|+||.+
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~---~g~~~~~------~~~l~~~l~~-aDvVi~~  222 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARITE---MGLVPFH------TDELKEHVKD-IDICINT  222 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TTCEEEE------GGGHHHHSTT-CSEEEEC
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---CCCeEEc------hhhHHHHhhC-CCEEEEC
Confidence            467899999997 999999999999999999999998766543322   1233221      2346777888 9999998


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      ...
T Consensus       223 ~p~  225 (300)
T 2rir_A          223 IPS  225 (300)
T ss_dssp             CSS
T ss_pred             CCh
Confidence            753

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.16  E-value=0.00037  Score=61.87  Aligned_cols=74  Identities=16%  Similarity=0.085  Sum_probs=52.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-cCCCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-GDDSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~~~d~Vi~~A  143 (301)
                      .+++|||+|+ |.+|...++.+...|++|+++++++++.+.... .+  ...+ .|..+ ...+.+.+ ++ +|+||.++
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-lG--a~~v-~~~~~-~~~~~~~~~~~-~D~vid~~  251 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MG--ADHY-IATLE-EGDWGEKYFDT-FDLIVVCA  251 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HT--CSEE-EEGGG-TSCHHHHSCSC-EEEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cC--CCEE-EcCcC-chHHHHHhhcC-CCEEEECC
Confidence            4789999999 999999999888889999999998877665432 11  2111 24433 20233333 45 99999999


Q ss_pred             CC
Q 022216          144 GF  145 (301)
Q Consensus       144 g~  145 (301)
                      |.
T Consensus       252 g~  253 (360)
T 1piw_A          252 SS  253 (360)
T ss_dssp             SC
T ss_pred             CC
Confidence            85

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.16  E-value=0.001  Score=58.95  Aligned_cols=95  Identities=19%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             CeEEEEcCCchHHHHH-HHHH-HHCCCe-EEEEEeCCc---hhhhccccCCCCeEEEEccCCCC-hHhHHHHhcCCCCEE
Q 022216           67 KKIFVAGATGSSGKRI-VEQL-LAKGFA-VKAGVRDLD---KAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAV  139 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~-~~~l-~~~G~~-V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~V  139 (301)
                      ++|||+|+ |.+|... ++.+ ...|++ |++++++++   +.+....   .+...+  |..+. ...+.+. .+++|+|
T Consensus       174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~---lGa~~v--~~~~~~~~~i~~~-~gg~Dvv  246 (357)
T 2b5w_A          174 SSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE---LDATYV--DSRQTPVEDVPDV-YEQMDFI  246 (357)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH---TTCEEE--ETTTSCGGGHHHH-SCCEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH---cCCccc--CCCccCHHHHHHh-CCCCCEE
Confidence            89999999 9999999 8777 677987 999999887   6655432   344444  65541 1124444 3249999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |.++|..             ......++.++..  +++|.++..
T Consensus       247 id~~g~~-------------~~~~~~~~~l~~~--G~iv~~g~~  275 (357)
T 2b5w_A          247 YEATGFP-------------KHAIQSVQALAPN--GVGALLGVP  275 (357)
T ss_dssp             EECSCCH-------------HHHHHHHHHEEEE--EEEEECCCC
T ss_pred             EECCCCh-------------HHHHHHHHHHhcC--CEEEEEeCC
Confidence            9998731             1123344444443  588888764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.16  E-value=0.00076  Score=59.99  Aligned_cols=77  Identities=17%  Similarity=0.153  Sum_probs=57.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccC------------------CCChH
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADV------------------TEGSA  126 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl------------------~~~~~  126 (301)
                      .+.+|+|+|+ |.+|..+++.+...|++|++.+|++++++....   .+..++..|+                  .+ .+
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~---lGa~~~~l~~~~~~~~gya~~~~~~~~~~~-~~  257 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS---VGAQWLDLGIDAAGEGGYARELSEAERAQQ-QQ  257 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH---TTCEECCCC-------------CHHHHHHH-HH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCeEEeccccccccccchhhhhHHHHhhh-HH
Confidence            5789999998 999999999999999999999999887665543   2333333221                  01 25


Q ss_pred             hHHHHhcCCCCEEEEccCCCC
Q 022216          127 KLSEAIGDDSEAVVCATGFQP  147 (301)
Q Consensus       127 ~~~~~~~~~~d~Vi~~Ag~~~  147 (301)
                      .+.+.+++ .|+||.++.+..
T Consensus       258 ~l~e~l~~-aDIVI~tv~iPg  277 (381)
T 3p2y_A          258 ALEDAITK-FDIVITTALVPG  277 (381)
T ss_dssp             HHHHHHTT-CSEEEECCCCTT
T ss_pred             HHHHHHhc-CCEEEECCCCCC
Confidence            67788888 999999875543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.14  E-value=0.00054  Score=59.76  Aligned_cols=107  Identities=18%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      .++|.|+|+ |.+|..++..|+..|.  +|++++++++..+....+       ....+.+..   .+     .+++++ .
T Consensus         6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~---~~-----~~al~~-a   75 (316)
T 1ldn_A            6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH---GD-----YDDCRD-A   75 (316)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE---CC-----GGGTTT-C
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc---Cc-----HHHhCC-C
Confidence            579999999 9999999999998874  899988886543321110       111333332   12     235788 9


Q ss_pred             CEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          137 EAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      |+||.++++...  .+....+..|..-...+++.+.+.... .++++|-
T Consensus        76 DvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             SEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            999999986542  223344566666677788888776543 4444433

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.13  E-value=0.00053  Score=62.33  Aligned_cols=115  Identities=17%  Similarity=0.105  Sum_probs=67.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC------------ChHhHHHHh
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE------------GSAKLSEAI  132 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~------------~~~~~~~~~  132 (301)
                      ++.+|.|.|. |++|..++..|++.|++|++++.++++.+.+...   ...+++-++.+            ...+..+++
T Consensus        20 ~m~~IaViGl-GYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G---~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai   95 (444)
T 3vtf_A           20 HMASLSVLGL-GYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAG---RPHIYEPGLEEALGRALSSGRLSFAESAEEAV   95 (444)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTT---CCSSCCTTHHHHHHHHHHTTCEEECSSHHHHH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCC---CCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHH
Confidence            3578999985 9999999999999999999999998887766431   11111111100            001234556


Q ss_pred             cCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecccc
Q 022216          133 GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSIL  184 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~~  184 (301)
                      .+ .|++|-|.+.....+...-+.--......+.+.++..+.+ -+|+-||+.
T Consensus        96 ~~-ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVp  147 (444)
T 3vtf_A           96 AA-TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVP  147 (444)
T ss_dssp             HT-SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCC
T ss_pred             hc-CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            66 8999999876543332111111112234444555543323 455556653

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.13  E-value=0.0009  Score=58.10  Aligned_cols=105  Identities=22%  Similarity=0.237  Sum_probs=68.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |+|.|+| +|.+|..++..|++.|  ++|++.+|+++..+.....       ....+....   +|    . +.+++ .|
T Consensus         2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~d----~-~~~~~-aD   71 (309)
T 1hyh_A            2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI---ND----W-AALAD-AD   71 (309)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE---SC----G-GGGTT-CS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe---CC----H-HHhCC-CC
Confidence            6899999 5999999999999999  7999999987655433211       011223222   23    2 35677 99


Q ss_pred             EEEEccCCCC------CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEec
Q 022216          138 AVVCATGFQP------GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILIS  181 (301)
Q Consensus       138 ~Vi~~Ag~~~------~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~S  181 (301)
                      +||.+++...      .......+..|+.-...+++.+.+.... .+|.++
T Consensus        72 vViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t  122 (309)
T 1hyh_A           72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (309)
T ss_dssp             EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            9999987532      2223344566777777888888775433 445543

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.12  E-value=0.0015  Score=55.49  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEE-EeCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAG-VRDL  100 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~-~r~~  100 (301)
                      |++++|.|+|++|.+|+.+++.+.+. +.+++.. +|+.
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~   43 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTG   43 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTT
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecC
Confidence            45689999999999999999999876 5677764 5553

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.12  E-value=0.00059  Score=60.25  Aligned_cols=92  Identities=20%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|||+|+ |.+|...++.+...|++|+++++++++.+.... .+...  +.   .+ .+.+.+   + +|+||.++|
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~--v~---~~-~~~~~~---~-~D~vid~~g  243 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS-MGVKH--FY---TD-PKQCKE---E-LDFIISTIP  243 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH-TTCSE--EE---SS-GGGCCS---C-EEEEEECCC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh-cCCCe--ec---CC-HHHHhc---C-CCEEEECCC
Confidence            5789999997 999999999998899999999998887765543 22222  22   34 333322   6 999999987


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      ....             ....++.++..  ++++.++..
T Consensus       244 ~~~~-------------~~~~~~~l~~~--G~iv~~G~~  267 (348)
T 3two_A          244 THYD-------------LKDYLKLLTYN--GDLALVGLP  267 (348)
T ss_dssp             SCCC-------------HHHHHTTEEEE--EEEEECCCC
T ss_pred             cHHH-------------HHHHHHHHhcC--CEEEEECCC
Confidence            4311             22333333333  588887654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.11  E-value=0.00094  Score=58.70  Aligned_cols=98  Identities=17%  Similarity=0.148  Sum_probs=64.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++|||+|+ |++|...++.+...|++|+++++++++.+.... .+... +  .|..+  ..+.+.+..++ +|+||.+
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~-~--i~~~~~~~~~~~~~~~g~-~d~vid~  239 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR-LGAEV-A--VNARDTDPAAWLQKEIGG-AHGVLVT  239 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCSE-E--EETTTSCHHHHHHHHHSS-EEEEEES
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-cCCCE-E--EeCCCcCHHHHHHHhCCC-CCEEEEe
Confidence            5789999997 899999999998999999999998877665433 22221 2  24433  12445554456 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +|..             ......++.++..  ++++.++..
T Consensus       240 ~g~~-------------~~~~~~~~~l~~~--G~iv~~G~~  265 (340)
T 3s2e_A          240 AVSP-------------KAFSQAIGMVRRG--GTIALNGLP  265 (340)
T ss_dssp             SCCH-------------HHHHHHHHHEEEE--EEEEECSCC
T ss_pred             CCCH-------------HHHHHHHHHhccC--CEEEEeCCC
Confidence            8621             1123334444433  588887654

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.10  E-value=0.00032  Score=59.87  Aligned_cols=34  Identities=26%  Similarity=0.527  Sum_probs=28.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEe
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVR   98 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r   98 (301)
                      ++++|+|+|++|.+|+.+++.+++. |+++++..+
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d   38 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALE   38 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEEC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            4579999999999999999998854 778875543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.10  E-value=0.0012  Score=60.56  Aligned_cols=103  Identities=17%  Similarity=0.314  Sum_probs=76.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      -++|+|.|| |.+|..+++.| +.+++|.++.++.++.+.+.. ..++..++.+|-+| .+-+.++ +.+ .|++|-..+
T Consensus       235 ~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d~~r~~~la~-~l~~~~Vi~GD~td-~~~L~ee~i~~-~D~~ia~T~  309 (461)
T 4g65_A          235 YRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERNLQRAEKLSE-ELENTIVFCGDAAD-QELLTEENIDQ-VDVFIALTN  309 (461)
T ss_dssp             CCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESCHHHHHHHHH-HCTTSEEEESCTTC-HHHHHHTTGGG-CSEEEECCS
T ss_pred             ccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecCHHHHHHHHH-HCCCceEEeccccc-hhhHhhcCchh-hcEEEEccc
Confidence            578999998 99999999987 557999999988887776554 33678899999999 6666654 455 999997653


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN  186 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~  186 (301)
                      -    |     ++|+.    .+..|++.|++++|-.-.-..|
T Consensus       310 ~----D-----e~Ni~----~~llAk~~gv~kvIa~vn~~~~  338 (461)
T 4g65_A          310 E----D-----ETNIM----SAMLAKRMGAKKVMVLIQRGAY  338 (461)
T ss_dssp             C----H-----HHHHH----HHHHHHHTTCSEEEEECSCHHH
T ss_pred             C----c-----HHHHH----HHHHHHHcCCccccccccccch
Confidence            1    1     34444    4555688899888875554333

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.09  E-value=0.0011  Score=59.46  Aligned_cols=77  Identities=13%  Similarity=0.156  Sum_probs=54.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCC--------------------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT--------------------  122 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~--------------------  122 (301)
                      .+.+++|+|+|+ |.+|..+++.+...|++|++.+|++.+.+....   .+..++..|..                    
T Consensus       169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~---~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~  244 (384)
T 1l7d_A          169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVES---LGGKFITVDDEAMKTAETAGGYAKEMGEEFR  244 (384)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH---TTCEECCC-----------------------
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---cCCeEEeecccccccccccccchhhcCHHHH
Confidence            346899999996 999999999999999999999998876654432   12222211110                    


Q ss_pred             -CChHhHHHHhcCCCCEEEEccC
Q 022216          123 -EGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus       123 -~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                       ...+.+.+.+.+ .|+||+++.
T Consensus       245 ~~~~~~l~~~~~~-aDvVi~~~~  266 (384)
T 1l7d_A          245 KKQAEAVLKELVK-TDIAITTAL  266 (384)
T ss_dssp             CCHHHHHHHHHTT-CSEEEECCC
T ss_pred             hhhHHHHHHHhCC-CCEEEECCc
Confidence             002337777888 999999883

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.09  E-value=0.00045  Score=61.30  Aligned_cols=96  Identities=17%  Similarity=0.216  Sum_probs=59.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      +.++|.|.||+|.+|+.+++.|.+++. +++.+.+..+...+..   ......+   ..|+.- .+  .+.+.+ +|+||
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v---~~dl~~-~~--~~~~~~-vDvVf   87 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQK---LPTLVS-VK--DADFST-VDAVF   87 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSC---CCCCBC-GG--GCCGGG-CSEEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcc---ccccee-cc--hhHhcC-CCEEE
Confidence            456899999999999999999998864 7877765432211110   0000111   134432 22  334567 99999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      .|++...              +...+..+ +.|+ ++|-.|+.
T Consensus        88 ~atp~~~--------------s~~~a~~~-~aG~-~VId~sa~  114 (359)
T 1xyg_A           88 CCLPHGT--------------TQEIIKEL-PTAL-KIVDLSAD  114 (359)
T ss_dssp             ECCCTTT--------------HHHHHHTS-CTTC-EEEECSST
T ss_pred             EcCCchh--------------HHHHHHHH-hCCC-EEEECCcc
Confidence            9986432              35566666 6675 68888775

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.09  E-value=0.0036  Score=55.06  Aligned_cols=94  Identities=23%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC---eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .++|+|.||+|.+|+.+++.|+++++   +++.+...........- ....+.+  .|+ + .+    .+.+ +|+||.|
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~-~g~~i~~--~~~-~-~~----~~~~-~DvV~~a   75 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF-AESSLRV--GDV-D-SF----DFSS-VGLAFFA   75 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE-TTEEEEC--EEG-G-GC----CGGG-CSEEEEC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCcccc-CCcceEE--ecC-C-HH----HhcC-CCEEEEc
Confidence            36899999999999999999997654   45555422111010000 1111111  122 1 11    2467 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      .|..              .+..+++.+.+.|+ ++|-+|+..
T Consensus        76 ~g~~--------------~s~~~a~~~~~aG~-kvId~Sa~~  102 (340)
T 2hjs_A           76 AAAE--------------VSRAHAERARAAGC-SVIDLSGAL  102 (340)
T ss_dssp             SCHH--------------HHHHHHHHHHHTTC-EEEETTCTT
T ss_pred             CCcH--------------HHHHHHHHHHHCCC-EEEEeCCCC
Confidence            8631              24667778888886 577777764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.08  E-value=0.0014  Score=59.05  Aligned_cols=76  Identities=20%  Similarity=0.371  Sum_probs=54.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC--C-hHhHHHHhcC-CCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--G-SAKLSEAIGD-DSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~-~~~~~~~~~~-~~d~V  139 (301)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+....   .+..+  .|..+  . .+.+.+...+ ++|+|
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~---lGa~~--i~~~~~~~~~~~~~~~~~g~g~Dvv  258 (398)
T 2dph_A          185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD---AGFET--IDLRNSAPLRDQIDQILGKPEVDCG  258 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT---TTCEE--EETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH---cCCcE--EcCCCcchHHHHHHHHhCCCCCCEE
Confidence            4789999997 9999999988888898 89999988877665432   23343  34443  1 2344454443 49999


Q ss_pred             EEccCCC
Q 022216          140 VCATGFQ  146 (301)
Q Consensus       140 i~~Ag~~  146 (301)
                      |.++|..
T Consensus       259 id~~g~~  265 (398)
T 2dph_A          259 VDAVGFE  265 (398)
T ss_dssp             EECSCTT
T ss_pred             EECCCCc
Confidence            9999753

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.08  E-value=0.00053  Score=58.56  Aligned_cols=72  Identities=29%  Similarity=0.354  Sum_probs=53.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+++++|+|.|+ |++|++++..|++.|++|++..|++++.+++....  ++.     +.+   ++.+.+.+ .|+||++
T Consensus       126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~--g~~-----~~~---~~~~~~~~-aDiVi~a  193 (275)
T 2hk9_A          126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF--PLE-----VVN---SPEEVIDK-VQVIVNT  193 (275)
T ss_dssp             TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS--CEE-----ECS---CGGGTGGG-CSEEEEC
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc--CCe-----eeh---hHHhhhcC-CCEEEEe
Confidence            457899999996 99999999999999999999999887766654311  222     221   13345567 9999999


Q ss_pred             cCCC
Q 022216          143 TGFQ  146 (301)
Q Consensus       143 Ag~~  146 (301)
                      ....
T Consensus       194 tp~~  197 (275)
T 2hk9_A          194 TSVG  197 (275)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            8643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.07  E-value=0.00056  Score=62.40  Aligned_cols=77  Identities=19%  Similarity=0.232  Sum_probs=50.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC----CCeEE-E-----EccCCCChHhHHHHhcCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN----PSLQI-V-----KADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~-~-----~~Dl~~~~~~~~~~~~~~~  136 (301)
                      |+|.|.| .|.+|..++..|++.|++|++.+|++++.+.+.....    ++..- +     .+.+.- ..+..+++.+ .
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~~~-a   77 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAVLD-S   77 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHHHT-C
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHhcc-C
Confidence            4789998 5999999999999999999999998877766543110    00000 0     001111 1224456677 9


Q ss_pred             CEEEEccCCC
Q 022216          137 EAVVCATGFQ  146 (301)
Q Consensus       137 d~Vi~~Ag~~  146 (301)
                      |+||.+.+..
T Consensus        78 DvviiaVptp   87 (436)
T 1mv8_A           78 DVSFICVGTP   87 (436)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEEEcCCC
Confidence            9999998643

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.06  E-value=0.0021  Score=58.60  Aligned_cols=96  Identities=11%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-C---eEEEEEeCCchhhhccccCCCCeEEEEccCCCC-h-HhHHHHhcCCCCEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-F---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-S-AKLSEAIGDDSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~-~~~~~~~~~~~d~V  139 (301)
                      .++|+|.| .|+||+.++..|++++ .   +|++.+...... ++..  ..++.+...++++. . +.+.+++++ .|+|
T Consensus        13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~~~~--~~g~~~~~~~Vdadnv~~~l~aLl~~-~DvV   87 (480)
T 2ph5_A           13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-DVAQ--QYGVSFKLQQITPQNYLEVIGSTLEE-NDFL   87 (480)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-CHHH--HHTCEEEECCCCTTTHHHHTGGGCCT-TCEE
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-hHHh--hcCCceeEEeccchhHHHHHHHHhcC-CCEE
Confidence            35799999 5999999999999874 4   688776554432 2111  11456666676551 2 345567777 6999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEec
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~S  181 (301)
                      ||.+-..              ....++++|.+.|+ .+|-++
T Consensus        88 IN~s~~~--------------~~l~Im~acleaGv-~YlDTa  114 (480)
T 2ph5_A           88 IDVSIGI--------------SSLALIILCNQKGA-LYINAA  114 (480)
T ss_dssp             EECCSSS--------------CHHHHHHHHHHHTC-EEEESS
T ss_pred             EECCccc--------------cCHHHHHHHHHcCC-CEEECC
Confidence            9855211              15779999999986 454443

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.04  E-value=0.00062  Score=60.53  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=50.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHH-CCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+|||+||+|.+|...++.+.. .|.+|+++++++++.+.+.. .+  ...+ .|..+. .+.+.+.-.+++|+||.|
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~-lG--ad~v-i~~~~~~~~~v~~~~~~g~Dvvid~  246 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS-LG--AHHV-IDHSKPLAAEVAALGLGAPAFVFST  246 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-TT--CSEE-ECTTSCHHHHHHTTCSCCEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-cC--CCEE-EeCCCCHHHHHHHhcCCCceEEEEC
Confidence            478999999999999988877765 58999999988776655432 22  2221 233331 233433311159999999


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      +|
T Consensus       247 ~g  248 (363)
T 4dvj_A          247 TH  248 (363)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.04  E-value=0.0018  Score=58.10  Aligned_cols=78  Identities=21%  Similarity=0.254  Sum_probs=57.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEcc----------------CCCC----
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKAD----------------VTEG----  124 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D----------------l~~~----  124 (301)
                      .+.+|+|+|+ |-+|...++.+...|++|++.++++..++....   .+..++..+                ++++    
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~---~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~  264 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVAS---LGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVK  264 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH---TTCEECCCCC-----------------CHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH---cCCceeecccccccccccccchhhhcchhhhhh
Confidence            5689999998 999999999999999999999999887665442   122332221                2331    


Q ss_pred             -hHhHHHHhcCCCCEEEEccCCCC
Q 022216          125 -SAKLSEAIGDDSEAVVCATGFQP  147 (301)
Q Consensus       125 -~~~~~~~~~~~~d~Vi~~Ag~~~  147 (301)
                       .+.+.+.+++ .|+||.++....
T Consensus       265 ~~~~l~e~l~~-aDVVI~tvlipg  287 (405)
T 4dio_A          265 QAALVAEHIAK-QDIVITTALIPG  287 (405)
T ss_dssp             HHHHHHHHHHT-CSEEEECCCCSS
T ss_pred             hHhHHHHHhcC-CCEEEECCcCCC
Confidence             2477888888 999999986543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.04  E-value=0.00055  Score=59.72  Aligned_cols=73  Identities=14%  Similarity=0.117  Sum_probs=51.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|||+||+|.+|...++.+...|++|+++.++ ++.+.... .+  ... ..|..+ .+.+.+.+++ +|+||.+.|
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~~~~~~~-lG--a~~-~i~~~~-~~~~~~~~~g-~D~v~d~~g  224 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RNHAFLKA-LG--AEQ-CINYHE-EDFLLAISTP-VDAVIDLVG  224 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HHHHHHHH-HT--CSE-EEETTT-SCHHHHCCSC-EEEEEESSC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-chHHHHHH-cC--CCE-EEeCCC-cchhhhhccC-CCEEEECCC
Confidence            57899999999999999999999999999988754 33332221 11  211 235555 3336666677 999999987

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.03  E-value=0.0053  Score=51.31  Aligned_cols=100  Identities=19%  Similarity=0.208  Sum_probs=62.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHH----HhcCCCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE----AIGDDSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~----~~~~~~d~Vi~  141 (301)
                      ++|+|.|++|.+|+.+++.+.+. |++++...+..+.++++..   .... +..|++. ++.+.+    ++..++++|+-
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~---~~~D-vvIDfT~-p~a~~~~~~~a~~~g~~~Vig   75 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD---GNTE-VVIDFTH-PDVVMGNLEFLIDNGIHAVVG   75 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH---TTCC-EEEECSC-TTTHHHHHHHHHHTTCEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc---cCCc-EEEEccC-hHHHHHHHHHHHHcCCCEEEc
Confidence            47999999999999999999876 8999877665544444332   1223 5678887 444433    23334888886


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~  184 (301)
                      ..|...            .-...+.+++++. +. .+++.+..+
T Consensus        76 TTG~~~------------e~~~~l~~aa~~~~~~-~vv~a~N~s  106 (245)
T 1p9l_A           76 TTGFTA------------ERFQQVESWLVAKPNT-SVLIAPNFA  106 (245)
T ss_dssp             CCCCCH------------HHHHHHHHHHHTSTTC-EEEECSCCC
T ss_pred             CCCCCH------------HHHHHHHHHHHhCCCC-CEEEECCcc
Confidence            665331            1123455555544 43 567766654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.02  E-value=0.0013  Score=58.78  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=52.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCC----CChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVT----EGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~----~~~~~~~~~~~~~~d~V  139 (301)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++++.... .  +...+ .|..    +..+.+.+...+++|+|
T Consensus       193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~-l--Ga~~v-i~~~~~~~~~~~~i~~~~~gg~D~v  267 (378)
T 3uko_A          193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK-F--GVNEF-VNPKDHDKPIQEVIVDLTDGGVDYS  267 (378)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT-T--TCCEE-ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c--CCcEE-EccccCchhHHHHHHHhcCCCCCEE
Confidence            4789999998 9999999988888898 89999988888765432 2  22221 2332    11244444443359999


Q ss_pred             EEccCC
Q 022216          140 VCATGF  145 (301)
Q Consensus       140 i~~Ag~  145 (301)
                      |.++|.
T Consensus       268 id~~g~  273 (378)
T 3uko_A          268 FECIGN  273 (378)
T ss_dssp             EECSCC
T ss_pred             EECCCC
Confidence            999874

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=97.00  E-value=0.0043  Score=58.81  Aligned_cols=105  Identities=15%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------ccc--CCCCeEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSK--DNPSLQIV  117 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~--~~~~~~~~  117 (301)
                      .+.+.+|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                      +..  ....+..+
T Consensus        14 kL~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~   92 (640)
T 1y8q_B           14 AVAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAY   92 (640)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEE
T ss_pred             HHhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEE
Confidence            456789999998 9999999999999996 788877654111100                      001  23456667


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ..++++ .....+.+.+ +|+||.+..             |...-..+-++|.+.++ .+|..++.+
T Consensus        93 ~~~i~~-~~~~~~~~~~-~DlVvda~D-------------n~~aR~~ln~~c~~~~i-PlI~~g~~G  143 (640)
T 1y8q_B           93 HDSIMN-PDYNVEFFRQ-FILVMNALD-------------NRAARNHVNRMCLAADV-PLIESGTAG  143 (640)
T ss_dssp             ESCTTS-TTSCHHHHTT-CSEEEECCS-------------CHHHHHHHHHHHHHHTC-CEEEEEEET
T ss_pred             ecccch-hhhhHhhhcC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEEEec
Confidence            777765 3223456777 999998752             34555667777887775 466655443

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.00  E-value=0.00058  Score=61.07  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             cCCeEEEEc-CCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAG-ATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtG-atG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi  140 (301)
                      .+.+|||.| |+|.+|...++.+...|++|+++++++++.+.... .+... +  .|..+.  .+.+.+...+ ++|+||
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~-~--~~~~~~~~~~~v~~~t~~~g~d~v~  245 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA-QGAVH-V--CNAASPTFMQDLTEALVSTGATIAF  245 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH-TTCSC-E--EETTSTTHHHHHHHHHHHHCCCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-CCCcE-E--EeCCChHHHHHHHHHhcCCCceEEE
Confidence            578999997 89999999998888889999999988877665443 22211 2  233331  2445554432 499999


Q ss_pred             EccCC
Q 022216          141 CATGF  145 (301)
Q Consensus       141 ~~Ag~  145 (301)
                      .|+|.
T Consensus       246 d~~g~  250 (379)
T 3iup_A          246 DATGG  250 (379)
T ss_dssp             ESCEE
T ss_pred             ECCCc
Confidence            99974

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.00  E-value=0.0011  Score=60.79  Aligned_cols=109  Identities=18%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC----CCeEE-E-----EccCCCChHhHHHHhcCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN----PSLQI-V-----KADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~-~-----~~Dl~~~~~~~~~~~~~~~  136 (301)
                      |+|.|.|+ |.+|..++..|++.|++|++.+|++++.+.+.....    +++.- +     ...+.- ..+..+++.+ .
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~~~-a   79 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAVPE-A   79 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHGGG-C
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHHhc-C
Confidence            68999986 999999999999999999999999887666543110    00000 0     001110 1235556777 9


Q ss_pred             CEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecc
Q 022216          137 EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS  182 (301)
                      |+||.+.+.....+    -..|+.....+++...+. ..+.+|...|
T Consensus        80 DvViiaVptp~~~~----~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           80 DIIFIAVGTPAGED----GSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             SEEEECCCCCBCTT----SSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CEEEEEcCCCcccC----CCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence            99999986543221    134555566666655442 2344444333

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.99  E-value=0.0025  Score=55.77  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL  100 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~  100 (301)
                      .+++++|+|.|+ |++|.++++.|+..|. ++++++++.
T Consensus        31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            456899999998 9999999999999996 677777653

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.99  E-value=0.0049  Score=54.10  Aligned_cols=94  Identities=18%  Similarity=0.189  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC---CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|.|.||+|.+|+.+++.|.+++   .+++.+....+......- ....+.+.  |+ + .+    .+.+ +|+||.|
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~-~~~~i~~~--~~-~-~~----~~~~-vDvVf~a   72 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRF-NGKTVRVQ--NV-E-EF----DWSQ-VHIALFS   72 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEE-TTEEEEEE--EG-G-GC----CGGG-CSEEEEC
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceee-cCceeEEe--cC-C-hH----HhcC-CCEEEEC
Confidence            5789999999999999999999883   467766532111111100 11122222  22 1 11    2356 9999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      .|..              .+...++.+.+.|+ ++|-.|+..
T Consensus        73 ~g~~--------------~s~~~a~~~~~~G~-~vId~s~~~   99 (336)
T 2r00_A           73 AGGE--------------LSAKWAPIAAEAGV-VVIDNTSHF   99 (336)
T ss_dssp             SCHH--------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred             CCch--------------HHHHHHHHHHHcCC-EEEEcCCcc
Confidence            8632              24667777778786 788878763

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.99  E-value=0.0011  Score=58.69  Aligned_cols=76  Identities=16%  Similarity=0.053  Sum_probs=53.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|||+|+ |++|...++.+... |++|+++++++++.+.... .+  ... ..|..+. .+.+.+...+ ++|+||.
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~-lG--a~~-vi~~~~~~~~~v~~~~~g~g~Dvvid  260 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-LG--ADH-VVDARRDPVKQVMELTRGRGVNVAMD  260 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-TT--CSE-EEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hC--CCE-EEeccchHHHHHHHHhCCCCCcEEEE
Confidence            4789999999 99999999888888 9999999988777665432 22  221 1344441 1344444433 4999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      ++|.
T Consensus       261 ~~G~  264 (359)
T 1h2b_A          261 FVGS  264 (359)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.98  E-value=0.0011  Score=59.82  Aligned_cols=76  Identities=17%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi  140 (301)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .+  ...+ .|..+  ..+.+.+...+ ++|+||
T Consensus       213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~-lG--a~~v-i~~~~~~~~~~i~~~t~g~g~D~vi  287 (404)
T 3ip1_A          213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE-LG--ADHV-IDPTKENFVEAVLDYTNGLGAKLFL  287 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HT--CSEE-ECTTTSCHHHHHHHHTTTCCCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-cC--CCEE-EcCCCCCHHHHHHHHhCCCCCCEEE
Confidence            4789999998 9999999998888999 89988888776654432 11  2211 23333  12455555544 599999


Q ss_pred             EccCC
Q 022216          141 CATGF  145 (301)
Q Consensus       141 ~~Ag~  145 (301)
                      .++|.
T Consensus       288 d~~g~  292 (404)
T 3ip1_A          288 EATGV  292 (404)
T ss_dssp             ECSSC
T ss_pred             ECCCC
Confidence            99874

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.97  E-value=0.00015  Score=63.49  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      +.++|.|+|+ |.+|..++-.|+..+.  ++++++++.++++....+      ...++.+.. |  +     .+++++ .
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~-----~~a~~~-a   77 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--E-----YSDAKD-A   77 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C-----GGGGGG-C
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--C-----HHHhCC-C
Confidence            4579999999 9999999999998875  899888876554331110      112333332 1  1     345788 9


Q ss_pred             CEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          137 EAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      |+||.++|....  .+....+..|+.-...+++.+++.+. ..+|.+|-
T Consensus        78 DvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  126 (326)
T 2zqz_A           78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             SEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            999999986532  22223456777778888888877753 46666644

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.97  E-value=0.00027  Score=61.48  Aligned_cols=107  Identities=14%  Similarity=0.062  Sum_probs=68.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCCchhhhcccc--C-----CCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLDKAKTTLSK--D-----NPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~~~~~~~~~~--~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |+|.|+|+ |.+|..++..|++.  |++|+++++++++.+....+  .     .....+..  .+|    ..+ +++ .|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~--t~d----~~~-l~~-aD   71 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG--SND----YAD-TAN-SD   71 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE--ESC----GGG-GTT-CS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE--CCC----HHH-HCC-CC
Confidence            57999998 99999999999985  78999999998765543210  0     01111111  022    223 678 99


Q ss_pred             EEEEccCCCCCC--CCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          138 AVVCATGFQPGW--DLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~~~--~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      +||.+++.....  .....+..|..-...+++.+.+... ..+|.++.
T Consensus        72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN  119 (310)
T 1guz_A           72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (310)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            999999854321  1222344677777788888877653 45566544

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.95  E-value=0.0022  Score=57.07  Aligned_cols=100  Identities=18%  Similarity=0.063  Sum_probs=62.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC----ChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE----GSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~~~~d~V  139 (301)
                      .+++|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .  +...+ .|..+    ..+.+.+...+++|+|
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-l--Ga~~v-i~~~~~~~~~~~~~~~~~~~g~D~v  266 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-F--GATDF-VNPNDHSEPISQVLSKMTNGGVDFS  266 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T--TCCEE-ECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-h--CCceE-EeccccchhHHHHHHHHhCCCCCEE
Confidence            4789999996 9999999998888998 79988888877665432 2  22211 23332    1233444333249999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |+++|..             ......+++++.. .+++|.++..
T Consensus       267 id~~g~~-------------~~~~~~~~~l~~~-~G~iv~~G~~  296 (374)
T 1cdo_A          267 LECVGNV-------------GVMRNALESCLKG-WGVSVLVGWT  296 (374)
T ss_dssp             EECSCCH-------------HHHHHHHHTBCTT-TCEEEECSCC
T ss_pred             EECCCCH-------------HHHHHHHHHhhcC-CcEEEEEcCC
Confidence            9998741             1122333333332 1589988764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.94  E-value=0.0023  Score=56.98  Aligned_cols=76  Identities=13%  Similarity=0.038  Sum_probs=51.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC----ChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE----GSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~~~~d~V  139 (301)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .+.. .+  .|..+    ..+.+.+...+++|+|
T Consensus       195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-~v--i~~~~~~~~~~~~v~~~~~~g~Dvv  269 (376)
T 1e3i_A          195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-LGAT-DC--LNPRELDKPVQDVITELTAGGVDYS  269 (376)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCS-EE--ECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCc-EE--EccccccchHHHHHHHHhCCCccEE
Confidence            4789999996 9999999998888998 79988888877665432 2221 12  23332    1233444333249999


Q ss_pred             EEccCC
Q 022216          140 VCATGF  145 (301)
Q Consensus       140 i~~Ag~  145 (301)
                      |.++|.
T Consensus       270 id~~G~  275 (376)
T 1e3i_A          270 LDCAGT  275 (376)
T ss_dssp             EESSCC
T ss_pred             EECCCC
Confidence            999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.93  E-value=0.00035  Score=61.16  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=47.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcCCCCEEEEccC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +|||+||+|++|...++.+...|++|+++++++++.+.... .+.. .++  |..+. .+.+.+...+++|+||+|+|
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-lGa~-~v~--~~~~~~~~~~~~~~~~~~d~vid~~g  226 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ-LGAS-EVI--SREDVYDGTLKALSKQQWQGAVDPVG  226 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH-HTCS-EEE--EHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCc-EEE--ECCCchHHHHHHhhcCCccEEEECCc
Confidence            89999999999999999888889999999998777654432 1111 112  22110 00111111114899999987

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.93  E-value=0.0016  Score=58.66  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=55.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCC-------------CCh-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT-------------EGS-----  125 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-------------~~~-----  125 (301)
                      +.+++|+|+|+ |.+|..+++.+...|++|++.+|++..++.... .  +..++..|..             + .     
T Consensus       170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~-l--Ga~~~~~~~~~~~~~~~g~~~~~~-~~~~~~  244 (401)
T 1x13_A          170 VPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M--GAEFLELDFKEEAGSGDGYAKVMS-DAFIKA  244 (401)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHH-T--TCEECCC--------CCHHHHHHS-HHHHHH
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-c--CCEEEEecccccccccccchhhcc-HHHHHH
Confidence            45889999997 999999999999999999999998877665432 2  3333322221             1 1     


Q ss_pred             --HhHHHHhcCCCCEEEEccCCC
Q 022216          126 --AKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus       126 --~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                        +.+.+.+.+ .|+||.++++.
T Consensus       245 ~~~~l~e~~~~-aDvVI~~~~~p  266 (401)
T 1x13_A          245 EMELFAAQAKE-VDIIVTTALIP  266 (401)
T ss_dssp             HHHHHHHHHHH-CSEEEECCCCT
T ss_pred             HHHHHHHHhCC-CCEEEECCccC
Confidence              146677778 99999997653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.93  E-value=0.0016  Score=53.67  Aligned_cols=73  Identities=19%  Similarity=0.301  Sum_probs=53.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .++++++|||.|| |-+|...++.|++.|++|++++..... +.++.  ...++.++..++.+ .     .+.+ +|.||
T Consensus        27 l~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~--~~~~i~~i~~~~~~-~-----dL~~-adLVI   96 (223)
T 3dfz_A           27 LDLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVSAEINEWE--AKGQLRVKRKKVGE-E-----DLLN-VFFIV   96 (223)
T ss_dssp             ECCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHH--HTTSCEEECSCCCG-G-----GSSS-CSEEE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH--HcCCcEEEECCCCH-h-----HhCC-CCEEE
Confidence            4678999999998 999999999999999999998766543 22232  22467777666553 1     2456 99998


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      -+.+
T Consensus        97 aAT~  100 (223)
T 3dfz_A           97 VATN  100 (223)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            6543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.91  E-value=0.0018  Score=56.15  Aligned_cols=82  Identities=15%  Similarity=0.046  Sum_probs=56.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeE-EEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQ-IVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+.+++++|.|++.-+|+.+++.|++.|++|+++.|+.....+.......... ......++ ++.+.+.+.+ .|+||.
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~-~~~L~e~l~~-ADIVIs  251 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYS-EDLLKKCSLD-SDVVIT  251 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECC-HHHHHHHHHH-CSEEEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhccccccccccc-HhHHHHHhcc-CCEEEE
Confidence            56799999999977889999999999999999988874433222111111111 11111133 4678889999 999999


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +.|..
T Consensus       252 Atg~p  256 (320)
T 1edz_A          252 GVPSE  256 (320)
T ss_dssp             CCCCT
T ss_pred             CCCCC
Confidence            98754

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.90  E-value=0.0067  Score=53.16  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCC---ch---hhhcccc-CC-CCeEEEEccCCCChHhHHHHhcCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDL---DK---AKTTLSK-DN-PSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~---~~---~~~~~~~-~~-~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      +++|.|.||||.+|..+++.|.++ .+++..+..+.   +.   ..+..+. .. ....+...  .+ .+   +...+ +
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~~-~~---~~~~~-~   76 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--SD-IS---EFSPG-V   76 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--SS-GG---GTCTT-C
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEecc--CC-HH---HHhcC-C
Confidence            478999999999999999999986 45887775543   21   1111110 01 12222221  02 11   12256 9


Q ss_pred             CEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          137 EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       137 d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |+||.|.+.              ..+..+++.+.+.|+ ++|-.|+..
T Consensus        77 Dvvf~a~p~--------------~~s~~~~~~~~~~g~-~vIDlSa~f  109 (337)
T 3dr3_A           77 DVVFLATAH--------------EVSHDLAPQFLEAGC-VVFDLSGAF  109 (337)
T ss_dssp             SEEEECSCH--------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred             CEEEECCCh--------------HHHHHHHHHHHHCCC-EEEEcCCcc
Confidence            999998752              224566777777775 788888763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.89  E-value=0.0026  Score=56.65  Aligned_cols=100  Identities=13%  Similarity=0.104  Sum_probs=62.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC----ChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE----GSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~~~~d~V  139 (301)
                      .+++|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .+.. .+  .|..+    ..+.+.+...+++|+|
T Consensus       191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-lGa~-~v--i~~~~~~~~~~~~~~~~~~~g~D~v  265 (374)
T 2jhf_A          191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-VGAT-EC--VNPQDYKKPIQEVLTEMSNGGVDFS  265 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCS-EE--ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCc-eE--ecccccchhHHHHHHHHhCCCCcEE
Confidence            4789999995 9999999999888998 79998888877665432 2221 12  23332    1233433332249999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |+++|..             ......+++++.. .+++|.++..
T Consensus       266 id~~g~~-------------~~~~~~~~~l~~~-~G~iv~~G~~  295 (374)
T 2jhf_A          266 FEVIGRL-------------DTMVTALSCCQEA-YGVSVIVGVP  295 (374)
T ss_dssp             EECSCCH-------------HHHHHHHHHBCTT-TCEEEECSCC
T ss_pred             EECCCCH-------------HHHHHHHHHhhcC-CcEEEEeccC
Confidence            9998741             1122333444332 1589887754

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=96.89  E-value=0.011  Score=52.71  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +|+|+|+|+ |.+|+.++++|.+.|++|++++.++.......    . -..+..|..| .+.+.+...+ +|.|+.
T Consensus         1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~~~----~-~~~~~~~~~d-~~~l~~~~~~-~d~v~~   68 (380)
T 3ax6_A            1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAGQV----A-DEQIVAGFFD-SERIEDLVKG-SDVTTY   68 (380)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTGGG----S-SEEEECCTTC-HHHHHHHHHT-CSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchhhh----C-ceEEECCCCC-HHHHHHHHhc-CCEEEe
Confidence            368999997 79999999999999999998876544321111    1 1356678888 7888888877 999885

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.89  E-value=0.00082  Score=58.11  Aligned_cols=41  Identities=27%  Similarity=0.187  Sum_probs=35.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~  107 (301)
                      +|+|.|.|+ |.+|..++..|++.|++|++.+|+++..+.+.
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~   43 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIR   43 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence            478999997 99999999999999999999999877665543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.88  E-value=0.0012  Score=58.96  Aligned_cols=99  Identities=13%  Similarity=0.072  Sum_probs=63.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCC---CC--hHhHHHHhcC-CCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT---EG--SAKLSEAIGD-DSE  137 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~---~~--~~~~~~~~~~-~~d  137 (301)
                      .+++|||+| +|++|...++.+...| .+|+++++++++.+.... .+.. .++  |..   +.  .+.+.+...+ ++|
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~-lGa~-~vi--~~~~~~~~~~~~~v~~~~~g~g~D  269 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-IGAD-LTL--NRRETSVEERRKAIMDITHGRGAD  269 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-TTCS-EEE--ETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH-cCCc-EEE--eccccCcchHHHHHHHHhCCCCCc
Confidence            478999999 8999999999988899 699999988877665432 2221 222  333   20  1234444433 499


Q ss_pred             EEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       138 ~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +||+++|...             .....++.++..  +++|.++..
T Consensus       270 vvid~~g~~~-------------~~~~~~~~l~~~--G~iv~~G~~  300 (380)
T 1vj0_A          270 FILEATGDSR-------------ALLEGSELLRRG--GFYSVAGVA  300 (380)
T ss_dssp             EEEECSSCTT-------------HHHHHHHHEEEE--EEEEECCCC
T ss_pred             EEEECCCCHH-------------HHHHHHHHHhcC--CEEEEEecC
Confidence            9999997421             123344444443  588887764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.88  E-value=0.0087  Score=52.32  Aligned_cols=106  Identities=20%  Similarity=0.096  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc---------CCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK---------DNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~---------~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      .++|.|+|| |.+|..++..|+..|+ +|++.+++++.++.....         ...++...    +|    . +++++ 
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t----~d----~-~al~~-   82 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE----NN----Y-EYLQN-   82 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE----SC----G-GGGTT-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC----CC----H-HHHCC-
Confidence            368999998 9999999999999998 999989988765531110         01122211    12    2 46788 


Q ss_pred             CCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      .|+||.++|....  .........|+.-...+++.+.+.... .+|++|.
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9999999986432  122223345666677777777766433 4444444

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.88  E-value=0.0066  Score=52.78  Aligned_cols=107  Identities=16%  Similarity=0.050  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc---------CCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK---------DNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~---------~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      .++|.|+|+ |.+|..++..|++.|+ +|++.+++++.++.....         ...++...    +|    . +.+++ 
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d----~-~a~~~-   72 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT----DD----Y-ADISG-   72 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE----SC----G-GGGTT-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC----CC----H-HHhCC-
Confidence            468999998 9999999999999998 999999988765542100         01122111    12    2 45678 


Q ss_pred             CCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEeccc
Q 022216          136 SEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSI  183 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~  183 (301)
                      .|+||.++|....  ......+.-|......+++.+.+.... .+|.+|..
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp  123 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNP  123 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence            9999999986432  122222334555566677777665433 45555543

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.88  E-value=0.0026  Score=56.78  Aligned_cols=70  Identities=14%  Similarity=0.157  Sum_probs=54.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +.+|+|+|.|+ |.+|+.+++++.+.|++|++++..+.......     --..+..|..| .+.+.+.... +|+|.-
T Consensus        10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~-----ad~~~~~~~~d-~~~l~~~~~~-~dvi~~   79 (377)
T 3orq_A           10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYV-----AHEFIQAKYDD-EKALNQLGQK-CDVITY   79 (377)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTGGG-----SSEEEECCTTC-HHHHHHHHHH-CSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhhhh-----CCEEEECCCCC-HHHHHHHHHh-CCccee
Confidence            35789999997 89999999999999999999987654322211     11466789998 8889888888 998754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.85  E-value=0.0023  Score=54.39  Aligned_cols=58  Identities=21%  Similarity=0.322  Sum_probs=47.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..++||+++|.|+++-+|+.++..|++.|++|+++.|..                         ..+.+.+++ .|+||.
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-------------------------~~L~~~~~~-ADIVI~  209 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------------------KDLSLYTRQ-ADLIIV  209 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------------------SCHHHHHTT-CSEEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-------------------------hhHHHHhhc-CCEEEE
Confidence            357899999999999999999999999999999865431                         135667788 999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      ..|.
T Consensus       210 Avg~  213 (285)
T 3p2o_A          210 AAGC  213 (285)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.85  E-value=0.0013  Score=56.26  Aligned_cols=66  Identities=20%  Similarity=0.209  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +|+|.|.|++|.+|..+++.|++.|++|++.+|+++..+.+.. .  ++     +..+    ..+.+.+ .|+||.+..
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-~--g~-----~~~~----~~~~~~~-aDvVi~av~   76 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-M--GI-----PLTD----GDGWIDE-ADVVVLALP   76 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-T--TC-----CCCC----SSGGGGT-CSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-c--CC-----CcCC----HHHHhcC-CCEEEEcCC
Confidence            3689999999999999999999999999999998777665432 1  21     1223    2234566 899998763

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.83  E-value=0.0024  Score=56.81  Aligned_cols=76  Identities=14%  Similarity=0.078  Sum_probs=50.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC----ChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE----GSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~~~~d~V  139 (301)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .+.. .+  .|..+    ..+.+.+...+++|+|
T Consensus       191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-~v--i~~~~~~~~~~~~i~~~t~gg~Dvv  265 (373)
T 1p0f_A          191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-LGAT-EC--LNPKDYDKPIYEVICEKTNGGVDYA  265 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-TTCS-EE--ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCc-EE--EecccccchHHHHHHHHhCCCCCEE
Confidence            4789999996 9999999988888898 79988888777655432 2221 12  23321    1233444333249999


Q ss_pred             EEccCC
Q 022216          140 VCATGF  145 (301)
Q Consensus       140 i~~Ag~  145 (301)
                      |.++|.
T Consensus       266 id~~g~  271 (373)
T 1p0f_A          266 VECAGR  271 (373)
T ss_dssp             EECSCC
T ss_pred             EECCCC
Confidence            999874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.82  E-value=0.001  Score=57.99  Aligned_cols=95  Identities=16%  Similarity=0.070  Sum_probs=59.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQP  147 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~  147 (301)
                      +|||+||+|.+|...++.+...|++|+++++++++.+.... .+... ++  |..+ .+.+.+...+++|++|.++|.. 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~-vi--~~~~-~~~~~~~~~~~~d~v~d~~g~~-  222 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS-LGANR-IL--SRDE-FAESRPLEKQLWAGAIDTVGDK-  222 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH-HTCSE-EE--EGGG-SSCCCSSCCCCEEEEEESSCHH-
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCCE-EE--ecCC-HHHHHhhcCCCccEEEECCCcH-
Confidence            39999999999999999999999999999988877665442 22211 11  3322 1112221122489999987621 


Q ss_pred             CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          148 GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       148 ~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                                   .....+++++..  +++|.++..
T Consensus       223 -------------~~~~~~~~l~~~--G~iv~~G~~  243 (324)
T 3nx4_A          223 -------------VLAKVLAQMNYG--GCVAACGLA  243 (324)
T ss_dssp             -------------HHHHHHHTEEEE--EEEEECCCT
T ss_pred             -------------HHHHHHHHHhcC--CEEEEEecC
Confidence                         122333333333  588888765

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.82  E-value=0.0014  Score=56.99  Aligned_cols=106  Identities=14%  Similarity=0.081  Sum_probs=70.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcccc--C----CCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK--D----NPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~--~----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      ++|.|+|+ |.+|..++-.|+..+  .+++++++++++++....+  .    ..++.+.. +  +     .+++++ .|+
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~-----~~a~~~-aD~   70 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S-----YGDLEG-ARA   70 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C-----GGGGTT-EEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C-----HHHhCC-CCE
Confidence            58999998 999999999999987  5899989886555431111  0    12333332 1  2     335788 999


Q ss_pred             EEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecc
Q 022216          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISS  182 (301)
Q Consensus       139 Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS  182 (301)
                      ||.++|....  ......+..|..-...+++.+++.+. ..+|.+|-
T Consensus        71 Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           71 VVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            9999986542  22223456677777888888887754 46666654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.80  E-value=0.0085  Score=56.40  Aligned_cols=91  Identities=23%  Similarity=0.233  Sum_probs=67.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQ  146 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~  146 (301)
                      ++++|.|+ |-+|..+++.|.+.|++|++++++++..++.       ..++.+|.+| .+.+.++--++.|.+|-+.+- 
T Consensus       349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~-------~~~i~gD~t~-~~~L~~agi~~ad~vi~~~~~-  418 (565)
T 4gx0_A          349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESPVCND-------HVVVYGDATV-GQTLRQAGIDRASGIIVTTND-  418 (565)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCSSCCS-------SCEEESCSSS-STHHHHHTTTSCSEEEECCSC-
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHHHhhc-------CCEEEeCCCC-HHHHHhcCccccCEEEEECCC-
Confidence            78999998 9999999999999999999999998876542       1789999999 666666532249999987642 


Q ss_pred             CCCCCCCceeeehHHHHHHHHHHHHcCCC-EEEE
Q 022216          147 PGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFIL  179 (301)
Q Consensus       147 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~  179 (301)
                         |     +.|    ..++..+++.+.+ ++|-
T Consensus       419 ---d-----~~n----i~~~~~ak~l~~~~~iia  440 (565)
T 4gx0_A          419 ---D-----STN----IFLTLACRHLHSHIRIVA  440 (565)
T ss_dssp             ---H-----HHH----HHHHHHHHHHCSSSEEEE
T ss_pred             ---c-----hHH----HHHHHHHHHHCCCCEEEE
Confidence               1     223    3345566666654 5544

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.80  E-value=0.0083  Score=45.45  Aligned_cols=87  Identities=21%  Similarity=0.308  Sum_probs=55.9

Q ss_pred             cCCeEEEEcCC---chHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGAT---GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGat---G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +.++|.|.|++   |.+|..+++.|++.|++|+....+.++   .     .++..+        .++.++... +|+++-
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~---i-----~G~~~~--------~s~~el~~~-vDlvii   75 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE---I-----EGLKCY--------RSVRELPKD-VDVIVF   75 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---E-----TTEECB--------SSGGGSCTT-CCEEEE
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe---E-----CCeeec--------CCHHHhCCC-CCEEEE
Confidence            46899999997   899999999999999996654433211   1     122211        123333345 999988


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +..              -.....+++.+.+.|++.++..++
T Consensus        76 ~vp--------------~~~v~~v~~~~~~~g~~~i~~~~~  102 (138)
T 1y81_A           76 VVP--------------PKVGLQVAKEAVEAGFKKLWFQPG  102 (138)
T ss_dssp             CSC--------------HHHHHHHHHHHHHTTCCEEEECTT
T ss_pred             EeC--------------HHHHHHHHHHHHHcCCCEEEEcCc
Confidence            753              122455666676778877776554

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.80  E-value=0.0066  Score=53.70  Aligned_cols=71  Identities=18%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +|+|+|+|| |..|..++..+.+.|++|++++.+++......     --.++..|..+..+.+....++ +|+|+-..
T Consensus         1 MK~I~ilGg-g~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~-----aD~~~~~~~~~d~~~~~~~~~~-~D~v~~~~   71 (363)
T 4ffl_A            1 MKTICLVGG-KLQGFEAAYLSKKAGMKVVLVDKNPQALIRNY-----ADEFYCFDVIKEPEKLLELSKR-VDAVLPVN   71 (363)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTTTT-----SSEEEECCTTTCHHHHHHHHTS-SSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCChhHhh-----CCEEEECCCCcCHHHHHHHhcC-CCEEEECC
Confidence            589999996 89999999999999999999987765432211     1135566766546777776677 99987543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.78  E-value=0.0022  Score=57.04  Aligned_cols=76  Identities=13%  Similarity=0.037  Sum_probs=50.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC----ChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE----GSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~~~~d~V  139 (301)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .+.. .+  .|..+    ..+.+.+...+++|+|
T Consensus       190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~-lGa~-~v--i~~~~~~~~~~~~v~~~~~~g~D~v  264 (373)
T 2fzw_A          190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE-FGAT-EC--INPQDFSKPIQEVLIEMTDGGVDYS  264 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-HTCS-EE--ECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCc-eE--eccccccccHHHHHHHHhCCCCCEE
Confidence            4789999996 9999999988888898 79988888777654432 1111 12  23332    1233444332249999


Q ss_pred             EEccCC
Q 022216          140 VCATGF  145 (301)
Q Consensus       140 i~~Ag~  145 (301)
                      |+++|.
T Consensus       265 id~~g~  270 (373)
T 2fzw_A          265 FECIGN  270 (373)
T ss_dssp             EECSCC
T ss_pred             EECCCc
Confidence            999874

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.77  E-value=0.003  Score=57.23  Aligned_cols=70  Identities=20%  Similarity=0.203  Sum_probs=54.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +.+++|+|.|+ |.+|+.+++++.+.|++|++++.++........     -..+..|..| .+.+.+...+ +|+|+.
T Consensus        33 ~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~a-----d~~~~~~~~d-~~~l~~~a~~-~D~V~~  102 (419)
T 4e4t_A           33 LPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVA-----DRHLRAAYDD-EAALAELAGL-CEAVST  102 (419)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHS-----SEEECCCTTC-HHHHHHHHHH-CSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchhhhC-----CEEEECCcCC-HHHHHHHHhc-CCEEEE
Confidence            46889999997 899999999999999999998765543322221     1345688888 8888888887 999984

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=96.77  E-value=0.0042  Score=55.95  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      |.+++|+|.|+ |.+|+.+++++.+.|++|++++ .+........   .....+.+|..| .+.+.+.... +|+|+-
T Consensus        22 m~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~a---d~~~~~~~~~~d-~~~l~~~a~~-~d~i~~   92 (403)
T 3k5i_A           22 WNSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSPAKQIS---AHDGHVTGSFKE-REAVRQLAKT-CDVVTA   92 (403)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGC---CSSCCEESCTTC-HHHHHHHHTT-CSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhc---cccceeecCCCC-HHHHHHHHHh-CCEEEE
Confidence            45789999998 8999999999999999999998 5433222221   222456789998 8999999988 998864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.76  E-value=0.012  Score=51.90  Aligned_cols=108  Identities=13%  Similarity=0.198  Sum_probs=70.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch---hh----------------h---cccc--CCCCeEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---AK----------------T---TLSK--DNPSLQI  116 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~---~~----------------~---~~~~--~~~~~~~  116 (301)
                      ..+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.-.   +.                .   .+.+  ....+..
T Consensus        32 ~~L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~  110 (346)
T 1y8q_A           32 KRLRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKV  110 (346)
T ss_dssp             HHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEE
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEE
Confidence            3567899999997 9999999999999997 77777543211   10                0   0111  2233455


Q ss_pred             EEccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccc
Q 022216          117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGA  188 (301)
Q Consensus       117 ~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~  188 (301)
                      +..++.+   ...+.+.+ +|+||.+..             |...-..+-++|++.++ .+|..++...+|.
T Consensus       111 ~~~~~~~---~~~~~~~~-~dvVv~~~d-------------~~~~r~~ln~~~~~~~i-p~i~~~~~G~~G~  164 (346)
T 1y8q_A          111 DTEDIEK---KPESFFTQ-FDAVCLTCC-------------SRDVIVKVDQICHKNSI-KFFTGDVFGYHGY  164 (346)
T ss_dssp             ECSCGGG---CCHHHHTT-CSEEEEESC-------------CHHHHHHHHHHHHHTTC-EEEEEEEEBTEEE
T ss_pred             EecccCc---chHHHhcC-CCEEEEcCC-------------CHHHHHHHHHHHHHcCC-CEEEEeecccEEE
Confidence            5555543   23566778 999998742             34445667788888774 6777766655543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.76  E-value=0.0044  Score=55.63  Aligned_cols=76  Identities=22%  Similarity=0.384  Sum_probs=53.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCC---hHhHHHHhcC-CCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG---SAKLSEAIGD-DSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~---~~~~~~~~~~-~~d~V  139 (301)
                      .+.+|||.|+ |++|...++.+...|+ +|+++++++++++.... .  +...  .|..+.   .+.+.+...+ ++|+|
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~-l--Ga~~--i~~~~~~~~~~~v~~~t~g~g~Dvv  258 (398)
T 1kol_A          185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA-Q--GFEI--ADLSLDTPLHEQIAALLGEPEVDCA  258 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-T--TCEE--EETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH-c--CCcE--EccCCcchHHHHHHHHhCCCCCCEE
Confidence            4789999995 9999999988888898 68888888777665432 2  3343  344431   2345555443 49999


Q ss_pred             EEccCCC
Q 022216          140 VCATGFQ  146 (301)
Q Consensus       140 i~~Ag~~  146 (301)
                      |.++|..
T Consensus       259 id~~G~~  265 (398)
T 1kol_A          259 VDAVGFE  265 (398)
T ss_dssp             EECCCTT
T ss_pred             EECCCCc
Confidence            9999853

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.75  E-value=0.13  Score=43.86  Aligned_cols=90  Identities=18%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc--CCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG--DDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~~d~Vi~~A  143 (301)
                      .++|+|.|++|..|+.+++.+.+.|++++. ..++....+.    ..++..+        .++.++..  + +|++|.+.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~-~VnP~~~g~~----i~G~~vy--------~sl~el~~~~~-~Dv~Ii~v   72 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVA-GVTPGKGGME----VLGVPVY--------DTVKEAVAHHE-VDASIIFV   72 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTTCE----ETTEEEE--------SSHHHHHHHSC-CSEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEE-EECCCCCCce----ECCEEee--------CCHHHHhhcCC-CCEEEEec
Confidence            578999999999999999999999998553 3333321100    0122222        12444444  6 99999775


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      .              -..+..+++.|.+.|++.+|.+++.
T Consensus        73 p--------------~~~~~~~~~ea~~~Gi~~vVi~t~G   98 (288)
T 1oi7_A           73 P--------------APAAADAALEAAHAGIPLIVLITEG   98 (288)
T ss_dssp             C--------------HHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred             C--------------HHHHHHHHHHHHHCCCCEEEEECCC
Confidence            2              2336777888888898777776653

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.74  E-value=0.00097  Score=59.20  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--e---EEEEEeCCchh----hhc---cccCC-CCeEEEEccCCCChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--A---VKAGVRDLDKA----KTT---LSKDN-PSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~---V~~~~r~~~~~----~~~---~~~~~-~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      ..+|.|+||+|.||.+++-.|+..+.  +   +.+.+.+.+..    +-.   +.... +-..-+.  +.+   ...+.+
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~--i~~---~~y~~~  106 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVS--IGI---DPYEVF  106 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEE--EES---CHHHHT
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcE--Eec---CCHHHh
Confidence            56899999999999999999998763  2   66544433321    111   11011 1111111  222   236778


Q ss_pred             cCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHc-CC-CEEEEeccc
Q 022216          133 GDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKR-GV-NRFILISSI  183 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~-~~-~~iV~~SS~  183 (301)
                      ++ .|+||.+||...  ..+....++.|..-...+.+++.+. +. ..++.+|..
T Consensus       107 ~d-aDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP  160 (375)
T 7mdh_A          107 ED-VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP  160 (375)
T ss_dssp             TT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             CC-CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            88 999999998643  3344556788888888898888875 43 466766653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.74  E-value=0.0028  Score=56.03  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCC--CCh---HhHHHHh-cCCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVT--EGS---AKLSEAI-GDDSE  137 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~--~~~---~~~~~~~-~~~~d  137 (301)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .+.. .+  .|..  +..   +.+.+.. .+ +|
T Consensus       171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-~v--i~~~~~~~~~~~~~i~~~~~~g-~D  244 (356)
T 1pl8_A          171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-IGAD-LV--LQISKESPQEIARKVEGQLGCK-PE  244 (356)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-TTCS-EE--EECSSCCHHHHHHHHHHHHTSC-CS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCC-EE--EcCcccccchHHHHHHHHhCCC-CC
Confidence            4789999996 9999999988888999 89998888776554432 2222 22  2333  101   2333333 35 99


Q ss_pred             EEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +||.++|..             ......++.++..  +++|.++.
T Consensus       245 ~vid~~g~~-------------~~~~~~~~~l~~~--G~iv~~G~  274 (356)
T 1pl8_A          245 VTIECTGAE-------------ASIQAGIYATRSG--GTLVLVGL  274 (356)
T ss_dssp             EEEECSCCH-------------HHHHHHHHHSCTT--CEEEECSC
T ss_pred             EEEECCCCh-------------HHHHHHHHHhcCC--CEEEEEec
Confidence            999998731             1123334444433  58988765

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.73  E-value=0.0014  Score=56.10  Aligned_cols=41  Identities=29%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~  106 (301)
                      +.++|.|.|+ |.+|..++..|++.|++|++.+|+++..+..
T Consensus         3 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~   43 (283)
T 4e12_A            3 GITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAA   43 (283)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            3578999987 9999999999999999999999988765543

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.73  E-value=0.0071  Score=54.09  Aligned_cols=70  Identities=13%  Similarity=0.105  Sum_probs=53.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +.+|+|+|.|+ |.+|+.+++++.+.|++|++++.++......     .--..+..|..| .+.+.+.... +|+|..
T Consensus        12 ~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~-----~ad~~~~~~~~d-~~~l~~~~~~-~dvI~~   81 (389)
T 3q2o_A           12 LPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCAQ-----VADIEIVASYDD-LKAIQHLAEI-SDVVTY   81 (389)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTTT-----TCSEEEECCTTC-HHHHHHHHHT-CSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchHH-----hCCceEecCcCC-HHHHHHHHHh-CCEeee
Confidence            45899999997 8899999999999999999987665432211     111345678888 7888888888 998854

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=96.71  E-value=0.0018  Score=57.45  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=49.8

Q ss_pred             cC-CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch----hhhccccCCCCeEEEEc-cC--CCChHhHHHHh--cC
Q 022216           65 KQ-KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----AKTTLSKDNPSLQIVKA-DV--TEGSAKLSEAI--GD  134 (301)
Q Consensus        65 ~~-~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~-Dl--~~~~~~~~~~~--~~  134 (301)
                      .+ .+|||+||+|.+|...++.+...|++|+++.++.++    .+.+. +.+.. .++.. +.  .+..+.+.+..  .+
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~-~lGa~-~vi~~~~~~~~~~~~~i~~~t~~~~  243 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-ELGAT-QVITEDQNNSREFGPTIKEWIKQSG  243 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HHTCS-EEEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHH-hcCCe-EEEecCccchHHHHHHHHHHhhccC
Confidence            46 899999999999999998888889999998877654    22221 12221 12221 11  11123455444  22


Q ss_pred             -CCCEEEEccC
Q 022216          135 -DSEAVVCATG  144 (301)
Q Consensus       135 -~~d~Vi~~Ag  144 (301)
                       ++|+||.++|
T Consensus       244 ~g~Dvvid~~G  254 (364)
T 1gu7_A          244 GEAKLALNCVG  254 (364)
T ss_dssp             CCEEEEEESSC
T ss_pred             CCceEEEECCC
Confidence             4999999987

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.69  E-value=0.015  Score=51.56  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=55.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC---eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      ++|.|.||||++|..+++.|.++++   ++..+.-..+...... .......+  -++..      +.+.+ +|+||.|+
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~~~~~~--~~~~~------~~~~~-~Dvvf~a~   72 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKDQDITI--EETTE------TAFEG-VDIALFSA   72 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETTEEEEE--EECCT------TTTTT-CSEEEECS
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecCCCceE--eeCCH------HHhcC-CCEEEECC
Confidence            5899999999999999999988765   3444432211111111 01111222  22221      12467 99999998


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |.              ..+...+..+.+.|+ ++|-.|+..
T Consensus        73 ~~--------------~~s~~~a~~~~~~G~-~vIDlSa~~   98 (366)
T 3pwk_A           73 GS--------------STSAKYAPYAVKAGV-VVVDNTSYF   98 (366)
T ss_dssp             CH--------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred             Ch--------------HhHHHHHHHHHHCCC-EEEEcCCcc
Confidence            62              224556666677775 677777753

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.69  E-value=0.0017  Score=57.37  Aligned_cols=99  Identities=15%  Similarity=0.078  Sum_probs=63.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi  140 (301)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .+.. .+  .|..+  ..+.+.+...+ ++|+||
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-lGa~-~v--i~~~~~~~~~~v~~~t~g~g~D~v~  240 (352)
T 3fpc_A          166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE-YGAT-DI--INYKNGDIVEQILKATDGKGVDKVV  240 (352)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH-HTCC-EE--ECGGGSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCCc-eE--EcCCCcCHHHHHHHHcCCCCCCEEE
Confidence            4789999996 9999999988888898 79998887766554332 1111 12  23322  12455555544 599999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      .++|...             .....++.++..  ++++.++..
T Consensus       241 d~~g~~~-------------~~~~~~~~l~~~--G~~v~~G~~  268 (352)
T 3fpc_A          241 IAGGDVH-------------TFAQAVKMIKPG--SDIGNVNYL  268 (352)
T ss_dssp             ECSSCTT-------------HHHHHHHHEEEE--EEEEECCCC
T ss_pred             ECCCChH-------------HHHHHHHHHhcC--CEEEEeccc
Confidence            9987421             123344444443  588888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	1e-28
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	6e-18
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	3e-17
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	3e-17
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	2e-16
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	6e-15
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	8e-15
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	1e-13
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	2e-12
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	2e-12
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	3e-12
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	2e-11
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	8e-11
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	8e-11
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	6e-10
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	9e-09
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	4e-08
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	5e-08
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	6e-08
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	2e-07
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	3e-07
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	6e-07
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	7e-07
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	9e-07
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-06
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	1e-06
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	3e-06
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	5e-06
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	7e-06
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	7e-05
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	5e-04
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	0.001

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (266), Expect = 1e-28
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 16/214 (7%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           KKI + GATG +G   + Q +  G+ V   VRD  +                       A
Sbjct: 4   KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP-----SEGPRPAHVVVGDVLQA 58

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
              +      +AV+   G +       P  V + G  N+V A +  GV++ +  +S  + 
Sbjct: 59  ADVDKTVAGQDAVIVLLGTRNDLS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLL 115

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMET 246
                       +            ++  + +R+SG+ Y  + P  + ++P TG   +  
Sbjct: 116 WDPTKVPPRLQAVT--------DDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTL 167

Query: 247 EDTLYEGTISRDQVAEVAVEALLHPESSYKVVEI 280
           +       IS+  +    +  L   E        
Sbjct: 168 DGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYP 201

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.5 bits (194), Expect = 6e-18
 Identities = 52/257 (20%), Positives = 93/257 (36%), Gaps = 31/257 (12%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS- 125
             + V GA+G +G+ + ++L           + L ++     K      +   D+T+   
Sbjct: 4   PTVLVTGASGRTGQIVYKKLKEGSDKFV--AKGLVRSAQGKEKIGGEADVFIGDITDADS 61

Query: 126 --------------AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK 171
                               +    +            D   P +VD  G  N ++A + 
Sbjct: 62  INPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV 121

Query: 172 RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG 231
            GV   +++ S+                 L             EQY+  SG  YTIIR G
Sbjct: 122 AGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKA-------EQYLADSGTPYTIIRAG 174

Query: 232 GLRNEPPTG-NIIMETEDTLYE---GTISRDQVAEVAVEALLHPESSYKVVEIISRVDAP 287
           GL ++      +++  +D L +    T+ R  VAEV ++ALL  E+  K  ++ S+ +  
Sbjct: 175 GLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGT 234

Query: 288 KRSYED---LFGSIKQR 301
               +D   LF  +  R
Sbjct: 235 STPTKDFKALFSQVTSR 251

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 78.3 bits (191), Expect = 3e-17
 Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 26/249 (10%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           K+ ++ + G TG  GKRIV   ++ G       R    +     +     + + A + E 
Sbjct: 2   KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 61

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
           S              +                      + LVEA ++ G  +  L S   
Sbjct: 62  SL----DDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFG 117

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG------------- 231
           ++   M   L P  I         I K +  + I  + I YT +                
Sbjct: 118 MDPDIMEHALQPGSIT-------FIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQL 170

Query: 232 GLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSY 291
                PP   +++  +  +    +  D V    ++++  P++  K + I         S 
Sbjct: 171 DGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRP--PMNILSQ 228

Query: 292 EDLFGSIKQ 300
           +++    ++
Sbjct: 229 KEVIQIWER 237

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 78.5 bits (192), Expect = 3e-17
 Identities = 32/251 (12%), Positives = 67/251 (26%), Gaps = 30/251 (11%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           ++K I V GATG  G  ++    A G  V+A V  L        +  P++ + +  +   
Sbjct: 2   QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN 61

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL 184
              +         A +  T                    +L +A ++ G  +  + SS+ 
Sbjct: 62  VPLMDTLFEGAHLAFINTTSQAGDE---------IAIGKDLADAAKRAGTIQHYIYSSMP 112

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI--NYTIIRPGGLRNEPPTGN- 241
            +         P +         +        ++       N+T +     + E      
Sbjct: 113 DHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGT 172

Query: 242 ---IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYK---------------VVEIISR 283
                    D       +   V    ++        +                V    SR
Sbjct: 173 FEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSR 232

Query: 284 VDAPKRSYEDL 294
               + +Y  +
Sbjct: 233 ALNRRVTYVQV 243

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 76.0 bits (186), Expect = 2e-16
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 14/178 (7%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAG--VRDLDKAKTTLSKDN-------PSLQIVK 118
           ++ V G  G  G   V QLLA  +       V  LD      ++ N       P L+ V 
Sbjct: 2   RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61

Query: 119 ADVTEGSAKLSEAIGDDS--EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNR 176
            D+ +      E  G D+       +   +         + +  GT  L++     GV R
Sbjct: 62  GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121

Query: 177 FILISSILVNGAAMGQILNPAYIF--LNVFGLT-LIAKLQAEQYIRKSGINYTIIRPG 231
            + +S+  V G+        +      + +  +   + L A  Y R  G++  I R  
Sbjct: 122 VVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCC 179

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 6e-15
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 23/193 (11%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEG 124
           K+I + G  G  G  + ++L+  G  V          K  +     + + +++  DV E 
Sbjct: 2   KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 61

Query: 125 SAKLSEAIGDDSEAVVCATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVNRFILIS 181
                + I         A+   P   ++ P    K +  GT+N++   ++ G  R +L S
Sbjct: 62  LYIEVDQI------YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 114

Query: 182 SILVNGAAMGQILNPAYIF-------LNVFGLT-LIAKLQAEQYIRKSGINYTIIRPG-- 231
           +  V G       +  Y            +     +A+     Y+++ G+   + R    
Sbjct: 115 TSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNT 174

Query: 232 -GLRNEPPTGNII 243
            G R     G ++
Sbjct: 175 FGPRMHMNDGRVV 187

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 71.8 bits (175), Expect = 8e-15
 Identities = 37/183 (20%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD--------LDKAKTTLSKDNPSLQIVK 118
           K   + G TG  G  + E LL KG+ V    R         +D         NP   +  
Sbjct: 2   KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61

Query: 119 ADVTEGSAKLSEAIGDDSEAVVCATGFQ-PGWDLFAP---WKVDNFGTVNLVEACRKRGV 174
            D+++ S           + V              +P     VD  GT+ L+EA R  G+
Sbjct: 62  GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121

Query: 175 N---RFILISSILVNGAAMGQILNPAYIF--LNVFGLT-LIAKLQAEQYIRKSGINYTII 228
               RF   S+  + G            F   + + +  L A      Y    G+     
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNG 181

Query: 229 RPG 231
              
Sbjct: 182 ILF 184

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 68.0 bits (165), Expect = 1e-13
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 20/173 (11%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           +++F+AG  G  G  I  QL  +G      +R  D+    L           ++  +   
Sbjct: 3   QRVFIAGHRGMVGSAIRRQLEQRGDVE-LVLRTRDELN--LLDSRAVHDFFASERIDQVY 59

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
             +  +G           F            +     N++ A  +  VN+ + + S  + 
Sbjct: 60  LAAAKVGGIVANNTYPADF---------IYQNMMIESNIIHAAHQNDVNKLLFLGSSCIY 110

Query: 187 GAAMGQILN-------PAYIFLNVFGLT-LIAKLQAEQYIRKSGINYTIIRPG 231
                Q +                + +  +      E Y R+ G +Y  + P 
Sbjct: 111 PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPT 163

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 64.8 bits (157), Expect = 2e-12
 Identities = 34/197 (17%), Positives = 59/197 (29%), Gaps = 32/197 (16%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTE 123
           KI + G  G  G  +V  ++         +  L  A    S     ++       AD+ +
Sbjct: 2   KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61

Query: 124 GSAKLSEAIGDDSEAVV--CATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVN--- 175
            SA+++          V   A        +  P    + +  GT  L+E  RK       
Sbjct: 62  -SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120

Query: 176 ------RFILISSILVNGAAMGQILNPAYIFLNVFGLTL---------IAKLQAEQ---- 216
                 RF  IS+  V G           + L +F  T           +K  ++     
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180

Query: 217 YIRKSGINYTIIRPGGL 233
           + R  G+   +      
Sbjct: 181 WRRTYGLPTIVTNCSNN 197

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 64.2 bits (155), Expect = 2e-12
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 13/189 (6%)

Query: 56  EEAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKA-------GVRDLDKAKT-TL 107
           EE  + +  + K   + G  G  G  ++E LL     V           R+LD+ ++   
Sbjct: 6   EELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVS 65

Query: 108 SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDN--FGTVNL 165
            K   + + ++ D+       +   G D      A G  P               G +N+
Sbjct: 66  EKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNM 125

Query: 166 VEACRKRGVNRFILISSILVNGAAMGQILNPAYIF--LNVFGL-TLIAKLQAEQYIRKSG 222
           + A R   V  F   +S    G   G       I   L+ + +   + +L A+ + R  G
Sbjct: 126 LIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYG 185

Query: 223 INYTIIRPG 231
            +   +R  
Sbjct: 186 FSTIGLRYF 194

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 64.2 bits (155), Expect = 3e-12
 Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 12/186 (6%)

Query: 57  EAEENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQI 116
           E E+    +  KI + GA G     I  +L  +G  V            T         +
Sbjct: 6   EREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVI-ASDWKKNEHMTEDMFCDEFHL 64

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFG-TVNLVEACRKRGVN 175
           V   V E   K++E +           G        +    +N   + N++EA R  G+ 
Sbjct: 65  VDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK 124

Query: 176 RFILISSILVNGAAMGQILNPAYIF---------LNVFGLT-LIAKLQAEQYIRKSGINY 225
           RF   SS  +             +           + FGL  L  +   + Y +  GI  
Sbjct: 125 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIEC 184

Query: 226 TIIRPG 231
            I R  
Sbjct: 185 RIGRFH 190

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 2e-11
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 26/188 (13%)

Query: 67  KKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT---------TLSKDNPSLQI 116
           + +  + G TG  G  + E LL KG+ V   VR      T           +    ++++
Sbjct: 1   RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKL 60

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGF----QPGWDLFAPWKVDNFGTVNLVEACRKR 172
              D+T+ +  +          +                     VD  GT+ L++A +  
Sbjct: 61  HYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC 120

Query: 173 GVN---RFILISSILVNGAAMGQILNPAYIF--LNVFGLTLIAKLQAEQ----YIRKSGI 223
           G+    +F   S+  + G            F   + +G    AKL A      +     +
Sbjct: 121 GLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYG---AAKLYAYWIVVNFREAYNL 177

Query: 224 NYTIIRPG 231
                   
Sbjct: 178 FAVNGILF 185

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 8e-11
 Identities = 36/233 (15%), Positives = 77/233 (33%), Gaps = 26/233 (11%)

Query: 59  EENVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVK 118
            E+  ++ K +F+ GA+G +G+ +++++L +G   K  V  + + K T  ++       +
Sbjct: 7   REDFRMQNKSVFILGASGETGRVLLKEILEQGLFSK--VTLIGRRKLTFDEEAYKNVNQE 64

Query: 119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFI 178
               E     + A         C    +         +VD    +   E  +  G   F 
Sbjct: 65  VVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN 124

Query: 179 LISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG---GLRN 235
           L+SS   + ++    L                     +        Y++ RPG     R 
Sbjct: 125 LLSSKGADKSSNFLYLQVKG-------------EVEAKVEELKFDRYSVFRPGVLLCDRQ 171

Query: 236 EPPTGNIIMETEDTLYEG------TISRDQVAEVAVEALLHPESSYKVVEIIS 282
           E   G  ++               ++    V    +  ++ P    K +E++ 
Sbjct: 172 ESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD--KQMELLE 222

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 59.6 bits (143), Expect = 8e-11
 Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 10/182 (5%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTE 123
           ++ V G +G  G     QLL  G  V       +  ++ L             V+ D+  
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61

Query: 124 GSAKLSEAIGDDSEAVVCATGFQPGWDLF-----APWKVDNFGTVNLVEACRKRGVNRFI 178
             A ++E + D +   V                   +  +  GT+ L+ A R   V  FI
Sbjct: 62  -EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120

Query: 179 LISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPGGLRNEPP 238
             SS  V G         ++           +KL  EQ +              LR   P
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180

Query: 239 TG 240
            G
Sbjct: 181 VG 182

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 57.1 bits (136), Expect = 6e-10
 Identities = 28/129 (21%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-----LSKDNPSLQIVKA 119
           +   + V GA G     +VEQLL  G+ V+   R   K                   V  
Sbjct: 10  EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69

Query: 120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEAC-RKRGVNRFI 178
           D+ +      E I   +     A+                 GT+N + A      V RF+
Sbjct: 70  DMLK-QGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFV 128

Query: 179 LISSILVNG 187
           L SS +   
Sbjct: 129 LTSSTVSAL 137

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 53.3 bits (126), Expect = 9e-09
 Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 31/229 (13%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN-PSLQIVKADVTEGS 125
            +I + GATG  G+ + +  L  G      VR+   +  +       S +   A++    
Sbjct: 4   SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVH-- 61

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPW-KVDNFGTVNLVEACRKRGVNRFILISSIL 184
                  G   +        +    + +    +     VN+++A ++ G  +    S   
Sbjct: 62  -------GSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFG 114

Query: 185 VNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG-----GLRNEPPT 239
            +   +  +     +F            +  + I   GI YT +         LR+    
Sbjct: 115 NDVDNVHAVEPAKSVFEVKA--------KVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQA 166

Query: 240 GNIIME-------TEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEII 281
           G             +       +  + +    ++A+  P +  K + + 
Sbjct: 167 GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLR 215

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 51.5 bits (122), Expect = 4e-08
 Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN------PSLQIVK 118
           + K I V G  G  G   V  +      V   V  LDK     +K N        +++V 
Sbjct: 1   QFKNIIVTGGAGFIGSNFVHYVYNNHPDVH--VTVLDKLTYAGNKANLEAILGDRVELVV 58

Query: 119 ADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAP---WKVDNFGTVNLVEACRKRGVN 175
            D+ + +  + +        V  A        L  P      +  GT  L+EA RK  + 
Sbjct: 59  GDIAD-AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI- 116

Query: 176 RFILISSILVNGAAMGQILNPAYIFLNVFGLTL-----------IAKLQAEQ----YIRK 220
           RF  +S+  V G    +   P +        T              K  ++     ++R 
Sbjct: 117 RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRS 176

Query: 221 SGINYTIIRPG 231
            G+  TI    
Sbjct: 177 FGVKATISNCS 187

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.2 bits (121), Expect = 5e-08
 Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 11/176 (6%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD---NPSLQIVKADVTE 123
           +   V G TG  G  + + LL KG+ V   V           ++      +Q    D+ +
Sbjct: 1   RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD 60

Query: 124 GSAKLSEAIGDDSEAVVCATGFQPGWDLFAPW----KVDNFGTVNLVEACRKRG-VNRFI 178
             +     I    + V            +        VD  G  +L+EA R+     RF 
Sbjct: 61  ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 120

Query: 179 LISSILVNGAAMGQIL--NPAYIFLNVFGLT-LIAKLQAEQYIRKSGINYTIIRPG 231
             S+  + G    +    N  +   + +G+  L        Y    G++ +     
Sbjct: 121 QASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILF 176

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 6e-08
 Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 18/187 (9%)

Query: 64  VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVK 118
           V  K   V GA    G+   E LL KG  V     +L+      +      +      ++
Sbjct: 1   VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 60

Query: 119 ADVT--EGSAKLSEAIGDDSEAV---VCATGFQPGWDLFAPWKVDNFGTVNLVEAC---- 169
            DV   +        + D    +   V   G     +     +++    ++         
Sbjct: 61  CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYM 120

Query: 170 RKRGVNRFILISSILVNGAAMGQILNPAYIFLN--VFGLTLIAKLQAEQYIRKSGINYTI 227
            K+      +I ++      M     P Y      + G T  A L A   +  SG+    
Sbjct: 121 SKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAAN--LMNSGVRLNA 178

Query: 228 IRPGGLR 234
           I PG + 
Sbjct: 179 ICPGFVN 185

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN-------PSLQIVKAD 120
           K+ + G  G  G  +    L++G  +       D      + DN        + + V  D
Sbjct: 2   KLLITGGCGFLGSNLASFALSQGIDLIV----FDNLSRKGATDNLHWLSSLGNFEFVHGD 57

Query: 121 VTEGSAKLSEAIGDDSEAVVCATGFQPGW----DLFAPWKVDNFGTVNLVEACRKRGVNR 176
           +   +           ++     G         +    ++++  GT+NL+EA R+   N 
Sbjct: 58  IRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNC 117

Query: 177 FILISS 182
            I+ SS
Sbjct: 118 NIIYSS 123

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 48.8 bits (114), Expect = 3e-07
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGS 125
           ++ + G  G  G  + E+LL +       V  LD     +S+  ++P    V+ D++  S
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYE---VYGLDIGSDAISRFLNHPHFHFVEGDISIHS 58

Query: 126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPW 155
             +   +      +       P      P 
Sbjct: 59  EWIEYHVKKCDVVLPLVAIATPIEYTRNPL 88

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 6e-07
 Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 19/194 (9%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-----DKAKTTLSKDNPSLQIVKADV 121
           K + V G  G  G   V +L+  G+       +L     D            +   + D+
Sbjct: 2   KIVLVTGGAGYIGSHTVVELIENGYDCV-VADNLSNSTYDSVARLEVLTKHHIPFYEVDL 60

Query: 122 TEGSA--KLSEAIGDDSEAVVCATGFQPGWDLFAP--WKVDNFGTVNLVEACRKRGVNRF 177
            +     K+ +    DS                    +  +  GTV L+E  ++  V++F
Sbjct: 61  CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 120

Query: 178 ILISSILVNGAAMGQILNPAYIFLNVFGLTL---IAKLQAEQYIR------KSGINYTII 228
           +  SS  V G A               G T      K   E  +       K    + I+
Sbjct: 121 VFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAIL 180

Query: 229 RPGGLRNEPPTGNI 242
           R        P+G I
Sbjct: 181 RYFNPIGAHPSGLI 194

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 7e-07
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 39/269 (14%)

Query: 67  KKIFVAGATGSSGKRIVEQLL---AKGFAVKAGVRDLDK------AKTTLSKDNPSLQIV 117
             + + G +   G  +  +L    ++ F V A +RDL        A   L+    SL+ +
Sbjct: 3   TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62

Query: 118 KADVTEGSA----------KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDN-FGTVNLV 166
           + DV +  +             + +  ++   +       G D  A     N  GTV ++
Sbjct: 63  QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122

Query: 167 EAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSG 222
           +A     ++RG  R ++  S+   G  MG   N  Y     F L  + +  A       G
Sbjct: 123 QAFLPDMKRRGSGRVLVTGSV---GGLMGLPFNDVYCASK-FALEGLCESLAVLL-LPFG 177

Query: 223 INYTIIRPGGLRNE-------PPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSY 275
           ++ ++I  G +           P   +      T +          +V  EA  +PE   
Sbjct: 178 VHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVA 237

Query: 276 KVVEIISRVDAPKRSY---EDLFGSIKQR 301
           +V     R   P   Y   E     ++ R
Sbjct: 238 EVFLTALRAPKPTLRYFTTERFLPLLRMR 266

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.8 bits (110), Expect = 9e-07
 Identities = 33/248 (13%), Positives = 67/248 (27%), Gaps = 50/248 (20%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVK--AGVRDLDKAKTTLSKDNPSLQIVKADVT 122
               + V GA    G  +V+QL+         A  RD++KA    S  +  + ++   VT
Sbjct: 2   SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61

Query: 123 EGSA------KLSEAIGDDS-EAVVCATGFQPGWDLFAPWKVDNF---------GTVNLV 166
              +      K+ E +G D    ++   G    +                      V L 
Sbjct: 62  CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121

Query: 167 EAC----RKRGVNRFILISSILV---------------NGAAMGQILNPAYIFLNVFGLT 207
           +      +           S+                 N +   Q    AY         
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINM 181

Query: 208 LIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEA 267
               L  +  ++   +      PG            ++T        ++ +Q     + +
Sbjct: 182 FGRTLAVD--LKDDNVLVVNFCPG-----------WVQTNLGGKNAALTVEQSTAELISS 228

Query: 268 LLHPESSY 275
               ++S+
Sbjct: 229 FNKLDNSH 236

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 19/195 (9%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAV----------KAGVRDLDKAKTTLSKDNPSLQI 116
           +K+ V G  G  G   V +LL  G+            + G    +  +        S++ 
Sbjct: 3   EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62

Query: 117 VKADVTEGSAKLSEAIGDDSEAVVCATGF-QPGWDLFAPW---KVDNFGTVNLVEACRKR 172
            + D+ +  A           AV+   G    G  +  P    +V+  GT+ L+E  +  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK-----SGINYTI 227
           GV   +  SS  V G      L+ A+           +K   E+ IR         N  +
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVL 182

Query: 228 IRPGGLRNEPPTGNI 242
           +R         +G I
Sbjct: 183 LRYFNPTGAHASGCI 197

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL--SKDNPSLQIVKADVT 122
           + K++FV G TG  G  +   L   G  VK          +    ++    +Q    D+ 
Sbjct: 7   QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 66

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 32/219 (14%), Positives = 59/219 (26%), Gaps = 26/219 (11%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
           K++ +AGATG +G+ +++++L++    K              K       +   V   + 
Sbjct: 3   KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA--------RKALAEHPRLDNPVGPLAE 54

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVN 186
            L +  G    A  C             ++  +F     V         R          
Sbjct: 55  LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARH--------- 105

Query: 187 GAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG---GLRNEPPTGNII 243
                 +        +      +     +    +     TI RP    G R E     I+
Sbjct: 106 ---YLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEFRLAEIL 162

Query: 244 METEDTLYEG---TISRDQVAEVAVEALLHPESSYKVVE 279
                 +  G    I    +A       L      + VE
Sbjct: 163 AAPIARILPGKYHGIEACDLARALWRLALEEGKGVRFVE 201

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.1 bits (105), Expect = 5e-06
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 22/186 (11%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---------LSKDNPSLQIV 117
           K   + G TG  G  + E LL KG+ V   +R      T           + +   +++ 
Sbjct: 2   KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61

Query: 118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGW-----DLFAPWKVDNFGTVNLVEACRKR 172
            AD+T+ ++ L   I       V     Q               V   G + L+EA R  
Sbjct: 62  YADLTD-ASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH 120

Query: 173 GVNRFILISSILVNGAAMGQILNPAYI---FLNVFGLTLIAKLQAEQYI----RKSGINY 225
            ++    +       + M     P        +       +K  A  Y        G+  
Sbjct: 121 TIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFA 180

Query: 226 TIIRPG 231
                 
Sbjct: 181 CNGILF 186

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 26/217 (11%), Positives = 54/217 (24%), Gaps = 12/217 (5%)

Query: 67  KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA 126
            K+ V G  G+ G  I+E     G+ V       +    +    + +    + + +    
Sbjct: 3   GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQ 62

Query: 127 KLSEAIGDDSEAVVCATGFQPGWDLF---APWKVDNFGTVNLVEACRKRGVNRFILISSI 183
             S   G   + V C  G   G            D     ++  +     +    L    
Sbjct: 63  TASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGG 122

Query: 184 LVNGAAMGQILNPAYIFLNV----FGLTLIAKLQA-EQYIRKSGINYTIIRPGGLRNEPP 238
           L+        + P    +        +  +    A +            I P  L     
Sbjct: 123 LLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLD---- 178

Query: 239 TGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSY 275
           T        +  +        ++E  ++      S  
Sbjct: 179 TPMNRKWMPNADHSSWTPLSFISEHLLKWTTETSSRP 215

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 23/224 (10%)

Query: 65  KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG 124
           + +++ V G  G+ G R V+   A+ + V A +  ++  + + S              + 
Sbjct: 1   EARRVLVYGGRGALGSRCVQAFRARNWWV-ASIDVVENEEASASVIVKMTDSFTEQADQV 59

Query: 125 SAKLSEAIGDDS-EAVVCATGFQPGWDLFAPW---------KVDNFGTVNLVEA--CRKR 172
           +A++ + +GD   +A++C  G   G +  +           K   + +           +
Sbjct: 60  TAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLK 119

Query: 173 GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY-IRKSGINYTIIRPG 231
                 L  +        G I            +  + +  A +     SG     + P 
Sbjct: 120 EGGLLTLAGAKAALDGTPGMIGYGMAK----GAVHQLCQSLAGKNSGMPSGAAAIAVLPV 175

Query: 232 GLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSY 275
            L     T        +  +      + + E      +      
Sbjct: 176 TLD----TPMNRKSMPEADFSSWTPLEFLVETFH-DWITGNKRP 214

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 68  KIFVAGATGSSGKRIVEQLLAKGFAV------KAGVRDLDKAKTTLSKDNP 112
           KI + GA G  G+ I +QL  K   V         + ++       ++  P
Sbjct: 3   KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKP 53

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 67 KKIFVAGATGSSGKRIVEQLLAKGFAV 93
           ++ V G  G  G      L  K + V
Sbjct: 2  SRVMVIGGDGYCGWATALHLSKKNYEV 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	100.0
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	100.0
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.98
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.98
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.98
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.98
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.97
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.97
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.97
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.97
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.97
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.97
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.96
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.96
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.96
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.96
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.96
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.96
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.96
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.96
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.96
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.96
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.96
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.96
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.96
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.96
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.96
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.96
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.96
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.96
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.96
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.96
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.96
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.96
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.96
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.96
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.95
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.95
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.95
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.95
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.95
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.95
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.95
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.95
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.95
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.95
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.95
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.95
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.95
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.95
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.94
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.94
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.94
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.94
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.94
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.94
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.94
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.94
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.94
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.94
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.94
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.94
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.93
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.93
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.93
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.93
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.93
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.93
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.93
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.93
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.92
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.92
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.92
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.92
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.91
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.91
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.91
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.91
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.91
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.91
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.9
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.89
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.88
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.88
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.88
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.88
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.87
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.86
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.85
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.85
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.83
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.83
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.82
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.81
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.8
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.79
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.58
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.6
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.55
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.35
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.34
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.33
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.27
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	98.21
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.15
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.15
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.08
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.08
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.04
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.98
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.98
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.97
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.96
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.93
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.9
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.88
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.84
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.84
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.84
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.82
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.81
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.8
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.77
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.77
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.77
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.76
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.74
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.71
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.7
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.7
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.69
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.68
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.67
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.65
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.65
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.62
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.62
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.61
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.59
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.58
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.57
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.5
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.5
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.46
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.4
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.4
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.39
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.36
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.35
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.35
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.32
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.26
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.24
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.2
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.09
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.09
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.05
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.03
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.01
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.97
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.87
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.85
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.82
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.82
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.79
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.72
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.72
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.72
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.71
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.7
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.69
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.68
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.67
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.62
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.6
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.56
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.53
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.5
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.49
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.48
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.46
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.45
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.44
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.43
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.43
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.4
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.37
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.36
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.31
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.27
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.24
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.16
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.15
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.09
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.08
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.07
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.06
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.04
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.03
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.01
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.97
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.97
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.95
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.94
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.92
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.85
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.84
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.78
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.76
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.75
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.75
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.74
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.69
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.67
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.65
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.65
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.62
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.58
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.58
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.49
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.48
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.44
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.39
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.34
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.32
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.31
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.3
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.26
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	95.26
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.14
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.03
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.95
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.8
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.76
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.74
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.55
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.53
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.44
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.44
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.15
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.13
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.86
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.85
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.76
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.72
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.37
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.26
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.15
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.0
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.97
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.88
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.83
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	92.59
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.44
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	92.25
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	92.09
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.08
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.99
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.79
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.73
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.72
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.58
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	91.39
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.32
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.27
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.08
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	91.05
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.0
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.89
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	90.84
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.74
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	90.42
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.4
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.13
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.01
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.89
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.83
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.51
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.45
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.34
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	89.2
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	88.57
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	88.45
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	88.41
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	88.28
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.18
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.02
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.91
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	87.76
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	87.47
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	86.9
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	86.35
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	86.27
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	86.12
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.1
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	86.05
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	85.96
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	85.94
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	85.77
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	85.74
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.68
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	85.67
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	85.58
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.53
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	85.35
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.25
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	85.16
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.02
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	84.93
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.54
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.23
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	84.13
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.84
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	83.8
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	83.74
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	83.44
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	83.23
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	83.1
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.1
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	82.87
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	82.6
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.55
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	82.39
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.22
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	82.14
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	82.09
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	82.04
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.76
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.03
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	80.84
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	80.58
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.4
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	80.17

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-34  Score=258.62  Aligned_cols=227  Identities=17%  Similarity=0.113  Sum_probs=176.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-----hhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC-CCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD-DSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-----~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d  137 (301)
                      |+|||||||||||++++++|+++|++|++++|....     .+.+.   .....+++++++|++| .+.+.+.+++ ++|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d   80 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSD-TSNLTRILREVQPD   80 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSC-HHHHHHHHHHHCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCC-HHHHHHHHhccCCC
Confidence            789999999999999999999999999999986532     12111   1134689999999999 8999999986 579


Q ss_pred             EEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCC---CEEEEecccccccccCCCCCCcchhhcchhhHHHHH
Q 022216          138 AVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIA  210 (301)
Q Consensus       138 ~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~---~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~s  210 (301)
                      +|||+|+....    .++..++++|+.||.+|+++|++.++   .|||++||..+||.....+..|+. +..|.+.|+.+
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~-~~~P~~~Y~~s  159 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETT-PFYPRSPYAVA  159 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTS-CCCCCSHHHHH
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCC-CCCCCChHHHH
Confidence            99999986542    34456789999999999999998764   479999999999876666655554 34567899999


Q ss_pred             HHHHHHHHH----HcCCcEEEEecCcccCCCCCCc-------------------eeeccccccccCCCCHHHHHHHHHHH
Q 022216          211 KLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN-------------------IIMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       211 K~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~-------------------~~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      |.++|++++    +++++++++||++++||.....                   ....+......++++++|++++++.+
T Consensus       160 K~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~  239 (357)
T d1db3a_         160 KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMM  239 (357)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHH
Confidence            999998775    3699999999999999853322                   11112233334689999999999888


Q ss_pred             hcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +..+  .++.||++++   +.+|++|+++.+.+
T Consensus       240 ~~~~--~~~~yni~sg---~~~s~~~~~~~~~~  267 (357)
T d1db3a_         240 LQQE--QPEDFVIATG---VQYSVRQFVEMAAA  267 (357)
T ss_dssp             TSSS--SCCCEEECCC---CCEEHHHHHHHHHH
T ss_pred             HhCC--CCCeEEECCC---CceehHHHHHHHHH
Confidence            8765  4678999996   99999999998764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-32  Score=226.27  Aligned_cols=203  Identities=21%  Similarity=0.292  Sum_probs=170.7

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |.+|+|+||||||+||++++++|+++|++|+++.|++++.+...   ..+++++.+|++| .+++.+++.+ +|+|||++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~---~~~~~~~~gD~~d-~~~l~~al~~-~d~vi~~~   75 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG---PRPAHVVVGDVLQ-AADVDKTVAG-QDAVIVLL   75 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS---CCCSEEEESCTTS-HHHHHHHHTT-CSEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccc---ccccccccccccc-hhhHHHHhcC-CCEEEEEe
Confidence            45899999999999999999999999999999999988866543   4789999999999 8999999999 99999999


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCC
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGI  223 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i  223 (301)
                      |.....+   ..+++..++.++++++++++++|||++||..+|......+        .....|...|..+|+++++.++
T Consensus        76 g~~~~~~---~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~--------~~~~~~~~~~~~~e~~l~~~~~  144 (205)
T d1hdoa_          76 GTRNDLS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP--------PRLQAVTDDHIRMHKVLRESGL  144 (205)
T ss_dssp             CCTTCCS---CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSC--------GGGHHHHHHHHHHHHHHHHTCS
T ss_pred             ccCCchh---hhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcccc--------ccccccchHHHHHHHHHHhcCC
Confidence            8754433   3467899999999999999999999999998775443221        2245678899999999999999


Q ss_pred             cEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeec
Q 022216          224 NYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       224 ~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~  282 (301)
                      +|++|||+.+.+....+.............+++++|+|++++.+|+++...++++.+..
T Consensus       145 ~~tiirp~~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~~~~~s~  203 (205)
T d1hdoa_         145 KYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSH  203 (205)
T ss_dssp             EEEEECCSEEECCCCCSCCEEESSSCSSCSEEEHHHHHHHHHHTTSCSTTTTCEEEEEC
T ss_pred             ceEEEecceecCCCCcccEEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCCCCEEEecCC
Confidence            99999999999876666655555555555789999999999999999987788887765

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.2e-33  Score=242.33  Aligned_cols=222  Identities=15%  Similarity=0.165  Sum_probs=168.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .|+||||||+||||++++++|+++|++|++++|......+...  ....++.....|+.+      ..+.+ +|+|||+|
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~~-~d~VihlA   73 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE------PLYIE-VDQIYHLA   73 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTS------CCCCC-CSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHH------HHHcC-CCEEEECc
Confidence            3799999999999999999999999999999874332222111  123455566655554      34556 99999999


Q ss_pred             CCCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcch----hhcchhhHHHHHHHHHH
Q 022216          144 GFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAY----IFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       144 g~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~----~~~~~~~~y~~sK~~~e  215 (301)
                      +...    ..++...+++|+.|+.++++++++.++ |+||+||.++|+.....+..+.+    .+..|.+.|+.+|.++|
T Consensus        74 a~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E  152 (312)
T d2b69a1          74 SPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAE  152 (312)
T ss_dssp             SCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHH
T ss_pred             ccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHH
Confidence            8654    245566789999999999999999886 89999999999876555443332    24467789999999999


Q ss_pred             HHHH----HcCCcEEEEecCcccCCCCCCc-----------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          216 QYIR----KSGINYTIIRPGGLRNEPPTGN-----------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       216 ~~~~----~~~i~~~~irpg~v~~~~~~~~-----------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      .+++    .+|++++++||+.++||.....                 +.+.+......+++|++|++++++.++...  .
T Consensus       153 ~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~--~  230 (312)
T d2b69a1         153 TMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN--V  230 (312)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS--C
T ss_pred             HHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhc--c
Confidence            8774    4699999999999999864322                 112222233346899999999998888655  3


Q ss_pred             CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          275 YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       275 ~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +..||++++   +.+++.|+++.+++
T Consensus       231 ~~~~n~~~~---~~~~~~~~~~~i~~  253 (312)
T d2b69a1         231 SSPVNLGNP---EEHTILEFAQLIKN  253 (312)
T ss_dssp             CSCEEESCC---CEEEHHHHHHHHHH
T ss_pred             CCceEecCC---cccchhhHHHHHHH
Confidence            567999986   99999999998865

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.98  E-value=2.6e-32  Score=243.84  Aligned_cols=229  Identities=15%  Similarity=0.099  Sum_probs=176.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh---hhccc-cCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA---KTTLS-KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~---~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      |+||||||+||||++++++|+++|++|++..++....   ..+.. ....+++++++|++| .+.+.+.+.+ ++|+|||
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD-SAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC-HHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCC-HHHHHHHHHhCCCCEEEE
Confidence            6899999999999999999999999866555443211   11111 134689999999999 8888888875 6999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcC---------CCEEEEecccccccccCCCCC---------Ccchh
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRG---------VNRFILISSILVNGAAMGQIL---------NPAYI  199 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~---------~~~iV~~SS~~~~~~~~~~~~---------~~~~~  199 (301)
                      +|+....    .++..++++|+.|+.+++++|++.+         +++||++||..+||.....+.         ..+..
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~  159 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT  159 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence            9986542    3567788999999999999997653         359999999999986653221         12233


Q ss_pred             hcchhhHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQV  260 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dv  260 (301)
                      +..|.+.|+.+|.++|.++.    +++++++++||++++||.....               +.+.+......+|++++|+
T Consensus       160 ~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~  239 (361)
T d1kewa_         160 AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDH  239 (361)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHHH
Confidence            45677889999999998875    4799999999999999864321               1222223333468999999


Q ss_pred             HHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          261 AEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       261 a~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      |++++.++..+. .+.+||++++   +..++.|+++.+.+
T Consensus       240 a~ai~~~~~~~~-~~~~~Ni~s~---~~~s~~~~~~~i~~  275 (361)
T d1kewa_         240 ARALHMVVTEGK-AGETYNIGGH---NEKKNLDVVFTICD  275 (361)
T ss_dssp             HHHHHHHHHHCC-TTCEEEECCC---CEEEHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC-CCCeEEECCC---CCcchHHHHhHhhh
Confidence            999999888775 4679999985   99999999998864

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=6.2e-32  Score=239.20  Aligned_cols=230  Identities=18%  Similarity=0.188  Sum_probs=176.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh----ccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT----TLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      |+||||||+||||+++++.|+++|++|++++|.......    .......+++++++|++| .+.+.++++. ++|+|||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~~~d~ViH   79 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC-HHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC-HHHHHHHHhccCCCEEEE
Confidence            679999999999999999999999999999874332211    111134689999999999 8999999884 4999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      +|+....    .++...+++|+.|+.+++++|++.+++++|++||..+|+.....+..+......+...|+.+|.++|++
T Consensus        80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~  159 (338)
T d1udca_          80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQI  159 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHHH
T ss_pred             CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHHHHhhhhHH
Confidence            9986531    345677899999999999999999999999999999998766555445555556778899999999987


Q ss_pred             HHH-----cCCcEEEEecCcccCCCCCCce--------------------------eecc------ccccccCCCCHHHH
Q 022216          218 IRK-----SGINYTIIRPGGLRNEPPTGNI--------------------------IMET------EDTLYEGTISRDQV  260 (301)
Q Consensus       218 ~~~-----~~i~~~~irpg~v~~~~~~~~~--------------------------~~~~------~~~~~~~~v~~~Dv  260 (301)
                      +..     .+++++++||++++|+......                          ...+      ......++++++|+
T Consensus       160 ~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~D~  239 (338)
T d1udca_         160 LTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL  239 (338)
T ss_dssp             HHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHHHH
T ss_pred             HHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEeeh
Confidence            753     5899999999999997532110                          0000      01222457899999


Q ss_pred             HHHHHHHhc--CCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          261 AEVAVEALL--HPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       261 a~~~~~~l~--~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.++.....  .....+++||+++.   +.+++.|+++.|.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~i~Ni~~~---~~~si~e~~~~i~~  278 (338)
T d1udca_         240 ADGHVVAMEKLANKPGVHIYNLGAG---VGNSVLDVVNAFSK  278 (338)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEESCS---SCEEHHHHHHHHHH
T ss_pred             hhhccccccccccccCcceeeecCC---CCCcHHHHHHHHHH
Confidence            987755443  33345678999885   89999999998864

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.98  E-value=5.8e-32  Score=237.74  Aligned_cols=227  Identities=16%  Similarity=0.132  Sum_probs=178.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEE------EEEeCC--chhhhc-cccCCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVK------AGVRDL--DKAKTT-LSKDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~------~~~r~~--~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |+||||||+|+||+++++.|+++|++|.      .+++..  ...... ......++.++.+|+++ .......... +|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~-~d   78 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRD-AGLLARELRG-VD   78 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTC-HHHHHHHTTT-CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEecccc-chhhhccccc-cc
Confidence            6899999999999999999999998654      333221  111111 11245789999999999 7888888888 99


Q ss_pred             EEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHH
Q 022216          138 AVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQ  213 (301)
Q Consensus       138 ~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~  213 (301)
                      .|+|+|+....    .+....+++|+.|+.+++++|++.++++||++||.++||.....+..+.. +..|.+.|+.+|.+
T Consensus        79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~-~~~p~~~Y~~sK~~  157 (322)
T d1r6da_          79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESS-PLEPNSPYAASKAG  157 (322)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTS-CCCCCSHHHHHHHH
T ss_pred             eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCCC-CCCCCCHHHHHHHH
Confidence            99999976542    35566789999999999999999999999999999999987766655543 44667889999999


Q ss_pred             HHHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          214 AEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       214 ~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      +|.+++    +++++++++||+.++||.....               +.+.........++|++|+|+++..++.++. .
T Consensus       158 ~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~-~  236 (322)
T d1r6da_         158 SDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-A  236 (322)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-T
T ss_pred             HHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCC-C
Confidence            998774    4699999999999999864432               1122223333468999999999999998776 5


Q ss_pred             CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          275 YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       275 ~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++||++++   +..++.|+++.+.+
T Consensus       237 ~~~~ni~~~---~~~s~~e~~~~i~~  259 (322)
T d1r6da_         237 GEIYHIGGG---LELTNRELTGILLD  259 (322)
T ss_dssp             TCEEEECCC---CEEEHHHHHHHHHH
T ss_pred             CCeeEEeec---ccchhHHHHHHHHH
Confidence            789999986   99999999998864

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=9.2e-31  Score=233.64  Aligned_cols=226  Identities=17%  Similarity=0.057  Sum_probs=179.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++|+||||||+||||++++++|+++|++|++++|........   ......+..+|+++ .+.+.+.+.+ +|+|||+|+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~---~~~~~~~~~~D~~~-~~~~~~~~~~-~d~Vih~a~   88 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE---DMFCDEFHLVDLRV-MENCLKVTEG-VDHVFNLAA   88 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG---GGTCSEEEECCTTS-HHHHHHHHTT-CSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh---hcccCcEEEeechh-HHHHHHHhhc-CCeEeeccc
Confidence            578999999999999999999999999999998765432211   22466788899999 8889889988 999999997


Q ss_pred             CCCC-----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCc------chhhcchhhHHHHHHHH
Q 022216          145 FQPG-----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNP------AYIFLNVFGLTLIAKLQ  213 (301)
Q Consensus       145 ~~~~-----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~------~~~~~~~~~~y~~sK~~  213 (301)
                      ....     ..+...+.+|+.++.++++++++.++++||++||..+|+.....+..+      ...+..|.+.|+.+|.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~~  168 (363)
T d2c5aa1          89 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLA  168 (363)
T ss_dssp             CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHHHH
Confidence            6542     445567789999999999999999999999999999998766544322      23345667889999999


Q ss_pred             HHHHHH----HcCCcEEEEecCcccCCCCCCce--------------------eeccccccccCCCCHHHHHHHHHHHhc
Q 022216          214 AEQYIR----KSGINYTIIRPGGLRNEPPTGNI--------------------IMETEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       214 ~e~~~~----~~~i~~~~irpg~v~~~~~~~~~--------------------~~~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      +|++++    .+|++++++||++++|+......                    ...........+++++|++++++.++.
T Consensus       169 ~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~  248 (363)
T d2c5aa1         169 TEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTK  248 (363)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHh
Confidence            998774    46999999999999998543211                    111122334569999999999988887


Q ss_pred             CCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          270 HPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       270 ~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .+  .++.||++++   ..+++.|+++.+.+
T Consensus       249 ~~--~~~~~ni~~~---~~~s~~~l~~~i~~  274 (363)
T d2c5aa1         249 SD--FREPVNIGSD---EMVSMNEMAEMVLS  274 (363)
T ss_dssp             SS--CCSCEEECCC---CCEEHHHHHHHHHH
T ss_pred             CC--CCCeEEEecC---CcccHHHHHHHHHH
Confidence            65  4678999996   99999999998865

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=3.5e-31  Score=234.46  Aligned_cols=233  Identities=15%  Similarity=0.127  Sum_probs=184.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh-------hcc-ccCCCCeEEEEccCCCChHhHHHHhc
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-------TTL-SKDNPSLQIVKADVTEGSAKLSEAIG  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~-------~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~  133 (301)
                      ..++.|+|||||||||||++++++|++.|++|++++|......       ... .....++.++.+|+.| ...+.....
T Consensus        12 ~~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d-~~~~~~~~~   90 (341)
T d1sb8a_          12 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRN-LDDCNNACA   90 (341)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTS-HHHHHHHHT
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccc-ccccccccc
Confidence            3456799999999999999999999999999999987433111       110 0123578999999999 788888888


Q ss_pred             CCCCEEEEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHH
Q 022216          134 DDSEAVVCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLI  209 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~  209 (301)
                      . .+.|+|+++...    ..++...+++|+.|+.+++++|++.++++||++||..+||.....+..++. +.+|.+.|+.
T Consensus        91 ~-~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~-~~~p~~~Y~~  168 (341)
T d1sb8a_          91 G-VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT-IGKPLSPYAV  168 (341)
T ss_dssp             T-CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-CCCCCSHHHH
T ss_pred             c-ccccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCC-CCCCCCcchH
Confidence            8 999999987543    235566789999999999999999999999999999999987776665544 4567889999


Q ss_pred             HHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc-------------------eeeccccccccCCCCHHHHHHHHHH
Q 022216          210 AKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN-------------------IIMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       210 sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~-------------------~~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      +|.++|++++    ..+++++++||+.++|+.....                   +...+......++++++|++.++..
T Consensus       169 sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~  248 (341)
T d1sb8a_         169 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLL  248 (341)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhh
Confidence            9999998774    4689999999999999854321                   1111222333479999999999988


Q ss_pred             HhcCCC-CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          267 ALLHPE-SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       267 ~l~~~~-~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++..+. ..+++|++.++   ...++.|+++.|++
T Consensus       249 ~~~~~~~~~~~~~~~~~~---~~~si~~i~~~i~~  280 (341)
T d1sb8a_         249 AATAGLDARNQVYNIAVG---GRTSLNQLFFALRD  280 (341)
T ss_dssp             HHTCCGGGCSEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             hhhccccccceeeeeccc---ccchHHHHHHHHHH
Confidence            887653 45778999885   99999999998864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.4e-30  Score=227.30  Aligned_cols=228  Identities=15%  Similarity=0.180  Sum_probs=174.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      |+||||||+||||++++++|+++| ++|+++++.........  ...+++++++|+++..+..+....+ +|+|||+|+.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~--~~~~~~~i~~Di~~~~~~~~~~~~~-~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL--NHPHFHFVEGDISIHSEWIEYHVKK-CDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT--TCTTEEEEECCTTTCSHHHHHHHHH-CSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc--cCCCeEEEECccCChHHHHHHHHhC-CCcccccccc
Confidence            689999999999999999999999 58999988765555444  3578999999999833434446677 9999999987


Q ss_pred             CCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCc------chhhcchhhHHHHHHHHHH
Q 022216          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNP------AYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       146 ~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~------~~~~~~~~~~y~~sK~~~e  215 (301)
                      ...    .++...+++|+.|+.++++++.+.+. ++++.||..+|+........+      ..+...|...|+.+|.++|
T Consensus        78 ~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E  156 (342)
T d2blla1          78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD  156 (342)
T ss_dssp             CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred             ccccccccCCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence            542    23445689999999999999999886 778999999998765443222      2233456788999999999


Q ss_pred             HHHH----HcCCcEEEEecCcccCCCCCCc-----------------------eeeccccccccCCCCHHHHHHHHHHHh
Q 022216          216 QYIR----KSGINYTIIRPGGLRNEPPTGN-----------------------IIMETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       216 ~~~~----~~~i~~~~irpg~v~~~~~~~~-----------------------~~~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                      +++.    ..|++++++||+.++|+.....                       +...+......++++++|+++++..++
T Consensus       157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~  236 (342)
T d2blla1         157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII  236 (342)
T ss_dssp             HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred             hhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeeh
Confidence            8774    4699999999999999743221                       112223334446899999999999999


Q ss_pred             cCC--CCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          269 LHP--ESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       269 ~~~--~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ..+  ...+++||++++  ...+|+.|+++.|.+
T Consensus       237 ~~~~~~~~g~~~Nig~~--~~~~t~~~l~~~i~~  268 (342)
T d2blla1         237 ENAGNRCDGEIINIGNP--ENEASIEELGEMLLA  268 (342)
T ss_dssp             HCGGGTTTTEEEEECCT--TSEEEHHHHHHHHHH
T ss_pred             hhccccCCCeEEEEecc--cchhHHHHHHHHHHH
Confidence            875  345789999874  245899999998764

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.97  E-value=6.2e-30  Score=226.89  Aligned_cols=228  Identities=17%  Similarity=0.080  Sum_probs=175.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc----hhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD----KAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +|+|||||||||||++++++|+++|++|.++.++..    ...........+++++.+|++| .+.+.+++.. .|.|+|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d-~~~~~~~~~~-~~~v~~   79 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD-AELVDKLAAK-ADAIVH   79 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTC-HHHHHHHHTT-CSEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCC-HHHHHHHHhh-hhhhhh
Confidence            689999999999999999999999988766655421    1111111134789999999999 8999999999 999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCC-----------CCCcchhhcchhhH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ-----------ILNPAYIFLNVFGL  206 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~-----------~~~~~~~~~~~~~~  206 (301)
                      +|+....    .++...+++|+.|+.++++++++.+ .++|++||.++||.....           .......+..|.+.
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~-~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~  158 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD-IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSP  158 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT-CEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSH
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhcccc-ccccccccceEecccCccccccccccCcccccccCCCCCCCCH
Confidence            9986542    4567788999999999999999988 489999999999753210           01111223456788


Q ss_pred             HHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc---------------eeeccccccccCCCCHHHHHHHHHHH
Q 022216          207 TLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN---------------IIMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       207 y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~---------------~~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      |+.+|.++|++++    ..+++++++||+.++||.....               ............+++++|+|++++.+
T Consensus       159 Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~  238 (346)
T d1oc2a_         159 YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAI  238 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHH
Confidence            9999999998774    4699999999999999854321               12223334445689999999999888


Q ss_pred             hcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +..+. .+..|+++++   +..++.|+++.|.+
T Consensus       239 ~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~  267 (346)
T d1oc2a_         239 LTKGR-MGETYLIGAD---GEKNNKEVLELILE  267 (346)
T ss_dssp             HHHCC-TTCEEEECCS---CEEEHHHHHHHHHH
T ss_pred             Hhhcc-cCcccccccc---ccccchHHHHHHHH
Confidence            77665 5678999986   99999999988754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.4e-30  Score=219.45  Aligned_cols=205  Identities=20%  Similarity=0.142  Sum_probs=154.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      .+++|++|||||+++||+++++.|+++|++|++.+|++++++++..+...++.++++|++| ++++.+.++.      ++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   81 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGL   81 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCC-HHHHHHHHHHHHHHhCCC
Confidence            4679999999999999999999999999999999999988877666566788999999999 6665554432      49


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||...+...            ...
T Consensus        82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~------------~~~  149 (244)
T d1nffa_          82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------------VAC  149 (244)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------TTB
T ss_pred             eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccccc------------ccc
Confidence            999999997543        346678899999999999876    34455799999998743211            124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCC---C
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPES---S  274 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~---~  274 (301)
                      ..|..+|.+.+.+.+       .+||+++.|.||++.|++...... .........+..++|+|++++ +|.++.+   .
T Consensus       150 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~pl~R~~~p~diA~~v~-fL~s~~s~~it  227 (244)
T d1nffa_         150 HGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPE-DIFQTALGRAAEPVEVSNLVV-YLASDESSYST  227 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCT-TCSCCSSSSCBCHHHHHHHHH-HHHSGGGTTCC
T ss_pred             cchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhH-HHHhccccCCCCHHHHHHHHH-HHhChhhCCCc
Confidence            667888888876543       479999999999999987543211 111222334679999999995 4555543   4


Q ss_pred             CcEEEeec
Q 022216          275 YKVVEIIS  282 (301)
Q Consensus       275 ~~~~~v~~  282 (301)
                      |+++.+.+
T Consensus       228 G~~i~vDG  235 (244)
T d1nffa_         228 GAEFVVDG  235 (244)
T ss_dssp             SCEEEEST
T ss_pred             CCEEEECC
Confidence            55666554

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-30  Score=226.19  Aligned_cols=225  Identities=16%  Similarity=0.077  Sum_probs=171.9

Q ss_pred             CeE-EEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-----hhccc----cCCCCeEEEEccCCCChHhHHHHhcC-C
Q 022216           67 KKI-FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-----KTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD-D  135 (301)
Q Consensus        67 ~~v-lVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-----~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~-~  135 (301)
                      |+| |||||+||||++++++|+++|++|++++|..+..     +.+..    ....+++++.+|++| .+.+.+++.+ +
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~   79 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTD-STCLVKIINEVK   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTC-HHHHHHHHHHHC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCC-chhhHHHHhhcc
Confidence            466 9999999999999999999999999999975431     22111    123578999999999 8888888865 5


Q ss_pred             CCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCC---CEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          136 SEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~---~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      +++++|+|+....    .+...++++|+.|+.++++++++.++   ++||++||.++||.....+..++. +..|.+.|+
T Consensus        80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~-~~~P~~~Yg  158 (347)
T d1t2aa_          80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETT-PFYPRSPYG  158 (347)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTS-CCCCCSHHH
T ss_pred             cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCC-CCCCCCHHH
Confidence            8899999876542    23445579999999999999998864   489999999999976666655543 456778899


Q ss_pred             HHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc-------------------eeeccccccccCCCCHHHHHHHHH
Q 022216          209 IAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN-------------------IIMETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       209 ~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~-------------------~~~~~~~~~~~~~v~~~Dva~~~~  265 (301)
                      .+|.++|+++.    +++++++++||+.++||.....                   ....+......++++++|+++++.
T Consensus       159 ~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~  238 (347)
T d1t2aa_         159 AAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMW  238 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHH
Confidence            99999998774    4699999999999999853221                   111222333457899999999999


Q ss_pred             HHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHh
Q 022216          266 EALLHPESSYKVVEIISRVDAPKRSYEDLFGSI  298 (301)
Q Consensus       266 ~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i  298 (301)
                      .++....  ...+++...   ...++.+..+.+
T Consensus       239 ~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~  266 (347)
T d1t2aa_         239 LMLQNDE--PEDFVIATG---EVHSVREFVEKS  266 (347)
T ss_dssp             HHHHSSS--CCCEEECCS---CCEEHHHHHHHH
T ss_pred             HHhhcCC--Cccceeccc---cccccchhhhhh
Confidence            9988765  345777775   788888877654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.96  E-value=4.4e-30  Score=227.54  Aligned_cols=230  Identities=16%  Similarity=0.141  Sum_probs=170.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc-----cCCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-----KDNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      +||+||||||+||||++++++|+++|++|+++.|+.++...+..     ........+.+|++| .+++.+++.+ +|+|
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~-~~~v   87 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK-QGAYDEVIKG-AAGV   87 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS-TTTTTTTTTT-CSEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccc-hhhhhhhccc-chhh
Confidence            48999999999999999999999999999999998765443221     123445668899999 7889999999 9999


Q ss_pred             EEccCCCC-CCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecccccccccCCCC----CC---------------cch
Q 022216          140 VCATGFQP-GWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISSILVNGAAMGQI----LN---------------PAY  198 (301)
Q Consensus       140 i~~Ag~~~-~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~~~~----~~---------------~~~  198 (301)
                      +|+|+... ..++...+++|+.|+.+++++|.+. ++++||++||..++.......    ..               +..
T Consensus        88 ~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~  167 (342)
T d1y1pa1          88 AHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPES  167 (342)
T ss_dssp             EECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTT
T ss_pred             hhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccccccc
Confidence            99998644 2344456688999999999999886 589999999986543222111    01               122


Q ss_pred             hhcchhhHHHHHHHHHHHHHH----H--cCCcEEEEecCcccCCCCCCcee-----------ec------cccccccCCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR----K--SGINYTIIRPGGLRNEPPTGNII-----------ME------TEDTLYEGTI  255 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~----~--~~i~~~~irpg~v~~~~~~~~~~-----------~~------~~~~~~~~~v  255 (301)
                      .+.++...|+.+|..+|+++.    +  .++++++++|+.++||.......           ..      ........++
T Consensus       168 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~v  247 (342)
T d1y1pa1         168 DPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYV  247 (342)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEE
T ss_pred             CCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCccceeee
Confidence            345667889999999997553    3  35788999999999985322110           00      0112223589


Q ss_pred             CHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          256 SRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +++|+|++++.+++++...+. ++++++   +.++++|+++.|.+
T Consensus       248 ~v~Dva~~~i~~l~~~~~~g~-~~~~~~---~~~t~~eia~~i~k  288 (342)
T d1y1pa1         248 SAVDIGLLHLGCLVLPQIERR-RVYGTA---GTFDWNTVLATFRK  288 (342)
T ss_dssp             EHHHHHHHHHHHHHCTTCCSC-EEEECC---EEECHHHHHHHHHH
T ss_pred             eHHHHHHHHHHhhcCccccce-EEEEcC---CceEHHHHHHHHHH
Confidence            999999999999988875554 556664   88999999999864

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=2.3e-29  Score=220.60  Aligned_cols=227  Identities=15%  Similarity=0.054  Sum_probs=175.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh--hcc-ccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK--TTL-SKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~--~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      |+|||||||||||+++++.|+++|++|++++|......  .+. .....+++++.+|++| .+.+.+.+.. ..++++|+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD-ACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC-HHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccC-hHHhhhhhccccccccccc
Confidence            68999999999999999999999999999998764321  110 0134689999999999 8888877765 57889998


Q ss_pred             cCCCCC----CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          143 TGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       143 Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      |+....    .+...+++.|+.|+.++++++++.+. ++|++.||..+|+.....+..+ ..+..+.+.|+.+|.++|++
T Consensus        80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E-~~~~~p~~~Y~~sK~~~E~~  158 (321)
T d1rpna_          80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDE-NTPFYPRSPYGVAKLYGHWI  158 (321)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCT-TSCCCCCSHHHHHHHHHHHH
T ss_pred             cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCC-CCCccccChhHHHHHHHHHH
Confidence            875442    34456688999999999999999885 4788888888887665554443 33456778899999999987


Q ss_pred             HH----HcCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          218 IR----KSGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       218 ~~----~~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      +.    .++++++++||++++||......                   ...+......++++++|+|++++.++.++.  
T Consensus       159 ~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~~--  236 (321)
T d1rpna_         159 TVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK--  236 (321)
T ss_dssp             HHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS--
T ss_pred             HHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcCC--
Confidence            74    47899999999999998533221                   111222333468999999999999998875  


Q ss_pred             CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          275 YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       275 ~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ...||++++   +..++.++++.+.+
T Consensus       237 ~~~~ni~~~---~~~s~~~~~~~~~~  259 (321)
T d1rpna_         237 ADDYVVATG---VTTTVRDMCQIAFE  259 (321)
T ss_dssp             CCCEEECCS---CEEEHHHHHHHHHH
T ss_pred             cCCceeccc---ccceehhhhHHHHH
Confidence            456999986   99999999998764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=5.1e-30  Score=231.19  Aligned_cols=232  Identities=14%  Similarity=0.144  Sum_probs=165.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC----------------chh----hhccccCCCCeEEEEccCCCCh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL----------------DKA----KTTLSKDNPSLQIVKADVTEGS  125 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~----------------~~~----~~~~~~~~~~~~~~~~Dl~~~~  125 (301)
                      ||+||||||+||||++++++|++.|++|++++.-.                ...    .........+++++.+||+| .
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d-~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD-F   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS-H
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCC-H
Confidence            68999999999999999999999999999986210                000    00011124689999999999 8


Q ss_pred             HhHHHHhcC-CCCEEEEccCCCCC----CC---CCCceeeehHHHHHHHHHHHHcCCC-EEEEecccccccccCCCCCC-
Q 022216          126 AKLSEAIGD-DSEAVVCATGFQPG----WD---LFAPWKVDNFGTVNLVEACRKRGVN-RFILISSILVNGAAMGQILN-  195 (301)
Q Consensus       126 ~~~~~~~~~-~~d~Vi~~Ag~~~~----~~---~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~~~-  195 (301)
                      +.+.+++.+ ++|+|||+|+....    .+   ...++++|+.|+.+++++|++.+.+ ++++.||..+|+........ 
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~  159 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEG  159 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSS
T ss_pred             HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccccc
Confidence            999999886 58999999986542    11   2346789999999999999998764 67888888877654321100 


Q ss_pred             -----------cchhhcchhhHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCc-------------------
Q 022216          196 -----------PAYIFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGN-------------------  241 (301)
Q Consensus       196 -----------~~~~~~~~~~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~-------------------  241 (301)
                                 ....+..|.+.|+.+|.++|.++.    +++++++++||+.++|+.....                   
T Consensus       160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  239 (393)
T d1i24a_         160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA  239 (393)
T ss_dssp             EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred             cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence                       001124556789999999998763    5799999999999999853211                   


Q ss_pred             -------------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          242 -------------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       242 -------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                                   +.+.+......+|+|++|++++++.+++++...+. +++.+. +++.+++.|+++.+.+
T Consensus       240 i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~-~~~~~~-~~~~~si~el~~~i~~  309 (393)
T d1i24a_         240 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGE-FRVFNQ-FTEQFSVNELASLVTK  309 (393)
T ss_dssp             HHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTC-EEEEEE-CSEEEEHHHHHHHHHH
T ss_pred             hhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccce-eeeecC-CCCeeEHHHHHHHHHH
Confidence                         01112223334689999999999999987765554 333321 1377899999888754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=224.86  Aligned_cols=230  Identities=18%  Similarity=0.190  Sum_probs=174.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch----------hhhccccCCCCeEEEEccCCCChHhHHHHhcC-C
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK----------AKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-D  135 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~  135 (301)
                      |+||||||+||||++++++|+++|++|++++|....          ..........++.++++|++| .+.+.+.+.+ +
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~~~   81 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILD-QGALQRLFKKYS   81 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccc-cccccccccccc
Confidence            689999999999999999999999999999753211          111111134689999999999 8888888766 5


Q ss_pred             CCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHH
Q 022216          136 SEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (301)
                      +++++|+|+....    .++...+++|+.|+.++++++++.++++||++||..+|+...............+.+.|+.+|
T Consensus        82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k  161 (346)
T d1ek6a_          82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSK  161 (346)
T ss_dssp             EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHH
T ss_pred             cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccccccccCChHHHHH
Confidence            7789999997542    245667899999999999999999999999999999998776554444433345567899999


Q ss_pred             HHHHHHHHH-----cCCcEEEEecCcccCCCCCCce--------------------------ee-cc-----ccccccCC
Q 022216          212 LQAEQYIRK-----SGINYTIIRPGGLRNEPPTGNI--------------------------IM-ET-----EDTLYEGT  254 (301)
Q Consensus       212 ~~~e~~~~~-----~~i~~~~irpg~v~~~~~~~~~--------------------------~~-~~-----~~~~~~~~  254 (301)
                      ..+|+.+++     .+++.+++||+.++|+.....+                          .. ..     ......++
T Consensus       162 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdf  241 (346)
T d1ek6a_         162 FFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY  241 (346)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECE
T ss_pred             HHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeE
Confidence            999977653     5899999999999997432110                          00 00     01112358


Q ss_pred             CCHHHHHHHHHHHhc--CCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          255 ISRDQVAEVAVEALL--HPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       255 v~~~Dva~~~~~~l~--~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +|++|+|.++..++.  .....+++||++++   +.+++.|+++.|.+
T Consensus       242 i~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~---~~~s~~dl~~~i~~  286 (346)
T d1ek6a_         242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTG---TGYSVLQMVQAMEK  286 (346)
T ss_dssp             EEHHHHHHHHHHHHHHHTTTCCEEEEEECCS---CCEEHHHHHHHHHH
T ss_pred             EEEEeccchhhhhccccccccCceEEEeCCC---CcccHHHHHHHHHH
Confidence            999999999876643  33346678999986   99999999999865

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.96  E-value=3.2e-30  Score=219.25  Aligned_cols=214  Identities=18%  Similarity=0.230  Sum_probs=155.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.+++++...+...++.++.+|++| ++++.+.+..      ++
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTD-QASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCC-HHHHHHHHHHHHHHhCCc
Confidence            4679999999999999999999999999999999999888877666566789999999999 7666654432      49


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----Hc-CCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KR-GVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~-~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      |++|||||....        ++|+..+++|+.|++++++++.    +. +.++||++||.+.+-   +.         ..
T Consensus        81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---~~---------~~  148 (256)
T d1k2wa_          81 DILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR---GE---------AL  148 (256)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---CC---------TT
T ss_pred             cEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc---cc---------cc
Confidence            999999997542        3567788999999999998752    22 347999999987432   11         22


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------ecc--------ccccccCCCCHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------MET--------EDTLYEGTISRDQVA  261 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~~~--------~~~~~~~~v~~~Dva  261 (301)
                      ...|..+|.+.+.+.+       .+||+++.|.||++.|++......       ...        ...+...+..++|+|
T Consensus       149 ~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p~evA  228 (256)
T d1k2wa_         149 VGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLT  228 (256)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCHHHHH
T ss_pred             ccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCCCCcCHHHHH
Confidence            4667888888876543       479999999999999986432110       000        011123467899999


Q ss_pred             HHHHHHhcCCCCCCcEEEeecCCCCCCcC
Q 022216          262 EVAVEALLHPESSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       262 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~s  290 (301)
                      +++ .+|.++.+.+.+.+....|+|..++
T Consensus       229 ~~v-~fL~S~~a~~iTG~~i~vDGG~~ms  256 (256)
T d1k2wa_         229 GMA-IFLATPEADYIVAQTYNVDGGNWMS  256 (256)
T ss_dssp             HHH-HHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred             HHH-HHHhCchhCCccCceEEECcchhhC
Confidence            998 5666766554444433333345543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.96  E-value=1.4e-29  Score=214.11  Aligned_cols=205  Identities=15%  Similarity=0.182  Sum_probs=143.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-hhccccCCCCeEEEEccCCCChHhHHHH-------hcC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGD  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~  134 (301)
                      ++++|++|||||+++||+++++.|+++|++|++.+|++.+. ++.....+.++.++.+|++| ++++.+.       ++.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999999987543 22333356789999999999 6655554       445


Q ss_pred             CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                       +|++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||.....   +.         .
T Consensus        81 -iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~---~~---------~  147 (247)
T d2ew8a1          81 -CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---KI---------E  147 (247)
T ss_dssp             -CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS---CC---------S
T ss_pred             -CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc---cC---------c
Confidence             9999999997543        357778999999999999887    445567999999987432   11         1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHHHHHHhc
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ....|..+|.+.+.+.+       .+||+++.|.||++.|++.........      .......+..++|+|+++ .+|.
T Consensus       148 ~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~l~r~~~pedvA~~v-~fL~  226 (247)
T d2ew8a1         148 AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAA-AFLA  226 (247)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------CTTSSSCSCCCTHHHHHHH-HHHT
T ss_pred             ccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhHHHHHHHhccCCCCCCHHHHHHHH-HHHh
Confidence            23567778887765443       479999999999999987543321111      111222356899999998 4566


Q ss_pred             CCCCC---CcEEEeec
Q 022216          270 HPESS---YKVVEIIS  282 (301)
Q Consensus       270 ~~~~~---~~~~~v~~  282 (301)
                      ++.+.   |+++.+.+
T Consensus       227 S~~s~~itG~~i~vDG  242 (247)
T d2ew8a1         227 SDDASFITGQTLAVDG  242 (247)
T ss_dssp             SGGGTTCCSCEEEESS
T ss_pred             CchhcCCcCCeEEECC
Confidence            66544   45555544

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.9e-29  Score=223.83  Aligned_cols=230  Identities=18%  Similarity=0.189  Sum_probs=168.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh----hhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA----KTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      |+||||||+||||++++++|+++|++|+++++.....    .........+++++++|++| .+.+.+++.. ++|+|||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD-RKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC-HHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCC-HHHHHHHHhccCCCEEEE
Confidence            6799999999999999999999999999987643221    11111134689999999999 8889888874 4999999


Q ss_pred             ccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCC---cchhhcchhhHHHHHHHHH
Q 022216          142 ATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILN---PAYIFLNVFGLTLIAKLQA  214 (301)
Q Consensus       142 ~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~---~~~~~~~~~~~y~~sK~~~  214 (301)
                      +|+....    .++..++++|+.|+.+++++|++.++++||++||..+||.....+..   .+..+..+.+.|+.+|.++
T Consensus        81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~  160 (347)
T d1z45a2          81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAI  160 (347)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHHH
T ss_pred             ccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHHHH
Confidence            9986542    24456778999999999999999999999999999999866543211   2223445678899999999


Q ss_pred             HHHHHH------cCCcEEEEecCcccCCCCCCce--------------------------eecccc------ccccCCCC
Q 022216          215 EQYIRK------SGINYTIIRPGGLRNEPPTGNI--------------------------IMETED------TLYEGTIS  256 (301)
Q Consensus       215 e~~~~~------~~i~~~~irpg~v~~~~~~~~~--------------------------~~~~~~------~~~~~~v~  256 (301)
                      |++++.      .+++++++||+.++|+...+.+                          ...+..      ....++++
T Consensus       161 E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d~~~  240 (347)
T d1z45a2         161 ENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIH  240 (347)
T ss_dssp             HHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEE
T ss_pred             HHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeeeeee
Confidence            987743      4789999999999986432110                          000000      11123556


Q ss_pred             HHHHHHHHHHHhcC------CCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          257 RDQVAEVAVEALLH------PESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       257 ~~Dva~~~~~~l~~------~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +.|++.+++.++..      ....+++||++++   +++++.|+++.+.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~---~~~s~~e~~~~i~~  287 (347)
T d1z45a2         241 VVDLAKGHIAALQYLEAYNENEGLCREWNLGSG---KGSTVFEVYHAFCK  287 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCS---CCEEHHHHHHHHHH
T ss_pred             eecccccccccccccccccccccccccceecCC---CcccHHHHHHHHHH
Confidence            67777777766542      2234678998885   99999999998865

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2e-30  Score=218.62  Aligned_cols=205  Identities=16%  Similarity=0.138  Sum_probs=152.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      ++||++|||||+++||+++++.|+++|++|++.+|+++.++++..+...+...+.+|++| ++++++.++.      ++|
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD   80 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTD-PASIESVLEKIRAEFGEVD   80 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHTCSCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC-HHHhhhhhhhhhcccCCcc
Confidence            579999999999999999999999999999999999888777655445678999999999 6655554432      499


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      ++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||...+..            .....
T Consensus        81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~------------~~~~~  148 (243)
T d1q7ba_          81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMG------------NGGQA  148 (243)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------------CTTCH
T ss_pred             eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCC------------CCCCH
Confidence            99999997543        356778899999999999987    4445679999999874321            12246


Q ss_pred             HHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHHhcCCCC-
Q 022216          206 LTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEALLHPES-  273 (301)
Q Consensus       206 ~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~-  273 (301)
                      .|..+|.+.+.+.+       .+||+++.|.||++.|++.......   . ........+..++|+|++++. |.++.+ 
T Consensus       149 ~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~f-L~S~~s~  227 (243)
T d1q7ba_         149 NYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVAF-LASDEAA  227 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCTTSSCBCHHHHHHHHHH-HHSGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhcCCCCCCCCHHHHHHHHHH-HhCchhc
Confidence            78888888876553       4799999999999998753322110   0 011122346789999999854 445544 


Q ss_pred             --CCcEEEeec
Q 022216          274 --SYKVVEIIS  282 (301)
Q Consensus       274 --~~~~~~v~~  282 (301)
                        .|+++.+.+
T Consensus       228 ~itGq~i~vdG  238 (243)
T d1q7ba_         228 YITGETLHVNG  238 (243)
T ss_dssp             TCCSCEEEEST
T ss_pred             CCcCCeEEECC
Confidence              455555554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.96  E-value=5.1e-30  Score=217.27  Aligned_cols=206  Identities=15%  Similarity=0.121  Sum_probs=152.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-------cCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~~  135 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.+++++...+...++.++++|++| ++++++.+       +. 
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~-   79 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGS-   79 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCC-HHHHHHHHHHHHHHcCC-
Confidence            4689999999999999999999999999999999999988877766566789999999999 66665544       45 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      +|++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||...+...            ..
T Consensus        80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~------------~~  147 (254)
T d1hdca_          80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL------------AL  147 (254)
T ss_dssp             CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------TT
T ss_pred             ccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccc------------cc
Confidence            9999999997543        356678899999999999987    34456899999998743211            12


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---eccccccccCCC--CHHHHHHHHHHHhcCC
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---METEDTLYEGTI--SRDQVAEVAVEALLHP  271 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~~~~~~~~~~~v--~~~Dva~~~~~~l~~~  271 (301)
                      ...|..+|.+.+.+.+       .+||+++.|.||++.+++......   .......+.+.+  .++|+|++++ +|.++
T Consensus       148 ~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~g~~PedvA~~v~-fL~S~  226 (254)
T d1hdca_         148 TSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVV-KLLSD  226 (254)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHH-HHHSG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccchhcCHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHhch
Confidence            4678888888876553       478999999999999875322110   011112222333  5899999995 55555


Q ss_pred             CC---CCcEEEeecC
Q 022216          272 ES---SYKVVEIISR  283 (301)
Q Consensus       272 ~~---~~~~~~v~~~  283 (301)
                      .+   .|+++.+.++
T Consensus       227 ~a~~itG~~i~vDGG  241 (254)
T d1hdca_         227 TSSYVTGAELAVDGG  241 (254)
T ss_dssp             GGTTCCSCEEEESTT
T ss_pred             hhCCCCCceEEeCCC
Confidence            54   4566666553

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=6.6e-30  Score=216.49  Aligned_cols=207  Identities=19%  Similarity=0.221  Sum_probs=150.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHh-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      +++++|++|||||+++||++++++|+++|++|++.+|+.+++++...    ..+.++.++.+|++| ++++.+.+     
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~   79 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKE   79 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999877654332    235678899999999 65555544     


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcch
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        ++ +|++|||||....        ++|+..+++|+.+++++++++.    +.+.++||+++|.....  .+.      
T Consensus        80 ~~g~-iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~--~~~------  150 (251)
T d1vl8a_          80 KFGK-LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE--VTM------  150 (251)
T ss_dssp             HHSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC--CCS------
T ss_pred             HcCC-CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc--ccC------
Confidence              45 9999999997543        3567788999999999999873    34557999999975311  111      


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~  265 (301)
                         .....|..+|.+.+.+.+       .+||+++.|.||++.|++........      ....+...+..++|+|++++
T Consensus       151 ---~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~  227 (251)
T d1vl8a_         151 ---PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAV  227 (251)
T ss_dssp             ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHH
T ss_pred             ---ccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence               123668888888876543       47999999999999998754321110      01112234568999999995


Q ss_pred             HHhcCCCCC---CcEEEeec
Q 022216          266 EALLHPESS---YKVVEIIS  282 (301)
Q Consensus       266 ~~l~~~~~~---~~~~~v~~  282 (301)
                       +|.++.+.   |+++.|.+
T Consensus       228 -fL~S~~a~~itG~~i~vDG  246 (251)
T d1vl8a_         228 -FLASEEAKYVTGQIIFVDG  246 (251)
T ss_dssp             -HHHSGGGTTCCSCEEEEST
T ss_pred             -HHhCchhCCCcCcEEEeCc
Confidence             55566544   45555544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=1.5e-29  Score=214.38  Aligned_cols=207  Identities=16%  Similarity=0.095  Sum_probs=149.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++++|++|||||+++||++++++|+++|++|++.+|+.+++++...   ....++.++.+|++| ++++.+.++.    
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~   84 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTE   84 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHh
Confidence            57789999999999999999999999999999999999877665332   245678999999999 7666555432    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||...+..            
T Consensus        85 ~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~------------  152 (251)
T d2c07a1          85 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG------------  152 (251)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC------------
T ss_pred             cCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCC------------
Confidence              49999999996542        356778899999999999886    4455689999999874321            


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHHhc
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      ......|..+|.+.+.+.+       .+||+++.|.||++.|++.......   . ........+..++|+|++++ +|.
T Consensus       153 ~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~-fL~  231 (251)
T d2c07a1         153 NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLAC-FLS  231 (251)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSCBCHHHHHHHHH-HHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHH-HHh
Confidence            1224678888888876553       4799999999999999875442110   0 01112234668999999985 555


Q ss_pred             CCCC---CCcEEEeec
Q 022216          270 HPES---SYKVVEIIS  282 (301)
Q Consensus       270 ~~~~---~~~~~~v~~  282 (301)
                      ++.+   .|+++.+.+
T Consensus       232 S~~s~~itG~~i~vDG  247 (251)
T d2c07a1         232 SDKSGYINGRVFVIDG  247 (251)
T ss_dssp             SGGGTTCCSCEEEEST
T ss_pred             CchhCCCcCcEEEECC
Confidence            5554   455555554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.6e-29  Score=212.94  Aligned_cols=205  Identities=14%  Similarity=0.088  Sum_probs=152.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~Vi  140 (301)
                      +++||++|||||+++||++++++|+++|++|++.+|+.++++++.. ...++..+.+|++| .+++++++.+  ++|++|
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~-~~~~~~~~~~Dv~~-~~~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK-ECPGIEPVCVDLGD-WDATEKALGGIGPVDLLV   79 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HSTTCEEEECCTTC-HHHHHHHHTTCCCCSEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hcCCCeEEEEeCCC-HHHHHHHHHHcCCCeEEE
Confidence            4689999999999999999999999999999999999888776554 33578899999999 8888888765  699999


Q ss_pred             EccCCCCC--------CCCCCceeeehHHHHHHHHHHHH-----cCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          141 CATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK-----RGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       141 ~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~-----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      ||||....        ++|+..+++|+.+++++++++.+     .+.+++|++||...+...            .....|
T Consensus        80 nnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~~~~~Y  147 (242)
T d1cyda_          80 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------PNLITY  147 (242)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TTBHHH
T ss_pred             ECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC------------Cccccc
Confidence            99997543        34667889999999999987632     234699999998643211            124678


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce-----eec-cccccccCCCCHHHHHHHHHHHhcCCCCC
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI-----IME-TEDTLYEGTISRDQVAEVAVEALLHPESS  274 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~-----~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~~  274 (301)
                      ..+|.+.+.+.+       .+||+++.|.||++.|++.....     ... ....+...+..++|+|++++ +|.++.+.
T Consensus       148 ~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peeva~~v~-fL~S~~s~  226 (242)
T d1cyda_         148 SSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSIL-FLLSDRSA  226 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHH-HHHSGGGT
T ss_pred             cchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCCCCCcCHHHHHHHHH-HHhCchhc
Confidence            888988876553       47999999999999987532111     000 11112234678999999985 55555544


Q ss_pred             ---CcEEEeec
Q 022216          275 ---YKVVEIIS  282 (301)
Q Consensus       275 ---~~~~~v~~  282 (301)
                         |+++.+.+
T Consensus       227 ~itG~~i~vDG  237 (242)
T d1cyda_         227 STSGGGILVDA  237 (242)
T ss_dssp             TCCSSEEEEST
T ss_pred             CcCCceEEeCc
Confidence               45555544

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.96  E-value=1.7e-29  Score=214.84  Aligned_cols=204  Identities=17%  Similarity=0.176  Sum_probs=148.3

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc-----cCCCCeEEEEccCCCChHhHHHHh------
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-----KDNPSLQIVKADVTEGSAKLSEAI------  132 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~------  132 (301)
                      +++|++|||||+++||++++++|+++|++|++.+|+.+++++...     ....++..+.+|++| ++++.+.+      
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC-HHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999877654322     134578899999999 66665544      


Q ss_pred             -cCCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          133 -GDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 -~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                       +. +|++|||||+...         ++|+..+++|+.+++++++++    ++.+.++||++||...+-   +.      
T Consensus        81 ~G~-iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~---~~------  150 (258)
T d1iy8a_          81 FGR-IDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR---GI------  150 (258)
T ss_dssp             HSC-CSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---BC------
T ss_pred             hCC-CCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc---CC------
Confidence             45 9999999996432         356778899999999999887    344568999999987432   11      


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------------cccccccCCCCHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------------TEDTLYEGTISRDQ  259 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------------~~~~~~~~~v~~~D  259 (301)
                         .....|..+|.+.+.+.+       .+||+++.|.||++.|++........            ....+...+..++|
T Consensus       151 ---~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~p~d  227 (258)
T d1iy8a_         151 ---GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPE  227 (258)
T ss_dssp             ---SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCBCHHH
T ss_pred             ---CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCCCCcCHHH
Confidence               124667788887775543       47999999999999987532221100            00112234668999


Q ss_pred             HHHHHHHHhcCCCCCC---cEEEeec
Q 022216          260 VAEVAVEALLHPESSY---KVVEIIS  282 (301)
Q Consensus       260 va~~~~~~l~~~~~~~---~~~~v~~  282 (301)
                      +|+++ .+|.++.+.+   +++.|.+
T Consensus       228 vA~~v-~fL~S~~s~~itG~~i~VDG  252 (258)
T d1iy8a_         228 IAAVV-AFLLSDDASYVNATVVPIDG  252 (258)
T ss_dssp             HHHHH-HHHTSGGGTTCCSCEEEEST
T ss_pred             HHHHH-HHHhCchhcCCcCceEEcCc
Confidence            99998 5666665544   4555544

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.3e-28  Score=215.29  Aligned_cols=214  Identities=14%  Similarity=0.154  Sum_probs=164.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag  144 (301)
                      .|+|||||||||||++|+++|+++|+.|+++.+..                 +.|++| .+.+.+.+.. ++|.|+|+|+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~d~v~~~a~   63 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------ELNLLD-SRAVHDFFASERIDQVYLAAA   63 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------TCCTTC-HHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-----------------hccccC-HHHHHHHHhhcCCCEEEEcch
Confidence            57999999999999999999999999988764331                 158898 7888888766 6999999997


Q ss_pred             CCCC-----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchh----hcchhhHHHHHHHHHH
Q 022216          145 FQPG-----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYI----FLNVFGLTLIAKLQAE  215 (301)
Q Consensus       145 ~~~~-----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~----~~~~~~~y~~sK~~~e  215 (301)
                      ....     .+...++++|+.|+.+++++|++.++++|||+||.++||.....+..++..    +..+.+.|+.+|.++|
T Consensus        64 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E  143 (315)
T d1e6ua_          64 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGI  143 (315)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHH
T ss_pred             hccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHH
Confidence            6542     234456789999999999999999999999999999999766655444332    2234467999999999


Q ss_pred             HHHH----HcCCcEEEEecCcccCCCCCCc------------------------eeeccccccccCCCCHHHHHHHHHHH
Q 022216          216 QYIR----KSGINYTIIRPGGLRNEPPTGN------------------------IIMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       216 ~~~~----~~~i~~~~irpg~v~~~~~~~~------------------------~~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ++++    +.|++++++||++++||.....                        +...........+++++|+++++..+
T Consensus       144 ~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~  223 (315)
T d1e6ua_         144 KLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHV  223 (315)
T ss_dssp             HHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHh
Confidence            8774    4699999999999999854321                        11112223335689999999999888


Q ss_pred             hcCCC--------CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHPE--------SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~~--------~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +....        .....++++.+   ...++.++++.+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~i~~  261 (315)
T d1e6ua_         224 MELAHEVWLENTQPMLSHINVGTG---VDCTIRELAQTIAK  261 (315)
T ss_dssp             HHSCHHHHHHTSBTTBCCEEESCS---CCEEHHHHHHHHHH
T ss_pred             hhhccccccccccccccccccCCC---cchHHHHHHHHHHH
Confidence            75542        23456888775   88999999988753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.6e-29  Score=215.03  Aligned_cols=212  Identities=18%  Similarity=0.158  Sum_probs=141.1

Q ss_pred             hhcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHH------
Q 022216           61 NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEA------  131 (301)
Q Consensus        61 ~~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~------  131 (301)
                      .|++++|++|||||+++||++++++|+++|++|++++|+.+++++...   ....++..+.+|++| ++++.+.      
T Consensus         3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   81 (259)
T d1xq1a_           3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSS   81 (259)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC-HHHHHHHHHHHHH
Confidence            378899999999999999999999999999999999999877665432   245689999999999 6554443      


Q ss_pred             -hcCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          132 -IGDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       132 -~~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                       +.+++|++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||......          
T Consensus        82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~----------  151 (259)
T d1xq1a_          82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS----------  151 (259)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred             HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccc----------
Confidence             32249999999997542        356778899999999999887    4456689999999864311          


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc----c-cccccCCCCHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET----E-DTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~----~-~~~~~~~v~~~Dva~~~~~  266 (301)
                        ......|..+|.+.+.+.+       .+||+++.|.||++.|++.........    . ......+..++|+|++++ 
T Consensus       152 --~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~-  228 (259)
T d1xq1a_         152 --ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVA-  228 (259)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------CCGGGGHHHHH-
T ss_pred             --ccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHhCCCCCCCcCHHHHHHHHH-
Confidence              1123567888888876543       479999999999999987543221111    1 111223568999999985 


Q ss_pred             HhcCCCCCCcEEEeecCCCC
Q 022216          267 ALLHPESSYKVVEIISRVDA  286 (301)
Q Consensus       267 ~l~~~~~~~~~~~v~~~~~~  286 (301)
                      +|.++.+.+.+.+....|+|
T Consensus       229 fL~S~~s~~iTG~~i~vDGG  248 (259)
T d1xq1a_         229 FLCMPAASYITGQTICVDGG  248 (259)
T ss_dssp             HHTSGGGTTCCSCEEECCCC
T ss_pred             HHhCchhcCCcCcEEEeCCC
Confidence            66666655544444333333

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=211.87  Aligned_cols=206  Identities=14%  Similarity=0.120  Sum_probs=153.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC--CCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD--DSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~d~V  139 (301)
                      +.++||++|||||+++||++++++|+++|++|++.+|+.++++++..+ ..++..+.+|++| .+++++.+..  ++|++
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-~~~~~~~~~Dv~d-~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE-CPGIEPVCVDLGD-WEATERALGSVGPVDLL   80 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-STTCEEEECCTTC-HHHHHHHHTTCCCCCEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh-cCCCeEEEEeCCC-HHHHHHHHHHhCCceEE
Confidence            457899999999999999999999999999999999998887766543 3578899999999 8888887765  69999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHHH-----HcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~-----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      |||||....        ++|+..+++|+.+++++++++.     +.+.++||++||.......            .....
T Consensus        81 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------------~~~~~  148 (244)
T d1pr9a_          81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------TNHSV  148 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TTBHH
T ss_pred             EeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc------------cchhh
Confidence            999997543        3567789999999999888763     2345799999998743211            12466


Q ss_pred             HHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          207 TLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       207 y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      |..+|.+.+.+.+       .+||+++.|.||.+.|++........      ....+...+..++|+|++++ +|.++.+
T Consensus       149 Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~-fL~S~~a  227 (244)
T d1pr9a_         149 YCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAIL-FLLSDRS  227 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTCSCBCHHHHHHHHH-HHHSGGG
T ss_pred             hhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCCCCcCHHHHHHHHH-HHhCchh
Confidence            8888888876543       47999999999999998533221100      01112234678999999995 5556654


Q ss_pred             C---CcEEEeec
Q 022216          274 S---YKVVEIIS  282 (301)
Q Consensus       274 ~---~~~~~v~~  282 (301)
                      .   |+++.+.+
T Consensus       228 ~~itG~~i~vDG  239 (244)
T d1pr9a_         228 GMTTGSTLPVEG  239 (244)
T ss_dssp             TTCCSCEEEEST
T ss_pred             CCcCCcEEEECc
Confidence            4   44555544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.7e-29  Score=214.41  Aligned_cols=206  Identities=18%  Similarity=0.232  Sum_probs=150.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHH-------
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEA-------  131 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~-------  131 (301)
                      ++++||++|||||+++||++++++|+++|++|++.+|+.+++++...   ....++.++++|++| ++++.+.       
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~-~~~~~~~~~~~~~~   85 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISK   85 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999877665432   245688999999999 6555544       


Q ss_pred             hcCCCCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          132 IGDDSEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       132 ~~~~~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      ++. +|++|||||....       ++|+..+++|+.+++++++++    ++.+.++||++||.+.+...           
T Consensus        86 ~g~-iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~-----------  153 (255)
T d1fmca_          86 LGK-VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN-----------  153 (255)
T ss_dssp             HSS-CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-----------
T ss_pred             cCC-CCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccc-----------
Confidence            445 9999999997543       346667899999999998877    34455789999998643211           


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----c-cccccccCCCCHHHHHHHHHHHh
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----E-TEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~-~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                       .....|..+|.+.+.+.+       .+||+++.|.||++.|++.......    . ....+...+..++|+|++++ +|
T Consensus       154 -~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~pl~R~g~pedvA~~v~-fL  231 (255)
T d1fmca_         154 -INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAAL-FL  231 (255)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHH-HH
T ss_pred             -cccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHH-HH
Confidence             124667888888876543       4799999999999998753322110    0 01112234568999999985 55


Q ss_pred             cCCCCC---CcEEEeec
Q 022216          269 LHPESS---YKVVEIIS  282 (301)
Q Consensus       269 ~~~~~~---~~~~~v~~  282 (301)
                      .++.+.   |+++.+.+
T Consensus       232 ~S~~s~~itG~~i~vDG  248 (255)
T d1fmca_         232 CSPAASWVSGQILTVSG  248 (255)
T ss_dssp             HSGGGTTCCSCEEEEST
T ss_pred             hCchhcCCcCCEEEECc
Confidence            566554   44555544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=5.1e-29  Score=209.87  Aligned_cols=203  Identities=18%  Similarity=0.153  Sum_probs=147.9

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.+++++...  ..+..++.+|++| ++++.+.+..      ++
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~--~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   78 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE--AVGAHPVVMDVAD-PASVERGFAEALAHLGRL   78 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--TTTCEEEECCTTC-HHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--HcCCeEEEEecCC-HHHHHHHHHHHHHhcCCc
Confidence            4679999999999999999999999999999999999888776653  3467889999999 6666554432      49


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH----cCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK----RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |++|||||+...        ++|+..+++|+.+++++++++.+    .+.++++++||....+    .         ...
T Consensus        79 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~----~---------~~~  145 (242)
T d1ulsa_          79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG----N---------LGQ  145 (242)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC----C---------TTC
T ss_pred             eEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC----C---------CCC
Confidence            999999997543        35677889999999999998743    3445777777754221    1         124


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc----ccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET----EDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~----~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      ..|..+|.+.+.+.+       .+||+++.|.||++.|++.........    ...+...+..++|+|++++ +|.++.+
T Consensus       146 ~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~-fL~S~~s  224 (242)
T d1ulsa_         146 ANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAYAAL-FLLSDES  224 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHHHHHHHH-HHHSGGG
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHhchhh
Confidence            568888888876543       478999999999999987654321110    1112234568999999985 5555554


Q ss_pred             ---CCcEEEeec
Q 022216          274 ---SYKVVEIIS  282 (301)
Q Consensus       274 ---~~~~~~v~~  282 (301)
                         .|+++.+.+
T Consensus       225 ~~itG~~i~vDG  236 (242)
T d1ulsa_         225 SFITGQVLFVDG  236 (242)
T ss_dssp             TTCCSCEEEEST
T ss_pred             CCCCCcEEEECC
Confidence               455555544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=4.3e-29  Score=210.96  Aligned_cols=201  Identities=14%  Similarity=0.128  Sum_probs=145.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-------cCCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-------GDDS  136 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~~~  136 (301)
                      ++||++|||||+++||+++++.|+++|++|++.+|+++..+...   ..+..++++|++| .+++++.+       ++ +
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~---~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~-i   77 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE---AIGGAFFQVDLED-ERERVRFVEEAAYALGR-V   77 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHH---HHTCEEEECCTTC-HHHHHHHHHHHHHHHSC-C
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HcCCeEEEEeCCC-HHHHHHHHHHHHHhcCC-C
Confidence            57999999999999999999999999999999999877644322   1356788999999 65555444       44 9


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |++|||||....        ++|+..+++|+.|++++++++    ++.+.++||++||...+...            ...
T Consensus        78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~------------~~~  145 (248)
T d2d1ya1          78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE------------QEN  145 (248)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC------------TTB
T ss_pred             CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc------------ccc
Confidence            999999997543        346678899999999999988    34455799999998743211            224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---------c-cccccccCCCCHHHHHHHHHHH
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---------E-TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---------~-~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ..|..+|.+.+.+.+       .+||+++.|.||.+.|++.......         . ........+..++|+|++++ +
T Consensus       146 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~-f  224 (248)
T d2d1ya1         146 AAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVL-F  224 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHH-H
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCCCCCcCHHHHHHHHH-H
Confidence            677888888876543       4799999999999998753221100         0 01112234668999999985 5


Q ss_pred             hcCCCCC---CcEEEeec
Q 022216          268 LLHPESS---YKVVEIIS  282 (301)
Q Consensus       268 l~~~~~~---~~~~~v~~  282 (301)
                      |.++.+.   |+++.+.+
T Consensus       225 L~S~~s~~itG~~i~vDG  242 (248)
T d2d1ya1         225 LASEKASFITGAILPVDG  242 (248)
T ss_dssp             HHSGGGTTCCSCEEEEST
T ss_pred             HhCchhcCCCCcEEEcCc
Confidence            5555544   44555544

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=1.2e-28  Score=221.49  Aligned_cols=231  Identities=17%  Similarity=0.130  Sum_probs=171.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHH-CCCeEEEEEeCC---------chhhhc-----------cccCCCCeEEEEccCCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRDL---------DKAKTT-----------LSKDNPSLQIVKADVTEG  124 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~~r~~---------~~~~~~-----------~~~~~~~~~~~~~Dl~~~  124 (301)
                      +|+||||||+||||++++++|++ .|++|+++++-.         ...+..           ......++.++.+|++| 
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d-   80 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN-   80 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC-
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC-
Confidence            68999999999999999999996 689999987411         100000           00123578899999999 


Q ss_pred             hHhHHHHhcC--CCCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCC----
Q 022216          125 SAKLSEAIGD--DSEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQIL----  194 (301)
Q Consensus       125 ~~~~~~~~~~--~~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~----  194 (301)
                      .+.+.+++..  ++|+|||+|+....    .+...++++|+.++.++++++++.++++++++||..+|+.......    
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence            8888888863  48999999986543    2444567899999999999999999999999999999875543211    


Q ss_pred             --CcchhhcchhhHHHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCceee------------------------
Q 022216          195 --NPAYIFLNVFGLTLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNIIM------------------------  244 (301)
Q Consensus       195 --~~~~~~~~~~~~y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~~~------------------------  244 (301)
                        .....+..|.+.|+.+|..+|++++    .+|++++++||+.++||........                        
T Consensus       161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~  240 (383)
T d1gy8a_         161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ  240 (383)
T ss_dssp             CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred             cccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccccc
Confidence              1112334667889999999998775    3699999999999999865432100                        


Q ss_pred             ----------------c------cccccccCCCCHHHHHHHHHHHhcCC--------CCCCcEEEeecCCCCCCcCHHHH
Q 022216          245 ----------------E------TEDTLYEGTISRDQVAEVAVEALLHP--------ESSYKVVEIISRVDAPKRSYEDL  294 (301)
Q Consensus       245 ----------------~------~~~~~~~~~v~~~Dva~~~~~~l~~~--------~~~~~~~~v~~~~~~~~~s~~e~  294 (301)
                                      .      .......++++++|+|++++.++...        ...+++||++++   +.+++.|+
T Consensus       241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~---~~~s~~el  317 (383)
T d1gy8a_         241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS---RGYSVREV  317 (383)
T ss_dssp             ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS---CCEEHHHH
T ss_pred             cchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCC---CceeHHHH
Confidence                            0      00111235789999999998887531        234578999885   89999999


Q ss_pred             HHHhhc
Q 022216          295 FGSIKQ  300 (301)
Q Consensus       295 ~~~i~~  300 (301)
                      ++.+.+
T Consensus       318 ~~~i~~  323 (383)
T d1gy8a_         318 IEVARK  323 (383)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=4.8e-29  Score=209.31  Aligned_cols=198  Identities=18%  Similarity=0.193  Sum_probs=143.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.+..        .++..+++|++| .+++.+.+..      ++
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--------~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   74 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP--------KGLFGVEVDVTD-SDAVDRAFTAVEEHQGPV   74 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------TTSEEEECCTTC-HHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh--------cCceEEEEecCC-HHHHHHHHHHHHHhcCCc
Confidence            57899999999999999999999999999999999987653        456779999999 6655554432      49


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |++|||||....        ++|+.++++|+.+++.+++++    ++.+.++||++||.+....            ....
T Consensus        75 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~------------~~~~  142 (237)
T d1uzma1          75 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWG------------IGNQ  142 (237)
T ss_dssp             SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------CC
T ss_pred             eEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccC------------Cccc
Confidence            999999997542        356778999999999988876    4556679999999864321            1224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCc---eeec-cccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGN---IIME-TEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~---~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      ..|..+|.+.+.+.+       .+||+++.|.||++.|++....   .... ........+..++|+|++++ +|.++.+
T Consensus       143 ~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~-fL~S~~s  221 (237)
T d1uzma1         143 ANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVS-FLASEDA  221 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTTCSCBCHHHHHHHHH-HHHSGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHH-HHhCchh
Confidence            678888888876553       4799999999999999753321   1000 11122234678999999985 5555554


Q ss_pred             C---CcEEEeec
Q 022216          274 S---YKVVEIIS  282 (301)
Q Consensus       274 ~---~~~~~v~~  282 (301)
                      .   |+++.+.+
T Consensus       222 ~~itG~~i~vdG  233 (237)
T d1uzma1         222 SYISGAVIPVDG  233 (237)
T ss_dssp             TTCCSCEEEEST
T ss_pred             cCCcCCeEEECC
Confidence            4   45555544

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.6e-29  Score=207.85  Aligned_cols=202  Identities=17%  Similarity=0.218  Sum_probs=158.7

Q ss_pred             hhcccCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           61 NVSVKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        61 ~~~~~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      ++.|++|+||||||||+||++++++|+++|.  +|+++.|++.+.....   ..++....+|+.+ .+++.+++.+ +|+
T Consensus         9 ~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~---~~~i~~~~~D~~~-~~~~~~~~~~-~d~   83 (232)
T d2bkaa1           9 DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---YKNVNQEVVDFEK-LDDYASAFQG-HDV   83 (232)
T ss_dssp             HHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---GGGCEEEECCGGG-GGGGGGGGSS-CSE
T ss_pred             HhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc---cceeeeeeecccc-cccccccccc-ccc
Confidence            4678899999999999999999999999995  8999999876544322   3678888899998 8899999999 999


Q ss_pred             EEEccCCCCC-CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHH
Q 022216          139 VVCATGFQPG-WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQY  217 (301)
Q Consensus       139 Vi~~Ag~~~~-~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  217 (301)
                      ||||+|.... .+...++++|+.++.+++++|++.++++||++||..++...              .+.|+.+|..+|+.
T Consensus        84 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~~--------------~~~Y~~~K~~~E~~  149 (232)
T d2bkaa1          84 GFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSS--------------NFLYLQVKGEVEAK  149 (232)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTC--------------SSHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhcccccceeeecccccCccccccCCccccccCc--------------cchhHHHHHHhhhc
Confidence            9999986432 23445678999999999999999999999999998765322              25689999999999


Q ss_pred             HHHcCCc-EEEEecCcccCCCCCCcee---------eccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeec
Q 022216          218 IRKSGIN-YTIIRPGGLRNEPPTGNII---------METEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       218 ~~~~~i~-~~~irpg~v~~~~~~~~~~---------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~  282 (301)
                      +.+.+++ ++++|||.++|+.......         ...........++++|+|++++.++..+.. ++.+.+.+
T Consensus       150 l~~~~~~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~dvA~a~i~~~~~~~~-~~~~i~~~  223 (232)
T d2bkaa1         150 VEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD-KQMELLEN  223 (232)
T ss_dssp             HHTTCCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCC-SSEEEEEH
T ss_pred             cccccccceEEecCceeecCCCcCcHHHHHHHHHhhccCCcccCCCeEEHHHHHHHHHHHHhcCcc-CCeEEEcH
Confidence            9888875 9999999999986443211         011111223468999999999998887763 44555554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.96  E-value=2.4e-29  Score=214.02  Aligned_cols=208  Identities=15%  Similarity=0.122  Sum_probs=151.2

Q ss_pred             hhcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh-----
Q 022216           61 NVSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        61 ~~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      .++++||++|||||+++||++++++|+++|++|++.+|+.+++++...   ....++.++.+|++| ++++.+.+     
T Consensus         3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~   81 (259)
T d2ae2a_           3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVAN   81 (259)
T ss_dssp             TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC-HHHHHHHHHHHHH
Confidence            368899999999999999999999999999999999999877765432   245678899999999 65555443     


Q ss_pred             --cCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          133 --GDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                        .+++|++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||.....   +.      
T Consensus        82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~---~~------  152 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL---AV------  152 (259)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS---CC------
T ss_pred             HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc---cc------
Confidence              3249999999997543        356678899999999998887    344567999999986432   11      


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec---------cccccccCCCCHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME---------TEDTLYEGTISRDQVAE  262 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~---------~~~~~~~~~v~~~Dva~  262 (301)
                         .....|..+|.+.+.+.+       .+||+++.|.||++.|++........         ....+...+..++|+|+
T Consensus       153 ---~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~pedvA~  229 (259)
T d2ae2a_         153 ---PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAA  229 (259)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHH
T ss_pred             ---ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCCCCcCHHHHHH
Confidence               124667888888876553       47999999999999987532111000         01112234678999999


Q ss_pred             HHHHHhcCCCCC---CcEEEeec
Q 022216          263 VAVEALLHPESS---YKVVEIIS  282 (301)
Q Consensus       263 ~~~~~l~~~~~~---~~~~~v~~  282 (301)
                      +++ +|.++.+.   |+++.+.+
T Consensus       230 ~v~-fL~S~~s~~itG~~i~VDG  251 (259)
T d2ae2a_         230 MVA-FLCFPAASYVTGQIIYVDG  251 (259)
T ss_dssp             HHH-HHHSGGGTTCCSCEEEEST
T ss_pred             HHH-HHhCchhCCCcCcEEEECC
Confidence            985 55566544   44555544

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=6.3e-28  Score=202.10  Aligned_cols=222  Identities=26%  Similarity=0.327  Sum_probs=169.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCe--EEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFA--VKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +++||||||||+||+++++.|+++|++  |+.+.|++++...+    ..+++++.+|+++ .+.+.+++++ +|+|||+|
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~----~~~~~~~~~d~~~-~~~~~~~~~~-~d~vi~~a   76 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI----GGEADVFIGDITD-ADSINPAFQG-IDALVILT   76 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT----TCCTTEEECCTTS-HHHHHHHHTT-CSEEEECC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc----cCCcEEEEeeecc-cccccccccc-ceeeEEEE
Confidence            689999999999999999999999965  66667877665543    3688999999999 8999999999 99999999


Q ss_pred             CCCCC-----------------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          144 GFQPG-----------------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       144 g~~~~-----------------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      +....                 .++.....+|+.++.++++.+.....+++.+.|+...+.....       ........
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-------~~~~~~~~  149 (252)
T d2q46a1          77 SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP-------LNKLGNGN  149 (252)
T ss_dssp             CCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG-------GGGGGGCC
T ss_pred             eeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc-------cccccccc
Confidence            85431                 2334456788999999999999888889999988765432211       11122345


Q ss_pred             HHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCceeec-cc---cccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeec
Q 022216          207 TLIAKLQAEQYIRKSGINYTIIRPGGLRNEPPTGNIIME-TE---DTLYEGTISRDQVAEVAVEALLHPESSYKVVEIIS  282 (301)
Q Consensus       207 y~~sK~~~e~~~~~~~i~~~~irpg~v~~~~~~~~~~~~-~~---~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~  282 (301)
                      |...+...+.+....+++++++||++++|+......... ..   .....++++++|+|++++.+|.++...+++||+++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~a~~~~l~~~~~~g~~~~i~~  229 (252)
T d2q46a1         150 ILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGS  229 (252)
T ss_dssp             HHHHHHHHHHHHHHSSSCEEEEEECEEECSCTTSSCEEEESTTGGGGSSCCEEEHHHHHHHHHHHTTCGGGTTEEEEEEE
T ss_pred             hhhhhhhhhhhhhcccccceeecceEEECCCcchhhhhhccCcccccCCCCeEEHHHHHHHHHHHhCCccccCcEEEEee
Confidence            677788888888889999999999999998654332221 11   12224589999999999999999988899999998


Q ss_pred             CCCCCCcCHHHHHHHhhc
Q 022216          283 RVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       283 ~~~~~~~s~~e~~~~i~~  300 (301)
                      ++.+...+++|+.+++.+
T Consensus       230 ~~~~~~~~~~~~~~lf~~  247 (252)
T d2q46a1         230 KPEGTSTPTKDFKALFSQ  247 (252)
T ss_dssp             CCTTTSCCCCCHHHHHTT
T ss_pred             CCCCCChhHHHHHHHHHH
Confidence            765566666666665543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.95  E-value=1.3e-28  Score=210.72  Aligned_cols=207  Identities=15%  Similarity=0.156  Sum_probs=149.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcC------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGD------  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~------  134 (301)
                      ++++|++|||||+++||++++++|+++|++|++++|+.+++++...+  ....+.++.+|++| ++++.+.+..      
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999998777654432  34568889999999 6666555432      


Q ss_pred             CCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 DSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      ++|++|||||....          ++|+..+++|+.|++++++++.    +.+.+++|++||...+....+         
T Consensus        82 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~---------  152 (268)
T d2bgka1          82 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG---------  152 (268)
T ss_dssp             CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT---------
T ss_pred             CcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccc---------
Confidence            49999999996432          2355678999999999998873    345579999999864322111         


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc---------ccccccCCCCHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET---------EDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~---------~~~~~~~~v~~~Dva~~~  264 (301)
                        ....|..+|.+.+.+.+       .+||+++.|.||++.|++.........         .......+..++|+|+++
T Consensus       153 --~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pedvA~~v  230 (268)
T d2bgka1         153 --VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAV  230 (268)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHH
T ss_pred             --cccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccCCCCcCHHHHHHHH
Confidence              12357788888776543       479999999999999997654322111         011223467899999999


Q ss_pred             HHHhcCCCCC---CcEEEeec
Q 022216          265 VEALLHPESS---YKVVEIIS  282 (301)
Q Consensus       265 ~~~l~~~~~~---~~~~~v~~  282 (301)
                      + +|.++.+.   |+++.|.+
T Consensus       231 ~-fL~S~~s~~itGq~i~VDG  250 (268)
T d2bgka1         231 A-YLAGDESKYVSGLNLVIDG  250 (268)
T ss_dssp             H-HHHSGGGTTCCSCEEEEST
T ss_pred             H-HHhChhhCCccCceEEECc
Confidence            5 55555544   45555544

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.95  E-value=4.6e-29  Score=211.32  Aligned_cols=205  Identities=16%  Similarity=0.131  Sum_probs=146.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHH-------hc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEA-------IG  133 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~-------~~  133 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.+.+++....  ...++.++.+|++| ++++.+.       ++
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999998776654322  34688999999999 6555544       44


Q ss_pred             CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCC-CEEEEecccccccccCCCCCCcchhh
Q 022216          134 DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGV-NRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      . +|++|||||....        ++|+..+++|+.+++++++++.    +.+. ++||++||...+-   +.+       
T Consensus        82 ~-iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~---~~~-------  150 (251)
T d1zk4a1          82 P-VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV---GDP-------  150 (251)
T ss_dssp             S-CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---CCT-------
T ss_pred             C-ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec---cCC-------
Confidence            5 9999999997543        3466688999999999999873    3343 4899999986432   211       


Q ss_pred             cchhhHHHHHHHHHHHHH---------HHcCCcEEEEecCcccCCCCCCce----eec-cccccccCCCCHHHHHHHHHH
Q 022216          201 LNVFGLTLIAKLQAEQYI---------RKSGINYTIIRPGGLRNEPPTGNI----IME-TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~---------~~~~i~~~~irpg~v~~~~~~~~~----~~~-~~~~~~~~~v~~~Dva~~~~~  266 (301)
                        ....|..+|.+.+.+.         .++||+++.|.||.+.|++.....    ... ........+..++|+|++++ 
T Consensus       151 --~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~-  227 (251)
T d1zk4a1         151 --SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICV-  227 (251)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHHHHHHH-
T ss_pred             --CchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhCCCCCCCcCHHHHHHHHH-
Confidence              2356777777765433         246899999999999987532211    011 11112233568999999985 


Q ss_pred             HhcCCCCC---CcEEEeec
Q 022216          267 ALLHPESS---YKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~~~---~~~~~v~~  282 (301)
                      +|.++.+.   |+++.+.+
T Consensus       228 fL~S~~s~~itG~~i~vDG  246 (251)
T d1zk4a1         228 YLASNESKFATGSEFVVDG  246 (251)
T ss_dssp             HHHSGGGTTCCSCEEEEST
T ss_pred             HHhCchhCCCcCcEEEECc
Confidence            55566544   44555544

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.95  E-value=7.4e-29  Score=211.29  Aligned_cols=205  Identities=19%  Similarity=0.152  Sum_probs=144.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc-hhhhcc----ccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD-KAKTTL----SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~-~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      |+||++|||||+++||+++|++|+++|++|++.+|+.. .+++..    .....++.++.+|++| .+++.+.+..    
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999753 333322    1235688999999999 7666655432    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||.+....   .        
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~---~--------  149 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA---S--------  149 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---C--------
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceec---c--------
Confidence              49999999997543        356778899999999988887    4455679999999874321   1        


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc----------------ccccccCCCCH
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET----------------EDTLYEGTISR  257 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~----------------~~~~~~~~v~~  257 (301)
                       .....|..+|.+.+.+.+       .+||+++.|.||++.|++.........                ...+...+..+
T Consensus       150 -~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~p  228 (260)
T d1x1ta1         150 -ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTP  228 (260)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCH
T ss_pred             -CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCCCCcCH
Confidence             124668888888876553       478999999999999987543321100                00112246689


Q ss_pred             HHHHHHHHHHhcCCCCCC---cEEEeec
Q 022216          258 DQVAEVAVEALLHPESSY---KVVEIIS  282 (301)
Q Consensus       258 ~Dva~~~~~~l~~~~~~~---~~~~v~~  282 (301)
                      +|+|++++ +|+++.+.+   +++.+.+
T Consensus       229 ediA~~v~-fL~S~~a~~itG~~i~vDG  255 (260)
T d1x1ta1         229 EQLGGTAV-FLASDAAAQITGTTVSVDG  255 (260)
T ss_dssp             HHHHHHHH-HHHSGGGTTCCSCEEEEST
T ss_pred             HHHHHHHH-HHhChhhCCCcCCEEEECc
Confidence            99999995 555665444   4444444

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.1e-29  Score=210.18  Aligned_cols=204  Identities=16%  Similarity=0.138  Sum_probs=148.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      +++||++|||||+++||+++++.|+++|++|++++|+.+.++++.. ...++.++.+|++| .+++++.++.      ++
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~i   80 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ-ELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRL   80 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hcCCCeEEEccCCC-HHHHHHHHHHHHHhcCCC
Confidence            5689999999999999999999999999999999999887776654 33578899999999 6665554432      49


Q ss_pred             CEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcch
Q 022216          137 EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       137 d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      |++|||||....         ++|+..+++|+.+++++++++.    +.+ ++||++||...+..            ...
T Consensus        81 DilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~------------~~~  147 (250)
T d1ydea1          81 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIG------------QAQ  147 (250)
T ss_dssp             CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHC------------CTT
T ss_pred             CEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCccccccccccc------------ccC
Confidence            999999996431         2466788999999999999873    334 79999999874321            122


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----------ccccccccCCCCHHHHHHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----------ETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----------~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                      ...|..+|.+.+.+.+       .+||+++.|.||++.|++.......          .....+...+..++|+|++++.
T Consensus       148 ~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eva~~v~f  227 (250)
T d1ydea1         148 AVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVF  227 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHHHHH
T ss_pred             cchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            4678888888876543       4799999999999998753221100          0011122346799999999965


Q ss_pred             HhcCCC--CCCcEEEeec
Q 022216          267 ALLHPE--SSYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~  282 (301)
                      ++ ++.  ..|+++.+.+
T Consensus       228 L~-Sda~~itG~~i~vDG  244 (250)
T d1ydea1         228 LA-SEANFCTGIELLVTG  244 (250)
T ss_dssp             HH-HHCTTCCSCEEEEST
T ss_pred             Hh-CccCCCcCCeEEECC
Confidence            54 442  2445555544

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=5.6e-28  Score=213.12  Aligned_cols=227  Identities=15%  Similarity=0.069  Sum_probs=168.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-----hhhccc----cCCCCeEEEEccCCCChHhHHHHhcC-C
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-----AKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD-D  135 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-----~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~-~  135 (301)
                      .|++||||||||||+++++.|+++|++|++++|..+.     ...+..    .....+.++.+|+++ .+.+.+.+.. +
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~-~~~~~~~~~~~~   79 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTD-ASSLRRWIDVIK   79 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTC-HHHHHHHHHHHC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccC-HHHHHHHHhhhc
Confidence            3799999999999999999999999999999996432     121111    123578899999999 8888888765 5


Q ss_pred             CCEEEEccCCCCC----CCCCCceeeehHHHHHHHHHHHHc-----CCCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          136 SEAVVCATGFQPG----WDLFAPWKVDNFGTVNLVEACRKR-----GVNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~-----~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                      +|+|||+|+....    +++...+++|+.++.++++++++.     ...++++.||..+|+.... +..+ ..+..|.+.
T Consensus        80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~-~~~E-~~~~~p~~~  157 (339)
T d1n7ha_          80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSE-TTPFHPRSP  157 (339)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCT-TSCCCCCSH
T ss_pred             cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCC-CCCC-CCCCCCcch
Confidence            8999999987542    355567789999999999999654     2347888888877765443 2233 334567889


Q ss_pred             HHHHHHHHHHHHH----HcCCcEEEEecCcccCCCCCCce-------------------eeccccccccCCCCHHHHHHH
Q 022216          207 TLIAKLQAEQYIR----KSGINYTIIRPGGLRNEPPTGNI-------------------IMETEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       207 y~~sK~~~e~~~~----~~~i~~~~irpg~v~~~~~~~~~-------------------~~~~~~~~~~~~v~~~Dva~~  263 (301)
                      |+.+|..+|+++.    .++++++++||++++||......                   ...+......++++++|+|++
T Consensus       158 Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~  237 (339)
T d1n7ha_         158 YAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEA  237 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHH
Confidence            9999999998763    47999999999999998543321                   111222333468999999999


Q ss_pred             HHHHhcCCCCCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          264 AVEALLHPESSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       264 ~~~~l~~~~~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +..++..+..  ..+++..+   ...++.|+++.+.+
T Consensus       238 ~~~~~~~~~~--~~~~~~~~---~~~s~~~~~~~~~~  269 (339)
T d1n7ha_         238 MWLMLQQEKP--DDYVVATE---EGHTVEEFLDVSFG  269 (339)
T ss_dssp             HHHHHTSSSC--CEEEECCS---CEEEHHHHHHHHHH
T ss_pred             HHHHHhcCCC--Cccccccc---cccccchhhhhhhh
Confidence            9999988753  34555554   88899999887754

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-28  Score=208.93  Aligned_cols=206  Identities=16%  Similarity=0.145  Sum_probs=153.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +||++|||||+++||++++++|+++|++|++++|+.+++++...+     ...++.++.+|++| .+++++.+..     
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC-HHHHHHHHHHHHHHc
Confidence            589999999999999999999999999999999998776553321     24578899999999 7666554432     


Q ss_pred             -CCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHH----c--C-CCEEEEecccccccccCCCCCCcchhhcchhhH
Q 022216          135 -DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK----R--G-VNRFILISSILVNGAAMGQILNPAYIFLNVFGL  206 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~----~--~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
                       ++|++|||||.....+|+..+++|+.+++++.+++.+    .  + .++||++||.+.+-   +.         .....
T Consensus        81 G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~---~~---------~~~~~  148 (254)
T d2gdza1          81 GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM---PV---------AQQPV  148 (254)
T ss_dssp             SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---CC---------TTCHH
T ss_pred             CCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc---CC---------CCccc
Confidence             4999999999988889999999999999988888732    2  1 26799999987432   11         12356


Q ss_pred             HHHHHHHHHHHH---------HHcCCcEEEEecCcccCCCCCCceeec---c---------ccccccCCCCHHHHHHHHH
Q 022216          207 TLIAKLQAEQYI---------RKSGINYTIIRPGGLRNEPPTGNIIME---T---------EDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       207 y~~sK~~~e~~~---------~~~~i~~~~irpg~v~~~~~~~~~~~~---~---------~~~~~~~~v~~~Dva~~~~  265 (301)
                      |..+|.+.+.+.         ..+||+++.|.||.+.|++........   .         .......+..++|+|++++
T Consensus       149 Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~  228 (254)
T d2gdza1         149 YCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLI  228 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            777777665442         347899999999999987533211100   0         0011124678999999998


Q ss_pred             HHhcCCCCCCcEEEeecC
Q 022216          266 EALLHPESSYKVVEIISR  283 (301)
Q Consensus       266 ~~l~~~~~~~~~~~v~~~  283 (301)
                      .++.++...|+++.|.++
T Consensus       229 fL~s~~~itG~~i~VdGG  246 (254)
T d2gdza1         229 TLIEDDALNGAIMKITTS  246 (254)
T ss_dssp             HHHHCTTCSSCEEEEETT
T ss_pred             HHHcCCCCCCCEEEECCC
Confidence            777766667888888775

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.95  E-value=1.4e-28  Score=209.34  Aligned_cols=206  Identities=15%  Similarity=0.120  Sum_probs=147.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch-hhhc---cccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK-AKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~-~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.+. +++.   ......++..+++|++| ++++.+++..    
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~   82 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKE   82 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999998653 2222   22245688999999999 6655554432    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCC-CEEEEecccccccccCCCCCCcchh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGV-NRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        ++|++|||||....        ++|+..+++|+.+++++++++    ++.+. ++||++||.+.+.   +.       
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~---~~-------  152 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI---PW-------  152 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS---CC-------
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc---cC-------
Confidence              49999999997543        356778999999999998887    34443 4699999986432   11       


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec------cccccccCCCCHHHHHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME------TEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~------~~~~~~~~~v~~~Dva~~~~~  266 (301)
                        .....|..+|.+.+.+.+       .+||+++.|.||++.|++........      ....+...+..++|+|++++ 
T Consensus       153 --~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~-  229 (261)
T d1geea_         153 --PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAA-  229 (261)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHH-
T ss_pred             --ccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCCCCCCHHHHHHHHH-
Confidence              224667888888876543       47999999999999998643321100      01112234568999999995 


Q ss_pred             HhcCCCC---CCcEEEeec
Q 022216          267 ALLHPES---SYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~~---~~~~~~v~~  282 (301)
                      +|.++.+   .|+++.|.+
T Consensus       230 fL~S~~s~~itG~~i~vDG  248 (261)
T d1geea_         230 WLASSEASYVTGITLFADG  248 (261)
T ss_dssp             HHHSGGGTTCCSCEEEEST
T ss_pred             HHhCchhcCCcCCeEEECC
Confidence            5556654   455555544

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.95  E-value=8e-29  Score=210.98  Aligned_cols=204  Identities=15%  Similarity=0.124  Sum_probs=148.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc---ccCCCCeEEEEccCCCChHhHHHHh-------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAI-------  132 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~-------  132 (301)
                      +++||++|||||+++||+++++.|+++|++|++++|+.+++++..   .....++..+.+|++| ++++.+.+       
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~   80 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence            467999999999999999999999999999999999987766543   2245688999999999 65555544       


Q ss_pred             cCCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchh
Q 022216          133 GDDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                      +. +|++|||||....         ++|+..+++|+.+++++++++    ++.+.++||++||.+.+...          
T Consensus        81 g~-iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~----------  149 (260)
T d1zema1          81 GK-IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP----------  149 (260)
T ss_dssp             SC-CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC----------
T ss_pred             CC-CCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCC----------
Confidence            45 9999999996532         246678899999999999887    33456799999998754221          


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce------------eec--------ccccccc
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI------------IME--------TEDTLYE  252 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~------------~~~--------~~~~~~~  252 (301)
                        .....|..+|.+.+.+.+       .+||+++.|.||++.|++.....            ...        ....+..
T Consensus       150 --~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~  227 (260)
T d1zema1         150 --PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMR  227 (260)
T ss_dssp             --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTS
T ss_pred             --cchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCCCC
Confidence              124678888888876553       47999999999999998532110            000        0011123


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCC---cEEEee
Q 022216          253 GTISRDQVAEVAVEALLHPESSY---KVVEII  281 (301)
Q Consensus       253 ~~v~~~Dva~~~~~~l~~~~~~~---~~~~v~  281 (301)
                      .+..++|+|+++ .+|.++.+.+   +++.|.
T Consensus       228 R~g~pedvA~~v-~fL~S~~s~~itG~~i~VD  258 (260)
T d1zema1         228 RYGDINEIPGVV-AFLLGDDSSFMTGVNLPIA  258 (260)
T ss_dssp             SCBCGGGSHHHH-HHHHSGGGTTCCSCEEEES
T ss_pred             CCcCHHHHHHHH-HHHhCchhcCccCCeEEeC
Confidence            356899999998 4566665544   444443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.95  E-value=7.1e-28  Score=204.68  Aligned_cols=207  Identities=17%  Similarity=0.132  Sum_probs=146.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhc-----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIG-----  133 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~-----  133 (301)
                      +++++|++|||||+++||++++++|+++|++|++.+|+++++++...   .....+.++.+|+++ .+++++.+.     
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~-~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHV   80 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC-HHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999876655332   255778899999999 665555442     


Q ss_pred             --CCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchh
Q 022216          134 --DDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYI  199 (301)
Q Consensus       134 --~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~  199 (301)
                        +++|+||||||....        ++|..++++|+.+++++.+++    ++.+.+++|++||......   .       
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~---~-------  150 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA---L-------  150 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC---C-------
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccc---c-------
Confidence              249999999997543        346677899999999998877    3445689999999874321   1       


Q ss_pred             hcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc----------cccccCCCCHHHHHH
Q 022216          200 FLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE----------DTLYEGTISRDQVAE  262 (301)
Q Consensus       200 ~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~----------~~~~~~~v~~~Dva~  262 (301)
                        .....|..+|.+.+.+.+       ..||+++.|.||++.|++..........          ..+...+..++|+|+
T Consensus       151 --~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plgR~~~pediA~  228 (258)
T d1ae1a_         151 --PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSA  228 (258)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCSCBCHHHHHH
T ss_pred             --ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHH
Confidence              124567788888876553       4689999999999999875443221110          112234679999999


Q ss_pred             HHHHHhcCCCC---CCcEEEeec
Q 022216          263 VAVEALLHPES---SYKVVEIIS  282 (301)
Q Consensus       263 ~~~~~l~~~~~---~~~~~~v~~  282 (301)
                      +++. |.++.+   .|+++.|.+
T Consensus       229 ~v~f-L~S~~s~~itG~~i~vDG  250 (258)
T d1ae1a_         229 LIAF-LCFPAASYITGQIIWADG  250 (258)
T ss_dssp             HHHH-HHSGGGTTCCSCEEEEST
T ss_pred             HHHH-HhChhhCCCcCcEEEeCC
Confidence            9855 445443   455666554

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.95  E-value=1.5e-28  Score=209.11  Aligned_cols=203  Identities=18%  Similarity=0.195  Sum_probs=147.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ||++|||||+++||++++++|+++|++|++.+|+++++++...   ....++.++++|++| ++++.+.++.      ++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHhCCC
Confidence            7999999999999999999999999999999999877665432   245689999999999 6655554432      49


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH------cCCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK------RGVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~------~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                      |++|||||....        ++|+..+++|+.+++++++++.+      .+.++||++||...+...            .
T Consensus        81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~------------~  148 (257)
T d2rhca1          81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV------------V  148 (257)
T ss_dssp             SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCC------------T
T ss_pred             CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccccc------------c
Confidence            999999997543        35677899999999999998843      345699999998643211            1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee--------------ec-cccccccCCCCHHHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII--------------ME-TEDTLYEGTISRDQV  260 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~--------------~~-~~~~~~~~~v~~~Dv  260 (301)
                      ....|..+|.+.+.+.+       .+||+++.|.||++.|++......              .. ....+...+..++|+
T Consensus       149 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~PlgR~~~pedi  228 (257)
T d2rhca1         149 HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEV  228 (257)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCCCCcCHHHH
Confidence            24668888888876553       368999999999999875322100              00 011112346689999


Q ss_pred             HHHHHHHhcCCCCC---CcEEEeec
Q 022216          261 AEVAVEALLHPESS---YKVVEIIS  282 (301)
Q Consensus       261 a~~~~~~l~~~~~~---~~~~~v~~  282 (301)
                      |++++ +|.++.+.   |+++.+.+
T Consensus       229 a~~v~-fL~S~~s~~itG~~i~vDG  252 (257)
T d2rhca1         229 AEMVA-YLIGPGAAAVTAQALNVCG  252 (257)
T ss_dssp             HHHHH-HHTSGGGTTCCSCEEEEST
T ss_pred             HHHHH-HHhCchhcCCcCceEEECc
Confidence            99984 66666544   45555544

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.95  E-value=1.9e-28  Score=207.69  Aligned_cols=205  Identities=16%  Similarity=0.135  Sum_probs=148.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-------hcCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~~  135 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.++++++..+...+..++++|++| .+++.+.       ++. 
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~-   80 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGT-   80 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCS-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCC-HHHHHHHHHHHHHHhCC-
Confidence            5689999999999999999999999999999999999888777665556788999999999 6544444       445 


Q ss_pred             CCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          136 SEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      +|++|||||....        ++|+..+++|+.+++++++++.+   .+.++||++||.+.+.   +.         ...
T Consensus        81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~---~~---------~~~  148 (253)
T d1hxha_          81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL---PI---------EQY  148 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS---CC---------TTB
T ss_pred             CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc---Cc---------ccc
Confidence            9999999997543        34677889999999999988732   2237999999987432   11         123


Q ss_pred             hHHHHHHHHHHHHHH-------H--cCCcEEEEecCcccCCCCCCce--------eecc-ccccccCCCCHHHHHHHHHH
Q 022216          205 GLTLIAKLQAEQYIR-------K--SGINYTIIRPGGLRNEPPTGNI--------IMET-EDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~--~~i~~~~irpg~v~~~~~~~~~--------~~~~-~~~~~~~~v~~~Dva~~~~~  266 (301)
                      ..|..+|.+.+.+.+       .  ++|+++.|.||++.|++.....        .... .......+..++|+|++++ 
T Consensus       149 ~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pedvA~~v~-  227 (253)
T d1hxha_         149 AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVL-  227 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHHHHHHHHH-
T ss_pred             ccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHHhCccccccCCCCCHHHHHHHHH-
Confidence            567778877765442       2  4699999999999987432111        0011 1111223568999999995 


Q ss_pred             HhcCCCC---CCcEEEeec
Q 022216          267 ALLHPES---SYKVVEIIS  282 (301)
Q Consensus       267 ~l~~~~~---~~~~~~v~~  282 (301)
                      +|.++.+   .|+++.+.+
T Consensus       228 fL~S~~s~~itG~~i~VDG  246 (253)
T d1hxha_         228 FLASDESSVMSGSELHADN  246 (253)
T ss_dssp             HHHSGGGTTCCSCEEEESS
T ss_pred             HHhChhhCCCcCcEEEECc
Confidence            5555554   455555544

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=8.4e-28  Score=201.52  Aligned_cols=199  Identities=17%  Similarity=0.222  Sum_probs=147.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +++|++|||||+++||++++++|+++|++|++.+|+.+.+++      ....++.+|+++..+.+.+.+++ +|++||||
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~------~~~~~~~~Dv~~~~~~~~~~~g~-iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR------SGHRYVVCDLRKDLDLLFEKVKE-VDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH------TCSEEEECCTTTCHHHHHHHSCC-CSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh------cCCcEEEcchHHHHHHHHHHhCC-CcEEEecc
Confidence            579999999999999999999999999999999998776654      24467889999866788888888 99999999


Q ss_pred             CCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHH
Q 022216          144 GFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAK  211 (301)
Q Consensus       144 g~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK  211 (301)
                      |....        ++|+..+++|+.+++++++++    ++.+.+++|+++|.......            .....|..+|
T Consensus        75 G~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~------------~~~~~Y~asK  142 (234)
T d1o5ia_          75 GGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI------------ENLYTSNSAR  142 (234)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------TTBHHHHHHH
T ss_pred             cccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccc------------cccccchhHH
Confidence            96542        346677899999999998887    44556799999998643211            1235677778


Q ss_pred             HHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec-----cccccccCCCCHHHHHHHHHHHhcCCCCC---Cc
Q 022216          212 LQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME-----TEDTLYEGTISRDQVAEVAVEALLHPESS---YK  276 (301)
Q Consensus       212 ~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l~~~~~~---~~  276 (301)
                      .+.+.+.+       .+||+++.|.||++.+++........     ....+...+..++|+|++++ +|.++.+.   |+
T Consensus       143 aal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~-fL~S~~s~~itG~  221 (234)
T d1o5ia_         143 MALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAKPEEIASVVA-FLCSEKASYLTGQ  221 (234)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHHHHHHHHH-HHHSGGGTTCCSC
T ss_pred             HHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHH-HHhChhhcCCcCc
Confidence            87775443       47999999999999998643321100     11122234678999999985 55566544   55


Q ss_pred             EEEeec
Q 022216          277 VVEIIS  282 (301)
Q Consensus       277 ~~~v~~  282 (301)
                      ++.+.+
T Consensus       222 ~i~vDG  227 (234)
T d1o5ia_         222 TIVVDG  227 (234)
T ss_dssp             EEEEST
T ss_pred             EEEECc
Confidence            555544

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.95  E-value=7.5e-28  Score=204.38  Aligned_cols=201  Identities=21%  Similarity=0.209  Sum_probs=144.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHh-------cCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAI-------GDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~-------~~~~  136 (301)
                      |++|||||+++||++++++|+++|++|++.+|+++++++...   ....++.++.+|++| ++++.+.+       +. +
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~-i   79 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGG-F   79 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTC-C
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHhCC-c
Confidence            678999999999999999999999999999999877665432   245688999999999 65555544       45 9


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcC-CCEEEEecccccccccCCCCCCcchhhcch
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRG-VNRFILISSILVNGAAMGQILNPAYIFLNV  203 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~-~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~  203 (301)
                      |++|||||+...        ++|+..+++|+.|++++++++.    +.+ .++||++||.+.+..            ...
T Consensus        80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~------------~~~  147 (255)
T d1gega_          80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVG------------NPE  147 (255)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------CTT
T ss_pred             cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhccc------------Ccc
Confidence            999999997543        3567788999999999998862    333 467999999864321            112


Q ss_pred             hhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee--------------ec-cccccccCCCCHHHHH
Q 022216          204 FGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII--------------ME-TEDTLYEGTISRDQVA  261 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~--------------~~-~~~~~~~~~v~~~Dva  261 (301)
                      ...|..+|.+.+.+.+       .+||+++.|.||++.|++......              .. ....+...+..++|+|
T Consensus       148 ~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA  227 (255)
T d1gega_         148 LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVA  227 (255)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHH
T ss_pred             cccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCCcCHHHHH
Confidence            4667888888876543       479999999999999875322100              00 0111223467899999


Q ss_pred             HHHHHHhcCCCCCC---cEEEeec
Q 022216          262 EVAVEALLHPESSY---KVVEIIS  282 (301)
Q Consensus       262 ~~~~~~l~~~~~~~---~~~~v~~  282 (301)
                      ++++ +|.++.+.+   +++.+.+
T Consensus       228 ~~v~-fL~S~~a~~itG~~i~vDG  250 (255)
T d1gega_         228 ACVS-YLASPDSDYMTGQSLLIDG  250 (255)
T ss_dssp             HHHH-HHHSGGGTTCCSCEEEESS
T ss_pred             HHHH-HHhCchhCCccCcEEEecC
Confidence            9985 555665544   4455444

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=4.5e-28  Score=206.86  Aligned_cols=208  Identities=18%  Similarity=0.147  Sum_probs=140.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.+++++...+      ...++.++.+|++| .+++.+.+..  
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~   80 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTL   80 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC-HHHHHHHHHHHH
Confidence            46799999999999999999999999999999999998776654321      23468999999999 6655554432  


Q ss_pred             ----CCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCC
Q 022216          135 ----DSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILN  195 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~  195 (301)
                          ++|++|||||....            ++|+..+++|+.+++++++++.+   .+.+++|+++|...  ...+.   
T Consensus        81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~--~~~~~---  155 (264)
T d1spxa_          81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIAS--GLHAT---  155 (264)
T ss_dssp             HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTS--SSSCC---
T ss_pred             HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecc--ccccC---
Confidence                49999999996421            24666789999999999988732   12356777666532  11111   


Q ss_pred             cchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccc------------c-ccccCCC
Q 022216          196 PAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETE------------D-TLYEGTI  255 (301)
Q Consensus       196 ~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~------------~-~~~~~~v  255 (301)
                            .....|..+|.+.+.+.+       .+||+++.|.||++.|++..........            . .+...+.
T Consensus       156 ------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g  229 (264)
T d1spxa_         156 ------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMG  229 (264)
T ss_dssp             ------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCB
T ss_pred             ------CCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCCCCCc
Confidence                  123567888888775543       4799999999999999865432211000            0 1122356


Q ss_pred             CHHHHHHHHHHHhcCCC---CCCcEEEeec
Q 022216          256 SRDQVAEVAVEALLHPE---SSYKVVEIIS  282 (301)
Q Consensus       256 ~~~Dva~~~~~~l~~~~---~~~~~~~v~~  282 (301)
                      .++|+|++++.++.++.   ..|+++.+.+
T Consensus       230 ~pedvA~~v~fL~S~~~s~~itG~~i~vDG  259 (264)
T d1spxa_         230 QPQDIAEVIAFLADRKTSSYIIGHQLVVDG  259 (264)
T ss_dssp             CHHHHHHHHHHHHCHHHHTTCCSCEEEEST
T ss_pred             CHHHHHHHHHHHhCCcccCCccCceEEeCC
Confidence            89999999965443243   3455666554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=206.05  Aligned_cols=205  Identities=18%  Similarity=0.164  Sum_probs=146.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--------cCCCCeEEEEccCCCChHhHHHHhcC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--------KDNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      .++||++|||||+++||++++++|+++|++|++.+|+.+++++...        ....++..+.+|++| ++++.+.+..
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~   87 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVKS   87 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC-HHHHHHHHHH
Confidence            4689999999999999999999999999999999999876554321        134678999999999 6665554432


Q ss_pred             ------CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCc
Q 022216          135 ------DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       135 ------~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                            ++|++|||||....        ++|+..+++|+.+++++++++.    +.+.++||++||....    ..    
T Consensus        88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~----~~----  159 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA----GF----  159 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT----CC----
T ss_pred             HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc----cc----
Confidence                  49999999996542        3567788999999999999873    3345688888764321    11    


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------cc-ccccCCCCHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------ED-TLYEGTISRDQVA  261 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~-~~~~~~v~~~Dva  261 (301)
                           .....|..+|.+.+.+.+       .+||+++.|.||.+.+++.........       .. .....+..++|+|
T Consensus       160 -----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plgR~g~pedvA  234 (297)
T d1yxma1         160 -----PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVS  234 (297)
T ss_dssp             -----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHH
T ss_pred             -----cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCCCCcCHHHHH
Confidence                 123567788888876553       479999999999999986433221110       01 1123356899999


Q ss_pred             HHHHHHhcCCCC---CCcEEEeec
Q 022216          262 EVAVEALLHPES---SYKVVEIIS  282 (301)
Q Consensus       262 ~~~~~~l~~~~~---~~~~~~v~~  282 (301)
                      ++++ +|.++.+   .|+++.|.+
T Consensus       235 ~~v~-fL~Sd~s~~iTG~~i~VDG  257 (297)
T d1yxma1         235 SVVC-FLLSPAASFITGQSVDVDG  257 (297)
T ss_dssp             HHHH-HHHSGGGTTCCSCEEEEST
T ss_pred             HHHH-HHhCchhcCcCCcEEEeCc
Confidence            9985 5555554   455565554

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.94  E-value=4.7e-27  Score=197.49  Aligned_cols=194  Identities=16%  Similarity=0.196  Sum_probs=144.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCe-------EEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFA-------VKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~-------V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      ++||||||++|||++++++|+++|++       |++.+|+.+++++...   ..+.++.++.+|++| .+++.+.++.  
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~   80 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHIV   80 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHH
Confidence            46899999999999999999999987       8888998877665432   245678899999999 6555554432  


Q ss_pred             ----CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          135 ----DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                          ++|++|||||....        ++|+..+++|+.|++++++++    ++.+.++||++||.+.+...         
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~---------  151 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF---------  151 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCC---------
Confidence                49999999997542        456778999999999998887    44556799999998743221         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                         .....|..+|.+.+.+.+       .+||+++.|.||++.|++....     .+.....+..++|+|++++.++.++
T Consensus       152 ---~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~-----~~~~~~~~~~PedvA~~v~~l~s~~  223 (240)
T d2bd0a1         152 ---RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV-----DDEMQALMMMPEDIAAPVVQAYLQP  223 (240)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC-----CSTTGGGSBCHHHHHHHHHHHHTSC
T ss_pred             ---CCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc-----CHhhHhcCCCHHHHHHHHHHHHcCC
Confidence               124668888887775543       4799999999999999875432     1112224578999999998777665


Q ss_pred             CCCCcEEE
Q 022216          272 ESSYKVVE  279 (301)
Q Consensus       272 ~~~~~~~~  279 (301)
                      . .+.+..
T Consensus       224 ~-~~~~~~  230 (240)
T d2bd0a1         224 S-RTVVEE  230 (240)
T ss_dssp             T-TEEEEE
T ss_pred             c-cCccCC
Confidence            4 343433

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.94  E-value=6.7e-28  Score=205.31  Aligned_cols=214  Identities=15%  Similarity=0.147  Sum_probs=150.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      +++++|++|||||+++||++++++|+++|++|++.+|+.+++.+...    ..+.++.++.+|++| ++++.+.+..   
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~   83 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDA   83 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999887655332    235688999999999 7666555432   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHH-----HcCCCEEEEecccccccccCCCCCCcch
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~-----~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         ++|++|||||....        ++|+..+++|+.|++++++++.     +.+.++++.++|...+.....     ..
T Consensus        84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~-----~~  158 (260)
T d1h5qa_          84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS-----SL  158 (260)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE-----ET
T ss_pred             HhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccc-----cc
Confidence               49999999997543        3567788999999999988762     234457777777654321111     11


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee---c-cccccccCCCCHHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM---E-TEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~---~-~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ........|..+|.+.+.+.+       .+||+++.|.||.+.+++.......   . ....+...+..++|+|++++ +
T Consensus       159 ~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~g~pedvA~~v~-f  237 (260)
T d1h5qa_         159 NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAI-L  237 (260)
T ss_dssp             TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCGGGGHHHHH-H
T ss_pred             ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccCHHHHHHHHhcCCCCCCcCHHHHHHHHH-H
Confidence            112234678899998876543       4799999999999999864432110   0 01112234678999999985 5


Q ss_pred             hcCCCCC---CcEEEeec
Q 022216          268 LLHPESS---YKVVEIIS  282 (301)
Q Consensus       268 l~~~~~~---~~~~~v~~  282 (301)
                      |.++.+.   |+++.+.+
T Consensus       238 L~S~~s~~itG~~i~VDG  255 (260)
T d1h5qa_         238 LLSDHATYMTGGEYFIDG  255 (260)
T ss_dssp             HHSGGGTTCCSCEEEECT
T ss_pred             HhcchhCCCcCceEEECC
Confidence            5566544   45555544

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-27  Score=199.10  Aligned_cols=192  Identities=12%  Similarity=0.099  Sum_probs=148.5

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      .+++||++|||||+++||++++++|+++|++|++.+|+.+++++...   ....++..+.+|++| .+++.+.++.    
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAE   81 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999887765433   355789999999999 6666554431    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        ++|++|||||....        ++|+.++++|+.|.+++++++    ++.+.++||++||...+.            +
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~------------~  149 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV------------S  149 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC------------C
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC------------C
Confidence              49999999997643        245678899999999988876    455668999999986431            1


Q ss_pred             cchhhHHHHHHHHHHHHHH-------H---cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcC
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------K---SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~---~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ...+..|..+|.+.+.+.+       .   .||+++.|.||++.|++..+.      .......+.++|+|+.++..+..
T Consensus       150 ~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~------~~~~~~~~~pe~va~~i~~~~~~  223 (244)
T d1yb1a_         150 VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP------STSLGPTLEPEEVVNRLMHGILT  223 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT------HHHHCCCCCHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc------CccccCCCCHHHHHHHHHHHHhc
Confidence            2335778999998876543       1   479999999999999875432      11222467899999999888776


Q ss_pred             CC
Q 022216          271 PE  272 (301)
Q Consensus       271 ~~  272 (301)
                      +.
T Consensus       224 ~~  225 (244)
T d1yb1a_         224 EQ  225 (244)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.94  E-value=1.6e-27  Score=200.61  Aligned_cols=204  Identities=17%  Similarity=0.180  Sum_probs=149.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC------CCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD------DSE  137 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~d  137 (301)
                      +++|++|||||+++||+++|++|+++|++|++.+|+.+++++...+.+.++.++++|++| ++++++.+..      ++|
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~-~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCC-HHHHHHHHHHHHHHhCCcc
Confidence            579999999999999999999999999999999999988877776667889999999999 7666554432      499


Q ss_pred             EEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          138 AVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       138 ~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      ++|||||....        ++|...+++|+.+.+++++++...  +.+.++++||.+..             ....+..|
T Consensus        82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~-------------~~~~~~~Y  148 (241)
T d2a4ka1          82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-------------GAFGLAHY  148 (241)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-------------CHHHHHHH
T ss_pred             Eeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-------------cccCcccc
Confidence            99999986542        246678899999999999998544  23456666665311             01225668


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee----ccccccccCCCCHHHHHHHHHHHhcCCCCCC-
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM----ETEDTLYEGTISRDQVAEVAVEALLHPESSY-  275 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~-  275 (301)
                      +.+|.+.+.+.+       .+||+++.|.||.+.|++..+....    .........+..++|+|++++ +|.++.+.+ 
T Consensus       149 ~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~-fL~S~~s~~i  227 (241)
T d2a4ka1         149 AAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEEVAQAAL-FLLSEESAYI  227 (241)
T ss_dssp             HHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCSCBCHHHHHHHHH-HHHSGGGTTC
T ss_pred             chhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCCCCCCcCHHHHHHHHH-HHhcchhCCC
Confidence            888888887654       3689999999999999865432110    011122234679999999995 555665444 


Q ss_pred             --cEEEeec
Q 022216          276 --KVVEIIS  282 (301)
Q Consensus       276 --~~~~v~~  282 (301)
                        +++.+.+
T Consensus       228 tG~~i~vDG  236 (241)
T d2a4ka1         228 TGQALYVDG  236 (241)
T ss_dssp             CSCEEEEST
T ss_pred             cCceEEeCC
Confidence              4554444

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.94  E-value=1.2e-27  Score=201.60  Aligned_cols=203  Identities=18%  Similarity=0.095  Sum_probs=144.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC-chhhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC------CC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL-DKAKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD------DS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~-~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~------~~  136 (301)
                      ++||||||+++||++++++|+++|++|++.+++. +.++++.   ...+.++.++++|++| .+++.+.++.      ++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999999999876543 3333322   2245688999999999 6666554432      49


Q ss_pred             CEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          137 EAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       137 d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      |++|||||....        ++|+..+++|+.+++++++++    ++.+.++||++||.+.+-.            ....
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~------------~~~~  148 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIG------------NIGQ  148 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC------------CTTC
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCC------------CCCC
Confidence            999999997543        356778999999999998887    4445689999999874321            1224


Q ss_pred             hHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---e-ccccccccCCCCHHHHHHHHHHHhcCCCC
Q 022216          205 GLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---M-ETEDTLYEGTISRDQVAEVAVEALLHPES  273 (301)
Q Consensus       205 ~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~  273 (301)
                      ..|..+|.+.+.+.+       .+||+++.|.||++.|++......   . .........+..++|+|++++.++.++.+
T Consensus       149 ~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fLa~S~~a  228 (244)
T d1edoa_         149 ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAA  228 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCSGG
T ss_pred             HHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHCCchh
Confidence            678888888876553       479999999999999875332210   0 01112223467899999999654447764


Q ss_pred             C---CcEEEeec
Q 022216          274 S---YKVVEIIS  282 (301)
Q Consensus       274 ~---~~~~~v~~  282 (301)
                      .   |+++.+.+
T Consensus       229 ~~itG~~i~vdG  240 (244)
T d1edoa_         229 SYITGQAFTIDG  240 (244)
T ss_dssp             GGCCSCEEEEST
T ss_pred             cCCcCCeEEeCC
Confidence            4   45555544

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.94  E-value=7.1e-27  Score=198.00  Aligned_cols=207  Identities=14%  Similarity=0.093  Sum_probs=150.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc----ccCCCCeEEEEccCCCChHhHHH-------H
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----SKDNPSLQIVKADVTEGSAKLSE-------A  131 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~-------~  131 (301)
                      ++++|+||||||++|||+++|++|+++|++|+++.|+.++.+...    .....++.++.+|++++.+++.+       .
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999877654332    12456889999999853433433       3


Q ss_pred             hcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHH----c---CCCEEEEecccccccccCCCCCCcchhhcchh
Q 022216          132 IGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRK----R---GVNRFILISSILVNGAAMGQILNPAYIFLNVF  204 (301)
Q Consensus       132 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~----~---~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~  204 (301)
                      ++. +|+||||||...+++|+.++++|+.|++++.+++.+    .   ..++||++||...+...            ..+
T Consensus        82 ~g~-iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~------------~~~  148 (254)
T d1sbya1          82 LKT-VDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI------------HQV  148 (254)
T ss_dssp             HSC-CCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------TTS
T ss_pred             cCC-CCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC------------CCC
Confidence            345 999999999988889999999999999999998732    1   23689999998754221            124


Q ss_pred             hHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCCCceeeccc------cccccCCCCHHHHHHHHHHHhcCC
Q 022216          205 GLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTGNIIMETE------DTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       205 ~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~~~~~~~~~------~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                      ..|..+|.+...+.       ..+||+++.|.||++.|++..........      ........+++++|++++.++...
T Consensus       149 ~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~~~~~~~  228 (254)
T d1sbya1         149 PVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEAN  228 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccccCCCCCHHHHHHHHHHhhhCC
Confidence            56777777776544       35799999999999999743221100000      011123457899999998887665


Q ss_pred             CCCCcEEEeecC
Q 022216          272 ESSYKVVEIISR  283 (301)
Q Consensus       272 ~~~~~~~~v~~~  283 (301)
                      . .|+++.+.++
T Consensus       229 ~-tG~vi~vdgG  239 (254)
T d1sbya1         229 K-NGAIWKLDLG  239 (254)
T ss_dssp             C-TTCEEEEETT
T ss_pred             C-CCCEEEECCC
Confidence            4 6777776663

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.94  E-value=9.3e-27  Score=204.70  Aligned_cols=231  Identities=16%  Similarity=0.159  Sum_probs=167.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC--chhhhcc-ccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL--DKAKTTL-SKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~--~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      +||||||+||||++++++|+++|++|+++++-.  .....+. .....+++++.+|++| .+.+.+++.+ ++|+|||+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~-~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN-KNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCC-HHHHHHHHHhcCCceEEeec
Confidence            699999999999999999999999999986432  2211110 0135789999999999 8999999876 589999999


Q ss_pred             CCCCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccC-CCCCC---------------cchhhcch
Q 022216          144 GFQPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAM-GQILN---------------PAYIFLNV  203 (301)
Q Consensus       144 g~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~-~~~~~---------------~~~~~~~~  203 (301)
                      +....    .++...+++|+.||.++++++.+.+++++|+.||..+++... ..+..               ....+..+
T Consensus        81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
T d1orra_          81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF  160 (338)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCC
T ss_pred             ccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcccc
Confidence            87542    245677899999999999999999987777777765543322 11100               01112346


Q ss_pred             hhHHHHHHHHHHHHH----HHcCCcEEEEecCcccCCCCCCc-----------------------eeeccccccccCCCC
Q 022216          204 FGLTLIAKLQAEQYI----RKSGINYTIIRPGGLRNEPPTGN-----------------------IIMETEDTLYEGTIS  256 (301)
Q Consensus       204 ~~~y~~sK~~~e~~~----~~~~i~~~~irpg~v~~~~~~~~-----------------------~~~~~~~~~~~~~v~  256 (301)
                      ...|+.+|...|.+.    +.+++....+++..++++...+.                       +...+......++++
T Consensus       161 ~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~  240 (338)
T d1orra_         161 HSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH  240 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEE
T ss_pred             ccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCceeEeeec
Confidence            688999999998765    35789999999988886543221                       112222333456899


Q ss_pred             HHHHHHHHHHHhcCCC-CCCcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          257 RDQVAEVAVEALLHPE-SSYKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       257 ~~Dva~~~~~~l~~~~-~~~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      ++|++++++.+++.+. ..++++++..+ .+..+++.|+++.+.+
T Consensus       241 v~D~~~~~~~~l~~~~~~~~~~~~i~~~-~~~~~s~~e~~~~i~~  284 (338)
T d1orra_         241 AEDMISLYFTALANVSKIRGNAFNIGGT-IVNSLSLLELFKLLED  284 (338)
T ss_dssp             HHHHHHHHHHHHHTHHHHTTCEEEESSC-GGGEEEHHHHHHHHHH
T ss_pred             ccchhhHHHHHHhccccccCcccccccc-ccccccHHHHHHHHHH
Confidence            9999999999987653 46788998552 2377899999998864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.2e-27  Score=205.23  Aligned_cols=205  Identities=16%  Similarity=0.170  Sum_probs=144.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHh-----
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      ++||++|||||+++||++++++|+++|++|++.+|+.+++++...+      ...++..+.+|++| ++++.+.+     
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC-HHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999998776654321      23468999999999 65555544     


Q ss_pred             --cCCCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCc
Q 022216          133 --GDDSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                        +. +|++|||||....          ++|+..+++|+.+++.+++++.    +.+.++|+++||.+.+.   +.    
T Consensus        81 ~~G~-iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~---~~----  152 (274)
T d1xhla_          81 KFGK-IDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ---AH----  152 (274)
T ss_dssp             HHSC-CCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS---CC----
T ss_pred             HcCC-ceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc---cC----
Confidence              45 9999999996421          2366778999999999998873    34456788888765321   11    


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee------------eccccc-cccCCCC
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII------------METEDT-LYEGTIS  256 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~------------~~~~~~-~~~~~v~  256 (301)
                           ..+..|..+|.+.+.+.+       .+||+++.|.||++.|++......            ...... +...+..
T Consensus       153 -----~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPlgR~g~  227 (274)
T d1xhla_         153 -----SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGK  227 (274)
T ss_dssp             -----TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBC
T ss_pred             -----CCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCCCCCcC
Confidence                 124567888888776543       479999999999999985322110            000111 2233568


Q ss_pred             HHHHHHHHHHHhcC-CC---CCCcEEEeecC
Q 022216          257 RDQVAEVAVEALLH-PE---SSYKVVEIISR  283 (301)
Q Consensus       257 ~~Dva~~~~~~l~~-~~---~~~~~~~v~~~  283 (301)
                      ++|+|++++ +|.+ +.   ..|+++.+.++
T Consensus       228 pediA~~v~-fL~S~d~s~~itG~~i~vDGG  257 (274)
T d1xhla_         228 PEEIANIIV-FLADRNLSSYIIGQSIVADGG  257 (274)
T ss_dssp             HHHHHHHHH-HHHCHHHHTTCCSCEEEESTT
T ss_pred             HHHHHHHHH-HHcCCccccCccCcEEEeCcC
Confidence            999999995 4544 33   34556666553

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.94  E-value=3e-27  Score=202.86  Aligned_cols=206  Identities=12%  Similarity=0.103  Sum_probs=148.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-------hcCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~~  135 (301)
                      +++||++|||||+++||++++++|+++|++|++++|++++++++..+...++..+.+|++| .+++.+.       ++. 
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~-   79 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRS-LEDQKQAASRCVARFGK-   79 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEeccccc-HHHHHHHHHHHHHHhCC-
Confidence            4689999999999999999999999999999999999888877665556789999999999 6555544       345 


Q ss_pred             CCEEEEccCCCCC---------C----CCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcch
Q 022216          136 SEAVVCATGFQPG---------W----DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~---------~----~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                      +|++|||||....         +    +|+..+++|+.|++++++++    ++.+ +++|+++|...+-   +.+     
T Consensus        80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~---~~~-----  150 (276)
T d1bdba_          80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFY---PNG-----  150 (276)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTS---TTS-----
T ss_pred             cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhcc---CCC-----
Confidence            9999999996431         1    25667899999999998887    3444 6899999876331   111     


Q ss_pred             hhcchhhHHHHHHHHHHHHHH------HcCCcEEEEecCcccCCCCCCceee-------c-------cccccccCCCCHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR------KSGINYTIIRPGGLRNEPPTGNIIM-------E-------TEDTLYEGTISRD  258 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~------~~~i~~~~irpg~v~~~~~~~~~~~-------~-------~~~~~~~~~v~~~  258 (301)
                          ....|..+|.+.+.+.+      ..+|+++.|.||.+.|++.......       .       ....+...+..++
T Consensus       151 ----~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~pe  226 (276)
T d1bdba_         151 ----GGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVE  226 (276)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSSCCCGG
T ss_pred             ----CCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCCCcCHH
Confidence                23567778877765543      1359999999999999864332110       0       0011122355899


Q ss_pred             HHHHHHHHHhcCCC---CCCcEEEeecC
Q 022216          259 QVAEVAVEALLHPE---SSYKVVEIISR  283 (301)
Q Consensus       259 Dva~~~~~~l~~~~---~~~~~~~v~~~  283 (301)
                      |+|++++.++..+.   ..|+++.|.++
T Consensus       227 eva~~v~fL~S~~~a~~itG~~i~VDGG  254 (276)
T d1bdba_         227 EYTGAYVFFATRGDAAPATGALLNYDGG  254 (276)
T ss_dssp             GGSHHHHHHHCHHHHTTCSSCEEEESSS
T ss_pred             HHHHHHHHHcCCcccCCeeCcEEEECcC
Confidence            99999965553233   45667776553

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-26  Score=195.92  Aligned_cols=206  Identities=15%  Similarity=0.161  Sum_probs=146.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHH------
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEA------  131 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~------  131 (301)
                      ++++|++|||||+++||+++|++|+++|++|++.+|++++++++..+     ...++.++++|++| ++++.+.      
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~v~~~~~   85 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRS   85 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC-HHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999998776654322     23578899999999 6555544      


Q ss_pred             -hcCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcC--CCEEEEecccccccccCCCCCCc
Q 022216          132 -IGDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRG--VNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       132 -~~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~--~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                       +++ +|++|||||....        ++|+..+++|+.+.+++.+++    ++.+  .++||++||.+.+...       
T Consensus        86 ~~g~-iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~-------  157 (257)
T d1xg5a_          86 QHSG-VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL-------  157 (257)
T ss_dssp             HHCC-CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-------
T ss_pred             hcCC-CCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC-------
Confidence             445 9999999997542        346667899999999988876    3333  4799999998743211       


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCc----eeeccccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGN----IIMETEDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~----~~~~~~~~~~~~~v~~~Dva~~  263 (301)
                         +......|..+|.+.+.+.+         .++|+++.|.||.+.+++....    ............+..++|+|++
T Consensus       158 ---p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~  234 (257)
T d1xg5a_         158 ---PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEA  234 (257)
T ss_dssp             ---SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBCHHHHHHH
T ss_pred             ---CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcCCCCCCcCHHHHHHH
Confidence               11224567888887765432         3689999999999988742211    0011111222357899999999


Q ss_pred             HHHHhcCCCCCCcEEEee
Q 022216          264 AVEALLHPESSYKVVEII  281 (301)
Q Consensus       264 ~~~~l~~~~~~~~~~~v~  281 (301)
                      ++.++.. ...+.+.++.
T Consensus       235 v~fL~s~-~a~~itG~i~  251 (257)
T d1xg5a_         235 VIYVLST-PAHIQIGDIQ  251 (257)
T ss_dssp             HHHHHHS-CTTEEEEEEE
T ss_pred             HHHHhCC-hhcCeECCEE
Confidence            9755544 4567777653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=3e-27  Score=202.48  Aligned_cols=207  Identities=16%  Similarity=0.175  Sum_probs=142.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      ++++|++|||||+++||++++++|+++|++|++.+|+.+++++...+      ...++..+.+|++| ++++.+.+..  
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~   80 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTL   80 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC-HHHHHHHHHHHH
Confidence            46799999999999999999999999999999999998776654321      23468999999999 6655554432  


Q ss_pred             ----CCCEEEEccCCCCCC------------CCCCceeeehHHHHHHHHHHHHc---CCCEEEEeccc-ccccccCCCCC
Q 022216          135 ----DSEAVVCATGFQPGW------------DLFAPWKVDNFGTVNLVEACRKR---GVNRFILISSI-LVNGAAMGQIL  194 (301)
Q Consensus       135 ----~~d~Vi~~Ag~~~~~------------~~~~~~~~N~~g~~~l~~a~~~~---~~~~iV~~SS~-~~~~~~~~~~~  194 (301)
                          ++|++|||||.....            +|...+++|+.+++++++++.+.   +.+++|+++|. +..   .+.  
T Consensus        81 ~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~---~~~--  155 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP---QAQ--  155 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS---SCC--
T ss_pred             HHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc---cCC--
Confidence                499999999975321            25566789999999999987321   22456666553 311   111  


Q ss_pred             CcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee------------ecccc-ccccCC
Q 022216          195 NPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII------------METED-TLYEGT  254 (301)
Q Consensus       195 ~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~------------~~~~~-~~~~~~  254 (301)
                             .....|..+|.+.+.+.+       .+||+++.|.||++.|++......            ..... .+...+
T Consensus       156 -------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~  228 (272)
T d1xkqa_         156 -------PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAA  228 (272)
T ss_dssp             -------CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSC
T ss_pred             -------CCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCCCCC
Confidence                   124667888888876543       479999999999999985322110            00111 112345


Q ss_pred             CCHHHHHHHHHHHhcCCC----CCCcEEEeecC
Q 022216          255 ISRDQVAEVAVEALLHPE----SSYKVVEIISR  283 (301)
Q Consensus       255 v~~~Dva~~~~~~l~~~~----~~~~~~~v~~~  283 (301)
                      ..++|+|++++ +|.++.    ..|+++.+.++
T Consensus       229 g~pediA~~v~-fL~S~~as~~iTG~~i~vDGG  260 (272)
T d1xkqa_         229 GKPEHIANIIL-FLADRNLSFYILGQSIVADGG  260 (272)
T ss_dssp             BCHHHHHHHHH-HHHCHHHHTTCCSCEEEESTT
T ss_pred             cCHHHHHHHHH-HHhCcchhCCccCeEEEeCcC
Confidence            68999999995 454432    34666666553

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.93  E-value=3.8e-26  Score=202.56  Aligned_cols=235  Identities=16%  Similarity=0.081  Sum_probs=168.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhcC-CCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi  140 (301)
                      +++|+||||||+||||+++++.|+++|++|++++|+..+...+..  ....+++++.+|++| .+.+.+++.. ++|+|+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d-~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD-QNKLLESIREFQPEIVF   84 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC-HHHHHHHHHHHCCSEEE
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccC-hHhhhhhhhhchhhhhh
Confidence            578999999999999999999999999999999998765443221  134689999999999 8888888875 589999


Q ss_pred             EccCCCCC----CCCCCceeeehHHHHHHHHHHHHcCC-CEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHH
Q 022216          141 CATGFQPG----WDLFAPWKVDNFGTVNLVEACRKRGV-NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAE  215 (301)
Q Consensus       141 ~~Ag~~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e  215 (301)
                      |+|+....    .++...+++|+.|+.++++++++.+. ..+++.|+...|.........+...+..+...|+.+|...|
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~~e  164 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAE  164 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHH
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCccccccccch
Confidence            99986543    34566789999999999999988764 45555555555544333322333334566778889999888


Q ss_pred             HHHH-------------HcCCcEEEEecCcccCCCCCCc--e-------------eeccccccccCCCCHHHHHHHHHHH
Q 022216          216 QYIR-------------KSGINYTIIRPGGLRNEPPTGN--I-------------IMETEDTLYEGTISRDQVAEVAVEA  267 (301)
Q Consensus       216 ~~~~-------------~~~i~~~~irpg~v~~~~~~~~--~-------------~~~~~~~~~~~~v~~~Dva~~~~~~  267 (301)
                      ..+.             ..++.++++||+.++||.....  +             ...........+++++|++.++..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a~~~~  244 (356)
T d1rkxa_         165 LVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLL  244 (356)
T ss_dssp             HHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHH
T ss_pred             hhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceEEeeccccccccccccccchhhhh
Confidence            6543             3578999999999999864321  1             1122233334688999999999888


Q ss_pred             hcCCCCC----CcEEEeecCCCCCCcCHHHHHHHhhc
Q 022216          268 LLHPESS----YKVVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       268 l~~~~~~----~~~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      +..+...    ....+.. .......++.++++.+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~  280 (356)
T d1rkxa_         245 AQKLYTDGAEYAEGWNFG-PNDADATPVKNIVEQMVK  280 (356)
T ss_dssp             HHHHHHTCGGGCSEEECC-CCGGGCEEHHHHHHHHHH
T ss_pred             hhhhcccccccccccccc-cccccccccchhhhhhHH
Confidence            7654322    2222222 222377899999888764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.93  E-value=5.5e-26  Score=197.24  Aligned_cols=216  Identities=17%  Similarity=0.216  Sum_probs=165.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh-----ccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-----TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .++||||||||+||++++++|+++|++|+++.|+......     .......+++++.+|++| .+.+.+.+.+ .++++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d-~~~~~~~~~~-~~~~~   80 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD-HQRLVDALKQ-VDVVI   80 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSC-HHHHHHHHTT-CSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeeccc-chhhhhhccC-cchhh
Confidence            5679999999999999999999999999999997653211     111134679999999999 8999999999 99999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (301)
                      ++++...       ...|..++.++++++++.+..++|+.||.+++......       +..+...|...|..++++.+.
T Consensus        81 ~~~~~~~-------~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  146 (312)
T d1qyda_          81 SALAGGV-------LSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEH-------ALQPGSITFIDKRKVRRAIEA  146 (312)
T ss_dssp             ECCCCSS-------SSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCCC-------CCSSTTHHHHHHHHHHHHHHH
T ss_pred             hhhhhcc-------cccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCccc-------ccchhhhhhHHHHHHHHhhcc
Confidence            9986432       34577888999999999887788888887655433222       123356678889999999988


Q ss_pred             cCCcEEEEecCcccCCCCC-------------CceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEE-eecCCCC
Q 022216          221 SGINYTIIRPGGLRNEPPT-------------GNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVE-IISRVDA  286 (301)
Q Consensus       221 ~~i~~~~irpg~v~~~~~~-------------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~-v~~~~~~  286 (301)
                      .+++++++||+.++|+...             +.+...........+++++|+|++++.++.++...+++++ +.+   +
T Consensus       147 ~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~---~  223 (312)
T d1qyda_         147 ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPP---M  223 (312)
T ss_dssp             TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCG---G
T ss_pred             cccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhcCccccCceEEEeCC---C
Confidence            9999999999999875221             1122223334445689999999999999998877666654 444   3


Q ss_pred             CCcCHHHHHHHhhc
Q 022216          287 PKRSYEDLFGSIKQ  300 (301)
Q Consensus       287 ~~~s~~e~~~~i~~  300 (301)
                      +.+|++|+++.+++
T Consensus       224 ~~~s~~e~~~~~~~  237 (312)
T d1qyda_         224 NILSQKEVIQIWER  237 (312)
T ss_dssp             GEEEHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHH
Confidence            78999999998875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.4e-27  Score=197.75  Aligned_cols=204  Identities=16%  Similarity=0.130  Sum_probs=149.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHH---HhcCCCCEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSE---AIGDDSEAV  139 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~~~~~d~V  139 (301)
                      ++++|++|||||+++||+++++.|+++|++|++.+|+++++++..  ...++....+|+.+ .+.++.   .+.. +|++
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~--~~~~~~~~~~d~~~-~~~~~~~~~~~~~-id~l   78 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE--KYPGIQTRVLDVTK-KKQIDQFANEVER-LDVL   78 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG--GSTTEEEEECCTTC-HHHHHHHHHHCSC-CSEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH--hccCCceeeeeccc-ccccccccccccc-ceeE
Confidence            368999999999999999999999999999999999988877765  34578888899987 544444   4445 9999


Q ss_pred             EEccCCCCC--------CCCCCceeeehHHHHHHHHHHH----HcCCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          140 VCATGFQPG--------WDLFAPWKVDNFGTVNLVEACR----KRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       140 i~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      |||||....        ++|...+++|+.+++.+++++.    +.+.++||++||...  ..         .+...+..|
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~--~~---------~~~~~~~~Y  147 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVAS--SV---------KGVVNRCVY  147 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBT--TT---------BCCTTBHHH
T ss_pred             EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhh--cc---------CCccchhHH
Confidence            999997653        3466778999999999988873    345579999998752  11         112335778


Q ss_pred             HHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeec----------cccccccCCCCHHHHHHHHHHHhcC
Q 022216          208 LIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIME----------TEDTLYEGTISRDQVAEVAVEALLH  270 (301)
Q Consensus       208 ~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~----------~~~~~~~~~v~~~Dva~~~~~~l~~  270 (301)
                      ..+|.+.+.+.+       .+||+++.|.||.+.|++........          ....+...+..++|+|+++. +|.+
T Consensus       148 ~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedva~~v~-fL~s  226 (245)
T d2ag5a1         148 STTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCV-YLAS  226 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHH-HHHS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHH-HHhC
Confidence            999999887654       46999999999999987533211100          01112234668999999995 5555


Q ss_pred             CCC---CCcEEEeec
Q 022216          271 PES---SYKVVEIIS  282 (301)
Q Consensus       271 ~~~---~~~~~~v~~  282 (301)
                      +.+   .|+++.|.+
T Consensus       227 ~~s~~iTG~~i~VDG  241 (245)
T d2ag5a1         227 DESAYVTGNPVIIDG  241 (245)
T ss_dssp             GGGTTCCSCEEEECT
T ss_pred             hhhCCCcCceEEeCC
Confidence            554   455555554

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.5e-26  Score=196.63  Aligned_cols=206  Identities=20%  Similarity=0.262  Sum_probs=139.4

Q ss_pred             hcccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCchhhhcc--ccCCCCeEEEEccCCCChHhHHHHh-----
Q 022216           62 VSVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL--SKDNPSLQIVKADVTEGSAKLSEAI-----  132 (301)
Q Consensus        62 ~~~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~-----  132 (301)
                      +++++|++|||||+|  |||++++++|+++|++|++.+|+....++..  .....+..++++|++| ++++++.+     
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~   82 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQ-DEELDALFAGVKE   82 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCC-HHHHHHHHHHHHH
Confidence            467899999999987  8999999999999999998888754332211  1133567889999999 65555544     


Q ss_pred             --cCCCCEEEEccCCCCC------------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCc
Q 022216          133 --GDDSEAVVCATGFQPG------------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       133 --~~~~d~Vi~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                        ++ +|++|||||..+.            ++|...+++|+.+++.+++++...  ..++||++||......        
T Consensus        83 ~~g~-iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~--------  153 (256)
T d1ulua_          83 AFGG-LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV--------  153 (256)
T ss_dssp             HHSS-EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB--------
T ss_pred             hcCC-ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCC--------
Confidence              45 9999999987431            234557889999999999988533  1268999999864321        


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHH
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEV  263 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~  263 (301)
                          ...+..|..+|.+.+.+.+       .+||+++.|.||.+.+++.........      ...+...+..++|+|++
T Consensus       154 ----~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~  229 (256)
T d1ulua_         154 ----VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNL  229 (256)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTTSSCCCHHHHHHH
T ss_pred             ----CCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence                1224678888888876553       479999999999999886543321110      01122346789999999


Q ss_pred             HHHHhcCCCCCC---cEEEeec
Q 022216          264 AVEALLHPESSY---KVVEIIS  282 (301)
Q Consensus       264 ~~~~l~~~~~~~---~~~~v~~  282 (301)
                      ++ +|.++.+.+   +++.+.+
T Consensus       230 v~-fL~S~~s~~itG~~i~VDG  250 (256)
T d1ulua_         230 GL-FLLSPLASGITGEVVYVDA  250 (256)
T ss_dssp             HH-HHHSGGGTTCCSCEEEEST
T ss_pred             HH-HHhCchhCCccCCeEEECc
Confidence            84 555665544   4444443

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.93  E-value=1.6e-26  Score=195.79  Aligned_cols=199  Identities=16%  Similarity=0.109  Sum_probs=140.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCCh------HhHHHHhcCCCCEEEE
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS------AKLSEAIGDDSEAVVC  141 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~d~Vi~  141 (301)
                      ++|||||+++||++++++|+++|++|++.+|+.+.++++..   ....+..+|++|+.      +.+.+.+++ +|++||
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~---~~~~~~~~dv~~~~~~~~~~~~~~~~~G~-iDiLVn   77 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA---FAETYPQLKPMSEQEPAELIEAVTSAYGQ-VDVLVS   77 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH---HHHHCTTSEECCCCSHHHHHHHHHHHHSC-CCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh---hhCcEEEeccCCHHHHHHHHHHHHHHcCC-CCEEEE
Confidence            79999999999999999999999999999998777665432   12233467888731      334455566 999999


Q ss_pred             ccCCCCC---------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHH
Q 022216          142 ATGFQPG---------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTL  208 (301)
Q Consensus       142 ~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~  208 (301)
                      |||....         ++|+..+++|+.+++++++++    ++.+.++||++||.+.+...            .....|.
T Consensus        78 NAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~------------~~~~~Y~  145 (252)
T d1zmta1          78 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW------------KELSTYT  145 (252)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC------------TTCHHHH
T ss_pred             CCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc------------ccccccc
Confidence            9986432         246677899999999998887    44556899999998643221            1235677


Q ss_pred             HHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------------ccccccCCCCHHHHHHHHHHHhc
Q 022216          209 IAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------------EDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       209 ~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------------~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                      .+|.+.+.+.+       .+||+++.|.||++.|++.........            .......+..++|+|++++ +|.
T Consensus       146 asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R~g~pedvA~~v~-fL~  224 (252)
T d1zmta1         146 SARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVA-FLA  224 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCHHHHHHHHH-HHH
T ss_pred             cccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHH-HHh
Confidence            88888775543       479999999999999987544321100            0111223568999999985 555


Q ss_pred             CCCCC---CcEEEeecC
Q 022216          270 HPESS---YKVVEIISR  283 (301)
Q Consensus       270 ~~~~~---~~~~~v~~~  283 (301)
                      ++.+.   |+++.+.++
T Consensus       225 S~~s~~iTG~~i~vdGG  241 (252)
T d1zmta1         225 SGSCDYLTGQVFWLAGG  241 (252)
T ss_dssp             TTSCGGGTTCEEEESTT
T ss_pred             CchhcCCcCCeEEECCC
Confidence            66544   555555543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.93  E-value=6.4e-26  Score=194.27  Aligned_cols=208  Identities=18%  Similarity=0.200  Sum_probs=146.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-hhc---cccCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      .+++||++|||||+++||++++++|+++|++|++.+|+.++. ++.   .......+.++.+|++| ++++.+.+..   
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~   92 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVK   92 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCC-HHHHHHHHHHHHH
Confidence            578999999999999999999999999999999998875432 222   22356789999999999 6555554432   


Q ss_pred             ---CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhc
Q 022216          135 ---DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFL  201 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~  201 (301)
                         ++|++|||+|....        ++|...+++|+.+++++++++.+.  .-+++++++|....  ...         .
T Consensus        93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~--~~~---------~  161 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ--AKA---------V  161 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT--CSS---------C
T ss_pred             HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccc--ccc---------c
Confidence               49999999986543        245667899999999999999643  23688888876521  111         1


Q ss_pred             chhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee---------e--------ccccccccCCCCH
Q 022216          202 NVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII---------M--------ETEDTLYEGTISR  257 (301)
Q Consensus       202 ~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~---------~--------~~~~~~~~~~v~~  257 (301)
                      .....|..+|.+.+.+.+       .+||++|.|.||++.|++......         .        .........+..+
T Consensus       162 ~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p  241 (272)
T d1g0oa_         162 PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLP  241 (272)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBCH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCCCCCcCH
Confidence            224567888888876553       479999999999999874211100         0        0001122346799


Q ss_pred             HHHHHHHHHHhcCCCC---CCcEEEeec
Q 022216          258 DQVAEVAVEALLHPES---SYKVVEIIS  282 (301)
Q Consensus       258 ~Dva~~~~~~l~~~~~---~~~~~~v~~  282 (301)
                      +|+|++++ +|.++.+   .|+++.+.+
T Consensus       242 eevA~~v~-fL~s~~s~~itG~~i~vDG  268 (272)
T d1g0oa_         242 IDIARVVC-FLASNDGGWVTGKVIGIDG  268 (272)
T ss_dssp             HHHHHHHH-HHHSGGGTTCCSCEEEEST
T ss_pred             HHHHHHHH-HHhCchhcCccCceEeECC
Confidence            99999995 5555554   445555544

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.93  E-value=1.6e-26  Score=196.58  Aligned_cols=207  Identities=20%  Similarity=0.220  Sum_probs=143.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-hh---ccccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KT---TLSKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++||+||||||+++||+++++.|+++|++|++..|+.++. ++   .......++.++.+|++| .+++.+.+..    
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCC-HHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999877665442 22   222356789999999999 6666554432    


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcc
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLN  202 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~  202 (301)
                        ++|++|||||....        ++|+..+++|+.+.+++++++.+.  .-+++++++|...  ...+.         .
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~--~~~~~---------~  150 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAA--VMTGI---------P  150 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGG--TCCSC---------C
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccc--cccCC---------C
Confidence              49999999997543        245577899999999999998543  2246777776542  11111         1


Q ss_pred             hhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCce---------eec--------cccccccCCCCHH
Q 022216          203 VFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNI---------IME--------TEDTLYEGTISRD  258 (301)
Q Consensus       203 ~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~---------~~~--------~~~~~~~~~v~~~  258 (301)
                      .+..|..+|.+.+.+.+       ..||+++.|.||++.|++.....         ...        ........+..++
T Consensus       151 ~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~  230 (259)
T d1ja9a_         151 NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPA  230 (259)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCCCCcCHH
Confidence            24667888888876553       46999999999999987421110         000        0111223467899


Q ss_pred             HHHHHHHHHhcCCCCC---CcEEEeec
Q 022216          259 QVAEVAVEALLHPESS---YKVVEIIS  282 (301)
Q Consensus       259 Dva~~~~~~l~~~~~~---~~~~~v~~  282 (301)
                      |+|++++ +|.++.+.   |+++.+.+
T Consensus       231 eVa~~v~-fL~S~~a~~itG~~i~vDG  256 (259)
T d1ja9a_         231 DIGRAVS-ALCQEESEWINGQVIKLTG  256 (259)
T ss_dssp             HHHHHHH-HHHSGGGTTCCSCEEEEST
T ss_pred             HHHHHHH-HHhCchhcCCcCceEEeCC
Confidence            9999995 56666544   44555544

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.8e-26  Score=200.04  Aligned_cols=217  Identities=16%  Similarity=0.084  Sum_probs=149.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh---------hhccccCCCCeEEEEccCCCChHhHH---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA---------KTTLSKDNPSLQIVKADVTEGSAKLS---  129 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~---------~~~~~~~~~~~~~~~~Dl~~~~~~~~---  129 (301)
                      ++++||++|||||++|||++++++|+++|++|++.+|+.+..         ++...+.......+.+|++| .+.++   
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v   81 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS-VEAGEKLV   81 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC-GGGHHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch-HHHHHHHH
Confidence            567899999999999999999999999999999987765422         22221122344566788888 44333   


Q ss_pred             ----HHhcCCCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCC
Q 022216          130 ----EAIGDDSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQI  193 (301)
Q Consensus       130 ----~~~~~~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~  193 (301)
                          +.+++ +|++|||||+...        ++|+..+++|+.|++++++++    ++.+.++||++||.+.+-..    
T Consensus        82 ~~~~~~~G~-iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~----  156 (302)
T d1gz6a_          82 KTALDTFGR-IDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN----  156 (302)
T ss_dssp             HHHHHHTSC-CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----
T ss_pred             HHHHHHcCC-CCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCC----
Confidence                33445 9999999997543        356778899999999999987    45566899999998743211    


Q ss_pred             CCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHH
Q 022216          194 LNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       194 ~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                              .....|..+|.+.+.+.+       .+||+++.|.||.+.+......      .......+.++|+|++++ 
T Consensus       157 --------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~------~~~~~~~~~PedvA~~v~-  221 (302)
T d1gz6a_         157 --------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVM------PEDLVEALKPEYVAPLVL-  221 (302)
T ss_dssp             --------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGS------CHHHHHHSCGGGTHHHHH-
T ss_pred             --------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcC------cHhhHhcCCHHHHHHHHH-
Confidence                    124678888888876543       4799999999998866542211      111223578999999995 


Q ss_pred             HhcCCC--CCCcEEEeecCC----------------CCCCcCHHHHHHHhh
Q 022216          267 ALLHPE--SSYKVVEIISRV----------------DAPKRSYEDLFGSIK  299 (301)
Q Consensus       267 ~l~~~~--~~~~~~~v~~~~----------------~~~~~s~~e~~~~i~  299 (301)
                      +|+++.  ..|+++.+.++-                ...+.+.+++.+.+.
T Consensus       222 fL~S~~a~itG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~t~e~i~~~~~  272 (302)
T d1gz6a_         222 WLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWV  272 (302)
T ss_dssp             HHTSTTCCCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHHHHHHTHH
T ss_pred             HHcCCCcCCCCcEEEeCCCceeEEEEeecCcccccCCCCCCCHHHHHHHHH
Confidence            455543  345555544321                124567777776554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.92  E-value=1.3e-25  Score=192.40  Aligned_cols=207  Identities=18%  Similarity=0.189  Sum_probs=164.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+|||||||||||++++++|.++|++|++++|+.                  .|++| .+.+.+.+.+ ++|+|||+|+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------~D~~d-~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------LDITN-VLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------CCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------ccCCC-HHHHHHHHHHcCCCEEEeeccc
Confidence            6799999999999999999999999999987742                  58999 8888888875 58999999986


Q ss_pred             CCC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          146 QPG----WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       146 ~~~----~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ...    ......+..|+..+.++.+.++..+ ..+++.||..+|+.....+..+.. +..+...|+.+|...|+++++.
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~ss~~v~~~~~~~~~~e~~-~~~~~~~~~~~k~~~e~~~~~~  140 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG-AEIVQISTDYVFDGEAKEPITEFD-EVNPQSAYGKTKLEGENFVKAL  140 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT-CEEEEEEEGGGSCSCCSSCBCTTS-CCCCCSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhccccccccccccccccccc-ccccccccceeeeccccccccccc-cccchhhhhhhhhHHHHHHHHh
Confidence            542    2334456788888888888888776 588889999988877665544433 3456778999999999999999


Q ss_pred             CCcEEEEecCcccCCCCCCc-----------eeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCcC
Q 022216          222 GINYTIIRPGGLRNEPPTGN-----------IIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKRS  290 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~-----------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~s  290 (301)
                      +.+++++||++++|+.....           ..... ......+++++|+++++..+++.+.  ..+||+.++   +.+|
T Consensus       141 ~~~~~i~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~~~~~~~~~~~~~--~g~~~~~~~---~~~s  214 (281)
T d1vl0a_         141 NPKYYIVRTAWLYGDGNNFVKTMINLGKTHDELKVV-HDQVGTPTSTVDLARVVLKVIDEKN--YGTFHCTCK---GICS  214 (281)
T ss_dssp             CSSEEEEEECSEESSSSCHHHHHHHHHHHCSEEEEE-SSCEECCEEHHHHHHHHHHHHHHTC--CEEEECCCB---SCEE
T ss_pred             CCCccccceeEEeCCCcccccchhhhhccCCceeec-CCceeccchhhhhhhhhhhhhhhcc--cCceeEeCC---Cccc
Confidence            99999999999999853321           11111 2234578999999999999998764  458999886   8999


Q ss_pred             HHHHHHHhhc
Q 022216          291 YEDLFGSIKQ  300 (301)
Q Consensus       291 ~~e~~~~i~~  300 (301)
                      +.|+++.+.+
T Consensus       215 ~~e~~~~i~~  224 (281)
T d1vl0a_         215 WYDFAVEIFR  224 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999998875

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.5e-25  Score=185.90  Aligned_cols=204  Identities=17%  Similarity=0.097  Sum_probs=147.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-------hcCC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-------IGDD  135 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~~  135 (301)
                      +++||++|||||+++||++++++|+++|++|++++|+.+++++...+..........|+.+ .+.+.+.       +.. 
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-   79 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-EKDVQTALALAKGKFGR-   79 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSC-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCcccccccccc-ccccccccccccccccc-
Confidence            5789999999999999999999999999999999999988877666566788999999998 5444333       334 


Q ss_pred             CCEEEEccCCCCC--------------CCCCCceeeehHHHHHHHHHHHHc----------CCCEEEEecccccccccCC
Q 022216          136 SEAVVCATGFQPG--------------WDLFAPWKVDNFGTVNLVEACRKR----------GVNRFILISSILVNGAAMG  191 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~--------------~~~~~~~~~N~~g~~~l~~a~~~~----------~~~~iV~~SS~~~~~~~~~  191 (301)
                      .|.++++++....              ++|..++++|+.+++++.+++.+.          +.++||++||...+..   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~---  156 (248)
T d2o23a1          80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG---  156 (248)
T ss_dssp             CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC---
T ss_pred             ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC---
Confidence            8999998765321              245567899999999999998432          3358999999874321   


Q ss_pred             CCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc---ccc--cccCCCCHHH
Q 022216          192 QILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET---EDT--LYEGTISRDQ  259 (301)
Q Consensus       192 ~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~---~~~--~~~~~v~~~D  259 (301)
                               ...+..|..+|.+.+.+.+       .+||+++.|.||.+.|++.........   ...  ....+..++|
T Consensus       157 ---------~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~~R~g~pee  227 (248)
T d2o23a1         157 ---------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAE  227 (248)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCSSSCSCBCHHH
T ss_pred             ---------CCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCHHHHHHHHhcCCCCCCCcCHHH
Confidence                     2235678899998886654       479999999999999987543221111   011  1133668999


Q ss_pred             HHHHHHHHhcCCCCCCcEEEe
Q 022216          260 VAEVAVEALLHPESSYKVVEI  280 (301)
Q Consensus       260 va~~~~~~l~~~~~~~~~~~v  280 (301)
                      +|++++.++.++-..|++.+|
T Consensus       228 vA~~v~fL~s~~~itGq~I~v  248 (248)
T d2o23a1         228 YAHLVQAIIENPFLNGEVIRL  248 (248)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEE
T ss_pred             HHHHHHHHHhCCCCCceEeEC
Confidence            999997666544445555543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=192.66  Aligned_cols=207  Identities=15%  Similarity=0.162  Sum_probs=142.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcC---
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGD---  134 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~---  134 (301)
                      ++++||++|||||+|+||+++|++|+++|++|++++|+.+++++...    ..+..+.++.+|++| .+++.+.+..   
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~   99 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIK   99 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC-hHHHHHHhhhhhh
Confidence            57899999999999999999999999999999999999876554332    245778899999999 7666554422   


Q ss_pred             ---CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHH-----HcCCCEEEEecccccccccCCCCCCcch
Q 022216          135 ---DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACR-----KRGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 ---~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~-----~~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                         ++|++|||||.....        ++...+.+|..+...+.....     ..+.+.+++++|......          
T Consensus       100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~----------  169 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG----------  169 (294)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC----------
T ss_pred             hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhc----------
Confidence               499999999975532        344556788888777766542     223456777777653211          


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------ccccccCCCCHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDTLYEGTISRDQVAEVA  264 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~~~~~~v~~~Dva~~~  264 (301)
                        ......|..+|.+.+.+.+       ..||+++.|.||.+.|++.........       .......+..++|+|+++
T Consensus       170 --~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v  247 (294)
T d1w6ua_         170 --SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLA  247 (294)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHH
T ss_pred             --ccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence              1124568888888876553       478999999999999986543321111       111223467899999999


Q ss_pred             HHHhcCCCC---CCcEEEeec
Q 022216          265 VEALLHPES---SYKVVEIIS  282 (301)
Q Consensus       265 ~~~l~~~~~---~~~~~~v~~  282 (301)
                      . +|.++.+   .|+++.+.+
T Consensus       248 ~-fL~sd~s~~itG~~i~vDG  267 (294)
T d1w6ua_         248 A-FLCSDYASWINGAVIKFDG  267 (294)
T ss_dssp             H-HHTSGGGTTCCSCEEEEST
T ss_pred             H-HHhCchhcCCCCcEEEECC
Confidence            5 5555544   455555554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=1.5e-24  Score=183.43  Aligned_cols=199  Identities=16%  Similarity=0.122  Sum_probs=136.9

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhc-------C
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIG-------D  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~  134 (301)
                      |++|+||||||++|||++++++|+++|+  +|++..|+.++++++......++.++.+|++| .+++.+.+.       .
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~~   79 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGG
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCC-HHHHHHHHHHHHHHhCC
Confidence            4579999999999999999999999996  68888999988887765566789999999999 766655442       2


Q ss_pred             -CCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----Hc-----------CCCEEEEeccccccccc
Q 022216          135 -DSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KR-----------GVNRFILISSILVNGAA  189 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~-----------~~~~iV~~SS~~~~~~~  189 (301)
                       ++|+||||||+...         ++|+..+++|+.|++++++++.    +.           ..++++++|+...+-..
T Consensus        80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~  159 (250)
T d1yo6a1          80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD  159 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred             CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccC
Confidence             49999999996432         1355678999999999988862    21           12578888887543211


Q ss_pred             CCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHH
Q 022216          190 MGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAE  262 (301)
Q Consensus       190 ~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~  262 (301)
                      ..     ......+...|..||.+...+.+       ..||+++.|.||++.|++....           ..+++++.++
T Consensus       160 ~~-----~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~~-----------~~~~~e~~a~  223 (250)
T d1yo6a1         160 NT-----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKN-----------AALTVEQSTA  223 (250)
T ss_dssp             CC-----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------HHHHH
T ss_pred             Cc-----ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCCC-----------CCCCHHHHHH
Confidence            11     00111234568899998876543       4789999999999999874321           3467899998


Q ss_pred             HHHHHhcCCC--CCCcEEE
Q 022216          263 VAVEALLHPE--SSYKVVE  279 (301)
Q Consensus       263 ~~~~~l~~~~--~~~~~~~  279 (301)
                      .++..+..+.  ..|+.|+
T Consensus       224 ~~~~~~~~~~~~~sG~f~~  242 (250)
T d1yo6a1         224 ELISSFNKLDNSHNGRFFM  242 (250)
T ss_dssp             HHHHHHTTCCGGGTTCEEE
T ss_pred             HHHHHHhcCCCCCCeEEEC
Confidence            8888886543  3454443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=7.3e-25  Score=180.69  Aligned_cols=182  Identities=19%  Similarity=0.198  Sum_probs=131.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .|+||||||||+||++++++|+++|+  +|+++.|++..       ....+   ..++.| ..++.+.+...+|+||||+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~~~~~---~~~~~d-~~~~~~~~~~~~d~vi~~~   70 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRL---DNPVGP-LAELLPQLDGSIDTAFCCL   70 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTE---ECCBSC-HHHHGGGCCSCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------hcccc---cccccc-hhhhhhccccchheeeeee
Confidence            48999999999999999999999997  66666665432       11223   334444 3333333333499999999


Q ss_pred             CCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          144 GFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       144 g~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      |...  ..+...+.++|+.++.+++++|++.+++++|++||..+++..              .+.|..+|..+|+.+++.
T Consensus        71 g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~~--------------~~~y~~~K~~~E~~l~~~  136 (212)
T d2a35a1          71 GTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKS--------------SIFYNRVKGELEQALQEQ  136 (212)
T ss_dssp             CCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTC--------------SSHHHHHHHHHHHHHTTS
T ss_pred             eeeccccccccccccchhhhhhhccccccccccccccccccccccccc--------------ccchhHHHHHHhhhcccc
Confidence            8653  223345678999999999999999999999999998765321              356889999999999888


Q ss_pred             CC-cEEEEecCcccCCCCCCceeecccc---ccc---cCCCCHHHHHHHHHHHhcCCC
Q 022216          222 GI-NYTIIRPGGLRNEPPTGNIIMETED---TLY---EGTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       222 ~i-~~~~irpg~v~~~~~~~~~~~~~~~---~~~---~~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ++ +++++||+.++|+............   ...   ..+++++|+|++++.++.++.
T Consensus       137 ~~~~~~I~Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~DvA~ai~~~~~~~~  194 (212)
T d2a35a1         137 GWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEG  194 (212)
T ss_dssp             CCSEEEEEECCSEESTTSCEEGGGGTTCCCC----CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccccceeeCCcceeCCcccccHHHHHHHHHhhccCCCCcEEEHHHHHHHHHHHHcCCC
Confidence            87 5999999999998654321111000   000   124899999999999888765

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.91  E-value=1.8e-24  Score=186.49  Aligned_cols=212  Identities=17%  Similarity=0.230  Sum_probs=160.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc------cccCCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT------LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      +.|+||||||||+||++++++|+++|++|++++|+.......      ......+++++.+|+.+ ...+.+.+.+ .+.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~-~~~   79 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD-HASLVEAVKN-VDV   79 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTC-HHHHHHHHHT-CSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeeccc-chhhhhhhhh-cee
Confidence            368999999999999999999999999999999986543221      11124678999999999 8889999999 999


Q ss_pred             EEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH
Q 022216          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI  218 (301)
Q Consensus       139 Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~  218 (301)
                      |||+++..           +..++.+++++++..+++++++.||...+.....        .......+...+...+.++
T Consensus        80 vi~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  140 (307)
T d1qyca_          80 VISTVGSL-----------QIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVH--------AVEPAKSVFEVKAKVRRAI  140 (307)
T ss_dssp             EEECCCGG-----------GSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCC--------CCTTHHHHHHHHHHHHHHH
T ss_pred             eeeccccc-----------ccchhhHHHHHHHHhccccceeeecccccccccc--------ccccccccccccccccchh
Confidence            99998632           4566788999999998889999888654322111        1122344567788888888


Q ss_pred             HHcCCcEEEEecCcccCCCCCC------------ceeeccccccccCCCCHHHHHHHHHHHhcCCCCCCcEEE-eecCCC
Q 022216          219 RKSGINYTIIRPGGLRNEPPTG------------NIIMETEDTLYEGTISRDQVAEVAVEALLHPESSYKVVE-IISRVD  285 (301)
Q Consensus       219 ~~~~i~~~~irpg~v~~~~~~~------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~-v~~~~~  285 (301)
                      ++.+++++++||+.++|+....            .............+++++|+|++++.++..+...++.++ +.+   
T Consensus       141 ~~~~~~~~i~r~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~~~~---  217 (307)
T d1qyca_         141 EAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLP---  217 (307)
T ss_dssp             HHHTCCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGTTEEEECCCG---
T ss_pred             hccCCCceecccceecCCCccchhhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcChhhcCceeEEeCC---
Confidence            8999999999999999863211            112222233344689999999999999988876666554 445   


Q ss_pred             CCCcCHHHHHHHhhc
Q 022216          286 APKRSYEDLFGSIKQ  300 (301)
Q Consensus       286 ~~~~s~~e~~~~i~~  300 (301)
                      ++.+|+.|+++.+.+
T Consensus       218 ~~~~s~~ei~~~~~~  232 (307)
T d1qyca_         218 ANTLSLNELVALWEK  232 (307)
T ss_dssp             GGEEEHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHH
Confidence            489999999998865

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.3e-25  Score=188.43  Aligned_cols=205  Identities=13%  Similarity=0.116  Sum_probs=147.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHH---CCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLA---KGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~---~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      .+++|+++||||++|||++++++|++   +|++|++++|+.++++++..+     ...++.++.+|++| .+++.+.+..
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~-~~~v~~l~~~   81 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-EAGVQRLLSA   81 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-HHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC-HHHHHHHHHH
Confidence            56899999999999999999999986   799999999998877654321     34578999999999 7666665421


Q ss_pred             ----------CCCEEEEccCCCCC-----------CCCCCceeeehHHHHHHHHHHHHc----C--CCEEEEeccccccc
Q 022216          135 ----------DSEAVVCATGFQPG-----------WDLFAPWKVDNFGTVNLVEACRKR----G--VNRFILISSILVNG  187 (301)
Q Consensus       135 ----------~~d~Vi~~Ag~~~~-----------~~~~~~~~~N~~g~~~l~~a~~~~----~--~~~iV~~SS~~~~~  187 (301)
                                .+|++|||||....           ++|+.++++|+.+++++++++.+.    +  .++||++||...+.
T Consensus        82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~  161 (259)
T d1oaaa_          82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence                      47899999986421           235667899999999999998543    2  25899999986432


Q ss_pred             ccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-----HcCCcEEEEecCcccCCCCCCceeeccc---------cccccC
Q 022216          188 AAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-----KSGINYTIIRPGGLRNEPPTGNIIMETE---------DTLYEG  253 (301)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-----~~~i~~~~irpg~v~~~~~~~~~~~~~~---------~~~~~~  253 (301)
                      .            ...+..|..+|.+.+.+.+     .+||+++.|.||.+.|++..........         ......
T Consensus       162 ~------------~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~r  229 (259)
T d1oaaa_         162 P------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGA  229 (259)
T ss_dssp             C------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTC
T ss_pred             C------------CccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCCCCC
Confidence            1            1224778889998886653     3799999999999999853221100000         011123


Q ss_pred             CCCHHHHHHHHHHHhcCCC-CCCcEEEe
Q 022216          254 TISRDQVAEVAVEALLHPE-SSYKVVEI  280 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~~~-~~~~~~~v  280 (301)
                      ...++|+|++++.++.+.. ..|+++++
T Consensus       230 ~~~p~evA~~i~~ll~~~s~~TG~~idv  257 (259)
T d1oaaa_         230 LVDCGTSAQKLLGLLQKDTFQSGAHVDF  257 (259)
T ss_dssp             SBCHHHHHHHHHHHHHHCCSCTTEEEET
T ss_pred             CCCHHHHHHHHHHHhhhccCCCCCeEEe
Confidence            5789999999988886443 33444443

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.91  E-value=1.8e-24  Score=186.53  Aligned_cols=212  Identities=11%  Similarity=0.103  Sum_probs=157.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~  145 (301)
                      |+||||||+||||+++++.|.+.|+.|. +.++...              +.+|++| .+.+.+.+++ ++|+|||+||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~--------------~~~Dl~~-~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKE--------------FCGDFSN-PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSS--------------SCCCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCcc--------------ccCcCCC-HHHHHHHHHHcCCCEEEEeccc
Confidence            6899999999999999999999987554 4443221              2479999 8889888876 58999999986


Q ss_pred             CC----CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHc
Q 022216          146 QP----GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKS  221 (301)
Q Consensus       146 ~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  221 (301)
                      ..    ..++...+++|+.++.++++++++.+. +++++||..+|+.....+..+.. +..|.+.|+.+|..+|+++...
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~-~~~p~~~y~~~k~~~e~~~~~~  142 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETD-ATSPLNVYGKTKLAGEKALQDN  142 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTS-CCCCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCccccccccccccccchhhhhcccc-ccccccccccccCCCCCCCcccc-ccCCCchHhhhhhhhhhhHHhh
Confidence            54    234555778999999999999998874 89999999988776666555543 3456789999999999999877


Q ss_pred             CCcEEEEecCcccCCCCCCce-----------eeccccccccCCCCHHHHHHHHHHHhc---CCCCCCcEEEeecCCCCC
Q 022216          222 GINYTIIRPGGLRNEPPTGNI-----------IMETEDTLYEGTISRDQVAEVAVEALL---HPESSYKVVEIISRVDAP  287 (301)
Q Consensus       222 ~i~~~~irpg~v~~~~~~~~~-----------~~~~~~~~~~~~v~~~Dva~~~~~~l~---~~~~~~~~~~v~~~~~~~  287 (301)
                      .....+++++..+........           ........+..+++.+|+++++..++.   .....+.+||++++   +
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~~~~~~~~~~~~n~~~~---~  219 (298)
T d1n2sa_         143 CPKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAG---G  219 (298)
T ss_dssp             CSSEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCB---S
T ss_pred             hcccccccccceeeccCCccchhhhhhhcccceeecccceeecccccchHHHHHHHHHhhhhccccccccccccCC---C
Confidence            777777777766544322211           111112233457889999988876654   23345788999885   8


Q ss_pred             CcCHHHHHHHhh
Q 022216          288 KRSYEDLFGSIK  299 (301)
Q Consensus       288 ~~s~~e~~~~i~  299 (301)
                      ..++.|+++.+.
T Consensus       220 ~~~~~~~~~~i~  231 (298)
T d1n2sa_         220 TTTWHDYAALVF  231 (298)
T ss_dssp             CEEHHHHHHHHH
T ss_pred             ceecHHHHHHHH
Confidence            899999988765

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-24  Score=186.19  Aligned_cols=194  Identities=20%  Similarity=0.260  Sum_probs=137.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEE---eCCchhhhc------cccCCCCeEEEEccCCCChHhHHHHhcC--
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGV---RDLDKAKTT------LSKDNPSLQIVKADVTEGSAKLSEAIGD--  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~---r~~~~~~~~------~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--  134 (301)
                      .|+||||||++|||++++++|+++|++|+.+.   |+.+..+++      ......++..+.+|++| .+++.+++..  
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~   80 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERVT   80 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTCT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc-hHhhhhhhhhcc
Confidence            47889999999999999999999998765554   443332221      11245689999999999 7777776643  


Q ss_pred             --CCCEEEEccCCCCC--------CCCCCceeeehHHHHHHHHHH----HHcCCCEEEEecccccccccCCCCCCcchhh
Q 022216          135 --DSEAVVCATGFQPG--------WDLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       135 --~~d~Vi~~Ag~~~~--------~~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                        .+|++|||||....        ++|+..+++|+.|++++++++    ++.+.++||++||.+..-   +.        
T Consensus        81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~---~~--------  149 (285)
T d1jtva_          81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM---GL--------  149 (285)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS---CC--------
T ss_pred             ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC---CC--------
Confidence              59999999986542        356677899999999998887    455668999999986432   11        


Q ss_pred             cchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------c---------------ccccc
Q 022216          201 LNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------E---------------DTLYE  252 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~---------------~~~~~  252 (301)
                       .....|..+|.+.+.+.+       .+||+++.|.||++.|++..+......      .               .....
T Consensus       150 -~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (285)
T d1jtva_         150 -PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFRE  228 (285)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhhhcc
Confidence             224678888988876543       479999999999999987543321100      0               00011


Q ss_pred             CCCCHHHHHHHHHHHhcCCC
Q 022216          253 GTISRDQVAEVAVEALLHPE  272 (301)
Q Consensus       253 ~~v~~~Dva~~~~~~l~~~~  272 (301)
                      ...+|+|+|++++.++..+.
T Consensus       229 ~~~~PeeVA~~v~~~~~~~~  248 (285)
T d1jtva_         229 AAQNPEEVAEVFLTALRAPK  248 (285)
T ss_dssp             HCBCHHHHHHHHHHHHHCSS
T ss_pred             cCCCHHHHHHHHHHHHhCCC
Confidence            35689999999999998764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.91  E-value=3.4e-23  Score=183.26  Aligned_cols=213  Identities=15%  Similarity=0.129  Sum_probs=157.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +.|+|+||||||+||++++++|+++|++|+++.|++++..........+++++++|++|..+.+..++++ +|+++++..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~-~~~~~~~~~   80 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEG-AHLAFINTT   80 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTT-CSEEEECCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcC-CceEEeecc
Confidence            4689999999999999999999999999999999887654322124578999999999955667888888 999988753


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHHcCCc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRKSGIN  224 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~  224 (301)
                      ..        ...|+..+.++++++++.+++++|+.||..........          ....|..+|...+++.++.+++
T Consensus        81 ~~--------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~~~~----------~~~~~~~~k~~~~~~~~~~~~~  142 (350)
T d1xgka_          81 SQ--------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPW----------PAVPMWAPKFTVENYVRQLGLP  142 (350)
T ss_dssp             ST--------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSC----------CCCTTTHHHHHHHHHHHTSSSC
T ss_pred             cc--------cchhhhhhhHHHHHHHHhCCCceEEEeeccccccCCcc----------cchhhhhhHHHHHHHHHhhccC
Confidence            21        24578889999999999998889999887543222111          1123457889999999899999


Q ss_pred             EEEEecCcccCCCCCCc-------------e--eeccccccccCCCCH-HHHHHHHHHHhcCCC--CCCcEEEeecCCCC
Q 022216          225 YTIIRPGGLRNEPPTGN-------------I--IMETEDTLYEGTISR-DQVAEVAVEALLHPE--SSYKVVEIISRVDA  286 (301)
Q Consensus       225 ~~~irpg~v~~~~~~~~-------------~--~~~~~~~~~~~~v~~-~Dva~~~~~~l~~~~--~~~~~~~v~~~~~~  286 (301)
                      ++++||+.+++......             .  ...........++++ +|+++++..++.++.  ..+++|++.+    
T Consensus       143 ~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~~G~~~~~~g----  218 (350)
T d1xgka_         143 STFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTF----  218 (350)
T ss_dssp             EEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEECS----
T ss_pred             ceeeeeceeeccccccccccccccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhhcCCeEEEEeC----
Confidence            99999998876432111             0  111112222235664 799999988886542  4678898886    


Q ss_pred             CCcCHHHHHHHhhc
Q 022216          287 PKRSYEDLFGSIKQ  300 (301)
Q Consensus       287 ~~~s~~e~~~~i~~  300 (301)
                      +.+|+.|+++.+++
T Consensus       219 ~~~T~~eia~~l~~  232 (350)
T d1xgka_         219 ETLSPVQVCAAFSR  232 (350)
T ss_dssp             EEECHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHH
Confidence            67999999999875

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.3e-23  Score=177.37  Aligned_cols=165  Identities=18%  Similarity=0.243  Sum_probs=122.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHH---HCCCeEEEEEeCCchhhhccc--cCCCCeEEEEccCCCChHhHHHHhc-------
Q 022216           66 QKKIFVAGATGSSGKRIVEQLL---AKGFAVKAGVRDLDKAKTTLS--KDNPSLQIVKADVTEGSAKLSEAIG-------  133 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~---~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~-------  133 (301)
                      +|+||||||++|||+++|++|+   ++|++|++.+|++++++++..  ....++.++.+|++| .+++.+++.       
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~   80 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGVTK   80 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHHHG
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc-HHHHHHHHhhhHHHhh
Confidence            6899999999999999999997   469999999999887665431  134689999999999 655554332       


Q ss_pred             -CCCCEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHH----Hc-----------CCCEEEEecccccccc
Q 022216          134 -DDSEAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACR----KR-----------GVNRFILISSILVNGA  188 (301)
Q Consensus       134 -~~~d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~----~~-----------~~~~iV~~SS~~~~~~  188 (301)
                       +++|++|||||+...         ++++.++++|+.|++.+++++.    +.           +.+++|++||...+-.
T Consensus        81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~  160 (248)
T d1snya_          81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ  160 (248)
T ss_dssp             GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred             cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence             149999999996432         1355678999999999988872    21           3479999999863211


Q ss_pred             cCCCCCCcchhhcchhhHHHHHHHHHHHHH-------HHcCCcEEEEecCcccCCCCCC
Q 022216          189 AMGQILNPAYIFLNVFGLTLIAKLQAEQYI-------RKSGINYTIIRPGGLRNEPPTG  240 (301)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~-------~~~~i~~~~irpg~v~~~~~~~  240 (301)
                        ..+       ...+..|..+|.+...+.       .+.||+++.|.||++.|++...
T Consensus       161 --~~~-------~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~~~  210 (248)
T d1snya_         161 --GNT-------DGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS  210 (248)
T ss_dssp             --TCC-------SCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT
T ss_pred             --CCC-------CCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcccc
Confidence              111       122456888888876544       3479999999999999997543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.3e-24  Score=181.27  Aligned_cols=191  Identities=18%  Similarity=0.138  Sum_probs=136.1

Q ss_pred             CC-eEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCchhhhccc---cCCCCeEEEEccCCCChHhHHHH-------hc
Q 022216           66 QK-KIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLDKAKTTLS---KDNPSLQIVKADVTEGSAKLSEA-------IG  133 (301)
Q Consensus        66 ~~-~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~-------~~  133 (301)
                      || ++|||||++|||++++++|+++ |++|++.+|+.+++++...   ....++.++++|++| .+++++.       ++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~-~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC-HHHHHHHHHHHHHhcC
Confidence            45 4599999999999999999986 8999999999887765432   245688999999999 6655544       34


Q ss_pred             CCCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCC-C---------
Q 022216          134 DDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQ-I---------  193 (301)
Q Consensus       134 ~~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~-~---------  193 (301)
                      . +|++|||||+....        +|+..+++|+.|++++++++...  ..++||++||.......... +         
T Consensus        81 ~-iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~  159 (275)
T d1wmaa1          81 G-LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE  159 (275)
T ss_dssp             S-EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred             C-cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhccc
Confidence            4 99999999975432        34567899999999999998542  22699999997643211100 0         


Q ss_pred             -CC------------------cchhhcchhhHHHHHHHHHHHHHH-------H----cCCcEEEEecCcccCCCCCCcee
Q 022216          194 -LN------------------PAYIFLNVFGLTLIAKLQAEQYIR-------K----SGINYTIIRPGGLRNEPPTGNII  243 (301)
Q Consensus       194 -~~------------------~~~~~~~~~~~y~~sK~~~e~~~~-------~----~~i~~~~irpg~v~~~~~~~~~~  243 (301)
                       ..                  .......+...|..+|.+...+.+       .    .||+++.|.||++.|++....  
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~--  237 (275)
T d1wmaa1         160 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK--  237 (275)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT--
T ss_pred             ccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc--
Confidence             00                  000011123468999998764431       1    389999999999999875432  


Q ss_pred             eccccccccCCCCHHHHHHHHHHHhc
Q 022216          244 METEDTLYEGTISRDQVAEVAVEALL  269 (301)
Q Consensus       244 ~~~~~~~~~~~v~~~Dva~~~~~~l~  269 (301)
                               ...+++|.|+.++.+..
T Consensus       238 ---------~~~~pee~A~~~~~~a~  254 (275)
T d1wmaa1         238 ---------ATKSPEEGAETPVYLAL  254 (275)
T ss_dssp             ---------CSBCHHHHTHHHHHHHS
T ss_pred             ---------ccCCHHHHHHHHHHHHc
Confidence                     24579999998877654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.88  E-value=7.7e-23  Score=173.66  Aligned_cols=197  Identities=18%  Similarity=0.147  Sum_probs=139.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCch---hhhcc---ccCCCCeEEEEccCCCChHhHHHHhcC----
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDK---AKTTL---SKDNPSLQIVKADVTEGSAKLSEAIGD----  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~---~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~----  134 (301)
                      +++||||||+|+||++++++|+++|+ +|+++.|+...   .++..   ...+.++.++.+|++| .+++.+.+..    
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d-~~~~~~~~~~i~~~   87 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLGGIGDD   87 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHTSCTT
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch-HHHHHHhhcccccc
Confidence            46999999999999999999999998 57777886433   22221   1245689999999999 7777777654    


Q ss_pred             -CCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          135 -DSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                       ++|.||||+|.....        +++..+++|+.|..++.++++..+.++||++||+...-..   +.         ..
T Consensus        88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~---~~---------~~  155 (259)
T d2fr1a1          88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGA---PG---------LG  155 (259)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCC---TT---------CT
T ss_pred             ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCC---cc---------cH
Confidence             589999999976532        3445678999999999999988777899999998743222   11         24


Q ss_pred             HHHHHHHHHHHHH---HHcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCCCCC
Q 022216          206 LTLIAKLQAEQYI---RKSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPESSY  275 (301)
Q Consensus       206 ~y~~sK~~~e~~~---~~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~  275 (301)
                      .|..+|...+.+.   +..|++++.|.||.+.+++.............-...++++++++++..++..+....
T Consensus       156 ~YaAaka~l~~la~~~~~~Gi~v~~I~pg~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~l~~~l~~~~~~~  228 (259)
T d2fr1a1         156 GYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQNALDRAEVCP  228 (259)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHHHHHTTCSSC
T ss_pred             HHHHHHHhHHHHHHHHHhCCCCEEECCCCcccCCccccchHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCceE
Confidence            5677888777554   457999999999988765432221111111111236889999999999998776443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.4e-23  Score=173.45  Aligned_cols=195  Identities=15%  Similarity=0.168  Sum_probs=136.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChH-------hHHHHhcC-CC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSA-------KLSEAIGD-DS  136 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-------~~~~~~~~-~~  136 (301)
                      ++|+||||||+|+||++++++|+++|++|++++++..+..       .....+..|..+ .+       .+.+.++. ++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i   72 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------SASVIVKMTDSF-TEQADQVTAEVGKLLGDQKV   72 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------SEEEECCCCSCH-HHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-------cccceeecccCc-HHHHHHHHHHHHHHhCCCCc
Confidence            4799999999999999999999999999999988765422       233344555544 22       22233332 59


Q ss_pred             CEEEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhh
Q 022216          137 EAVVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFG  205 (301)
Q Consensus       137 d~Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~  205 (301)
                      |++|||||....         ++|+..+++|+.+++++++++.+.  +.++||++||.+....            ...+.
T Consensus        73 D~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~------------~~~~~  140 (236)
T d1dhra_          73 DAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDG------------TPGMI  140 (236)
T ss_dssp             EEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTBH
T ss_pred             eEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCC------------ccCCc
Confidence            999999985321         235567899999999999998543  2369999999864321            12247


Q ss_pred             HHHHHHHHHHHHHHH---------cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC--CC
Q 022216          206 LTLIAKLQAEQYIRK---------SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE--SS  274 (301)
Q Consensus       206 ~y~~sK~~~e~~~~~---------~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~  274 (301)
                      .|..+|.+.+.+.+.         .||+++.|.||++.+++.....   + ...+..+..++|+|+.+..++....  ..
T Consensus       141 ~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~---~-~~~~~~~~~pe~va~~~~~l~s~~~~~i~  216 (236)
T d1dhra_         141 GYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSM---P-EADFSSWTPLEFLVETFHDWITGNKRPNS  216 (236)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHS---T-TSCGGGSEEHHHHHHHHHHHHTTTTCCCT
T ss_pred             ccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhC---c-cchhhcCCCHHHHHHHHHHHhCCCccCCC
Confidence            799999999877642         4799999999999998643221   1 1123357789999999976664332  45


Q ss_pred             CcEEEeecC
Q 022216          275 YKVVEIISR  283 (301)
Q Consensus       275 ~~~~~v~~~  283 (301)
                      |..+.+...
T Consensus       217 G~~i~v~~~  225 (236)
T d1dhra_         217 GSLIQVVTT  225 (236)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            666666554

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=3.3e-22  Score=172.74  Aligned_cols=219  Identities=17%  Similarity=0.184  Sum_probs=146.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh-----cCCCCEEEEc
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI-----GDDSEAVVCA  142 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~~~d~Vi~~  142 (301)
                      ||||||+||||++++++|+++|+ +|+++++-......... ....    ..|..+..+.....+     .. +++|+|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~   75 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNL-VDLN----IADYMDKEDFLIQIMAGEEFGD-VEAIFHE   75 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHH-HTSC----CSEEEEHHHHHHHHHTTCCCSS-CCEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcc-cccc----hhhhccchHHHHHHhhhhcccc-hhhhhhh
Confidence            89999999999999999999996 68887533222111000 0011    122222112222222     33 8999999


Q ss_pred             cCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-
Q 022216          143 TGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-  219 (301)
Q Consensus       143 Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-  219 (301)
                      |+....  .+.....++|+.++.+++++++..+++ +|+.||..+|........ +......+.+.|+.+|..+|.+++ 
T Consensus        76 aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~v~~ss~~~~~~~~~~~~-~~~~~~~~~~~Y~~~K~~~e~~~~~  153 (307)
T d1eq2a_          76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTSDFI-ESREYEKPLNVYGYSKFLFDEYVRQ  153 (307)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC-EEEEEEGGGGTTCCSCBC-SSGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccccccccccccc-ccccccccccccccccchhhhhccc
Confidence            985432  233445688899999999999999874 666666666654433322 222344567889999999998775 


Q ss_pred             ---HcCCcEEEEecCcccCCCCCCce--------------------eeccccccccCCCCHHHHHHHHHHHhcCCCCCCc
Q 022216          220 ---KSGINYTIIRPGGLRNEPPTGNI--------------------IMETEDTLYEGTISRDQVAEVAVEALLHPESSYK  276 (301)
Q Consensus       220 ---~~~i~~~~irpg~v~~~~~~~~~--------------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~  276 (301)
                         +++++++++||+.++||......                    ...+.......+++++|++.++...+..+.  ..
T Consensus       154 ~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~--~~  231 (307)
T d1eq2a_         154 ILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV--SG  231 (307)
T ss_dssp             HGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC--CE
T ss_pred             cccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhcc--cc
Confidence               46899999999999998543210                    111223334568999999999988887663  56


Q ss_pred             EEEeecCCCCCCcCHHHHHHHhhc
Q 022216          277 VVEIISRVDAPKRSYEDLFGSIKQ  300 (301)
Q Consensus       277 ~~~v~~~~~~~~~s~~e~~~~i~~  300 (301)
                      .|+++++   +..+++|+++.|.+
T Consensus       232 ~~~~~~~---~~~si~~i~~~i~~  252 (307)
T d1eq2a_         232 IFNLGTG---RAESFQAVADATLA  252 (307)
T ss_dssp             EEEESCS---CCBCHHHHHHHC--
T ss_pred             ccccccc---cchhHHHHHHHHHH
Confidence            8999986   99999999998864

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.88  E-value=7.6e-23  Score=171.23  Aligned_cols=195  Identities=14%  Similarity=0.087  Sum_probs=137.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCCh------HhHHHHhcC-CCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGS------AKLSEAIGD-DSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~------~~~~~~~~~-~~d~  138 (301)
                      ..+||||||+++||++++++|+++|++|++++|++....       .....+.+|+.+..      +.+.+.+.. ++|+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~   74 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   74 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-------cccceeccccCchhHHHHHHHHHHHHhcCCCeeE
Confidence            357899999999999999999999999999999876432       23334456665511      222232222 5999


Q ss_pred             EEEccCCCCC---------CCCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcchhhcchhhHH
Q 022216          139 VVCATGFQPG---------WDLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLT  207 (301)
Q Consensus       139 Vi~~Ag~~~~---------~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y  207 (301)
                      ||||||....         ++|+.++++|+.+++++++++.+.  +.++||++||...+..            ...+..|
T Consensus        75 linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~------------~~~~~~Y  142 (235)
T d1ooea_          75 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP------------TPSMIGY  142 (235)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CTTBHHH
T ss_pred             EEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCC------------cccccch
Confidence            9999996321         134556899999999999998543  2369999999864321            1224789


Q ss_pred             HHHHHHHHHHHHH---------cCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCCC---CCC
Q 022216          208 LIAKLQAEQYIRK---------SGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHPE---SSY  275 (301)
Q Consensus       208 ~~sK~~~e~~~~~---------~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~  275 (301)
                      ..+|.+.+.+.+.         .+++++.|.||.+.+++.....    .+..+..+++++|+++.++.++.++.   ..|
T Consensus       143 ~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~~----~~~~~~~~~~~~~va~~~~~~l~~~~~~~~tG  218 (235)
T d1ooea_         143 GMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWM----PNADHSSWTPLSFISEHLLKWTTETSSRPSSG  218 (235)
T ss_dssp             HHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHS----TTCCGGGCBCHHHHHHHHHHHHHCGGGCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhhC----cCCccccCCCHHHHHHHHHHHhcCccccCCCc
Confidence            9999999877642         4789999999999987543221    12223457899999999988876654   356


Q ss_pred             cEEEeecC
Q 022216          276 KVVEIISR  283 (301)
Q Consensus       276 ~~~~v~~~  283 (301)
                      ..+.|...
T Consensus       219 ~~i~v~~~  226 (235)
T d1ooea_         219 ALLKITTE  226 (235)
T ss_dssp             CEEEEEEE
T ss_pred             eEEEEEee
Confidence            67777554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.9e-22  Score=170.12  Aligned_cols=191  Identities=13%  Similarity=0.166  Sum_probs=139.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhH-------HHH
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKL-------SEA  131 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~-------~~~  131 (301)
                      .++||++|||||++|||+++|++|+++|++|++++|+.+++++...+    ....+..+.+|+++ .+.+       .+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~   89 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED-MTFAEQFVAQAGKL   89 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhh-HHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999998887765432    45678889999988 5333       333


Q ss_pred             hcCCCCEEEEccCCCCCC--------CCCCceeeehHHHHHHHHHHHH---cCCCEEEEecccccccccCCCCCCcchhh
Q 022216          132 IGDDSEAVVCATGFQPGW--------DLFAPWKVDNFGTVNLVEACRK---RGVNRFILISSILVNGAAMGQILNPAYIF  200 (301)
Q Consensus       132 ~~~~~d~Vi~~Ag~~~~~--------~~~~~~~~N~~g~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~~~~~~~  200 (301)
                      ++. +|+++||||.....        ++...+++|+.++..+++++..   .+.+++|++||.+.+-   +.        
T Consensus        90 ~g~-~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~---~~--------  157 (269)
T d1xu9a_          90 MGG-LDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV---AY--------  157 (269)
T ss_dssp             HTS-CSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS---CC--------
T ss_pred             hCC-ccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcC---CC--------
Confidence            455 99999999865432        3445689999999998888732   2337999999986432   11        


Q ss_pred             cchhhHHHHHHHHHHHHHH---------HcCCcEEEEecCcccCCCCCCceeeccccccccCCCCHHHHHHHHHHHhcCC
Q 022216          201 LNVFGLTLIAKLQAEQYIR---------KSGINYTIIRPGGLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEALLHP  271 (301)
Q Consensus       201 ~~~~~~y~~sK~~~e~~~~---------~~~i~~~~irpg~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~  271 (301)
                       ..+..|..+|.+.+.+.+         ..+|+++.|.||.+.|++.....    .........+++++|+.++......
T Consensus       158 -p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~~----~~~~~~~~~~~e~~a~~i~~~~~~~  232 (269)
T d1xu9a_         158 -PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAV----SGIVHMQAAPKEECALEIIKGGALR  232 (269)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHS----CGGGGGGCBCHHHHHHHHHHHHHTT
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHhc----cCCccccCCCHHHHHHHHHHHhhcC
Confidence             224678888888775442         24699999999999997533221    1111223568999999998776544

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3e-22  Score=169.86  Aligned_cols=205  Identities=20%  Similarity=0.264  Sum_probs=138.2

Q ss_pred             ccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCchhhhcc--ccCCCCeEEEEccCCCChHhHHHHhcC-----
Q 022216           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL--SKDNPSLQIVKADVTEGSAKLSEAIGD-----  134 (301)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----  134 (301)
                      +++|++|||||+|  |||+++|+.|+++|++|++.+|+.+..+...  .........+..|+.+ ..++.+.+..     
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE-DASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccch-HHHHHHHHHHhhhcc
Confidence            5799999999999  8999999999999999999999865433221  1134567788889988 5555444422     


Q ss_pred             -CCCEEEEccCCCCCC-------------CCCCceeeehHHHHHHHHHHHHc--CCCEEEEecccccccccCCCCCCcch
Q 022216          135 -DSEAVVCATGFQPGW-------------DLFAPWKVDNFGTVNLVEACRKR--GVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       135 -~~d~Vi~~Ag~~~~~-------------~~~~~~~~N~~g~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                       ++|++||||+.....             .+...+++|+.+...+++++...  +.+.||++||.....   +       
T Consensus        82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~---~-------  151 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---A-------  151 (258)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS---B-------
T ss_pred             cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc---C-------
Confidence             589999999864321             12334567777777787777543  235788888875321   1       


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc------ccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET------EDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~~  265 (301)
                        ...+..|..+|.+.+.+.+       .+||+++.|+||.+.|++.........      ...+...+..++|+|+++ 
T Consensus       152 --~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peeia~~v-  228 (258)
T d1qsga_         152 --IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSA-  228 (258)
T ss_dssp             --CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHH-
T ss_pred             --CCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCCCCCcCHHHHHHHH-
Confidence              1124668888998886654       368999999999999987543211100      011123467899999998 


Q ss_pred             HHhcCCCC---CCcEEEeec
Q 022216          266 EALLHPES---SYKVVEIIS  282 (301)
Q Consensus       266 ~~l~~~~~---~~~~~~v~~  282 (301)
                      .+|.++.+   .|+++.+.+
T Consensus       229 ~fL~s~~s~~itG~~i~vDG  248 (258)
T d1qsga_         229 AFLCSDLSAGISGEVVHVDG  248 (258)
T ss_dssp             HHHTSGGGTTCCSCEEEEST
T ss_pred             HHHhCchhcCccCceEEECc
Confidence            45555554   444555544

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=2.6e-21  Score=166.20  Aligned_cols=202  Identities=19%  Similarity=0.135  Sum_probs=126.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh-hcc----ccCCCCeEE-----------------EEccCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK-TTL----SKDNPSLQI-----------------VKADVTE  123 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~-~~~----~~~~~~~~~-----------------~~~Dl~~  123 (301)
                      ..++|||||+++||++++++|+++|++|++.+|+..+.. ++.    .........                 +.+|+++
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence            368999999999999999999999999999887754322 111    112233344                 4455776


Q ss_pred             ChHhHHHH-------hcCCCCEEEEccCCCCCC--------CCCC--------------ceeeehHHHHHHHHHHHHc--
Q 022216          124 GSAKLSEA-------IGDDSEAVVCATGFQPGW--------DLFA--------------PWKVDNFGTVNLVEACRKR--  172 (301)
Q Consensus       124 ~~~~~~~~-------~~~~~d~Vi~~Ag~~~~~--------~~~~--------------~~~~N~~g~~~l~~a~~~~--  172 (301)
                       .+++.+.       ++. +|++|||||.....        +|+.              .+++|+.+.+.+.+++.+.  
T Consensus        82 -~~~v~~~~~~~~~~~G~-iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~  159 (284)
T d1e7wa_          82 -FTRCAELVAACYTHWGR-CDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  159 (284)
T ss_dssp             -HHHHHHHHHHHHHHHSC-CCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCC-CCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhh
Confidence             5555554       455 99999999975421        2221              4678999999998886321  


Q ss_pred             --------CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCC
Q 022216          173 --------GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEP  237 (301)
Q Consensus       173 --------~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~  237 (301)
                              +..++|+++|.....   +         ...+..|..+|.+.+.+.+       .+||+++.|.||++.+..
T Consensus       160 ~~~~~~~~~~~~ii~~~s~~~~~---~---------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~  227 (284)
T d1e7wa_         160 GTPAKHRGTNYSIINMVDAMTNQ---P---------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD  227 (284)
T ss_dssp             TSCGGGSCSCEEEEEECCTTTTS---C---------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG
T ss_pred             hhHHHhcCCCCcccccccccccC---C---------ccceeeeccccccchhhhHHHHHHhCCccccccccccccccccc
Confidence                    235788888875321   1         1224678888888876553       479999999999754332


Q ss_pred             CCCc-eeec-ccc-ccccCCCCHHHHHHHHHHHhcCCCCC---CcEEEeec
Q 022216          238 PTGN-IIME-TED-TLYEGTISRDQVAEVAVEALLHPESS---YKVVEIIS  282 (301)
Q Consensus       238 ~~~~-~~~~-~~~-~~~~~~v~~~Dva~~~~~~l~~~~~~---~~~~~v~~  282 (301)
                      .... .... ... +....+..++|+|++++ +|.++.+.   |+++.+.+
T Consensus       228 ~~~~~~~~~~~~~~pl~~R~~~peeiA~~v~-fL~S~~s~~itG~~i~VDG  277 (284)
T d1e7wa_         228 DMPPAVWEGHRSKVPLYQRDSSAAEVSDVVI-FLCSSKAKYITGTCVKVDG  277 (284)
T ss_dssp             GSCHHHHHHHHTTCTTTTSCBCHHHHHHHHH-HHHSGGGTTCCSCEEEEST
T ss_pred             cCCHHHHHHHHhcCCCCCCCCCHHHHHHHHH-HHhCchhcCccCCeEEECc
Confidence            1111 0000 011 11234568999999995 55555544   44555544

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=1.8e-21  Score=163.19  Aligned_cols=196  Identities=17%  Similarity=0.125  Sum_probs=135.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-----CCCEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-----DSEAVV  140 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d~Vi  140 (301)
                      .|++|||||+++||+++|++|+++|++|++.+|+.+.         .+...+++|+++ .....+....     ..+.++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~---------~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~   70 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG---------EDLIYVEGDVTR-EEDVRRAVARAQEEAPLFAVV   70 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS---------SSSEEEECCTTC-HHHHHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc---------ccceEeeccccc-hhhhHHHHHhhhccccccchh
Confidence            4899999999999999999999999999999998654         356678899988 5444433321     356666


Q ss_pred             EccCCCCC------------CCCCCceeeehHHHHHHHHHHHH----------cCCCEEEEecccccccccCCCCCCcch
Q 022216          141 CATGFQPG------------WDLFAPWKVDNFGTVNLVEACRK----------RGVNRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       141 ~~Ag~~~~------------~~~~~~~~~N~~g~~~l~~a~~~----------~~~~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                      ++++....            +.++..+++|+.+..++++.+..          .+.++||++||...+-.          
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~----------  140 (241)
T d1uaya_          71 SAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG----------  140 (241)
T ss_dssp             ECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC----------
T ss_pred             hhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccC----------
Confidence            66654321            12445678999998888887632          23469999999864321          


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-----ccccccccCCCCHHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-----ETEDTLYEGTISRDQVAEVAVE  266 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~~~~  266 (301)
                        ......|..+|.+.+.+.+       .+||++|.|.||++.|++.......     .........+..++|+|++++.
T Consensus       141 --~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~R~g~pedvA~~v~f  218 (241)
T d1uaya_         141 --QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLH  218 (241)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCSCCCHHHHHHHHHH
T ss_pred             --CCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence              1224678888888876553       4799999999999998754332111     1111112345689999999977


Q ss_pred             HhcCCCCCCcEEEeecC
Q 022216          267 ALLHPESSYKVVEIISR  283 (301)
Q Consensus       267 ~l~~~~~~~~~~~v~~~  283 (301)
                      ++.+.-..|+++.+.++
T Consensus       219 L~s~~~iTG~~i~VDGG  235 (241)
T d1uaya_         219 ILENPMLNGEVVRLDGA  235 (241)
T ss_dssp             HHHCTTCCSCEEEESTT
T ss_pred             HHhCCCCCCCEEEECCc
Confidence            66654456677777553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.83  E-value=2.1e-21  Score=165.37  Aligned_cols=213  Identities=17%  Similarity=0.145  Sum_probs=133.7

Q ss_pred             cccCCeEEEEcCC--chHHHHHHHHHHHCCCeEEEEEeCCchhhh-ccccCCCCeEEEEccCCCChHhHH-------HHh
Q 022216           63 SVKQKKIFVAGAT--GSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-TLSKDNPSLQIVKADVTEGSAKLS-------EAI  132 (301)
Q Consensus        63 ~~~~~~vlVtGat--G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~-------~~~  132 (301)
                      .|++|++|||||+  .|||++++++|+++|++|++..|+.++..+ .......+...+++|+++ ++++.       +.+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~-~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeeccc-ccccccccchhhhcc
Confidence            3579999999964  579999999999999999999998876543 333355678899999998 53333       333


Q ss_pred             cC--CCCEEEEccCCCCCC--C-----------CCCceeeehHHHHHHHHHHHHcC-CCEEEEecccccccccCCCCCCc
Q 022216          133 GD--DSEAVVCATGFQPGW--D-----------LFAPWKVDNFGTVNLVEACRKRG-VNRFILISSILVNGAAMGQILNP  196 (301)
Q Consensus       133 ~~--~~d~Vi~~Ag~~~~~--~-----------~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~  196 (301)
                      ..  ++|+++||||+.+..  .           +...+++|........+++.... ...+++++|.....   ..    
T Consensus        82 ~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~---~~----  154 (268)
T d2h7ma1          82 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR---AM----  154 (268)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---CC----
T ss_pred             ccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---cC----
Confidence            32  489999999965421  1           11223455555555555554432 23444444443211   11    


Q ss_pred             chhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCcee-------e--------ccccc--ccc
Q 022216          197 AYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNII-------M--------ETEDT--LYE  252 (301)
Q Consensus       197 ~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~-------~--------~~~~~--~~~  252 (301)
                           ..+..|+.+|.+.+.+.+       ..||+++.|.||.+.+++..+...       .        .....  ...
T Consensus       155 -----p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~r  229 (268)
T d2h7ma1         155 -----PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGW  229 (268)
T ss_dssp             -----TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             -----cccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCCCCC
Confidence                 124678888988886554       468999999999999874221100       0        00011  112


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCcEEEeecCCCCCCc
Q 022216          253 GTISRDQVAEVAVEALLHPESSYKVVEIISRVDAPKR  289 (301)
Q Consensus       253 ~~v~~~Dva~~~~~~l~~~~~~~~~~~v~~~~~~~~~  289 (301)
                      .+..++|+|+++. +|.++.+.+.+.++...|+|...
T Consensus       230 r~~~p~dva~~v~-fL~Sd~a~~iTG~~i~vDGG~~~  265 (268)
T d2h7ma1         230 NMKDATPVAKTVC-ALLSDWLPATTGDIIYADGGAHT  265 (268)
T ss_dssp             CTTCCHHHHHHHH-HHHSSSCTTCCSEEEEESTTGGG
T ss_pred             CCCCHHHHHHHHH-HHhCchhcCccCCEEEECcCccc
Confidence            2568999999995 55567655555554444444443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.83  E-value=1.2e-20  Score=161.29  Aligned_cols=204  Identities=16%  Similarity=0.190  Sum_probs=126.8

Q ss_pred             ccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCchhhhcc--ccCCCCeEEEEccCCCChHhHHHHh-------
Q 022216           64 VKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL--SKDNPSLQIVKADVTEGSAKLSEAI-------  132 (301)
Q Consensus        64 ~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~-------  132 (301)
                      |++|++|||||+|  +||+++|++|+++|++|++++|+.+..+...  ........++.+|+++ ++.+.+.+       
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccc-hhhHHHHHHHHHHHc
Confidence            5799999999877  8999999999999999999999864322211  1134567788999999 65544444       


Q ss_pred             cCCCCEEEEccCCCCCC--------CCCCceeeeh----HHHHHHHHHHHHc-CC-CEEEEecccccccccCCCCCCcch
Q 022216          133 GDDSEAVVCATGFQPGW--------DLFAPWKVDN----FGTVNLVEACRKR-GV-NRFILISSILVNGAAMGQILNPAY  198 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~~--------~~~~~~~~N~----~g~~~l~~a~~~~-~~-~~iV~~SS~~~~~~~~~~~~~~~~  198 (301)
                      +. +|++|||+|.....        +++..+..+.    .+...+.+...+. +. ..++++|+.+.....         
T Consensus        82 g~-id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~---------  151 (274)
T d2pd4a1          82 GS-LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM---------  151 (274)
T ss_dssp             SC-EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC---------
T ss_pred             CC-CCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccccc---------
Confidence            45 99999999965421        1111111222    2233333333322 22 345555555432211         


Q ss_pred             hhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee------ccccccccCCCCHHHHHHHHH
Q 022216          199 IFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM------ETEDTLYEGTISRDQVAEVAV  265 (301)
Q Consensus       199 ~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~------~~~~~~~~~~v~~~Dva~~~~  265 (301)
                         .....|+.+|.+.+.+.+       .+||+++.|.||.+.+++.......      .........+..++|+|++++
T Consensus       152 ---~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedIA~~v~  228 (274)
T d2pd4a1         152 ---AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGM  228 (274)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHH
T ss_pred             ---ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhccCCcCHHHHHHHHH
Confidence               123557788888776543       4789999999999999864332110      011122235689999999985


Q ss_pred             HHhcCCCC---CCcEEEeec
Q 022216          266 EALLHPES---SYKVVEIIS  282 (301)
Q Consensus       266 ~~l~~~~~---~~~~~~v~~  282 (301)
                       +|.++.+   .|+++.+.+
T Consensus       229 -fL~S~~s~~itG~~i~vDG  247 (274)
T d2pd4a1         229 -YLLSSLSSGVSGEVHFVDA  247 (274)
T ss_dssp             -HHHSGGGTTCCSCEEEEST
T ss_pred             -HHhChhhCCCcCceEEECC
Confidence             4545544   455555554

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.82  E-value=9.6e-20  Score=154.69  Aligned_cols=202  Identities=17%  Similarity=0.166  Sum_probs=125.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh-----ccccCCCCeEEEEccCCCCh---H-------hHHHH
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT-----TLSKDNPSLQIVKADVTEGS---A-------KLSEA  131 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~-----~~~~~~~~~~~~~~Dl~~~~---~-------~~~~~  131 (301)
                      .++|||||+++||++++++|+++|++|++++|+.++..+     +..........+..|+.+..   +       .+.+.
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999765422     11224567777777776521   2       23345


Q ss_pred             hcCCCCEEEEccCCCCCCCC--------CC-----------ceeeehHHHHHHHHHHHHc---------CCCEEEEeccc
Q 022216          132 IGDDSEAVVCATGFQPGWDL--------FA-----------PWKVDNFGTVNLVEACRKR---------GVNRFILISSI  183 (301)
Q Consensus       132 ~~~~~d~Vi~~Ag~~~~~~~--------~~-----------~~~~N~~g~~~l~~a~~~~---------~~~~iV~~SS~  183 (301)
                      ++. +|++|||||.......        ..           .+..|..+...........         ....++.+++.
T Consensus        82 ~g~-iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (266)
T d1mxha_          82 FGR-CDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA  160 (266)
T ss_dssp             HSC-CCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred             hCC-CCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence            566 9999999997543211        11           1233444444444443221         12356666665


Q ss_pred             ccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceee-ccccccc--cC
Q 022216          184 LVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIM-ETEDTLY--EG  253 (301)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~-~~~~~~~--~~  253 (301)
                      .....            ...+..|..+|.+.+.+.+       .+||+++.|.||++.++.....-.. .......  ..
T Consensus       161 ~~~~~------------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~pl~r~  228 (266)
T d1mxha_         161 MTDLP------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQEEYRRKVPLGQS  228 (266)
T ss_dssp             GGGSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSCHHHHHHHHTTCTTTSC
T ss_pred             ccccc------------CcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCCHHHHHHHHhcCCCCCC
Confidence            42211            1235778888988886553       4799999999999988764432111 1111111  22


Q ss_pred             CCCHHHHHHHHHHHhcCCCC---CCcEEEeec
Q 022216          254 TISRDQVAEVAVEALLHPES---SYKVVEIIS  282 (301)
Q Consensus       254 ~v~~~Dva~~~~~~l~~~~~---~~~~~~v~~  282 (301)
                      +.+++|+|++++ +|.++.+   .|+++.+.+
T Consensus       229 ~~~peeva~~v~-fL~s~~s~~itG~~i~vDG  259 (266)
T d1mxha_         229 EASAAQIADAIA-FLVSKDAGYITGTTLKVDG  259 (266)
T ss_dssp             CBCHHHHHHHHH-HHHSGGGTTCCSCEEEEST
T ss_pred             CCCHHHHHHHHH-HHhCchhCCccCCeEEECc
Confidence            358999999995 5545543   455665554

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.81  E-value=4.9e-20  Score=159.15  Aligned_cols=208  Identities=17%  Similarity=0.168  Sum_probs=129.6

Q ss_pred             hcccCCeEEEEcCCc--hHHHHHHHHHHHCCCeEEEEEeCCchhh-------------hcccc-CCC---CeEEEEccCC
Q 022216           62 VSVKQKKIFVAGATG--SSGKRIVEQLLAKGFAVKAGVRDLDKAK-------------TTLSK-DNP---SLQIVKADVT  122 (301)
Q Consensus        62 ~~~~~~~vlVtGatG--~iG~~~~~~l~~~G~~V~~~~r~~~~~~-------------~~~~~-~~~---~~~~~~~Dl~  122 (301)
                      +++++|++|||||+|  |||++++++|+++|++|++..|++....             ..... ...   .+..+..++.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence            578999999999987  9999999999999999999888642211             00000 001   1222222221


Q ss_pred             ------------------CC--h----HhHHHHhcCCCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHH
Q 022216          123 ------------------EG--S----AKLSEAIGDDSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEA  168 (301)
Q Consensus       123 ------------------~~--~----~~~~~~~~~~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a  168 (301)
                                        +.  .    +.+.+.++. +|++|||||....          ++|...+++|+.+.++++++
T Consensus        84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~-iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~  162 (297)
T d1d7oa_          84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGS-IDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH  162 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSC-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCC-CcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence                              10  1    344455666 9999999986321          23566789999999999999


Q ss_pred             HHHcC--CCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHH--------HHcCCcEEEEecCcccCCCC
Q 022216          169 CRKRG--VNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYI--------RKSGINYTIIRPGGLRNEPP  238 (301)
Q Consensus       169 ~~~~~--~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~--------~~~~i~~~~irpg~v~~~~~  238 (301)
                      +....  .++++.+++.+......           .....|..+|...+.+.        .++||+++.|.||++.+++.
T Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~  231 (297)
T d1d7oa_         163 FLPIMNPGGASISLTYIASERIIP-----------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAA  231 (297)
T ss_dssp             HGGGEEEEEEEEEEECGGGTSCCT-----------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCS
T ss_pred             HHHHhhcCCcceeeeehhhccccc-----------ccccceecccccccccccccchhccccceEEecccccccccchhh
Confidence            86442  24566666654321111           11234566666554332        35799999999999999876


Q ss_pred             CCceeec------cccccccCCCCHHHHHHHHHHHhcCCCCC---CcEEEeec
Q 022216          239 TGNIIME------TEDTLYEGTISRDQVAEVAVEALLHPESS---YKVVEIIS  282 (301)
Q Consensus       239 ~~~~~~~------~~~~~~~~~v~~~Dva~~~~~~l~~~~~~---~~~~~v~~  282 (301)
                      .......      ....+...+..++|+|+++ .+|.++.+.   |+++.+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v-~fL~S~~a~~itGq~i~vDG  283 (297)
T d1d7oa_         232 KAIGFIDTMIEYSYNNAPIQKTLTADEVGNAA-AFLVSPLASAITGATIYVDN  283 (297)
T ss_dssp             SCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHH-HHHTSGGGTTCCSCEEEEST
T ss_pred             hhccCCHHHHHHHHhCCCCCCCCCHHHHHHHH-HHHhCchhcCCcCceEEECc
Confidence            5431110      0111123467899999998 566666544   45555544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.80  E-value=4.4e-19  Score=149.84  Aligned_cols=201  Identities=18%  Similarity=0.121  Sum_probs=119.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH----hcC---CCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA----IGD---DSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~---~~d~  138 (301)
                      +|+||||||+++||++++++|+++|++|++++|+..+.              ..|+.+ .+.....    ...   .+|+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~--------------~~d~~~-~~~~~~~~~~~~~~~~~~id~   65 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV--------------IADLST-AEGRKQAIADVLAKCSKGMDG   65 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE--------------ECCTTS-HHHHHHHHHHHHTTCTTCCSE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH--------------HHHhcC-HHHHHHHHHHHHHHhCCCCcE
Confidence            58999999999999999999999999999999875432              356666 4332222    111   4999


Q ss_pred             EEEccCCCCCC-CCCCceeeehHHHHHHHHHH----HHcCCCEEEEeccccccc-ccCCCCCCc---------------c
Q 022216          139 VVCATGFQPGW-DLFAPWKVDNFGTVNLVEAC----RKRGVNRFILISSILVNG-AAMGQILNP---------------A  197 (301)
Q Consensus       139 Vi~~Ag~~~~~-~~~~~~~~N~~g~~~l~~a~----~~~~~~~iV~~SS~~~~~-~~~~~~~~~---------------~  197 (301)
                      ++||||..... .+.....+|..+...+.+..    .+........+++..... .....+...               .
T Consensus        66 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~  145 (257)
T d1fjha_          66 LVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH  145 (257)
T ss_dssp             EEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHT
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhc
Confidence            99999976543 33445567888877776665    333345566665543211 110000000               0


Q ss_pred             hhhcchhhHHHHHHHHHHHHHH-------HcCCcEEEEecCcccCCCCCCceeecc-------ccccccCCCCHHHHHHH
Q 022216          198 YIFLNVFGLTLIAKLQAEQYIR-------KSGINYTIIRPGGLRNEPPTGNIIMET-------EDTLYEGTISRDQVAEV  263 (301)
Q Consensus       198 ~~~~~~~~~y~~sK~~~e~~~~-------~~~i~~~~irpg~v~~~~~~~~~~~~~-------~~~~~~~~v~~~Dva~~  263 (301)
                      .........|..+|.+.+.+.+       .+||++|.|.||++.|++.........       .......+..++|+|++
T Consensus       146 ~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~PlgR~g~p~eva~~  225 (257)
T d1fjha_         146 AGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASV  225 (257)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CCCSTTSCCCTHHHHHH
T ss_pred             cCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHhcCCCCCCCcCHHHHHHH
Confidence            0011223469999999987654       478999999999999986543321110       01122346689999999


Q ss_pred             HHHHhcCCCCC---CcEEEeec
Q 022216          264 AVEALLHPESS---YKVVEIIS  282 (301)
Q Consensus       264 ~~~~l~~~~~~---~~~~~v~~  282 (301)
                      + .+|.++.+.   |+++.+.+
T Consensus       226 v-~fL~S~~s~~itG~~i~vDG  246 (257)
T d1fjha_         226 I-AFLMSPAASYVHGAQIVIDG  246 (257)
T ss_dssp             H-HHHTSGGGTTCCSCEEEEST
T ss_pred             H-HHHhCchhCCccCceEEeCC
Confidence            9 566666544   45555543

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.79  E-value=2.8e-19  Score=156.61  Aligned_cols=159  Identities=15%  Similarity=0.154  Sum_probs=107.0

Q ss_pred             CCeEEEEc--CCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc------------ccc---CCCCeEEEEc---------
Q 022216           66 QKKIFVAG--ATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT------------LSK---DNPSLQIVKA---------  119 (301)
Q Consensus        66 ~~~vlVtG--atG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~------------~~~---~~~~~~~~~~---------  119 (301)
                      +|++||||  +++|||++++++|+++|++|++..+........            ...   .........+         
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence            68999999  557999999999999999999987765321110            000   0111222323         


Q ss_pred             -----------cCCCCh------HhHHHHhcCCCCEEEEccCCCCC----------CCCCCceeeehHHHHHHHHHHHHc
Q 022216          120 -----------DVTEGS------AKLSEAIGDDSEAVVCATGFQPG----------WDLFAPWKVDNFGTVNLVEACRKR  172 (301)
Q Consensus       120 -----------Dl~~~~------~~~~~~~~~~~d~Vi~~Ag~~~~----------~~~~~~~~~N~~g~~~l~~a~~~~  172 (301)
                                 |+++..      +.+.+.+++ +|++|||||....          ++|...+++|+.+++.+++++.+.
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~-iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGK-INMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCC-EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCC-CCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence                       444421      334455566 9999999985431          245567889999999999998653


Q ss_pred             --CCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHH--------HcCCcEEEEecCcccCC
Q 022216          173 --GVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIR--------KSGINYTIIRPGGLRNE  236 (301)
Q Consensus       173 --~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~--------~~~i~~~~irpg~v~~~  236 (301)
                        ..++||++||.+...   ..   +.|     .+.|+.+|.+.+.+.+        ++|||||.|.||.+.|+
T Consensus       161 m~~~GsIv~iss~~~~~---~~---p~y-----~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~  223 (329)
T d1uh5a_         161 MKPQSSIISLTYHASQK---VV---PGY-----GGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR  223 (329)
T ss_dssp             EEEEEEEEEEECGGGTS---CC---TTC-----TTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCT
T ss_pred             cccccccccceeehhcc---cc---ccc-----chhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccch
Confidence              236899999876332   11   111     2457788888875543        36999999999999884

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.58  E-value=7.5e-17  Score=129.95  Aligned_cols=145  Identities=19%  Similarity=0.105  Sum_probs=99.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcCCCCEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAV  139 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~V  139 (301)
                      .++++|+|+||||+|+||+++++.|+++|++|++++|+.++.++....  ...++.+..+|++| .+.+.+.+++ +|+|
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~-iDil   96 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD-DASRAEAVKG-AHFV   96 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS-HHHHHHHTTT-CSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhccc-HHHHHHHhcC-cCee
Confidence            578899999999999999999999999999999999998877654332  22456678899999 8999999999 9999


Q ss_pred             EEccCCCC----CCCCCCceeeehHHHHHHHHHHHHcCC---CEEEEecccccccccCCCCCCcchhhcchhhHHHHHHH
Q 022216          140 VCATGFQP----GWDLFAPWKVDNFGTVNLVEACRKRGV---NRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKL  212 (301)
Q Consensus       140 i~~Ag~~~----~~~~~~~~~~N~~g~~~l~~a~~~~~~---~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~  212 (301)
                      |||||...    .++|+..+++|+.+..+.+..+.....   .....+++...++..           ......|..+|.
T Consensus        97 in~Ag~g~~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~g~~~y~~sk~  165 (191)
T d1luaa1          97 FTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEYGGKRAFGAL-----------GIGGLKLKLHRA  165 (191)
T ss_dssp             EECCCTTCCCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTTCEEEEETTEEEECHH-----------HHHHHHHHHHHH
T ss_pred             eecCccccccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhccCcEEecceEEEecc-----------CcCcHHHHHHHH
Confidence            99998632    233555556666555544433321111   122333333222210           011235788888


Q ss_pred             HHHHHHH
Q 022216          213 QAEQYIR  219 (301)
Q Consensus       213 ~~e~~~~  219 (301)
                      +.+++.+
T Consensus       166 a~~~l~~  172 (191)
T d1luaa1         166 CIAKLFE  172 (191)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHHh
Confidence            8887664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.60  E-value=1.6e-07  Score=69.60  Aligned_cols=96  Identities=24%  Similarity=0.285  Sum_probs=72.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag~  145 (301)
                      |+|+|.|+ |.+|+.+++.|.+.|++|++++++++..+++..  ..+..++.+|.+| .+.+.++ +.+ .|.++.+..-
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~--~~~~~vi~Gd~~~-~~~l~~~~i~~-a~~vv~~t~~   75 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA--EIDALVINGDCTK-IKTLEDAGIED-ADMYIAVTGK   75 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--HCSSEEEESCTTS-HHHHHHTTTTT-CSEEEECCSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhh--hhhhhhccCcccc-hhhhhhcChhh-hhhhcccCCc
Confidence            68999998 999999999999999999999999887766542  2367899999999 7777776 355 8988875421


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                               -+.|+    .++..+++.+.+++|-.
T Consensus        76 ---------d~~N~----~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          76 ---------EEVNL----MSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             ---------HHHHH----HHHHHHHHTTCCCEEEE
T ss_pred             ---------HHHHH----HHHHHHHHcCCceEEEE
Confidence                     02343    34556677787777643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.55  E-value=2.6e-07  Score=69.42  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=77.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      ||.|+||+|.+|++++-.|+..|.  ++++++.+..+.+.+--...........-+ . .....+.+++ .|+||.+||.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~-~-~~~~~~~~~~-aDivVitag~   78 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYL-G-PEQLPDCLKG-CDVVVIPAGV   78 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEE-S-GGGHHHHHTT-CSEEEECCSC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEE-c-CCChHHHhCC-CCEEEECCCc
Confidence            789999999999999999998884  688878765443321111111111112122 2 3567788899 9999999995


Q ss_pred             CC--CCCCCCceeeehHHHHHHHHHHHHcCCCEE-EEecc
Q 022216          146 QP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRF-ILISS  182 (301)
Q Consensus       146 ~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~i-V~~SS  182 (301)
                      ..  .++....++.|..-...+++.+++++.+-+ +.+|.
T Consensus        79 ~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          79 PRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            43  355667789999999999999999876544 44444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.35  E-value=9.2e-07  Score=68.49  Aligned_cols=74  Identities=20%  Similarity=0.337  Sum_probs=59.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .|+|+|.|| |.+|+.+++.|.++|++|++++|+.++.+++.. ..........+..+ .....+.+.. .|.++.+.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~-~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA-GVQHSTPISLDVND-DAALDAEVAK-HDLVISLI   75 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT-TCTTEEEEECCTTC-HHHHHHHHTT-SSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh-cccccccccccccc-hhhhHhhhhc-cceeEeec
Confidence            589999997 999999999999999999999999998887764 33445555566666 6777777877 88888765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.34  E-value=2.5e-06  Score=62.96  Aligned_cols=72  Identities=32%  Similarity=0.317  Sum_probs=59.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH-hcCCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA-IGDDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~~d~Vi~~Ag  144 (301)
                      |+++|.|+ |.+|+.+++.|.+.|++|++++.+++..+++..   .....+.+|.++ ++.+.++ +.+ +|.||-+.+
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~---~~~~~~~gd~~~-~~~l~~a~i~~-a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS---YATHAVIANATE-ENELLSLGIRN-FEYVIVAIG   73 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT---TCSEEEECCTTC-TTHHHHHTGGG-CSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH---hCCcceeeeccc-chhhhccCCcc-ccEEEEEcC
Confidence            56888887 999999999999999999999999888777643   456778899999 6777776 566 998887653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.33  E-value=7.4e-07  Score=66.99  Aligned_cols=108  Identities=15%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcc------ccCCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTL------SKDNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~------~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      +.+||.|.|+ |.+|..++..|+..|  .+|++++++++..+...      ............|..        .+++ .
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~--------~~~~-a   73 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS--------DCKD-A   73 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG--------GGTT-C
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH--------Hhcc-c
Confidence            3679999996 999999999999988  58999998875433111      001223344444432        3577 9


Q ss_pred             CEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          137 EAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      |+||.+||...  ..+....+..|..-...+++.+++.+.+-++.+-|
T Consensus        74 divvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             SEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            99999998644  34556677889999999999999987655555544

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.27  E-value=1.8e-06  Score=64.65  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=73.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCch--hh----hcc---ccCCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDK--AK----TTL---SKDNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~--~~----~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      |||.|+||+|.+|..++-.|+..|  .++.+++++++.  .+    ++.   .....++.....--.|     .+.+++ 
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-----~~~l~~-   74 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-----LRIIDE-   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-----GGGGTT-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-----HHHhcc-
Confidence            689999999999999999999998  488888887532  11    111   1122233332211111     235677 


Q ss_pred             CCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       136 ~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                      .|+||.+||...  .++....++.|..-...+++.+++.+.+.++.+
T Consensus        75 aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV  121 (145)
T d1hyea1          75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI  121 (145)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             ceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence            999999999644  334455678899999999999988875555544

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.1e-05  Score=64.93  Aligned_cols=178  Identities=7%  Similarity=0.054  Sum_probs=101.6

Q ss_pred             cccCCeEEEEcC----------------CchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC-h
Q 022216           63 SVKQKKIFVAGA----------------TGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-S  125 (301)
Q Consensus        63 ~~~~~~vlVtGa----------------tG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~  125 (301)
                      +++||+||||+|                ||..|.++++++..+|++|+++.-.....      .+..+..+...-.+. .
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~------~p~~~~~~~~~t~~~m~   76 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP------TPPFVKRVDVMTALEME   76 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC------CCTTEEEEECCSHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC------cccccccceehhhHHHH
Confidence            467889999875                79999999999999999999876543321      234566555432221 1


Q ss_pred             HhHHHHhcCCCCEEEEccCCCCC-------C------CCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCC
Q 022216          126 AKLSEAIGDDSEAVVCATGFQPG-------W------DLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQ  192 (301)
Q Consensus       126 ~~~~~~~~~~~d~Vi~~Ag~~~~-------~------~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~  192 (301)
                      +.+.+.+.+ .|++|++|++...       .      .....+..++.-+-.+++...+....+.+.++-.+..      
T Consensus        77 ~~~~~~~~~-~D~~i~aAAvsDf~~~~~~~~k~Kk~~~~~~~l~L~L~~tpdIL~~l~~~k~~~~~~VGFaaEt------  149 (223)
T d1u7za_          77 AAVNASVQQ-QNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAET------  149 (223)
T ss_dssp             HHHHHHGGG-CSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECCCHHHHHHHCSSSCCEEEEEEEES------
T ss_pred             HHHHhhhcc-ceeEeeeechhhhhhhhhhhhhcccccccccccceeeecCHHHHHHHHhhccCCceEEEEeecc------
Confidence            555566677 9999999987541       0      0111234455556667777755433333444443311      


Q ss_pred             CCCcchhhcchhhHHHHHHHHHHHHHHHcCCcEEEEecC----cccCCCCCCceeeccccccccCCCCHHHHHHHHHHHh
Q 022216          193 ILNPAYIFLNVFGLTLIAKLQAEQYIRKSGINYTIIRPG----GLRNEPPTGNIIMETEDTLYEGTISRDQVAEVAVEAL  268 (301)
Q Consensus       193 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~~~irpg----~v~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l  268 (301)
                         +.           .-+.+.++ +.+.+.++.+...-    ..+|........+........+..+=.++|+.++..+
T Consensus       150 ---~~-----------l~~~A~~K-l~~K~~D~IvAN~v~~~~~~fgsd~n~v~ii~~~~~~~~~~~sK~~iA~~Il~~I  214 (223)
T d1u7za_         150 ---NN-----------VEEYARQK-RIRKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERKELLGQLLLDEI  214 (223)
T ss_dssp             ---SS-----------HHHHHHHH-HHHHTCSEEEEEECSSTTSSTTSSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHH
T ss_pred             ---cc-----------hhhHHHHH-HHhcCCCEEEeecccCCCCCcCCCceEEEEEECCCeEEcCCCCHHHHHHHHHHHH
Confidence               00           01222333 45688998887642    2333322223333332222223456688888887655

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.15  E-value=2.5e-06  Score=66.52  Aligned_cols=107  Identities=11%  Similarity=0.056  Sum_probs=70.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      ++.+|||+||+|++|...++.....|++|+++++++++.+.... ......+..-|-.. .+.+.+.... ++|+||++.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~-~~~~~~~~~~~Gvd~v~D~v  106 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGFDAAFNYKTVNS-LEEALKKASPDGYDCYFDNV  106 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEEEETTSCSC-HHHHHHHHCTTCEEEEEESS
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh-hhhhhhcccccccH-HHHHHHHhhcCCCceeEEec
Confidence            47899999999999999999999999999999998877665543 22222222222222 3444444443 699999998


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAA  189 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~  189 (301)
                      |..              .....+++++..  ++++.++..+.|+..
T Consensus       107 G~~--------------~~~~~~~~l~~~--G~~v~~G~~~~~~~~  136 (182)
T d1v3va2         107 GGE--------------FLNTVLSQMKDF--GKIAICGAISVYNRM  136 (182)
T ss_dssp             CHH--------------HHHHHGGGEEEE--EEEEECCCGGGTTCT
T ss_pred             Cch--------------hhhhhhhhccCC--CeEEeecceeecccc
Confidence            621              012333333333  589988877665443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.15  E-value=7.2e-07  Score=70.03  Aligned_cols=41  Identities=27%  Similarity=0.437  Sum_probs=36.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~  107 (301)
                      |||.|+||+|.+|+++++.|+++|++|++.+|++++++++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~   41 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKA   41 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            67999999999999999999999999999999988766543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.08  E-value=9.5e-06  Score=60.91  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcc-------ccCCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTL-------SKDNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      .+++|.|+|+ |.+|..++-.|+..|.  ++++++++++..+...       ......+.+...|.        +.+.+ 
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--------~~l~d-   74 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--------DDCRD-   74 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--------GGTTT-
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--------HHhcc-
Confidence            4679999997 9999999999999874  7888888776533211       11122333433332        34677 


Q ss_pred             CCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       136 ~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      .|+||.+||...  .+.....+..|..-...+++.+++.+.+ .+|.+|-
T Consensus        75 aDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          75 ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             ceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            999999999654  3445566788888889999999888754 4555443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=5e-06  Score=62.20  Aligned_cols=110  Identities=19%  Similarity=0.168  Sum_probs=71.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHH-HCC--CeEEEEEeCCchhhhc---cccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLL-AKG--FAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~-~~G--~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      |+|.|+|++|.+|++++-.|+ +.+  .++.+++..+ ..+..   +...........  +.. .. -.+.+++ .|+||
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~--~~~-~~-~~~~~~~-aDvvv   74 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKG--FSG-ED-ATPALEG-ADVVL   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEE--ECS-SC-CHHHHTT-CSEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcE--EEc-CC-CccccCC-CCEEE
Confidence            689999999999999998876 434  6888877654 22211   111111111111  111 11 2346788 99999


Q ss_pred             EccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCE-EEEecc
Q 022216          141 CATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNR-FILISS  182 (301)
Q Consensus       141 ~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~-iV~~SS  182 (301)
                      .+||...  .++....++.|..-...+.+.+.+.+.+. +|.+|.
T Consensus        75 itaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          75 ISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             ECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            9999643  34556778899999999999998887544 555544

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=4.8e-06  Score=64.35  Aligned_cols=99  Identities=16%  Similarity=0.200  Sum_probs=66.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      ++.+|||+||+|.+|...++.+...|++|+++++++++.+.... .+  ...+ .|.++.  .+.+.+...+ ++|+||.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~-~G--a~~v-i~~~~~~~~~~i~~~t~~~g~d~v~d  103 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ-NG--AHEV-FNHREVNYIDKIKKYVGEKGIDIIIE  103 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TT--CSEE-EETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccc-cC--cccc-cccccccHHHHhhhhhccCCceEEee
Confidence            47899999999999999999999999999999988776654443 22  2211 355551  2445555544 5999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      +.|-.              .....++.+++.  +++|.++..
T Consensus       104 ~~g~~--------------~~~~~~~~l~~~--G~iv~~G~~  129 (174)
T d1yb5a2         104 MLANV--------------NLSKDLSLLSHG--GRVIVVGSR  129 (174)
T ss_dssp             SCHHH--------------HHHHHHHHEEEE--EEEEECCCC
T ss_pred             cccHH--------------HHHHHHhccCCC--CEEEEEecC
Confidence            87621              123334444443  588887643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=2.5e-05  Score=53.54  Aligned_cols=88  Identities=15%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      ++++|+|+|.|. |..|.++++.|.+.|++|++.+.+........  ......+......  .    ..+.+ +|.||..
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~--~~~~~~~~~~~~~--~----~~~~~-~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDK--LPEAVERHTGSLN--D----EWLMA-ADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGG--SCTTSCEEESBCC--H----HHHHH-CSEEEEC
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHH--Hhhccceeecccc--h----hhhcc-CCEEEEC
Confidence            357899999998 88999999999999999999987654322111  1234444444432  1    23456 9999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCC
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      -|+...              ..+++.+++.|+
T Consensus        72 PGi~~~--------------~~~~~~a~~~gi   89 (93)
T d2jfga1          72 PGIALA--------------HPSLSAAADAGI   89 (93)
T ss_dssp             TTSCTT--------------SHHHHHHHHTTC
T ss_pred             CCCCCC--------------CHHHHHHHHcCC
Confidence            887532              237888888776

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.98  E-value=4.9e-06  Score=64.46  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~A  143 (301)
                      ++.+|||+||+|++|...++.+...|++|++..+++++.+.... ...... +  |-.+..+...+...+ ++|+||.+.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~-lGa~~v-i--~~~~~~~~~~~~~~~~gvD~vid~v  106 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-LGAKEV-L--AREDVMAERIRPLDKQRWAAAVDPV  106 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-TTCSEE-E--ECC---------CCSCCEEEEEECS
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh-ccccee-e--ecchhHHHHHHHhhccCcCEEEEcC
Confidence            47899999999999999999888999999999999888766543 222222 2  222211222233333 699999998


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      |-..              ....++.++..  +|+|.++...
T Consensus       107 gg~~--------------~~~~l~~l~~~--Griv~~G~~~  131 (176)
T d1xa0a2         107 GGRT--------------LATVLSRMRYG--GAVAVSGLTG  131 (176)
T ss_dssp             TTTT--------------HHHHHHTEEEE--EEEEECSCCS
T ss_pred             Cchh--------------HHHHHHHhCCC--ceEEEeeccc
Confidence            7321              23334444443  5898888764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.97  E-value=1.4e-05  Score=59.79  Aligned_cols=105  Identities=21%  Similarity=0.226  Sum_probs=70.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcc-------ccCCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTL-------SKDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |||.|+|+ |.+|..++-.|+.+|  .+++++++++++.+...       ............|.        +.+++ .|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~--------~~l~~-ad   71 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--------AALAD-AD   71 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--------GGGTT-CS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH--------HHhcc-cc
Confidence            68999996 999999999999887  47888887766533211       11222333333332        23577 99


Q ss_pred             EEEEccCCCC------CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEec
Q 022216          138 AVVCATGFQP------GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (301)
Q Consensus       138 ~Vi~~Ag~~~------~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~S  181 (301)
                      +||.+||...      ..+....++.|..-...+++.+++.+.+-++.+-
T Consensus        72 iVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivv  121 (146)
T d1hyha1          72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI  121 (146)
T ss_dssp             EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             EEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            9999999642      2244556778998899999999988755444443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.97  E-value=2.1e-05  Score=60.24  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHh----cCCCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAI----GDDSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~~~d~Vi  140 (301)
                      .+.+|+|+| +|.+|...+..+...|++|+++++++++++.... ......+..-+..+....+.+.+    ++.+|+||
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi  103 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-CGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTI  103 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH-cCCcEEEeccccccccchhhhhhhcccccCCceee
Confidence            367999998 5999999999999999999999999887765443 22333332222222133333333    33599999


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      .++|..             ......++.++..  +++++++.
T Consensus       104 d~~g~~-------------~~~~~a~~~~~~~--G~iv~~G~  130 (170)
T d1e3ja2         104 DCSGNE-------------KCITIGINITRTG--GTLMLVGM  130 (170)
T ss_dssp             ECSCCH-------------HHHHHHHHHSCTT--CEEEECSC
T ss_pred             ecCCCh-------------HHHHHHHHHHhcC--CceEEEec
Confidence            998742             1123334444443  58888774

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.96  E-value=2.3e-05  Score=59.14  Aligned_cols=111  Identities=12%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      .+.+||.|.|+ |.+|+.++..|+..|. ++++++.+++..+....+       .........      ....++++++ 
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~-   76 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA------EYSYEAALTG-   76 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE------ECSHHHHHTT-
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec------cCchhhhhcC-
Confidence            35689999997 9999999998888884 888888777654332110       111111111      1224567788 


Q ss_pred             CCEEEEccCCCCC-------CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          136 SEAVVCATGFQPG-------WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       136 ~d~Vi~~Ag~~~~-------~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      .|+||.+||....       .+....+..|..-...+++.+++.+.+-++.+-|
T Consensus        77 adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          77 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            9999999986432       1345567788888999999999887655555443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.96  E-value=9.7e-06  Score=62.43  Aligned_cols=74  Identities=24%  Similarity=0.272  Sum_probs=52.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++++|||+||+|.+|...++.+...|++|+++++++++.+..+. .+...  + .|..+ .........+ +|+||.+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~-lGa~~--~-i~~~~-~~~~~~~~~g-~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-LGAEE--A-ATYAE-VPERAKAWGG-LDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-TTCSE--E-EEGGG-HHHHHHHTTS-EEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc-cccce--e-eehhh-hhhhhhcccc-ccccccccc
Confidence            47899999999999999999988999999999988877665543 22221  1 24433 2222223345 999999876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.93  E-value=7.1e-06  Score=63.77  Aligned_cols=100  Identities=15%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      ++.+|||+||+|++|...++.+...|.+|+++++++++.+.+.. .+  ...+ .|..++  .+.+.+...+ ++|++|.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~-~G--a~~v-i~~~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR-LG--VEYV-GDSRSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT-TC--CSEE-EETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc-cc--cccc-ccCCccCHHHHHHHHhCCCCEEEEEe
Confidence            37899999999999999999888889999999988777655443 22  2222 244442  2555555543 6999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +.|..              ....++++++..  +++|.++...
T Consensus       101 ~~g~~--------------~~~~~~~~l~~~--G~~v~~G~~~  127 (183)
T d1pqwa_         101 SLAGE--------------AIQRGVQILAPG--GRFIELGKKD  127 (183)
T ss_dssp             CCCTH--------------HHHHHHHTEEEE--EEEEECSCGG
T ss_pred             cccch--------------HHHHHHHHhcCC--CEEEEEccCC
Confidence            98721              123344444443  5899987654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.90  E-value=0.00014  Score=51.56  Aligned_cols=97  Identities=15%  Similarity=0.226  Sum_probs=68.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +++++|+|||.|+ |.+|..-++.|++.|++|++.+........... ...++.+...++.+ .     .+.+ .+.|+.
T Consensus         8 l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~-----dl~~-~~lv~~   78 (113)
T d1pjqa1           8 CQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQFTVWA-NEGMLTLVEGPFDE-T-----LLDS-CWLAIA   78 (113)
T ss_dssp             ECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHH-TTTSCEEEESSCCG-G-----GGTT-CSEEEE
T ss_pred             EEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChHHHHHH-hcCCceeeccCCCH-H-----HhCC-CcEEee
Confidence            4678999999998 999999999999999999998766554332222 34577777766654 2     2456 888887


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +.+-             -.-...+.+.|++.+  .+|++..
T Consensus        79 at~d-------------~~~n~~i~~~a~~~~--ilVNv~D  104 (113)
T d1pjqa1          79 ATDD-------------DTVNQRVSDAAESRR--IFCNVVD  104 (113)
T ss_dssp             CCSC-------------HHHHHHHHHHHHHTT--CEEEETT
T ss_pred             cCCC-------------HHHHHHHHHHHHHcC--CEEEeCC
Confidence            6531             111346778888875  4788654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.88  E-value=3.2e-05  Score=58.53  Aligned_cols=108  Identities=19%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhccc-------cCCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLS-------KDNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      ..++|.|.|+ |.+|..++-.|+..|.  ++++++++++..+....       ...........|.        +.+++ 
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~--------~~~~~-   88 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY--------SVTAN-   88 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG--------GGGTT-
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch--------hhccc-
Confidence            4679999996 9999999999999985  78888887654422110       0112222222222        23677 


Q ss_pred             CCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          136 SEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       136 ~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      .|+||.+||...  .++....++.|..-...+++.+++.+.+ -+|++|.
T Consensus        89 adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          89 SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             ccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            999999999643  3455567788998889999999888754 4555544

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=2.5e-05  Score=59.13  Aligned_cols=109  Identities=17%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcc-------ccCCCCeEEEEccCCCChHhHHHHhcC
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTL-------SKDNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      ++..+|.|+|+ |.+|..++-.|+..|.  ++++++++++......       ............|.        +.+++
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~--------~~~~~   87 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY--------NVSAN   87 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG--------GGGTT
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch--------hhhcc
Confidence            45568999996 9999999999999984  7888887765433211       00112222222332        23567


Q ss_pred             CCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          135 DSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                       .|+||.+||...  .++....++.|..-...+++.+++.+.+ .++.+|.
T Consensus        88 -adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          88 -SKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             -EEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             -ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence             999999998643  3456677888999889998888887754 4455444

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.84  E-value=2.8e-05  Score=57.84  Aligned_cols=105  Identities=15%  Similarity=0.088  Sum_probs=70.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      |||.|+|+ |.+|+.++..|+..|  .++++++++++..+....+       ......+...  .|     .+.+.+ .|
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~-----~~~~~d-ad   71 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--ND-----YADTAN-SD   71 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SC-----GGGGTT-CS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CC-----HHHhcC-Ce
Confidence            57999996 999999999999998  4899888887654422110       1122333221  11     234677 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                      +||.+||...  ..+....++.|..-...+++.+.+.+.+-++.+
T Consensus        72 vvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiviv  116 (142)
T d1guza1          72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV  116 (142)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence            9999999643  233445567788888888888888765444443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=3e-05  Score=60.21  Aligned_cols=80  Identities=20%  Similarity=0.309  Sum_probs=62.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccc---c--CCCCeEEEEccCCCChHhHHHHhcCC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLS---K--DNPSLQIVKADVTEGSAKLSEAIGDD  135 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~---~--~~~~~~~~~~Dl~~~~~~~~~~~~~~  135 (301)
                      ..+++|+|+|.|+ |+.|++++..|++.|. ++++..|+++..++...   .  ..........|+.+ .+.+.+.+.+ 
T Consensus        14 ~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-   90 (182)
T d1vi2a1          14 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-QQAFAEALAS-   90 (182)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHHT-
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc-ccchhhhhcc-
Confidence            3457899999998 9999999999999997 78888998876554221   0  12234456788888 7888888888 


Q ss_pred             CCEEEEccC
Q 022216          136 SEAVVCATG  144 (301)
Q Consensus       136 ~d~Vi~~Ag  144 (301)
                      .|+|||+..
T Consensus        91 ~diiIN~Tp   99 (182)
T d1vi2a1          91 ADILTNGTK   99 (182)
T ss_dssp             CSEEEECSS
T ss_pred             cceeccccC
Confidence            999999974

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.82  E-value=1.1e-05  Score=61.41  Aligned_cols=73  Identities=27%  Similarity=0.393  Sum_probs=56.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .+++++|||.|+ |.+|+.+++.|.+.|. ++.+..|+.++..++....  +...     .+ -+.+.+.+.+ .|+||.
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~--~~~~-----~~-~~~~~~~l~~-~Divi~   90 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL--GGEA-----VR-FDELVDHLAR-SDVVVS   90 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH--TCEE-----CC-GGGHHHHHHT-CSEEEE
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh--hccc-----cc-chhHHHHhcc-CCEEEE
Confidence            467899999998 9999999999999997 6888888877776655321  2222     22 3567788888 999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      +.+.
T Consensus        91 atss   94 (159)
T d1gpja2          91 ATAA   94 (159)
T ss_dssp             CCSS
T ss_pred             ecCC
Confidence            9864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=1.9e-05  Score=58.57  Aligned_cols=104  Identities=17%  Similarity=0.148  Sum_probs=70.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      |||.|.|+ |.+|..++-.|+..|  .+++++++++++++....+      ..........|.        +.+++ .|+
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~--------~~~~~-adi   70 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY--------ADLKG-SDV   70 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG--------GGGTT-CSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH--------HHhcC-CCE
Confidence            58899997 999999999999887  4788888876554321110      122333333222        24677 999


Q ss_pred             EEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       139 Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                      ||.+||....  ......+..|..-...+++.+++.+.+-++.+
T Consensus        71 vvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aiviv  114 (140)
T d1a5za1          71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV  114 (140)
T ss_dssp             EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEE
Confidence            9999996543  23345567788888889999988875545554

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1.2e-05  Score=62.25  Aligned_cols=77  Identities=21%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+++|||+||+|++|..+++.+...|++|+++++++++.+..+. .+.. ++  .|.+++  .+.+.+..++ .+|+|+.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~-lGa~-~v--i~~~~~d~~~~v~~~t~g~g~d~v~d  103 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AGAW-QV--INYREEDLVERLKEITGGKKVRVVYD  103 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTCS-EE--EETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh-cCCe-EE--EECCCCCHHHHHHHHhCCCCeEEEEe
Confidence            37899999999999999999888889999999999888766543 2222 22  355542  2455555444 6899999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      +.|.
T Consensus       104 ~~g~  107 (179)
T d1qora2         104 SVGR  107 (179)
T ss_dssp             CSCG
T ss_pred             CccH
Confidence            8863

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.77  E-value=3.4e-05  Score=57.25  Aligned_cols=106  Identities=13%  Similarity=0.066  Sum_probs=70.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCc--hhh----hccc--cCCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLD--KAK----TTLS--KDNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~--~~~----~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      ||.|+||+|.+|..++-.|+.+|.  ++++++++..  ..+    ++..  .......+...|..        .+.+ .|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~--------~~~~-aD   72 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE--------DTAG-SD   72 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG--------GGTT-CS
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH--------Hhhh-cC
Confidence            789999999999999999999984  6777775432  111    1110  02233444443322        2467 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      +||.+||...  .++....++.|..-...+++.+++.+.+ .++.+|.
T Consensus        73 iVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          73 VVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             EEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            9999999543  2344556788999899999999988754 4444433

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.77  E-value=5.1e-06  Score=63.81  Aligned_cols=77  Identities=25%  Similarity=0.301  Sum_probs=50.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++.+|||+||+|++|...++-....|++|+++.++.++.+.+.. ......+..-|...  +.+...-++++|+||.+.|
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~-lGad~vi~~~~~~~--~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ-LGASEVISREDVYD--GTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH-HTCSEEEEHHHHCS--SCCCSSCCCCEEEEEESCC
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh-hcccceEeccchhc--hhhhcccCCCceEEEecCc
Confidence            36689999999999999998888889999999999888776554 22222221112111  1111111225899998876

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.77  E-value=1.3e-05  Score=63.35  Aligned_cols=76  Identities=21%  Similarity=0.222  Sum_probs=51.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC------------ChHhHHHHhcC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE------------GSAKLSEAIGD  134 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~------------~~~~~~~~~~~  134 (301)
                      |+|.|.|. |++|..++..|++.|++|++.+.+.+..+.+....   ..+.+-++.+            ......+++.+
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~---~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~   76 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK---SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD   76 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC---CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccC---CcccchhhhhhhhhhhcccccccCCCHHHHHhh
Confidence            67999975 99999999999999999999998877666554311   1111111100            01234556667


Q ss_pred             CCCEEEEccCCCC
Q 022216          135 DSEAVVCATGFQP  147 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~  147 (301)
                       .|+++.|.+...
T Consensus        77 -~d~i~i~VpTP~   88 (202)
T d1mv8a2          77 -SDVSFICVGTPS   88 (202)
T ss_dssp             -CSEEEECCCCCB
T ss_pred             -CCEEEEecCccc
Confidence             999999987653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.76  E-value=2.5e-05  Score=58.07  Aligned_cols=105  Identities=12%  Similarity=0.036  Sum_probs=66.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcccc------CCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTLSK------DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      +||.|+|+ |.+|..++-.|+..|.  ++++++++++..+....+      .........+        ..+.+.+ .|+
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--------~~~~~~~-adi   71 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG--------DYSDVKD-CDV   71 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----------CGGGGTT-CSE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC--------cHHHhCC-Cce
Confidence            47888897 9999999999999974  899988887653321110      1122222222        1235677 999


Q ss_pred             EEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCE-EEEec
Q 022216          139 VVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNR-FILIS  181 (301)
Q Consensus       139 Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~-iV~~S  181 (301)
                      ||.+||....  ++....++.|..-...+++.+++.+.+- +|.+|
T Consensus        72 vvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          72 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             EEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             EEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            9999996542  3444556788888899999998887544 44443

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=1.5e-05  Score=52.41  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=37.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~  106 (301)
                      ++++|||+||+|++|...++.+...|++|+++.+++++.+.+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            478999999999999999998888999999999988776543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=3.3e-06  Score=64.03  Aligned_cols=111  Identities=12%  Similarity=0.081  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC----e---EEEEEe--CCchhhhcc----ccCCCCeEEEEccCCCChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF----A---VKAGVR--DLDKAKTTL----SKDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~----~---V~~~~r--~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      .++|.|+||+|++|++++-.|+..+.    .   ..++.-  ..+..+...    .........+...     ....+.+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~   78 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEAT-----DDPKVAF   78 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-----SCHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccC-----Cchhhhc
Confidence            56999999999999999999998653    1   122211  112211111    0011223333322     2346778


Q ss_pred             cCCCCEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcC-C-CEEEEecc
Q 022216          133 GDDSEAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRG-V-NRFILISS  182 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~-~-~~iV~~SS  182 (301)
                      ++ .|+||.+||....  .+....++.|..-...+.+.+.+.. . ..++.+|.
T Consensus        79 ~~-advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN  131 (154)
T d1y7ta1          79 KD-ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN  131 (154)
T ss_dssp             TT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             cc-ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            88 9999999997543  3444566788888899999988853 2 34555544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=3.1e-05  Score=59.24  Aligned_cols=77  Identities=14%  Similarity=0.063  Sum_probs=53.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|+|.|+ |++|...++.+...|++|+++++++++.+.... .+.. .++  |..++.+...+..+. +|+++.+.+
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~-lGa~-~~i--~~~~~~~~~~~~~~~-~d~vi~~~~  100 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MGAD-HYI--ATLEEGDWGEKYFDT-FDLIVVCAS  100 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCS-EEE--EGGGTSCHHHHSCSC-EEEEEECCS
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhc-cCCc-EEe--eccchHHHHHhhhcc-cceEEEEec
Confidence            3789999997 999999998887889999999999888765543 2222 222  222212333344445 999999987


Q ss_pred             CCC
Q 022216          145 FQP  147 (301)
Q Consensus       145 ~~~  147 (301)
                      ...
T Consensus       101 ~~~  103 (168)
T d1piwa2         101 SLT  103 (168)
T ss_dssp             CST
T ss_pred             CCc
Confidence            543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=3.8e-05  Score=58.30  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=47.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCC-CeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNP-SLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |+|+|.|+ |.+|..++..|++.|++|.++.|++............ ........ .+    ..+.... +|+||.+.
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~-~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLT-AN----DPDFLAT-SDLLLVTL   71 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEE-ES----CHHHHHT-CSEEEECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccc-cc----hhhhhcc-cceEEEee
Confidence            78999998 9999999999999999999999988765443221111 11111111 11    1234456 99999876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.69  E-value=0.00018  Score=53.74  Aligned_cols=43  Identities=21%  Similarity=0.249  Sum_probs=37.6

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT  106 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~  106 (301)
                      ...++|.|.||.|.+|+.+++.|.++|++|.+.+|+.....+.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~   49 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAES   49 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccch
Confidence            3578999999999999999999999999999999987665443

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.68  E-value=9.9e-05  Score=54.71  Aligned_cols=105  Identities=18%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcccc-------CCCCeEEE-EccCCCChHhHHHHhcCCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSK-------DNPSLQIV-KADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~-------~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      ++|.|+|+ |.+|..++-.|+..+. ++++++.+++..+....+       ......+. ..|.        +.+.+ .|
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~--------~~~~~-ad   71 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--------ADTAN-SD   71 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--------GGGTT-CS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH--------HHhcC-CC
Confidence            58899996 9999999999988874 888888777654322110       01122222 1222        23566 99


Q ss_pred             EEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEec
Q 022216          138 AVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILIS  181 (301)
Q Consensus       138 ~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~S  181 (301)
                      +||.+||...  ..+....++.|..-...+++...+.+.+-++.+-
T Consensus        72 vvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivv  117 (142)
T d1uxja1          72 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV  117 (142)
T ss_dssp             EEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEEC
T ss_pred             EEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEe
Confidence            9999999643  3455667788988889999999887755454443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=0.00021  Score=53.05  Aligned_cols=87  Identities=13%  Similarity=0.063  Sum_probs=53.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC----CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG----FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +|+|.|.||||++|+.+++.|+++.    .+++.+.++......... .....  ...++.+     ...+.+ +|++|.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~-~~~~~--~~~~~~~-----~~~~~~-~DivF~   71 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSF-GGTTG--TLQDAFD-----LEALKA-LDIIVT   71 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGG-GTCCC--BCEETTC-----HHHHHT-CSEEEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccc-cCCce--eeecccc-----hhhhhc-CcEEEE
Confidence            4689999999999999999888764    356666655433221111 01111  1222333     223567 999999


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCC
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN  175 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~  175 (301)
                      +++-              .-...+...+.+.|.+
T Consensus        72 a~~~--------------~~s~~~~~~~~~~g~~   91 (146)
T d1t4ba1          72 CQGG--------------DYTNEIYPKLRESGWQ   91 (146)
T ss_dssp             CSCH--------------HHHHHHHHHHHHTTCC
T ss_pred             ecCc--------------hHHHHhhHHHHhcCCC
Confidence            8842              2256677777777753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.65  E-value=8.3e-05  Score=57.28  Aligned_cols=99  Identities=17%  Similarity=0.220  Sum_probs=64.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccC-----CCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKD-----NPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      |+|.|.|+ |.+|..++..|+++|++|++.+|+++..+......     ............. .....+.+++ .|+||.
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~-aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL-TSDIGLAVKD-ADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEE-ESCHHHHHTT-CSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhh-hhhhHhHhcC-CCEEEE
Confidence            79999998 99999999999999999999999887665543211     1111111111111 1236778888 999998


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHc-CCCEEEEecc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKR-GVNRFILISS  182 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iV~~SS  182 (301)
                      +...              .....+++.++.. ..+.+|.+++
T Consensus        79 ~v~~--------------~~~~~~~~~i~~~l~~~~~iv~~~  106 (184)
T d1bg6a2          79 VVPA--------------IHHASIAANIASYISEGQLIILNP  106 (184)
T ss_dssp             CSCG--------------GGHHHHHHHHGGGCCTTCEEEESS
T ss_pred             EEch--------------hHHHHHHHHhhhccCCCCEEEEeC
Confidence            7521              1245677776654 2245555444

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=3.1e-05  Score=59.40  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=66.4

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ...++|+|||.|+ ||.+++++-+|.+.|.+|+++.|+.++.+++.............+..+    .  .... +|+|||
T Consensus        14 ~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~----~--~~~~-~dliIN   85 (170)
T d1nyta1          14 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE----L--EGHE-FDLIIN   85 (170)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG----G--TTCC-CSEEEE
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccccc----c--cccc-cceeec
Confidence            3557899999997 999999999999999999999999887766543221111122222222    1  1234 999999


Q ss_pred             ccCCC--CCCC---------CCCceeeehHH-HHHHHHHHHHcCCCEEE
Q 022216          142 ATGFQ--PGWD---------LFAPWKVDNFG-TVNLVEACRKRGVNRFI  178 (301)
Q Consensus       142 ~Ag~~--~~~~---------~~~~~~~N~~g-~~~l~~a~~~~~~~~iV  178 (301)
                      +....  ....         ....+|+++.- .-.+++.+++.|++.++
T Consensus        86 ~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~i  134 (170)
T d1nyta1          86 ATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNA  134 (170)
T ss_dssp             CCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHHHHHHHHTTCCEEE
T ss_pred             ccccCcccCCCCCcHHHhccCcEEEEeecCCCCCHHHHHHHHcCCCccc
Confidence            86432  1110         11123444432 12477777777654333

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.62  E-value=1.3e-05  Score=60.18  Aligned_cols=106  Identities=14%  Similarity=0.171  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhcccc-------CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSK-------DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      ..||.|.|+ |.+|..++-.|+..+ .++.+++++++..+....+       ...+..+...+       ..+.+++ .|
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-------~~~~~~~-ad   73 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-------TYDDLAG-AD   73 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-------CGGGGTT-CS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-------cccccCC-Cc
Confidence            358999996 999999998888877 4888888877654432111       11222233221       1234577 99


Q ss_pred             EEEEccCCCCC--C-----CCCCceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          138 AVVCATGFQPG--W-----DLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       138 ~Vi~~Ag~~~~--~-----~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                      +||.+||....  +     +....++.|..-...+++.+++.+.+-++.+
T Consensus        74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aiviv  123 (150)
T d1t2da1          74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV  123 (150)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            99999996432  1     2345578888889999999998876555444

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.62  E-value=7.8e-05  Score=55.30  Aligned_cols=105  Identities=17%  Similarity=0.207  Sum_probs=70.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcc---cc---CCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTL---SK---DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~---~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      .||.|+|+ |.+|.+++-.|+.+|.  +++++++++++.+...   ..   ......+...+  +     .+.+++ .|+
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~-----~~~~~d-aDv   72 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--D-----PEICRD-ADM   72 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--C-----GGGGTT-CSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--C-----HHHhhC-CcE
Confidence            47889997 9999999999999984  7888888775543211   00   11122222211  1     224677 999


Q ss_pred             EEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          139 VVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       139 Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                      ||.+||...  .++..+.++.|..-...+++.+++.+.+-++.+
T Consensus        73 VVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~iv  116 (143)
T d1llda1          73 VVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML  116 (143)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             EEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEE
Confidence            999999654  234445677888888899999988876444443

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.61  E-value=9e-05  Score=56.80  Aligned_cols=106  Identities=19%  Similarity=0.246  Sum_probs=66.5

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc--CCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK--DNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      ..++|+|+|.|+ |+.+++++..|.+.+.+|+++.|+.++.+.+...  ...++....-|-.+        +.+ .|+||
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~--------~~~-~diiI   84 (171)
T d1p77a1          15 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIP--------LQT-YDLVI   84 (171)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCC--------CSC-CSEEE
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhcccc--------ccc-cceee
Confidence            456899999997 9999999999999888999999998877655432  12234444433221        345 99999


Q ss_pred             EccCCCCCCC-----------CCCceeeehH-HH-HHHHHHHHHcCCCEEE
Q 022216          141 CATGFQPGWD-----------LFAPWKVDNF-GT-VNLVEACRKRGVNRFI  178 (301)
Q Consensus       141 ~~Ag~~~~~~-----------~~~~~~~N~~-g~-~~l~~a~~~~~~~~iV  178 (301)
                      |+.......+           ....++.++. -. -.+++.|++.|...++
T Consensus        85 N~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g~~~v~  135 (171)
T d1p77a1          85 NATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVS  135 (171)
T ss_dssp             ECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCEE
T ss_pred             ecccccccccccchhhhhhcccceeeeeeccCcccHHHHHHHHHcCCCccc
Confidence            9975422111           1223455552 21 2466777776654443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.59  E-value=7.5e-05  Score=55.36  Aligned_cols=106  Identities=17%  Similarity=0.064  Sum_probs=70.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCchhhhcc-------ccCCCCeEEEE-ccCCCChHhHHHHhcCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLDKAKTTL-------SKDNPSLQIVK-ADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~~~~~~~-------~~~~~~~~~~~-~Dl~~~~~~~~~~~~~~~  136 (301)
                      |||.|.|+ |.+|..++-.|+.+|  .++++++++++..+...       ........+.. .|.        +.+++ .
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~--------~~~~~-a   70 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--------SLLKG-S   70 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG--------GGGTT-C
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH--------HHhcc-c
Confidence            68899996 999999999999887  37888888775533211       00112222222 222        35677 9


Q ss_pred             CEEEEccCCCCC--CCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          137 EAVVCATGFQPG--WDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      |+||..||....  .+....+..|..-...+++.+++.+.+-++.+-|
T Consensus        71 diVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             cEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            999999986442  3444566788888888999988887554544433

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00016  Score=55.15  Aligned_cols=100  Identities=16%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHH----hcCCCCEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEA----IGDDSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~~~d~V  139 (301)
                      .+.+|+|.|+ |.+|...+..+...|+ +|++.++++++++.... .+.. .++..+-.+ .....+.    .+.++|+|
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~-~Ga~-~~~~~~~~~-~~~~~~~~~~~~g~g~Dvv  101 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-IGAD-LVLQISKES-PQEIARKVEGQLGCKPEVT  101 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-TTCS-EEEECSSCC-HHHHHHHHHHHHTSCCSEE
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH-hCCc-ccccccccc-cccccccccccCCCCceEE
Confidence            3679999987 9999999999999998 79988988887765432 2222 122222223 3333332    22259999


Q ss_pred             EEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          140 VCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       140 i~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |.+.|..             ......++.+++.  +++++++..
T Consensus       102 id~~G~~-------------~~~~~a~~~~~~g--G~iv~~G~~  130 (171)
T d1pl8a2         102 IECTGAE-------------ASIQAGIYATRSG--GTLVLVGLG  130 (171)
T ss_dssp             EECSCCH-------------HHHHHHHHHSCTT--CEEEECSCC
T ss_pred             EeccCCc-------------hhHHHHHHHhcCC--CEEEEEecC
Confidence            9998742             1122233444432  588887643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.57  E-value=1.5e-05  Score=61.49  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC---C----eEEEEEeCCch--hhhcc---c-cCCCCeEEEEccCCCChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG---F----AVKAGVRDLDK--AKTTL---S-KDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G---~----~V~~~~r~~~~--~~~~~---~-~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      ..+|.||||+|.||.+++-.|++..   .    .+.+++.+...  ++.+.   . ........+..  +   ....+.+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~--~---~~~~~~~   98 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--G---IDPYEVF   98 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--E---SCHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccc--c---ccchhhc
Confidence            4589999999999999999998752   1    44444444321  11111   0 01122222221  1   2356788


Q ss_pred             cCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHcCC--CEEEEecc
Q 022216          133 GDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKRGV--NRFILISS  182 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~--~~iV~~SS  182 (301)
                      ++ .|+||..||...  .++....++.|..-...+.+++.+...  .+++.+|.
T Consensus        99 ~~-aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N  151 (175)
T d7mdha1          99 ED-VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  151 (175)
T ss_dssp             TT-CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             cC-CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence            88 999999999653  345566778899989999999988632  24555543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.9e-05  Score=60.04  Aligned_cols=42  Identities=26%  Similarity=0.284  Sum_probs=37.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~  107 (301)
                      +.+|||+||+|++|...++-....|++|+++.+++++.+.+.
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~   73 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK   73 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH
Confidence            468999999999999999988889999999999988866544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.0002  Score=53.54  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=57.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-CCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +++|.|. |-+|..+++.|.+.|++|+++..+++...+.... ...++.++.+|.+| ++.+.++--++.|.||-+.
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d-~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSND-SSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS-HHHHHHHTTTTCSEEEECS
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcc-hHHHHHhccccCCEEEEcc
Confidence            6899998 8999999999999999999999887653332211 34689999999999 7777665333489999775

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00012  Score=55.73  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+.+|+|.|+ |++|...++.+...|+++++++++.++.+.... .+.. .+  .|..+ .+......++ +|++|.+.|
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~-lGad-~~--i~~~~-~~~~~~~~~~-~D~vid~~g  102 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LGAD-EV--VNSRN-ADEMAAHLKS-FDFILNTVA  102 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HTCS-EE--EETTC-HHHHHTTTTC-EEEEEECCS
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHhc-cCCc-EE--EECch-hhHHHHhcCC-Cceeeeeee
Confidence            3789999986 999999998888899999998888877654332 2211 11  35555 4555555556 999999987


Q ss_pred             CC
Q 022216          145 FQ  146 (301)
Q Consensus       145 ~~  146 (301)
                      ..
T Consensus       103 ~~  104 (168)
T d1uufa2         103 AP  104 (168)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00018  Score=55.56  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=62.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCC-h----HhHHHHhcC-CCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-S----AKLSEAIGD-DSE  137 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~----~~~~~~~~~-~~d  137 (301)
                      .|.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.... .+.. .+  .|..+. .    +.+.+...+ .+|
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-~v--i~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-IGAD-LT--LNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-TTCS-EE--EETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECC-Cccchhheeccccccccccccccccccccccccc-ccce-EE--EeccccchHHHHHHHHHhhCCCCce
Confidence            4789999997 9999999999999997 79999998887665432 2222 22  234331 1    223333333 499


Q ss_pred             EEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          138 AVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       138 ~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +||.+.|...             .....++.++..  ++++.++-
T Consensus       103 vvid~vG~~~-------------~~~~a~~~l~~~--G~iv~~G~  132 (182)
T d1vj0a2         103 FILEATGDSR-------------ALLEGSELLRRG--GFYSVAGV  132 (182)
T ss_dssp             EEEECSSCTT-------------HHHHHHHHEEEE--EEEEECCC
T ss_pred             EEeecCCchh-------------HHHHHHHHhcCC--CEEEEEee
Confidence            9999987531             123334444443  58888763

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=8.8e-05  Score=57.67  Aligned_cols=103  Identities=16%  Similarity=0.121  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEE-EEeCCchhhhccccCCCCeEEEEccCCCC--hHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKA-GVRDLDKAKTTLSKDNPSLQIVKADVTEG--SAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~~~~~d~Vi~~  142 (301)
                      +++|||+||+|++|...++.+...|.++++ ..++.++..++..+.... .  ..|..++  .+.+.+...+++|+||.+
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad-~--vi~~~~~~~~~~~~~~~~~GvDvv~D~  107 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD-A--AVNYKTGNVAEQLREACPGGVDVYFDN  107 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS-E--EEETTSSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce-E--EeeccchhHHHHHHHHhccCceEEEec
Confidence            478999999999999999888888986554 455545544433222222 2  2344431  244444443369999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~  187 (301)
                      .|-.              -....++.++..  ++++.+++++.|.
T Consensus       108 vGg~--------------~~~~~~~~l~~~--G~iv~~G~~s~~~  136 (187)
T d1vj1a2         108 VGGD--------------ISNTVISQMNEN--SHIILCGQISQYN  136 (187)
T ss_dssp             SCHH--------------HHHHHHTTEEEE--EEEEEC-------
T ss_pred             CCch--------------hHHHHhhhcccc--ccEEEeccccccc
Confidence            8621              012233333332  5899988876543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.39  E-value=0.00085  Score=49.55  Aligned_cols=94  Identities=21%  Similarity=0.170  Sum_probs=56.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC---CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG---FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .++|.|.||||++|+.+++.|.+++   .++..+..+....+.... ........  ++.+      ..+.+ +|++|.+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~-~~~~~~~~--~~~~------~~~~~-~d~vf~a   71 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF-AESSLRVG--DVDS------FDFSS-VGLAFFA   71 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE-TTEEEECE--EGGG------CCGGG-CSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceee-ccccchhc--cchh------hhhcc-ceEEEec
Confidence            4789999999999999999997654   367766544332222111 11111111  1111      22455 9999988


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      ++.              ..+..+...+.+.|. ++|-.||..
T Consensus        72 ~p~--------------~~s~~~~~~~~~~g~-~VID~Ss~f   98 (144)
T d2hjsa1          72 AAA--------------EVSRAHAERARAAGC-SVIDLSGAL   98 (144)
T ss_dssp             SCH--------------HHHHHHHHHHHHTTC-EEEETTCTT
T ss_pred             CCc--------------chhhhhccccccCCc-eEEeechhh
Confidence            742              224556666666664 777777753

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.36  E-value=0.00042  Score=53.00  Aligned_cols=79  Identities=13%  Similarity=0.071  Sum_probs=52.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      .+.+|+|.|+ |++|...+..+...|. +|+++++++++.+.... ....-.+...|-.+..+...+...+ ++|++|.+
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~-~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-VGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH-hCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            3789999999 7899999999999985 88888888887665443 2222222223333322333333332 59999999


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      .|.
T Consensus       106 ~G~  108 (176)
T d2jhfa2         106 IGR  108 (176)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.35  E-value=0.00015  Score=55.31  Aligned_cols=79  Identities=15%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      .+.+|+|+|++|.+|..++..+...|. +|++..+++++.+.... .+.. ..+..+-.|..+.+.+...+ .+|++|.|
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~vid~  104 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-AGAD-YVINASMQDPLAEIRRITESKGVDAVIDL  104 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-HTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-cCCc-eeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence            367999999999999999999888885 88888888776655432 2222 23332222312444444333 59999999


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      +|.
T Consensus       105 ~g~  107 (170)
T d1jvba2         105 NNS  107 (170)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            874

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.35  E-value=0.00056  Score=51.19  Aligned_cols=110  Identities=16%  Similarity=0.054  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-------eEEEEEeCCch--hhhcc----ccCCCCeEEEEccCCCChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-------AVKAGVRDLDK--AKTTL----SKDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-------~V~~~~r~~~~--~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      .++|.|+||+|.+|++++-.|+..+.       .++..+.+...  .+.+.    .........+..  .   ....+.+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~---~~~~~~~   77 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIA--T---DKEEIAF   77 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEE--E---SCHHHHT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccccccccc--C---ccccccc
Confidence            57999999999999999999986542       34444433321  11111    001122222221  2   2245678


Q ss_pred             cCCCCEEEEccCCCC--CCCCCCceeeehHHHHHHHHHHHHc-CCC-EEEEec
Q 022216          133 GDDSEAVVCATGFQP--GWDLFAPWKVDNFGTVNLVEACRKR-GVN-RFILIS  181 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~-~~~-~iV~~S  181 (301)
                      ++ .|+||.++|...  .++....++.|..-...+.+...+. +.. .+|.+|
T Consensus        78 ~~-~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          78 KD-LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             TT-CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CC-ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence            88 999999999654  3456677889998889999888775 433 344444

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00044  Score=48.69  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=54.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      ...+|.|.|| |.+|+-++.+..+.|+++++++.+++.....     ..-.++.+|+.| .+.+.+.... .+|+|-.
T Consensus        10 ~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~~-----va~~~i~~~~~d-~~~l~~~~~~~~~DviT~   80 (111)
T d1kjqa2          10 AATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAMH-----VAHRSHVINMLD-GDALRRVVELEKPHYIVP   80 (111)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGGG-----GSSEEEECCTTC-HHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchhh-----cCCeEEECCCCC-HHHHHHHHHhhCCceEEE
Confidence            3578999996 9999999999999999999998876654322     223567899999 7877776542 3788853

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.32  E-value=0.00012  Score=56.17  Aligned_cols=100  Identities=11%  Similarity=0.022  Sum_probs=63.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      .+.+|+|.|+ |++|...++.+...|+ +|+++++++++.+.... .+. .+++..+-.+..+.+.+...+ .+|+||.|
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~-lGa-~~~i~~~~~~~~~~v~~~t~g~G~D~vid~  103 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF-YGA-TDILNYKNGHIEDQVMKLTNGKGVDRVIMA  103 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH-HTC-SEEECGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHh-hCc-cccccccchhHHHHHHHHhhccCcceEEEc
Confidence            4789999986 9999999998888897 78888888776554432 111 122222112213556666544 59999999


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      +|...             .....++.+++.  ++++.++-
T Consensus       104 ~g~~~-------------~~~~a~~~~~~~--G~iv~~G~  128 (174)
T d1jqba2         104 GGGSE-------------TLSQAVKMVKPG--GIISNINY  128 (174)
T ss_dssp             SSCTT-------------HHHHHHHHEEEE--EEEEECCC
T ss_pred             cCCHH-------------HHHHHHHHHhcC--CEEEEEee
Confidence            98431             123334455443  57888764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.26  E-value=0.00016  Score=54.81  Aligned_cols=65  Identities=15%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |+|.|.|. |.+|..+++.|.++|++|++.+|+++..++.....  .+...    .+    ..+.+++ .|+||-+.
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~--~~~~~----~~----~~~~~~~-~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ--LVDEA----GQ----DLSLLQT-AKIIFLCT   65 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT--SCSEE----ES----CGGGGTT-CSEEEECS
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh--cccee----ee----ecccccc-cccccccC
Confidence            67999987 99999999999999999999999877666544311  11111    11    1235567 99999765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.24  E-value=0.00046  Score=52.89  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=53.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~  142 (301)
                      .+.+|+|+|+ |++|...+..+...|. +|+++++++++++..+. ......+-.-|-.+..+.+.+...+ .+|++|.+
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~-~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-VGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-HTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh-cCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            3789999987 9999999999999995 89999999888775443 2222222122322212334443432 59999999


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      .|.
T Consensus       107 ~g~  109 (176)
T d1d1ta2         107 IGH  109 (176)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            874

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.20  E-value=0.0023  Score=47.18  Aligned_cols=94  Identities=15%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC----CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG----FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      |+|.|.||||++|+.+++.|+++.    .++..+..+....+ ... ...... ...+..+     .+.+++ +|+||.|
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk-~~~-~~~~~~-~~~~~~~-----~~~~~~-~DvvF~a   71 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP-APN-FGKDAG-MLHDAFD-----IESLKQ-LDAVITC   71 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB-CCC-SSSCCC-BCEETTC-----HHHHTT-CSEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc-ccc-cCCcce-eeecccc-----hhhhcc-ccEEEEe
Confidence            679999999999999999988753    35555443322111 110 111110 1111222     234577 9999998


Q ss_pred             cCCCCCCCCCCceeeehHHHHHHHHHHHHcCCC-EEEEeccc
Q 022216          143 TGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN-RFILISSI  183 (301)
Q Consensus       143 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS~  183 (301)
                      .+-              .-+..+...+.+.|.+ .+|=.|+.
T Consensus        72 lp~--------------~~s~~~~~~l~~~g~~~~VIDlSsd   99 (147)
T d1mb4a1          72 QGG--------------SYTEKVYPALRQAGWKGYWIDAAST   99 (147)
T ss_dssp             SCH--------------HHHHHHHHHHHHTTCCSEEEESSST
T ss_pred             cCc--------------hHHHHHhHHHHHcCCceEEEeCCcc
Confidence            741              1256677777777764 35556664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.09  E-value=0.00069  Score=51.16  Aligned_cols=74  Identities=20%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcCCCCEEEEc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+|+|.|+ |.+|...++.+...|++|+++++++++++.... .... .++  |.++  ..+.+.+...+ .+.+|.+
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~-~Ga~-~~i--~~~~~~~~~~~~~~~~g-~~~~i~~  100 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELARK-LGAS-LTV--NARQEDPVEAIQRDIGG-AHGVLVT  100 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCS-EEE--ETTTSCHHHHHHHHHSS-EEEEEEC
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhhc-cCcc-ccc--cccchhHHHHHHHhhcC-Ccccccc
Confidence            3789999986 999999999888899999999998877665443 2221 223  3333  12445555555 6766666


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      ++
T Consensus       101 ~~  102 (166)
T d1llua2         101 AV  102 (166)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.09  E-value=0.00094  Score=50.95  Aligned_cols=78  Identities=13%  Similarity=0.035  Sum_probs=51.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC-ChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|+|.|+ |++|...++.+...|+ +|+++++++++++.... ... -.++...-.| ..+.+.+...+ .+|++|.
T Consensus        27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-lGa-~~~i~~~~~d~~~~~~~~~~~~~G~d~vid  103 (174)
T d1p0fa2          27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-LGA-TECLNPKDYDKPIYEVICEKTNGGVDYAVE  103 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-TTC-SEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-cCC-cEEEcCCCchhHHHHHHHHhcCCCCcEEEE
Confidence            3789999996 9999999999999996 78888888877765443 221 2222211112 12333333332 5999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      ++|.
T Consensus       104 ~~g~  107 (174)
T d1p0fa2         104 CAGR  107 (174)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            9874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.05  E-value=0.0005  Score=52.50  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=49.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEE-EEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVK-AGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .+.+|+|.|+ |++|...+..+...|++++ +.++++++++.... .. -.+++..+-.|..+.+.+...+++|+||.|.
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~-~G-a~~~i~~~~~~~~~~i~~~t~gg~D~vid~~  104 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-LG-ATHVINSKTQDPVAAIKEITDGGVNFALEST  104 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-HT-CSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHH-cC-CeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence            3789999997 9999999988888898655 44556655554332 11 1233322222212444454444699999998


Q ss_pred             CC
Q 022216          144 GF  145 (301)
Q Consensus       144 g~  145 (301)
                      |.
T Consensus       105 G~  106 (174)
T d1f8fa2         105 GS  106 (174)
T ss_dssp             CC
T ss_pred             Cc
Confidence            74

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.03  E-value=0.0007  Score=48.92  Aligned_cols=70  Identities=21%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |.++|.|. |-+|..+++.|  +|++|+++..+++..+....   .++.++.+|.++ ++.+.++-=++.+.+|-+.
T Consensus         1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~---~~~~~i~Gd~~~-~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKKVLR---SGANFVHGDPTR-VSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHHHHH---TTCEEEESCTTS-HHHHHHTTCTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHHHHh---cCccccccccCC-HHHHHHhhhhcCcEEEEec
Confidence            56899997 88999999998  46778888888877665543   578999999999 7777765322488888755

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.01  E-value=0.0013  Score=49.49  Aligned_cols=79  Identities=14%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ..-+|+|.|+ |-.|..-++.+...|++|.+++.+.+.++++.......++...   .+ .+.+.+.+.+ .|+||.++-
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~---~~-~~~l~~~~~~-aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLY---SN-SAEIETAVAE-ADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEE---CC-HHHHHHHHHT-CSEEEECCC
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeeh---hh-hhhHHHhhcc-CcEEEEeee
Confidence            3579999998 9999999999999999999999998888765543334444433   45 6788999999 999999986


Q ss_pred             CCCCC
Q 022216          145 FQPGW  149 (301)
Q Consensus       145 ~~~~~  149 (301)
                      +....
T Consensus       105 ipG~~  109 (168)
T d1pjca1         105 VPGRR  109 (168)
T ss_dssp             CTTSS
T ss_pred             cCCcc
Confidence            65443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.97  E-value=0.0012  Score=50.28  Aligned_cols=78  Identities=13%  Similarity=0.066  Sum_probs=47.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEc-cCCCChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKA-DVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|+|.|+ |++|...++.+...|. .|++.++++++.+..+. ....- ++.. +-.+......+...+ .+|+||.
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~-lGa~~-~i~~~~~~~~~~~~~~~~~~~g~D~vid  104 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE-FGATE-CINPQDFSKPIQEVLIEMTDGGVDYSFE  104 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-HTCSE-EECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH-hCCcE-EEeCCchhhHHHHHHHHHcCCCCcEeee
Confidence            3789999998 7899999999988996 56666666666543332 22221 2221 111212223333222 5999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      +.|.
T Consensus       105 ~~G~  108 (176)
T d2fzwa2         105 CIGN  108 (176)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            9873

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.94  E-value=0.00035  Score=53.14  Aligned_cols=42  Identities=26%  Similarity=0.447  Sum_probs=36.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTL  107 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~  107 (301)
                      ++++|+|.|+ ||.+++++..|.+.|. +|.++.|+.++.+.+.
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~   58 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA   58 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHH
Confidence            5789999997 9999999999999996 7999999988776654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.87  E-value=0.0024  Score=48.62  Aligned_cols=78  Identities=10%  Similarity=0.012  Sum_probs=49.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC-ChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|+|.|+ |+||...+..+...|+ +|++.++++++++.... ... -.++...-.| ....+.+...+ .+|++|.
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~-~Ga-~~~i~~~~~~~~~~~~~~~~~~~G~d~vie  104 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-LGA-TDCLNPRELDKPVQDVITELTAGGVDYSLD  104 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTC-SEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH-hCC-CcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence            3789999986 9999999999999998 57777777766544332 221 2223222222 12333333322 5999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      |+|.
T Consensus       105 ~~G~  108 (174)
T d1e3ia2         105 CAGT  108 (174)
T ss_dssp             SSCC
T ss_pred             eccc
Confidence            9984

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0044  Score=49.78  Aligned_cols=109  Identities=19%  Similarity=0.263  Sum_probs=66.2

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------cccCCCCeEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSKDNPSLQIVKA  119 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~  119 (301)
                      .+++.+|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                      +....+.+.+...
T Consensus        27 kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~  105 (247)
T d1jw9b_          27 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  105 (247)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhh
Confidence            467899999996 9999999999999997 677766543211110                      0001233333333


Q ss_pred             cCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc
Q 022216          120 DVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (301)
Q Consensus       120 Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~  187 (301)
                      +.....+.....+.. .|+||.+..             |...-..+-+++.+.++ .+|+.+....+|
T Consensus       106 ~~~~~~~~~~~~~~~-~divid~~d-------------~~~~~~~in~~~~~~~i-p~i~g~~~~~~g  158 (247)
T d1jw9b_         106 NALLDDAELAALIAE-HDLVLDCTD-------------NVAVRNQLNAGCFAAKV-PLVSGAAIRMEG  158 (247)
T ss_dssp             CSCCCHHHHHHHHHT-SSEEEECCS-------------SHHHHHHHHHHHHHHTC-CEEEEEEEBTEE
T ss_pred             hhhhhhccccccccc-cceeeeccc-------------hhhhhhhHHHHHHHhCC-Cccccccccccc
Confidence            332213555566667 888887652             34445567777778775 466654444333

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.82  E-value=0.00062  Score=51.34  Aligned_cols=66  Identities=15%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      +++|.|.|- |.+|+.+++.|+++|++|.+.+|++++.+.+...   +.       .. .....+.+.. .|+|+-+..
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~---~~-------~~-~~~~~e~~~~-~diii~~v~   66 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA---GA-------SA-ARSARDAVQG-ADVVISMLP   66 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TC-------EE-CSSHHHHHTS-CSEEEECCS
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhh---hc-------cc-cchhhhhccc-cCeeeeccc
Confidence            467999985 9999999999999999999999998776655431   11       01 1235667777 999988763

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.82  E-value=0.003  Score=48.22  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=26.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CeEEEE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAG   96 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~   96 (301)
                      |++|.|.||||+.|+++++.|.++. .++..+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l   32 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL   32 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence            4789999999999999999999984 566655

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.79  E-value=0.0013  Score=49.92  Aligned_cols=76  Identities=17%  Similarity=0.087  Sum_probs=49.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCC-hHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEG-SAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|+|.|+ |++|...+..+...|. .|++.++++++++.... .. ..+++  |..++ .+.+.+...+ ++|+||.
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-~g-a~~~i--~~~~~~~~~~~~~~~~~g~d~vid  106 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-LG-ADHVV--DARRDPVKQVMELTRGRGVNVAMD  106 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-TT-CSEEE--ETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-cc-cceee--cCcccHHHHHHHhhCCCCceEEEE
Confidence            3689999986 9999999988888886 66666777766655443 22 22333  33331 2334444433 5999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      ++|.
T Consensus       107 ~~g~  110 (172)
T d1h2ba2         107 FVGS  110 (172)
T ss_dssp             SSCC
T ss_pred             ecCc
Confidence            9974

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.72  E-value=0.00051  Score=51.75  Aligned_cols=64  Identities=14%  Similarity=0.282  Sum_probs=49.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |+|-|.|- |.+|+.+++.|+++|++|++.+|++++.+++..   .....     .   ++..+...+ .|+||-|.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~---~~~~~-----~---~~~~e~~~~-~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA---AGAET-----A---STAKAIAEQ-CDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---TTCEE-----C---SSHHHHHHH-CSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH---hhhhh-----c---ccHHHHHhC-CCeEEEEc
Confidence            57899986 999999999999999999999999888776653   12211     1   234556667 99999876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.72  E-value=0.0013  Score=49.61  Aligned_cols=75  Identities=19%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCC-CChHhHHHHhcCCCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVT-EGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      .+.+|+|.|+ |.+|...+..+...|++|+++++++++.+....   -+...+...-. |..+.+.+...+ .|.+|.++
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~---~Ga~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  101 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE---LGADLVVNPLKEDAAKFMKEKVGG-VHAAVVTA  101 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---TTCSEEECTTTSCHHHHHHHHHSS-EEEEEESS
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh---cCcceecccccchhhhhcccccCC-CceEEeec
Confidence            3689999976 999999999999999999999988887765543   23333322222 213455666666 77777776


Q ss_pred             C
Q 022216          144 G  144 (301)
Q Consensus       144 g  144 (301)
                      +
T Consensus       102 ~  102 (168)
T d1rjwa2         102 V  102 (168)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.72  E-value=0.00017  Score=56.10  Aligned_cols=76  Identities=17%  Similarity=0.171  Sum_probs=52.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc-----CCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK-----DNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      +.+++|.|.|+ |-.|.+++..|++.|++|.+..|+++..+++...     ..+++.. .-++.- ...+.+++++ .|+
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l-~~~i~~-t~~l~~a~~~-ad~   80 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL-ASNITF-TSDVEKAYNG-AEI   80 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBC-CTTEEE-ESCHHHHHTT-CSC
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccc-cccccc-chhhhhccCC-CCE
Confidence            45678999998 9999999999999999999999987765543221     1112111 111111 2347778888 999


Q ss_pred             EEEcc
Q 022216          139 VVCAT  143 (301)
Q Consensus       139 Vi~~A  143 (301)
                      ||.+.
T Consensus        81 iiiav   85 (189)
T d1n1ea2          81 ILFVI   85 (189)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            98865

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.71  E-value=0.0025  Score=48.79  Aligned_cols=64  Identities=28%  Similarity=0.372  Sum_probs=49.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+|+|.|.|. |.||+.+++.|..-|.+|++.+|.+....                ..- .+++++.+.. .|+|+.+
T Consensus        39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~~----------------~~~-~~~l~ell~~-sDiv~~~   99 (181)
T d1qp8a1          39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEGP----------------WRF-TNSLEEALRE-ARAAVCA   99 (181)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCSS----------------SCC-BSCSHHHHTT-CSEEEEC
T ss_pred             cccCceEEEecc-ccccccceeeeeccccccccccccccccc----------------eee-eechhhhhhc-cchhhcc
Confidence            357999999997 99999999999999999999887654211                111 2347788889 9999887


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      ...
T Consensus       100 ~pl  102 (181)
T d1qp8a1         100 LPL  102 (181)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.70  E-value=0.0013  Score=51.06  Aligned_cols=77  Identities=19%  Similarity=0.309  Sum_probs=52.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCC--ChHhHHHHhcC-CCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE--GSAKLSEAIGD-DSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~d~Vi  140 (301)
                      .+.+|||.|+ |.+|...+..+...|. +|++.++++++++....   -+...+. |-.+  ..+.+.+...+ .+|++|
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~---~Ga~~~~-~~~~~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA---QGFEIAD-LSLDTPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---TTCEEEE-TTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhh---ccccEEE-eCCCcCHHHHHHHHhCCCCcEEEE
Confidence            4789999986 9999988888877886 78887887777655433   2333332 2222  12455555554 599999


Q ss_pred             EccCCC
Q 022216          141 CATGFQ  146 (301)
Q Consensus       141 ~~Ag~~  146 (301)
                      .+.|..
T Consensus       100 d~vG~~  105 (195)
T d1kola2         100 DAVGFE  105 (195)
T ss_dssp             ECCCTT
T ss_pred             ECcccc
Confidence            999854

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.69  E-value=6.6e-05  Score=57.88  Aligned_cols=43  Identities=26%  Similarity=0.409  Sum_probs=36.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~  107 (301)
                      ++++|+|+|.|+ |+.+++++-+|.+.| +|++..|+.++.+++.
T Consensus        15 ~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~   57 (177)
T d1nvta1          15 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALA   57 (177)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHH
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHH
Confidence            467999999997 999999999998777 8999999988766543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.68  E-value=0.0015  Score=47.41  Aligned_cols=37  Identities=14%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      .+++++|.|| |++|.+++..|.+.|.+|.++.+.+.-
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecccc
Confidence            4689999998 999999999999999999999887654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.67  E-value=0.0027  Score=48.57  Aligned_cols=99  Identities=16%  Similarity=0.223  Sum_probs=60.7

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch--hhhcccc---CCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK--AKTTLSK---DNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~--~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      |+|.|.|+ |..|.+++..|+++|++|.+..|..+.  .+.....   .......-..++.- .+++.+++.+ .|+||.
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~-ad~Ii~   77 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW-PEQLEKCLEN-AEVVLL   77 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEEC-GGGHHHHHTT-CSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccc-cccHHHHHhc-cchhhc
Confidence            68999998 999999999999999999998885443  2222110   00011111111211 3567888888 999998


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEecc
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRG-VNRFILISS  182 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iV~~SS  182 (301)
                      +..              ..+...+++.++..- -+.+|..+.
T Consensus        78 avp--------------s~~~~~~~~~l~~~l~~~~ii~~tk  105 (180)
T d1txga2          78 GVS--------------TDGVLPVMSRILPYLKDQYIVLISK  105 (180)
T ss_dssp             CSC--------------GGGHHHHHHHHTTTCCSCEEEECCC
T ss_pred             ccc--------------hhhhHHHHHhhccccccceeccccc
Confidence            652              233566666665542 234444433

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.62  E-value=0.0019  Score=50.36  Aligned_cols=69  Identities=12%  Similarity=0.188  Sum_probs=49.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      ++++++|+|-|- |.+|+++++.|.+.|.+|++.+.+.........   .+.+.+     + .+   +.+..++|+++-|
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~---~g~~~~-----~-~~---~~~~~~~DI~iPc   90 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHAVA---LGHTAV-----A-LE---DVLSTPCDVFAPC   90 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---TTCEEC-----C-GG---GGGGCCCSEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHHHh---hccccc-----C-cc---ccccccceeeecc
Confidence            578999999995 999999999999999999988777665544322   122221     2 22   2344359999998


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      |.
T Consensus        91 A~   92 (201)
T d1c1da1          91 AM   92 (201)
T ss_dssp             SC
T ss_pred             cc
Confidence            74

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0015  Score=49.83  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRD   99 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~   99 (301)
                      +++|.|.||||++|+.+++.|.++. .++..+..+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~   35 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR   35 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeecc
Confidence            4689999999999999999999875 466666433

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.56  E-value=0.0035  Score=46.39  Aligned_cols=64  Identities=16%  Similarity=0.265  Sum_probs=46.3

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |+|-|.|. |.+|+.+++.|+++|++|++.+|+..+.......   +.     .+.   ++..+++.+ .|+||-+.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~---~~-----~~~---~~~~e~~~~-~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR---TV-----GVT---ETSEEDVYS-CPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---HH-----TCE---ECCHHHHHT-SSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh---cc-----ccc---ccHHHHHhh-cCeEEEEe
Confidence            57889975 9999999999999999999888777665544321   11     111   123456777 99999876

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.53  E-value=0.0029  Score=47.12  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=51.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC---eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      -+|.|.||||++|.++++.|.++.+   ++..+..+ +...+.......  .....+..+      ..+.+ .|+++.++
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s~G~~~~~~~~--~~~~~~~~~------~~~~~-~d~~f~~~   71 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGKSLKFKDQ--DITIEETTE------TAFEG-VDIALFSA   71 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GGTTCEEEETTE--EEEEEECCT------TTTTT-CSEEEECS
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-ccccccccccCC--cccccccch------hhhhh-hhhhhhcc
Confidence            4799999999999999999988854   33333322 111111110111  111122222      12345 88888877


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      +.              ..+..+...+.+.++ ++|=.|+..
T Consensus        72 ~~--------------~~s~~~~~~~~~~~~-~VIDlSsdf   97 (154)
T d2gz1a1          72 GS--------------STSAKYAPYAVKAGV-VVVDNTSYF   97 (154)
T ss_dssp             CH--------------HHHHHHHHHHHHTTC-EEEECSSTT
T ss_pred             Cc--------------cchhhHHhhhccccc-eehhcChhh
Confidence            42              224455555555564 677777753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.003  Score=42.97  Aligned_cols=71  Identities=21%  Similarity=0.351  Sum_probs=50.1

Q ss_pred             cCCeEEEEcCCchHH-HHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           65 KQKKIFVAGATGSSG-KRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        65 ~~~~vlVtGatG~iG-~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      +.|+|.+.|- |++| +++|+.|+++|++|.+.++.....-+.+.  ..++.+..++-.+       .+.+ .|.||...
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~--~~Gi~v~~g~~~~-------~i~~-~d~vV~S~   75 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLA--QAGAKIYIGHAEE-------HIEG-ASVVVVSS   75 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHH--HTTCEEEESCCGG-------GGTT-CSEEEECT
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHH--HCCCeEEECCccc-------cCCC-CCEEEECC
Confidence            4689999997 7777 77899999999999999987654433332  2456555543322       2356 89999888


Q ss_pred             CCC
Q 022216          144 GFQ  146 (301)
Q Consensus       144 g~~  146 (301)
                      ++.
T Consensus        76 AI~   78 (96)
T d1p3da1          76 AIK   78 (96)
T ss_dssp             TSC
T ss_pred             CcC
Confidence            765

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.0032  Score=42.15  Aligned_cols=83  Identities=16%  Similarity=0.190  Sum_probs=55.6

Q ss_pred             CeEEEEcCCchHH-HHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccCC
Q 022216           67 KKIFVAGATGSSG-KRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATGF  145 (301)
Q Consensus        67 ~~vlVtGatG~iG-~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~  145 (301)
                      |+|-+.|- ||+| +.+|+.|+++|+.|.+.++.....-+.+.  ..++.+..+.-.   +.    +.+ .|.||...++
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~--~~Gi~i~~gh~~---~~----i~~-~d~vV~SsAI   70 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERTAYLR--KLGIPIFVPHSA---DN----WYD-PDLVIKTPAV   70 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH--HTTCCEESSCCT---TS----CCC-CSEEEECTTC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHH--HCCCeEEeeecc---cc----cCC-CCEEEEecCc
Confidence            67888886 7778 58999999999999999988755443332  234555443221   11    256 9999998877


Q ss_pred             CCCCCCCCceeeehHHHHHHHHHHHHcCC
Q 022216          146 QPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       146 ~~~~~~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      ..+         |.     -+++|++.|+
T Consensus        71 ~~~---------np-----el~~A~~~gI   85 (89)
T d1j6ua1          71 RDD---------NP-----EIVRARMERV   85 (89)
T ss_dssp             CTT---------CH-----HHHHHHHTTC
T ss_pred             CCC---------CH-----HHHHHHHcCC
Confidence            532         11     3677777765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.016  Score=41.46  Aligned_cols=30  Identities=23%  Similarity=0.314  Sum_probs=27.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAG   96 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~   96 (301)
                      |+|.|.|++|-.|+.+++.+.+.|+++++.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~   30 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK   30 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence            579999999999999999999999988764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.46  E-value=0.0012  Score=49.10  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=48.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |+|.+.|+ |-+|+++++.|++.|++|++..|+.++.+++....+  +.     ..   .+..+..++ .|+||-+.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g--~~-----~~---~~~~~~~~~-~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLA--LP-----YA---MSHQDLIDQ-VDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHT--CC-----BC---SSHHHHHHT-CSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccc--ee-----ee---chhhhhhhc-cceeeeec
Confidence            57889986 999999999999999999999998887766543221  11     11   124555667 99999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.45  E-value=0.003  Score=44.94  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=33.8

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA  103 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~  103 (301)
                      ++++++|.|| |++|.++|..|.+.|.+|+++.+.+.-+
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccccc
Confidence            3689999998 9999999999999999999998876543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.44  E-value=0.0031  Score=45.01  Aligned_cols=37  Identities=19%  Similarity=0.120  Sum_probs=32.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      ++++|+|.|| |++|.+++..|.+.|.+|+++.+.+.-
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4689999997 999999999999999999999887543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0027  Score=47.46  Aligned_cols=71  Identities=25%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.||++.|.|- |.||+.+|+.|...|.+|++..++|.+.-+...   .+..         ...+.+++.. .|+||-
T Consensus        20 ~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~---dG~~---------v~~~~~a~~~-adivvt   85 (163)
T d1li4a1          20 VMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPINALQAAM---EGYE---------VTTMDEACQE-GNIFVT   85 (163)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---TTCE---------ECCHHHHTTT-CSEEEE
T ss_pred             ceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccchhHHhhc---CceE---------eeehhhhhhh-ccEEEe
Confidence            4567999999995 999999999999999999999887754333221   1111         1235666777 899988


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +.|..
T Consensus        86 aTGn~   90 (163)
T d1li4a1          86 TTGCI   90 (163)
T ss_dssp             CSSCS
T ss_pred             cCCCc
Confidence            87743

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.43  E-value=0.0036  Score=47.55  Aligned_cols=73  Identities=15%  Similarity=0.266  Sum_probs=54.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      ..+|-|.|- |.+|..+++.|+++|++|++.+|++++.+++............  ... .+.+.+.+.. .|.++-+.
T Consensus         2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~--a~~-~~~~~~~~~~-~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLG--AHS-LEEMVSKLKK-PRRIILLV   74 (176)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEE--CSS-HHHHHHHBCS-SCEEEECS
T ss_pred             CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccc--hhh-hhhhhhhhcc-cceEEEec
Confidence            357899997 9999999999999999999999999888776542211111111  223 5667777888 89998875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.0014  Score=48.63  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=33.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      ..+++|+|||+|| |.+|..-++.|++.|++|+++.-.
T Consensus         9 ~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             ECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4568999999998 999999999999999999998643

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.37  E-value=0.00072  Score=52.32  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             CCeEEE-EcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc---ccCCCCeEEEE--ccCCCChHhHHHHh---cCCC
Q 022216           66 QKKIFV-AGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL---SKDNPSLQIVK--ADVTEGSAKLSEAI---GDDS  136 (301)
Q Consensus        66 ~~~vlV-tGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~--~Dl~~~~~~~~~~~---~~~~  136 (301)
                      +.+++| +||+|++|...++-....|++|+++.|+.++.++..   .+.+....+..  .|..+..+.+.+..   .+++
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~v  108 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA  108 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCCc
Confidence            556666 699999999999888888999999998876654322   11121221111  12222112333332   2249


Q ss_pred             CEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          137 EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       137 d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      |+|+++.|..              .....++.++..  +++|.++..
T Consensus       109 dvv~D~vg~~--------------~~~~~~~~l~~~--G~~v~~G~~  139 (189)
T d1gu7a2         109 KLALNCVGGK--------------SSTGIARKLNNN--GLMLTYGGM  139 (189)
T ss_dssp             EEEEESSCHH--------------HHHHHHHTSCTT--CEEEECCCC
T ss_pred             eEEEECCCcc--------------hhhhhhhhhcCC--cEEEEECCc
Confidence            9999987621              123344444333  589987765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.36  E-value=0.003  Score=44.50  Aligned_cols=36  Identities=19%  Similarity=0.124  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      .++++|.|| |++|.++|..|.+.|.+|+++.|.+.-
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEeccee
Confidence            589999998 999999999999999999999887653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.31  E-value=0.0015  Score=48.48  Aligned_cols=64  Identities=13%  Similarity=0.304  Sum_probs=46.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |+|.+.|+ |.+|.++++.|++.| ++|++.+|++++.+.+..+.  ++... .|.    +    .+.+ .|+||-+.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~--~~~~~-~~~----~----~v~~-~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL--GVETS-ATL----P----ELHS-DDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT--CCEEE-SSC----C----CCCT-TSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc--ccccc-ccc----c----cccc-cceEEEec
Confidence            57899987 999999999999887 89999999988877665322  23222 111    1    1355 89998764

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.27  E-value=0.021  Score=40.84  Aligned_cols=89  Identities=15%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             cCCeEEEEcCC---chHHHHHHHHHHHCC-CeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           65 KQKKIFVAGAT---GSSGKRIVEQLLAKG-FAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGat---G~iG~~~~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      +.++|.|.|+|   +..|..+.+.|.+.| .+|+.+..+.+..        .++.. .-++.|       .-.. +|.++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i--------~G~~~-y~sl~d-------lp~~-vDlvv   69 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV--------QGVKA-YKSVKD-------IPDE-IDLAI   69 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE--------TTEEC-BSSTTS-------CSSC-CSEEE
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc--------CCeEe-ecchhh-------cCCC-CceEE
Confidence            57899999999   999999999988766 5888764332221        12221 223443       2234 99998


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                      .+..              -..+..+++.+.+.|++.++.+|+..
T Consensus        70 i~vp--------------~~~~~~~~~~~~~~g~~~~vi~s~Gf   99 (129)
T d2csua1          70 IVVP--------------KRFVKDTLIQCGEKGVKGVVIITAGF   99 (129)
T ss_dssp             ECSC--------------HHHHHHHHHHHHHHTCCEEEECCCSS
T ss_pred             EecC--------------hHHhHHHHHHHHHcCCCEEEEecccc
Confidence            7652              23356788888888998888888863

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.24  E-value=0.002  Score=50.00  Aligned_cols=39  Identities=26%  Similarity=0.078  Sum_probs=32.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL  107 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~  107 (301)
                      |+|.|.| .|++|..++..| +.|++|++.+.++...+.+.
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHHHHHh
Confidence            6789997 599999999766 56999999998877766554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.002  Score=49.96  Aligned_cols=38  Identities=26%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAK  104 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~  104 (301)
                      -++|.|.|+ |.+|+.++..++.+|++|++.+++++.++
T Consensus         4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            479999998 99999999999999999999999886544

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.16  E-value=0.0031  Score=47.52  Aligned_cols=41  Identities=15%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCCchhhhcc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDLDKAKTTL  107 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~~~~~~~~  107 (301)
                      +|+|+|.|. |.+|..+++.|.+.|+  +|++.+|+++..+...
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~   43 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV   43 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH
Confidence            467999986 9999999999999996  6787788877666544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.15  E-value=0.0091  Score=45.32  Aligned_cols=83  Identities=10%  Similarity=0.092  Sum_probs=57.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEE-----------------EccCCC-ChHh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIV-----------------KADVTE-GSAK  127 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-----------------~~Dl~~-~~~~  127 (301)
                      .-+|+|.|| |-.|..-++.....|++|.+++.+++.++++.......++..                 .-+... ..+.
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            458999998 999999999999999999999999988776553111111100                 001111 0356


Q ss_pred             HHHHhcCCCCEEEEccCCCCCCC
Q 022216          128 LSEAIGDDSEAVVCATGFQPGWD  150 (301)
Q Consensus       128 ~~~~~~~~~d~Vi~~Ag~~~~~~  150 (301)
                      +.+.+.+ .|+||-++-+.....
T Consensus       108 l~~~l~~-aDlVI~talipG~~a  129 (183)
T d1l7da1         108 VLKELVK-TDIAITTALIPGKPA  129 (183)
T ss_dssp             HHHHHTT-CSEEEECCCCTTSCC
T ss_pred             HHHHHHh-hhhheeeeecCCccc
Confidence            7777888 999999886654433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0044  Score=43.60  Aligned_cols=36  Identities=17%  Similarity=0.055  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      .++++|.|| |++|.+++..|.+.|.+|+++.|.+.-
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecchh
Confidence            478999998 999999999999999999999887543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.08  E-value=0.0053  Score=43.43  Aligned_cols=35  Identities=23%  Similarity=0.078  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      +++++|.|| |+||-++|..|.+.|.+|+++.|...
T Consensus        22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence            589999998 99999999999999999999987754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.07  E-value=0.011  Score=44.56  Aligned_cols=78  Identities=17%  Similarity=0.109  Sum_probs=49.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEc-cCCCChHhHHHHhcC-CCCEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKA-DVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .+.+|+|.|+ |++|...+..+...|. +|+++++++++++.... .+. -+++.. +-.+..+.+.+...+ ++|++|.
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~GA-d~~in~~~~~~~~~~~~~~~~~~G~d~vid  104 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FGA-TDFVNPNDHSEPISQVLSKMTNGGVDFSLE  104 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTC-CEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH-cCC-cEEEcCCCcchhHHHHHHhhccCCcceeee
Confidence            3789999997 7788888888888875 68888888877765443 221 122221 211212334444322 5999999


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      +.|.
T Consensus       105 ~~G~  108 (175)
T d1cdoa2         105 CVGN  108 (175)
T ss_dssp             CSCC
T ss_pred             ecCC
Confidence            9874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0043  Score=44.12  Aligned_cols=36  Identities=17%  Similarity=0.120  Sum_probs=32.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      .++++|.|| |+||.+++..|.+.|.+|+++.|.+.-
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecccc
Confidence            579999998 999999999999999999999887643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.04  E-value=0.0049  Score=47.61  Aligned_cols=69  Identities=17%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.+|++.|.|. |.||+.+++.|..-|.+|++.++.........           .++.. .+++.+.++. .|+|+.
T Consensus        45 ~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~~~~~-~~~l~~ll~~-sD~i~~  110 (193)
T d1mx3a1          45 ARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDGVERA-----------LGLQR-VSTLQDLLFH-SDCVTL  110 (193)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH-----------HTCEE-CSSHHHHHHH-CSEEEE
T ss_pred             eeeeCceEEEecc-ccccccceeeeeccccceeeccCcccccchhh-----------hcccc-ccchhhcccc-CCEEEE
Confidence            3467999999997 99999999999999999998877644322111           01111 2356777777 888876


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      +..
T Consensus       111 ~~p  113 (193)
T d1mx3a1         111 HCG  113 (193)
T ss_dssp             CCC
T ss_pred             eec
Confidence            654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.03  E-value=0.0042  Score=43.84  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .++|+|.|| |++|-++|..|.+.|.+|+++.|...
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence            579999998 99999999999999999999988653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.01  E-value=0.0061  Score=47.24  Aligned_cols=66  Identities=12%  Similarity=0.059  Sum_probs=48.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+++|.|.|- |.||+.+++.|..-|.+|++.++.........             ... .+++.+.++. .|+|+.+
T Consensus        40 el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~-------------~~~-~~~l~~~l~~-sDii~~~  103 (197)
T d1j4aa1          40 EVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELEKK-------------GYY-VDSLDDLYKQ-ADVISLH  103 (197)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHT-------------TCB-CSCHHHHHHH-CSEEEEC
T ss_pred             cccCCeEEEecc-cccchhHHHhHhhhcccccccCcccccccccc-------------eee-eccccccccc-ccccccc
Confidence            467999999996 99999999999999999998776544322110             111 2347777888 8988776


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      ..
T Consensus       104 ~p  105 (197)
T d1j4aa1         104 VP  105 (197)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0051  Score=43.88  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .|+++|.|| |+||.+++..|.+.|.+|+++.|.+.
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence            579999998 99999999999999999999988754

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0056  Score=46.20  Aligned_cols=84  Identities=17%  Similarity=0.053  Sum_probs=54.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC-ChHhHHHHhcCCCCEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~d~Vi  140 (301)
                      .+++||+|+|.|-+.-+|+-++..|+++|++|+....+......... .-.-......|+.. ..+.+.+.... .|+||
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lk~~~~~-aDIvI  102 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGE-SLKLNKHHVEDLGEYSEDLLKKCSLD-SDVVI  102 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCC-CSSCCCCEEEEEEECCHHHHHHHHHH-CSEEE
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccccccccc-ceeeeeeccccccccchhHHhhcccc-CCEEE
Confidence            36789999999999999999999999999999876543211100000 00001111222211 14667787778 99999


Q ss_pred             EccCCCC
Q 022216          141 CATGFQP  147 (301)
Q Consensus       141 ~~Ag~~~  147 (301)
                      ..+|...
T Consensus       103 savG~p~  109 (171)
T d1edza1         103 TGVPSEN  109 (171)
T ss_dssp             ECCCCTT
T ss_pred             EccCCCc
Confidence            9988643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.95  E-value=0.0045  Score=44.00  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      +++++|.|| |++|.++|..|.+.|.+|+++.|.+.
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence            589999998 99999999999999999999887653

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.94  E-value=0.0017  Score=49.88  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=27.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGV   97 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~   97 (301)
                      +..+|.|.||||+.|+.+++.|.++.+ ++..+.
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            456899999999999999999998864 666554

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.92  E-value=0.0049  Score=43.81  Aligned_cols=33  Identities=27%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      .++++|.|| |+||.++|..|.+.|.+|+++.|+
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            578999998 999999999999999999999865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.85  E-value=0.0048  Score=43.33  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      +++++|.|| |++|.++|..|.+.|.+|+++.|.+.
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence            578999998 99999999999999999999887654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.84  E-value=0.0057  Score=48.64  Aligned_cols=35  Identities=37%  Similarity=0.515  Sum_probs=31.9

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      +.|+|+|.|| |..|..+|..|+++|++|.++.|..
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3578999998 9999999999999999999999864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.78  E-value=0.007  Score=44.97  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.||+++|.|- |.+|+.+|++|...|.+|++.-++|-..-+...   .+..+         ..+.++++. .|++|-
T Consensus        19 ~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~m---dGf~v---------~~~~~a~~~-aDi~vT   84 (163)
T d1v8ba1          19 FLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAVM---EGFNV---------VTLDEIVDK-GDFFIT   84 (163)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT---TTCEE---------CCHHHHTTT-CSEEEE
T ss_pred             ceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhhHHHHh---cCCcc---------CchhHcccc-CcEEEE
Confidence            4568999999997 999999999999999999998887755433221   23322         225567777 899988


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +.|-.
T Consensus        85 aTGn~   89 (163)
T d1v8ba1          85 CTGNV   89 (163)
T ss_dssp             CCSSS
T ss_pred             cCCCC
Confidence            87743

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0093  Score=44.57  Aligned_cols=59  Identities=19%  Similarity=0.271  Sum_probs=45.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.||+|+|.|-+.-+|+-++..|.++|++|++.....                         ..+.+..++ .|+||.
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t-------------------------~~l~~~~~~-ADivI~   86 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------------------KNLRHHVEN-ADLLIV   86 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------------------SCHHHHHHH-CSEEEE
T ss_pred             cccccceEEEEeccccccHHHHHHHHHhhcccccccccc-------------------------chhHHHHhh-hhHhhh
Confidence            356799999999999999999999999999998753221                         123444556 888888


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      ++|..
T Consensus        87 a~G~p   91 (166)
T d1b0aa1          87 AVGKP   91 (166)
T ss_dssp             CSCCT
T ss_pred             hccCc
Confidence            88854

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0082  Score=38.85  Aligned_cols=63  Identities=19%  Similarity=0.248  Sum_probs=43.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCC-ChHhHHHHhcC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTE-GSAKLSEAIGD  134 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~  134 (301)
                      .|+|.|.|+ |.+|+-++.+-.+.|++|++++-+++.....     ....++..++.+ +...+...+..
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~-----~a~dvIT~e~E~~~~~~l~~~la~   64 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAEPAAVP-----FQQSVITAEIERWPETALTRQLAR   64 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSCGGGSC-----GGGSEEEESSSCCCCCHHHHHHHT
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCCCcccc-----cccceEEEeeccCChHHHHHHHHH
Confidence            378999997 9999999999999999999988665543322     233455555554 13444444444

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.75  E-value=0.065  Score=37.32  Aligned_cols=82  Identities=22%  Similarity=0.336  Sum_probs=52.7

Q ss_pred             CeEEEEcCC---chHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGAT---GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGat---G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |+|.|.|++   +-.|..+.+.|++.|++|+.+..+.+..        .+...+        .++.+.-.. +|.++-+.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i--------~G~~~y--------~sl~~lp~~-~D~vvi~v   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI--------EGLKCY--------RSVRELPKD-VDVIVFVV   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE--------TTEECB--------SSGGGSCTT-CCEEEECS
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc--------cCcccc--------ccchhcccc-ceEEEEEe
Confidence            689999998   6799999999999999988653221111        122221        122222234 89888764


Q ss_pred             CCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEE
Q 022216          144 GFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (301)
Q Consensus       144 g~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~  179 (301)
                      .              -..+..+++.+.+.|++.+++
T Consensus        65 p--------------~~~~~~~l~~~~~~g~k~v~~   86 (116)
T d1y81a1          65 P--------------PKVGLQVAKEAVEAGFKKLWF   86 (116)
T ss_dssp             C--------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             C--------------HHHHHHHHHHHHhcCCceEEe
Confidence            2              233567788888888876544

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.74  E-value=0.003  Score=48.59  Aligned_cols=39  Identities=26%  Similarity=0.190  Sum_probs=34.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~  105 (301)
                      -++|.|.|+ |.+|+.++..++..|++|++.+++++.+++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~   42 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQ   42 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhh
Confidence            468999998 999999999999999999999998876543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0084  Score=44.87  Aligned_cols=93  Identities=22%  Similarity=0.373  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEE-eCCchh-h----hccccCCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGV-RDLDKA-K----TTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~-r~~~~~-~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      ..+|.|.|++|-+|+.+++.+.+. +.+++... |..... .    ++......++ .+.-|       +...+.. +|+
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~-~~~~~-------~~~~~~~-~DV   74 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGV-TVQSS-------LDAVKDD-FDV   74 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSC-CEESC-------STTTTTS-CSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCc-eeecc-------HHHHhcc-cce
Confidence            578999999999999999999887 56766543 332211 0    1110001111 11222       2334556 999


Q ss_pred             EEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          139 VVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       139 Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      ||...-              -.++...++.|.+.++ .+|.=+|
T Consensus        75 iIDFs~--------------p~~~~~~~~~a~~~~~-~~ViGTT  103 (162)
T d1diha1          75 FIDFTR--------------PEGTLNHLAFCRQHGK-GMVIGTT  103 (162)
T ss_dssp             EEECSC--------------HHHHHHHHHHHHHTTC-EEEECCC
T ss_pred             EEEecc--------------HHHHHHHHHHHHhccc-eeEEecC
Confidence            997652              3457888999998875 5555444

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.67  E-value=0.0096  Score=45.70  Aligned_cols=70  Identities=11%  Similarity=0.050  Sum_probs=49.0

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..++++++.|.|. |.||+.+++.|..-|.+|...+|..........          ..+.. ..++.+.++. .|+|+.
T Consensus        40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~----------~~~~~-~~~l~~~l~~-sD~v~~  106 (188)
T d2naca1          40 YDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE----------LNLTW-HATREDMYPV-CDVVTL  106 (188)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH----------HTCEE-CSSHHHHGGG-CSEEEE
T ss_pred             eeccccceeeccc-cccchhhhhhhhccCceEEEEeecccccccccc----------ccccc-cCCHHHHHHh-ccchhh
Confidence            4567999999996 999999999999999999998876433221110          00111 2446677888 888876


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      +..
T Consensus       107 ~~p  109 (188)
T d2naca1         107 NCP  109 (188)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.65  E-value=0.0059  Score=48.41  Aligned_cols=71  Identities=11%  Similarity=0.139  Sum_probs=50.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      .++++++|+|-|- |.+|+++++.|.+.|++|++.+.+...........  +..     ..+ .++   .+..++|+++-
T Consensus        35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~--g~~-----~~~-~~~---~~~~~cDIl~P  102 (230)
T d1leha1          35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE--GAD-----AVA-PNA---IYGVTCDIFAP  102 (230)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CCE-----ECC-GGG---TTTCCCSEEEE
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc--CCc-----ccC-Ccc---cccccccEecc
Confidence            4578999999997 99999999999999999998877766555443211  111     122 222   23335999999


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      ||-
T Consensus       103 cA~  105 (230)
T d1leha1         103 CAL  105 (230)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            985

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.65  E-value=0.0051  Score=43.79  Aligned_cols=37  Identities=24%  Similarity=0.145  Sum_probs=33.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA  103 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~  103 (301)
                      +++++|.|| |+||.++|..|.+.|.+|+++.|.+.-+
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            579999998 9999999999999999999998876543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.018  Score=43.24  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=33.8

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      .+++||+|.|.|-+.-+|+-++..|+++|++|++....
T Consensus        35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~   72 (170)
T d1a4ia1          35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK   72 (170)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cccccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence            45689999999999999999999999999999986543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0085  Score=52.11  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=51.0

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc-----cc-------------------cCCCCeEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT-----LS-------------------KDNPSLQIV  117 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~-----~~-------------------~~~~~~~~~  117 (301)
                      .+++.+|||.|+ |++|.++++.|+..|. ++.+++.+.-....+     ..                   ....++..+
T Consensus        34 ~l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~  112 (426)
T d1yovb1          34 LLDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  112 (426)
T ss_dssp             HHHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             HHhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence            356789999998 8899999999999997 788877653211110     00                   023355666


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEcc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      ..++.+ .  -.+.+++ .|+||.+.
T Consensus       113 ~~~i~~-~--~~~~~~~-~DlVi~~~  134 (426)
T d1yovb1         113 FNKIQD-F--NDTFYRQ-FHIIVCGL  134 (426)
T ss_dssp             CSCGGG-B--CHHHHTT-CSEEEECC
T ss_pred             eccccc-h--HHHHHHh-cchheecc
Confidence            666654 2  2356777 99998775

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.58  E-value=0.0092  Score=45.92  Aligned_cols=70  Identities=13%  Similarity=0.070  Sum_probs=48.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .++++++.|.|. |.||+.+++.+..-|.+|...++..........          ..... .+++.+.+.. .|+|+.+
T Consensus        44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~----------~~~~~-~~~l~~ll~~-sD~v~l~  110 (191)
T d1gdha1          44 KLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS----------YQATF-HDSLDSLLSV-SQFFSLN  110 (191)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH----------HTCEE-CSSHHHHHHH-CSEEEEC
T ss_pred             eecccceEEeec-ccchHHHHHHHHhhccccccccccccccchhhc----------ccccc-cCCHHHHHhh-CCeEEec
Confidence            457899999997 999999999999999999988765443221110          00011 2457777888 8988766


Q ss_pred             cCC
Q 022216          143 TGF  145 (301)
Q Consensus       143 Ag~  145 (301)
                      ...
T Consensus       111 ~pl  113 (191)
T d1gdha1         111 APS  113 (191)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.58  E-value=0.012  Score=45.48  Aligned_cols=65  Identities=20%  Similarity=0.203  Sum_probs=46.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+|+|.|.|. |.||+.+++.|..-|.+|++.++.......      ...     +    ..++.+.++. .|+|+.+
T Consensus        42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~------~~~-----~----~~~l~~l~~~-~D~v~~~  104 (199)
T d1dxya1          42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGDH------PDF-----D----YVSLEDLFKQ-SDVIDLH  104 (199)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSCC------TTC-----E----ECCHHHHHHH-CSEEEEC
T ss_pred             cccceeeeeeec-ccccccccccccccceeeeccCCccchhhh------cch-----h----HHHHHHHHHh-cccceee
Confidence            457899999997 999999999999999999998775443211      111     1    1235666777 8877765


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      ..
T Consensus       105 ~p  106 (199)
T d1dxya1         105 VP  106 (199)
T ss_dssp             CC
T ss_pred             ec
Confidence            53

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.49  E-value=0.0075  Score=45.98  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~  101 (301)
                      +|+|+|.|| |..|...|..|+++|+ +|+++.|...
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            689999998 9999999999999998 5988887653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.48  E-value=0.011  Score=41.66  Aligned_cols=36  Identities=17%  Similarity=0.059  Sum_probs=32.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .+++++|.|| |++|..+|..|.+.|.+|.++.|.+.
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            3689999998 99999999999999999999988754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.44  E-value=0.0083  Score=42.79  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .++++|.|| |+||.++|..|.+.|.+|+++.+.+.
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            589999998 99999999999999999999987654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.39  E-value=0.0052  Score=46.67  Aligned_cols=73  Identities=18%  Similarity=0.256  Sum_probs=48.5

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCC--CCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDN--PSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      |+|-|.|- |.+|..+++.|+++|++|.+.+|++++.+.+.....  ........ ..+ .+.+...+.. .+.++-+.
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~-~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FET-MEAFAASLKK-PRKALILV   76 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSC-HHHHHHHBCS-SCEEEECC
T ss_pred             CEEEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhh-hhHHHHhccc-ceEEEEee
Confidence            57889985 999999999999999999999999888776543211  11111111 122 3455556666 66665543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.34  E-value=0.01  Score=47.32  Aligned_cols=36  Identities=25%  Similarity=0.239  Sum_probs=32.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      +.++|+|.|| |..|..+|..|+++|++|+++.|+++
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3578999998 99999999999999999999987654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.32  E-value=0.0083  Score=48.62  Aligned_cols=34  Identities=29%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      +|+|+|.|| |.-|...|..|+++|++|.++.+++
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            589999998 9999999999999999999997654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.013  Score=44.53  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=33.4

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .++|+|+|.|| |..|.+.|..|+++|++|+++.+.+.
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence            35799999998 99999999999999999999988753

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.30  E-value=0.015  Score=44.39  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=47.8

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCA  142 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~  142 (301)
                      .+.+|++.|.|. |.||+.+++.+..-|.+|++.++...+.....    ..+.         ..++.+.++. .|+|+.+
T Consensus        41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~----~~~~---------~~~l~ell~~-sDiv~~~  105 (184)
T d1ygya1          41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ----LGIE---------LLSLDDLLAR-ADFISVH  105 (184)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH----HTCE---------ECCHHHHHHH-CSEEEEC
T ss_pred             cccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHhh----cCce---------eccHHHHHhh-CCEEEEc
Confidence            457899999996 99999999999999999998877654433211    0111         1236677777 8888766


Q ss_pred             cC
Q 022216          143 TG  144 (301)
Q Consensus       143 Ag  144 (301)
                      ..
T Consensus       106 ~P  107 (184)
T d1ygya1         106 LP  107 (184)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.26  E-value=0.1  Score=36.77  Aligned_cols=93  Identities=10%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHH-CCCeEEEEEeC-CchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRD-LDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      .+|+|.|| |.+|+++++.+.. .|++++++..+ +.+.....    .++.++..      +.+.+.....+++.+.+..
T Consensus         4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I----~Gi~V~~~------~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPV----RGGVIEHV------DLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE----TTEEEEEG------GGHHHHSTTTCCEEEECSC
T ss_pred             ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE----CCEEEecH------HHHHHHHhhcccEEEEeCC
Confidence            48999998 9999999987754 47888887554 33322222    35555532      3344444444777666542


Q ss_pred             CCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccc
Q 022216          145 FQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSIL  184 (301)
Q Consensus       145 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~  184 (301)
                                    -.....+++.+.+.|++.|..++...
T Consensus        73 --------------~~~~~~I~d~l~~~gIk~I~~f~~~~   98 (126)
T d2dt5a2          73 --------------REAAQKAADLLVAAGIKGILNFAPVV   98 (126)
T ss_dssp             --------------HHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred             --------------HHHHHHHHHHHHHcCCCEEeecCcee
Confidence                          23356788889899998888876654

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0088  Score=53.56  Aligned_cols=109  Identities=12%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhc----------------------cccCCC--CeEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTT----------------------LSKDNP--SLQIV  117 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~----------------------~~~~~~--~~~~~  117 (301)
                      .+...+|+|.|+ |++|.++++-|+..|. ++++++.+.-....+                      +.+..+  ++..+
T Consensus        22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~  100 (529)
T d1yova1          22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV  100 (529)
T ss_dssp             HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence            456789999997 8999999999999996 677776543221110                      001112  23333


Q ss_pred             EccCCCChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccccccc
Q 022216          118 KADVTEGSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNG  187 (301)
Q Consensus       118 ~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~  187 (301)
                      ..++.+..+.-.+.+.+ +|+||.+..             |......+-++|++.++ .+|..++.+.||
T Consensus       101 ~~~~~~~~~~~~~~~~~-~dvVv~~~~-------------~~~~~~~l~~~c~~~~i-p~i~~~~~G~~G  155 (529)
T d1yova1         101 EESPENLLDNDPSFFCR-FTVVVATQL-------------PESTSLRLADVLWNSQI-PLLICRTYGLVG  155 (529)
T ss_dssp             SSCHHHHHHSCGGGGGG-CSEEEEESC-------------CHHHHHHHHHHHHHHTC-CEEEEEEETTEE
T ss_pred             cCCchhhhhhHHHHhcC-CCEEEECCC-------------CHHHHHHHHHHHHHcCC-CEEEEeccCCEE
Confidence            33222100111234556 888887642             34556678888888886 588888776655

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.14  E-value=0.0086  Score=49.05  Aligned_cols=36  Identities=22%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      ++++++|+|-|- |.+|+++++.|.+.|++|+.++..
T Consensus        33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcc
Confidence            567999999997 999999999999999999988654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.03  E-value=0.014  Score=48.44  Aligned_cols=35  Identities=40%  Similarity=0.425  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .|+|+|.|| |.-|..+|..|++.|++|.++-++..
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            689999998 99999999999999999999977653

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.95  E-value=0.069  Score=38.51  Aligned_cols=84  Identities=19%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             cCCeEEEEcCC---chHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           65 KQKKIFVAGAT---GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        65 ~~~~vlVtGat---G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      +.|+|.|.|++   +..|..+++.|.+.|++|+.+.-+....        .+...+        .++.+.-.. +|.++-
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i--------~G~~~~--------~sl~dlp~~-iD~v~i   80 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV--------LGRKCY--------PSVLDIPDK-IEVVDL   80 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE--------TTEECB--------SSGGGCSSC-CSEEEE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc--------CCCccc--------ccccccCcc-ceEEEE
Confidence            47899999998   7899999999999999988654222111        111111        122222233 898887


Q ss_pred             ccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEE
Q 022216          142 ATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFIL  179 (301)
Q Consensus       142 ~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~  179 (301)
                      +..              -.....+++.+.+.|++.+++
T Consensus        81 ~vp--------------~~~~~~~~~e~~~~g~k~v~~  104 (139)
T d2d59a1          81 FVK--------------PKLTMEYVEQAIKKGAKVVWF  104 (139)
T ss_dssp             CSC--------------HHHHHHHHHHHHHHTCSEEEE
T ss_pred             EeC--------------HHHHHHHHHHHHHhCCCEEEE
Confidence            652              334677888888888865555

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.025  Score=43.21  Aligned_cols=68  Identities=16%  Similarity=0.073  Sum_probs=48.7

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ..+.+++|.|.|. |.||+.+++.|..-|.+|+..++......       ...  .  .    .+.+.+.++. .|+|+.
T Consensus        40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~~~--~--~----~~~l~ell~~-sDii~i  102 (188)
T d1sc6a1          40 FEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPL-------GNA--T--Q----VQHLSDLLNM-SDVVSL  102 (188)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCC-------TTC--E--E----CSCHHHHHHH-CSEEEE
T ss_pred             ccccceEEEEeec-ccchhhhhhhcccccceEeeccccccchh-------hhh--h--h----hhhHHHHHhh-ccceee
Confidence            3567899999986 99999999999999999999876543211       111  0  1    1346777888 998887


Q ss_pred             ccCCC
Q 022216          142 ATGFQ  146 (301)
Q Consensus       142 ~Ag~~  146 (301)
                      +....
T Consensus       103 ~~plt  107 (188)
T d1sc6a1         103 HVPEN  107 (188)
T ss_dssp             CCCSS
T ss_pred             cccCC
Confidence            76543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.76  E-value=0.015  Score=43.39  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=30.1

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC--eEEEEEeCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF--AVKAGVRDL  100 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~--~V~~~~r~~  100 (301)
                      .||+|+|.|| |++|..++..|.+.|.  +|+++.+++
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            3799999998 9999999999999884  778776654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.74  E-value=0.13  Score=38.21  Aligned_cols=66  Identities=11%  Similarity=0.228  Sum_probs=41.0

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEE-eCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGV-RDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      |+..+|.|.|. |.+|+..++.|.+. +.+++++. |+.+...        ......      ..+......+ +|+|+.
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~--------~~~~~~------~~~~~~~~~~-~D~Vvi   64 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDT--------KTPVFD------VADVDKHADD-VDVLFL   64 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSS--------SSCEEE------GGGGGGTTTT-CSEEEE
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccccc--------cccccc------chhhhhhccc-cceEEE
Confidence            34568999995 99999999999886 56777664 4433211        111111      1122333456 999998


Q ss_pred             ccCC
Q 022216          142 ATGF  145 (301)
Q Consensus       142 ~Ag~  145 (301)
                      +...
T Consensus        65 ~tp~   68 (170)
T d1f06a1          65 CMGS   68 (170)
T ss_dssp             CSCT
T ss_pred             eCCC
Confidence            8754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.55  E-value=0.098  Score=41.47  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=32.4

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      ++++++|+|-|- |.+|+++++.|.+.|++|+.++..
T Consensus        28 ~l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence            578999999995 999999999999999999987644

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.53  E-value=0.016  Score=46.56  Aligned_cols=31  Identities=19%  Similarity=0.089  Sum_probs=29.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|| |.+|..+|..|+++|.+|+++.+..
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            999998 9999999999999999999998764

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.44  E-value=0.034  Score=40.73  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRD   99 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~   99 (301)
                      +|+|.|.|+||-||....+-+.+.  .++|+++.-.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~   37 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN   37 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence            589999999999999999988776  4788887543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.44  E-value=0.081  Score=37.90  Aligned_cols=30  Identities=27%  Similarity=0.449  Sum_probs=24.9

Q ss_pred             eEEEEcCCchHHHHHHHHHHHC-CCeEEEEE
Q 022216           68 KIFVAGATGSSGKRIVEQLLAK-GFAVKAGV   97 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~   97 (301)
                      +|.|.|++|-.|+.+++.+.+. ++++....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~   31 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAEL   31 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            6899999999999999988775 56776543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.15  E-value=0.021  Score=46.81  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      +.|+|+|.|| |-.|...|..|+++|++|.++.+..
T Consensus        29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999998 9999999999999999999997654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.13  E-value=0.032  Score=43.92  Aligned_cols=36  Identities=22%  Similarity=0.463  Sum_probs=32.6

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      ++++|+|.|| |..|...|..|+++|++|+++.+...
T Consensus        48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          48 NKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCceEEEEcc-cHHHHHHHHHHHHhccceeeEeeccc
Confidence            5789999998 99999999999999999999877653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.86  E-value=0.034  Score=41.62  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=29.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      ++++|+|.|| |.+|-+++..|.+.|.+|.++.+..
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            3678999998 9999999999999998876665544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.85  E-value=0.025  Score=45.51  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|+|.|| |.-|...|..|+++|++|+++-++.
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            57999998 9999999999999999999987654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.76  E-value=0.32  Score=36.11  Aligned_cols=109  Identities=18%  Similarity=0.126  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCchHHHH--HHHHHHHC----CCeEEEEEeCCchhhhcc-------ccCCCCeEEEEccCCCChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGKR--IVEQLLAK----GFAVKAGVRDLDKAKTTL-------SKDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~--~~~~l~~~----G~~V~~~~r~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      .+||.|.|| |.+|..  ++..|+..    +.++++.++++++++...       ........+..      .....+++
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~------~td~~eaL   74 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK------TMNLDDVI   74 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE------ESCHHHHH
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE------eCChhhcc
Confidence            479999997 888865  34445433    468999999877654311       11222332222      12366788


Q ss_pred             cCCCCEEEEccCCCCCC----------------C------------CCCceeeehHHHHHHHHHHHHcCCC-EEEEecc
Q 022216          133 GDDSEAVVCATGFQPGW----------------D------------LFAPWKVDNFGTVNLVEACRKRGVN-RFILISS  182 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~~----------------~------------~~~~~~~N~~g~~~l~~a~~~~~~~-~iV~~SS  182 (301)
                      .+ .|+||+++++...+                .            ......-|+.-...+++.+++...+ .+|++|-
T Consensus        75 ~d-ad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TN  152 (171)
T d1obba1          75 ID-ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAAN  152 (171)
T ss_dssp             TT-CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cC-CCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECC
Confidence            88 99999998753210                0            0001123667778888888887654 4555443

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.047  Score=39.97  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=28.3

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRD   99 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~   99 (301)
                      +|+|.|.|+||-||....+-+.+.  .++|+++.-.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            478999999999999999988876  3688887543

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.1  Score=36.81  Aligned_cols=75  Identities=19%  Similarity=0.186  Sum_probs=51.0

Q ss_pred             cCCeEEEEcCC----------chHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC
Q 022216           65 KQKKIFVAGAT----------GSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        65 ~~~~vlVtGat----------G~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      +.|+|||.|+.          -+.+.+.+++|.+.|++++.+.-+++....... ..+++   ...-.. .+.+.+.+..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d-~aD~l---YfePlt-~e~v~~Ii~~   80 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE-MADAT---YIEPIH-WEVVRKIIEK   80 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGG-GSSEE---ECSCCC-HHHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChh-hccee---eeecCC-HHHHHHHHHH
Confidence            35899999983          467899999999999999998888776432211 11222   122222 4667777655


Q ss_pred             -CCCEEEEccC
Q 022216          135 -DSEAVVCATG  144 (301)
Q Consensus       135 -~~d~Vi~~Ag  144 (301)
                       ++|.|+-..|
T Consensus        81 E~pd~il~~~G   91 (127)
T d1a9xa3          81 ERPDAVLPTMG   91 (127)
T ss_dssp             HCCSEEECSSS
T ss_pred             hCcCCeEEEee
Confidence             6999987665

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.26  E-value=0.16  Score=35.32  Aligned_cols=90  Identities=18%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCc----------hHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-
Q 022216           66 QKKIFVAGATG----------SSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-  134 (301)
Q Consensus        66 ~~~vlVtGatG----------~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-  134 (301)
                      .|+|||.|+..          +.+.+.+++|.+.|++++++.-+|+...-... ..++  .+---+ . .+.+.+.+.. 
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d-~aD~--lYfepl-t-~e~v~~Ii~~E   78 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYD-TSDR--LYFEPV-T-LEDVLEIVRIE   78 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTT-SSSE--EECCCC-S-HHHHHHHHHHH
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChh-hcCc--eEEccC-C-HHHHHHHHHHh
Confidence            68999999843          78899999999999999998888776432110 1111  111122 2 4667666654 


Q ss_pred             CCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCC
Q 022216          135 DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      ++|.|+-..|-.              -..|+...+.+.|+
T Consensus        79 ~p~~ii~~~GGQ--------------talnla~~L~~~gv  104 (121)
T d1a9xa4          79 KPKGVIVQYGGQ--------------TPLKLARALEAAGV  104 (121)
T ss_dssp             CCSEEECSSSTH--------------HHHTTHHHHHHTTC
T ss_pred             CCCEEEeehhhh--------------hHHHHHHHHHHcCC
Confidence            689888765532              13556666777775

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.15  E-value=0.067  Score=39.11  Aligned_cols=37  Identities=16%  Similarity=0.091  Sum_probs=29.8

Q ss_pred             CCeEEEE-cCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           66 QKKIFVA-GATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        66 ~~~vlVt-GatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      ++.++|. .+.|+||.+++..|++.|.+|+++.+.+.-
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            4555555 355999999999999999999999887543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.00  E-value=0.044  Score=44.06  Aligned_cols=31  Identities=29%  Similarity=0.175  Sum_probs=28.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|| |..|..+|..|+++|++|+++.+..
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            899998 9999999999999999999998753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.055  Score=44.11  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      .++|+|.|| |.-|...|..|.++|++|.++-++
T Consensus         5 ~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence            467999998 999999999999999999998543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.88  E-value=0.049  Score=42.23  Aligned_cols=31  Identities=19%  Similarity=0.124  Sum_probs=28.7

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|| |.-|..+|..|+++|++|.++.++.
T Consensus         8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            899996 9999999999999999999998764

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.83  E-value=0.036  Score=41.51  Aligned_cols=109  Identities=6%  Similarity=-0.103  Sum_probs=57.6

Q ss_pred             CeEEEEcC-CchHHHHHHHHHHHCC----CeEEEEEeCCch--hhhccc-----cCCCCeEEEEccCCCChHhHHHHhcC
Q 022216           67 KKIFVAGA-TGSSGKRIVEQLLAKG----FAVKAGVRDLDK--AKTTLS-----KDNPSLQIVKADVTEGSAKLSEAIGD  134 (301)
Q Consensus        67 ~~vlVtGa-tG~iG~~~~~~l~~~G----~~V~~~~r~~~~--~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~~~  134 (301)
                      +||.|.|| +.+.+..++.-++...    .++++++++++.  ++....     ....+.......-+|    ..+++++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td----~~~al~g   77 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLD----RRRALDG   77 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESC----HHHHHTT
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCC----chhhcCC
Confidence            57889997 3345555555444432    378888877643  221110     001112222222233    4567888


Q ss_pred             CCCEEEEccCCCCCCCCC--------------C--------ceeeehHHHHHHHHHHHHcCCCEEEEe
Q 022216          135 DSEAVVCATGFQPGWDLF--------------A--------PWKVDNFGTVNLVEACRKRGVNRFILI  180 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~~~~--------------~--------~~~~N~~g~~~l~~a~~~~~~~~iV~~  180 (301)
                       .|+||++|++.....+.              .        ...-|+.-...+++.+++....-++++
T Consensus        78 -aDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~  144 (169)
T d1s6ya1          78 -ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLIN  144 (169)
T ss_dssp             -CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             -CCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEE
Confidence             99999999875321000              0        011355556677777777765544444

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.59  E-value=0.042  Score=43.49  Aligned_cols=36  Identities=22%  Similarity=0.182  Sum_probs=30.6

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHH-CCCeEEEEEeC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLA-KGFAVKAGVRD   99 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~-~G~~V~~~~r~   99 (301)
                      ++++++|+|-|- |.+|+++++.|.+ .|.+|+.++..
T Consensus        28 ~l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          28 DPKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeecC
Confidence            567999999985 9999999999975 59999987643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.44  E-value=0.044  Score=44.29  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .|+|.|| |-.|..++..|.+.|++|.++.|+++
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            6999998 89999999999999999999988764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=92.25  E-value=0.061  Score=43.76  Aligned_cols=32  Identities=22%  Similarity=0.527  Sum_probs=28.7

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL  100 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~  100 (301)
                      .|+|.|| |-+|..+|..|+++|. +|+++.|+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            5999998 9999999999999996 699998764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.09  E-value=0.013  Score=46.10  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=24.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVK   94 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~   94 (301)
                      |+|+|.|| |-+|..+|..|+++|++|+
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~   27 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVL   27 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCce
Confidence            68999998 9999999999999997643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.08  E-value=0.11  Score=35.92  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHH---CCCeEEEEEeCCch
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLA---KGFAVKAGVRDLDK  102 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~---~G~~V~~~~r~~~~  102 (301)
                      +++++|.|| |++|-+++..|.+   .|.+|.++.|.+.-
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccccc
Confidence            589999998 9999999976554   48899999887543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.99  E-value=0.1  Score=36.10  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=28.1

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHH---CCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLA---KGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~---~G~~V~~~~r~~~  101 (301)
                      +++++|.|| |++|-++|..|.+   +|.+|+++.|.+.
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            579999998 9999999966554   4568999887654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.1  Score=37.30  Aligned_cols=37  Identities=24%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHH----HCCCeEEEEEeCCch
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLL----AKGFAVKAGVRDLDK  102 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~----~~G~~V~~~~r~~~~  102 (301)
                      +.++++|.|| |++|-+++..|.    +.|.+|+++.+.+..
T Consensus        36 ~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          36 EVKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             HCSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            3689999998 999999999886    358999998776543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.73  E-value=0.09  Score=35.85  Aligned_cols=38  Identities=16%  Similarity=0.047  Sum_probs=32.3

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .+++|+|+|.|+ |.-|..++..|++.+.+|+.+.|+..
T Consensus        29 ~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          29 LFVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             GGTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             hcCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            457999999997 89999999999998888777777654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=0.067  Score=43.73  Aligned_cols=34  Identities=15%  Similarity=0.081  Sum_probs=30.1

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      ..|+|.|| |.-|..+|..|++.|++|.++.++..
T Consensus         2 ~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           2 YDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             ccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            46899998 99999999999999999999976643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.58  E-value=0.13  Score=40.69  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLD  101 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~  101 (301)
                      ++|+|.|| |..|..++..|.++|. +|.++-|.+.
T Consensus         2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            57999998 9999999999999995 8888887654

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.35  Score=39.21  Aligned_cols=28  Identities=29%  Similarity=0.325  Sum_probs=24.9

Q ss_pred             cCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           73 GATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        73 GatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      -.||..|.++|+.|+.+|++|+++.+..
T Consensus        43 ~SSGk~G~alA~~~~~~Ga~V~li~g~~   70 (290)
T d1p9oa_          43 FSSGRRGATSAEAFLAAGYGVLFLYRAR   70 (290)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCchHHHHHHHHHHHHcCCEEEEEecCC
Confidence            4579999999999999999999987664

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.32  E-value=0.1  Score=39.22  Aligned_cols=98  Identities=12%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEeC-CchhhhccccCCCCeEE--------EEccCCCChHhHHHHhcCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVRD-LDKAKTTLSKDNPSLQI--------VKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r~-~~~~~~~~~~~~~~~~~--------~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      -+|.|-| .|.||+.+++.+.+++ .+|+++... +................        -...+.- ...+...+.+ +
T Consensus         2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~g~~~~~~~~-v   78 (178)
T d1b7go1           2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV-AGTVEDLIKT-S   78 (178)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC-CCCHHHHHHH-C
T ss_pred             eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec-CCchhhhhhc-C
Confidence            3788998 5999999999999875 677776443 22221111101111000        0001111 1234455566 9


Q ss_pred             CEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecc
Q 022216          137 EAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISS  182 (301)
Q Consensus       137 d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS  182 (301)
                      |+||-|.|...              ...-++...+.| +|+|+.++
T Consensus        79 DiViecTG~f~--------------~~e~a~~hl~~G-~KvIi~~~  109 (178)
T d1b7go1          79 DIVVDTTPNGV--------------GAQYKPIYLQLQ-RNAIFQGG  109 (178)
T ss_dssp             SEEEECCSTTH--------------HHHHHHHHHHTT-CEEEECTT
T ss_pred             CEEEECCCCcC--------------CHHHHHHHHHcC-CEEEEECC
Confidence            99999998531              223344555667 57777544

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.27  E-value=0.098  Score=40.73  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=28.5

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL  100 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~  100 (301)
                      +|+|.|| |.-|...|..|.++|+ +|+++-++.
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            6999998 9999999999999996 699987654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.05  E-value=0.33  Score=35.18  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=29.0

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhh
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKT  105 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~  105 (301)
                      +|-+.|- |.+|..+++.|++.|+.++ ..|+.++..+
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~~~~-~~~~~~~~~~   37 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFPTLV-WNRTFEKALR   37 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSCEEE-ECSSTHHHHH
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCCEEE-EeCCHHHHHH
Confidence            5888886 9999999999999998764 5777665544

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.00  E-value=0.12  Score=41.34  Aligned_cols=37  Identities=16%  Similarity=0.104  Sum_probs=32.6

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      .++++++|+|-|- |.+|+++++.|.+.|++|+.+...
T Consensus        32 ~~l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          32 DTLVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             CCSTTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence            3578999999995 999999999999999999987653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.89  E-value=0.13  Score=39.01  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=27.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDL  100 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~  100 (301)
                      |+|+|.|| |++|.++|..|.+.+  .+|+++.|..
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            68999998 999999999998874  5788877654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.74  E-value=0.14  Score=42.33  Aligned_cols=35  Identities=34%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC--CeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG--FAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G--~~V~~~~r~~~  101 (301)
                      .|+|+|.|| |.-|..++..|+++|  ++|+++-|+..
T Consensus         4 ~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           4 IRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            589999998 999999999999887  59999887753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.14  Score=41.85  Aligned_cols=31  Identities=26%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|| |.-|...|..|+++|++|+++-++.
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            789998 9999999999999999999997654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=90.13  E-value=1.2  Score=32.85  Aligned_cols=98  Identities=14%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEe-CCchhhhccccCCCCeEEEEcc-----------CCCChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVR-DLDKAKTTLSKDNPSLQIVKAD-----------VTEGSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~D-----------l~~~~~~~~~~~  132 (301)
                      +++|.|-| -|-||+.+.+.+.+++ .+|+.+.. .+..........  +...+..+           +.- ...+..++
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~v-~g~~~~~~   76 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKK--GYDLYVAIPERVKLFEKAGIEV-AGTVDDML   76 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHT--TCCEEESSGGGHHHHHHTTCCC-CEEHHHHH
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhc--CCceEecccccceeecccCccc-CCChhHhh
Confidence            46889998 5999999999998886 46666543 332211111001  11111111           111 12345556


Q ss_pred             cCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          133 GDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                      .+ +|+||-|.|...              +..-++.-.+.|+ ++|+.|+.
T Consensus        77 ~~-vDvViEcTG~f~--------------~~~~~~~hl~~G~-K~vi~~~~  111 (171)
T d1cf2o1          77 DE-ADIVIDCTPEGI--------------GAKNLKMYKEKGI-KAIFQGGE  111 (171)
T ss_dssp             HT-CSEEEECCSTTH--------------HHHHHHHHHHTTC-EEEECTTS
T ss_pred             cC-CCEEEEccCCCC--------------CHHHHHHHHHcCC-CEEEECCC
Confidence            67 999999998531              2222344445675 67776654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.01  E-value=0.15  Score=41.64  Aligned_cols=35  Identities=29%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      .-.|+|+|| |..|..++..|.++|.+|+++.+.++
T Consensus         7 ~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            346999998 99999999999999999999987653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.89  E-value=0.16  Score=39.71  Aligned_cols=32  Identities=22%  Similarity=0.182  Sum_probs=29.3

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      |+|.|| |-.|...|..|+++|++|.++.+...
T Consensus         5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            899998 99999999999999999999987654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.83  E-value=0.16  Score=37.15  Aligned_cols=31  Identities=23%  Similarity=0.418  Sum_probs=26.3

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      +|+|.|| |++|.+++..|.+ +.+|+++.|.+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CCCEEEEeccc
Confidence            6899998 9999999999864 78999887653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.51  E-value=0.23  Score=36.21  Aligned_cols=35  Identities=23%  Similarity=0.168  Sum_probs=29.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCe-EEEEEeCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFA-VKAGVRDL  100 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~-V~~~~r~~  100 (301)
                      -+++|+|.|| |..|...+..+++.|++ |+++.|+.
T Consensus        44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3678999997 99999999999999975 66766654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.45  E-value=0.14  Score=37.99  Aligned_cols=74  Identities=22%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             CCeEEEEcCCchHHH-HHHHHHHHC-----CCeEEEEEeCCchhhhccc-------cCCCCeEEEEccCCCChHhHHHHh
Q 022216           66 QKKIFVAGATGSSGK-RIVEQLLAK-----GFAVKAGVRDLDKAKTTLS-------KDNPSLQIVKADVTEGSAKLSEAI  132 (301)
Q Consensus        66 ~~~vlVtGatG~iG~-~~~~~l~~~-----G~~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~~~~~~~  132 (301)
                      ..+|.|.|| |.+|. .++..|+..     +.++++.+.++++++....       .......+...      ....+++
T Consensus         3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~eal   75 (167)
T d1u8xx1           3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT------TDPEEAF   75 (167)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE------SCHHHHH
T ss_pred             CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec------CChhhcc
Confidence            457889998 44554 344455542     2478888888776542111       01122222221      2356778


Q ss_pred             cCCCCEEEEccCCCC
Q 022216          133 GDDSEAVVCATGFQP  147 (301)
Q Consensus       133 ~~~~d~Vi~~Ag~~~  147 (301)
                      ++ .|+||.+||...
T Consensus        76 ~~-AD~Vvitag~~~   89 (167)
T d1u8xx1          76 TD-VDFVMAHIRVGK   89 (167)
T ss_dssp             SS-CSEEEECCCTTH
T ss_pred             CC-CCEEEECCCcCC
Confidence            89 999999998743

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.34  E-value=0.099  Score=39.07  Aligned_cols=31  Identities=26%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEe
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVR   98 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r   98 (301)
                      .+|+|.|| |++|.+++..|.+.|.++.++.+
T Consensus         4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           4 APVVVLGA-GLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCEEEECc-cHHHHHHHHHHHhcCCceEEEEE
Confidence            35999997 99999999999999977655543

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.20  E-value=0.26  Score=37.73  Aligned_cols=74  Identities=18%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh-hhcccc------CCCCeEEEE-ccCCCChHhHHHHhcC-CCC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA-KTTLSK------DNPSLQIVK-ADVTEGSAKLSEAIGD-DSE  137 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~-~~~~~~------~~~~~~~~~-~Dl~~~~~~~~~~~~~-~~d  137 (301)
                      |+|+|.|. +..|..+.+.|.++|++|.++.-.+++. ......      ...++.++. .++.+  +.+.+.+.. ++|
T Consensus         1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~--~~~~~~i~~~~~D   77 (203)
T d2blna2           1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNH--PLWVERIAQLSPD   77 (203)
T ss_dssp             CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCS--HHHHHHHHHTCCS
T ss_pred             CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccc--hhhhhhhhhhccc
Confidence            57888865 6789999999999999997665322211 100000      112444444 34444  334444443 588


Q ss_pred             EEEEcc
Q 022216          138 AVVCAT  143 (301)
Q Consensus       138 ~Vi~~A  143 (301)
                      ++|...
T Consensus        78 lii~~g   83 (203)
T d2blna2          78 VIFSFY   83 (203)
T ss_dssp             EEEEES
T ss_pred             ceeeee
Confidence            887664

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.57  E-value=0.47  Score=35.55  Aligned_cols=72  Identities=17%  Similarity=0.218  Sum_probs=49.4

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCCCC
Q 022216           74 ATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQP  147 (301)
Q Consensus        74 atG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~~~  147 (301)
                      +|=|-|.| .+.+++++.+|++++|+++...........++.++..+..+ .+.....+.. ++|.|+.--|+..
T Consensus        25 ~T~G~GGh-s~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~-~~~~l~~~~~~~vdgIl~DLGvSs   97 (182)
T d1wg8a2          25 ATLGGAGH-ARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH-LKRHLAALGVERVDGILADLGVSS   97 (182)
T ss_dssp             TTCTTSHH-HHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG-HHHHHHHTTCSCEEEEEEECSCCH
T ss_pred             eCCCCcHH-HHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHH-HHHHHHHcCCCccCEEEEEccCCH
Confidence            44444445 45666777899999999876554332245789999999988 5555544432 4999998888764

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=88.45  E-value=0.18  Score=37.13  Aligned_cols=98  Identities=16%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             CeEEEEcCCchHHHH-HHHHHHHC-CCeEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEccC
Q 022216           67 KKIFVAGATGSSGKR-IVEQLLAK-GFAVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus        67 ~~vlVtGatG~iG~~-~~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                      ++|.|.|+ |.+|.. ....|.+. +.++++.+++++....+.....  +..+.   +| .+.+.+  .+ +|+|+.+..
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~---~~-~~~ll~--~~-iD~V~I~tp   71 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR--VSATC---TD-YRDVLQ--YG-VDAVMIHAA   71 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT--CCCCC---SS-TTGGGG--GC-CSEEEECSC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcc--ccccc---cc-HHHhcc--cc-cceeccccc
Confidence            57899996 888865 56666655 4577776777666655443221  11111   22 122222  25 999987653


Q ss_pred             CCC-----------CCC--CCCceeeehHHHHHHHHHHHHcCC
Q 022216          145 FQP-----------GWD--LFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       145 ~~~-----------~~~--~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      ...           ...  .+.-+..|..-...+.+++++.+.
T Consensus        72 ~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          72 TDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             GGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            221           010  112235788889999999998875

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=88.41  E-value=0.094  Score=38.60  Aligned_cols=70  Identities=19%  Similarity=0.181  Sum_probs=38.2

Q ss_pred             CCeEEEEcCCchHHHHHH-HHHHHCC-CeEEEE-EeCCchhh-hccccCCCCeEEEEccCCCChHhHHHH--hcCCCCEE
Q 022216           66 QKKIFVAGATGSSGKRIV-EQLLAKG-FAVKAG-VRDLDKAK-TTLSKDNPSLQIVKADVTEGSAKLSEA--IGDDSEAV  139 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~-~~l~~~G-~~V~~~-~r~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~~~d~V  139 (301)
                      ..+|.|.| +|+||..+. +.|.+.. .+++++ +|+.+... ...  ...++.+....    .+.+.+.  +.+ +|+|
T Consensus         4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a--~~~~i~~~~~~----~d~l~~~~~~~~-iDiV   75 (157)
T d1nvmb1           4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA--QRMGVTTTYAG----VEGLIKLPEFAD-IDFV   75 (157)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH--HHTTCCEESSH----HHHHHHSGGGGG-EEEE
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh--hhcCCcccccc----eeeeeecccccc-cCEE
Confidence            45899999 899998654 5544443 477766 45554322 111  11233332211    2333332  345 9999


Q ss_pred             EEcc
Q 022216          140 VCAT  143 (301)
Q Consensus       140 i~~A  143 (301)
                      |.+.
T Consensus        76 f~AT   79 (157)
T d1nvmb1          76 FDAT   79 (157)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9864

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.28  E-value=0.23  Score=36.58  Aligned_cols=72  Identities=21%  Similarity=0.125  Sum_probs=43.0

Q ss_pred             CeEEEEcCCchHHHHHHHH-HHHC-----CCeEEEEEeCCchhhhcccc----CCCCeEEEEccCCCChHhHHHHhcCCC
Q 022216           67 KKIFVAGATGSSGKRIVEQ-LLAK-----GFAVKAGVRDLDKAKTTLSK----DNPSLQIVKADVTEGSAKLSEAIGDDS  136 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~-l~~~-----G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~  136 (301)
                      |||.|.|| |.+|...+-. |++.     +.++++.+.++++.+.....    ......+..   +.   ...+.+++ .
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~---t~---~~~~~l~~-a   72 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---SD---TFEGAVVD-A   72 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---CS---SHHHHHTT-C
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE---ec---CcccccCC-C
Confidence            57999998 5566555532 3221     35899988887765432110    112222222   22   24567888 9


Q ss_pred             CEEEEccCCC
Q 022216          137 EAVVCATGFQ  146 (301)
Q Consensus       137 d~Vi~~Ag~~  146 (301)
                      |+||..||..
T Consensus        73 DvVVita~~~   82 (162)
T d1up7a1          73 KYVIFQFRPG   82 (162)
T ss_dssp             SEEEECCCTT
T ss_pred             CEEEEecccC
Confidence            9999999864

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.18  E-value=0.23  Score=40.21  Aligned_cols=31  Identities=19%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|+ |..|...+..|+++|.+|+++.+.+
T Consensus        19 VlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGS-GGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            899997 9999999999999999999987654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.02  E-value=0.81  Score=33.80  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=55.9

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CeEEEEEe-CCchhhhccccCCCCeEEEEccCCC----------ChHhHHHHhcC
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKG-FAVKAGVR-DLDKAKTTLSKDNPSLQIVKADVTE----------GSAKLSEAIGD  134 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G-~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~Dl~~----------~~~~~~~~~~~  134 (301)
                      ++|.|-|- |-||+.+++.+.++. .+|+.+.. .+......+.  ..+...+..+-..          ....+...+.+
T Consensus         3 irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (172)
T d2czca2           3 VKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAK--ELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK   79 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHH--HTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             EEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhh--hcCceeecccccceeeecccCccccchhhhhhcc
Confidence            58999996 999999999998875 57766543 3322221111  1122222221111          01244555667


Q ss_pred             CCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEeccc
Q 022216          135 DSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSI  183 (301)
Q Consensus       135 ~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~  183 (301)
                       +|+||-|.|...              +..-++.-.+.|+ +.|++|+.
T Consensus        80 -vDvViEcTG~f~--------------~~~~~~~hl~~G~-k~Vi~s~~  112 (172)
T d2czca2          80 -VDIIVDATPGGI--------------GAKNKPLYEKAGV-KAIFQGGE  112 (172)
T ss_dssp             -CSEEEECCSTTH--------------HHHHHHHHHHHTC-EEEECTTS
T ss_pred             -CCEEEECCCCCC--------------CHHHHHHHHHcCC-CEEEECCC
Confidence             999999998531              2223344456675 66666664

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.91  E-value=0.42  Score=37.49  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=30.7

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeC
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRD   99 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~   99 (301)
                      ++++++|+|-|- |.+|.++++.|+++ |.+|+.+...
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence            467999999997 99999999999865 8999887644

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=87.76  E-value=0.26  Score=40.99  Aligned_cols=30  Identities=17%  Similarity=0.050  Sum_probs=27.5

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      |+|.|+ |+-|..+|.+|+++|++|.++-+-
T Consensus         5 VIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           5 AVVIGT-GYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEeCc-CHHHHHHHHHHHHCcCeEEEEecC
Confidence            789996 999999999999999999999763

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=87.47  E-value=0.47  Score=39.41  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=77.0

Q ss_pred             CCeEE-EEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc----cCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           66 QKKIF-VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS----KDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        66 ~~~vl-VtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      +.+|+ .-+|+|.+|..++    +.+.+|+++..+++..+....    ..-.++.++.+|+.+........... +|+||
T Consensus       213 ~~~vlDLycG~G~fsl~La----~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~-~d~vi  287 (358)
T d1uwva2         213 EDRVLDLFCGMGNFTLPLA----TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG-FDKVL  287 (358)
T ss_dssp             TCEEEEESCTTTTTHHHHH----TTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTC-CSEEE
T ss_pred             CceEEEecccccccchhcc----ccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhcc-CceEE
Confidence            34444 6688899888754    567899998877665443221    14468999999987632222222233 89888


Q ss_pred             EccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEecccccccccCCCCCCcchhhcchhhHHHHHHHHHHHHHHH
Q 022216          141 CATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVNRFILISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAEQYIRK  220 (301)
Q Consensus       141 ~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~  220 (301)
                      -.-.-              .|...+++.+.+.+.++|||+|=-            +.       +   ..+- ... +.+
T Consensus       288 lDPPR--------------~G~~~~~~~l~~~~~~~ivYVSCn------------p~-------T---laRD-l~~-l~~  329 (358)
T d1uwva2         288 LDPAR--------------AGAAGVMQQIIKLEPIRIVYVSCN------------PA-------T---LARD-SEA-LLK  329 (358)
T ss_dssp             ECCCT--------------TCCHHHHHHHHHHCCSEEEEEESC------------HH-------H---HHHH-HHH-HHH
T ss_pred             eCCCC--------------ccHHHHHHHHHHcCCCEEEEEeCC------------HH-------H---HHHH-HHH-HHH
Confidence            65311              112346667766778899999852            11       1   1222 222 445


Q ss_pred             cCCcEEEEecCccc
Q 022216          221 SGINYTIIRPGGLR  234 (301)
Q Consensus       221 ~~i~~~~irpg~v~  234 (301)
                      .|+++.-++|-.++
T Consensus       330 ~gy~l~~i~~~D~F  343 (358)
T d1uwva2         330 AGYTIARLAMLDMF  343 (358)
T ss_dssp             TTCEEEEEEEECCS
T ss_pred             CCCeEeEEEEEecC
Confidence            78888888887655

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=86.90  E-value=0.33  Score=38.11  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchh
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKA  103 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~  103 (301)
                      -|+|.|| |--|...|..|+++|.+|.++.+.+...
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            4999998 9999999999999999999998876543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.35  E-value=0.4  Score=36.43  Aligned_cols=70  Identities=17%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEE
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVC  141 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~  141 (301)
                      ++.|++||=.|+..|+   ++..++..|. +|++++.++...+.... ...++.++.+|+.+ .       .+++|+||-
T Consensus        46 dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~-N~~~~~~~~~D~~~-l-------~~~fD~Vi~  113 (197)
T d1ne2a_          46 NIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKR-NCGGVNFMVADVSE-I-------SGKYDTWIM  113 (197)
T ss_dssp             SSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHH-HCTTSEEEECCGGG-C-------CCCEEEEEE
T ss_pred             CCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHH-ccccccEEEEehhh-c-------CCcceEEEe
Confidence            4679999998875542   3334666775 69998887765544332 44678999999876 1       234999998


Q ss_pred             ccC
Q 022216          142 ATG  144 (301)
Q Consensus       142 ~Ag  144 (301)
                      |-.
T Consensus       114 NPP  116 (197)
T d1ne2a_         114 NPP  116 (197)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            853

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=86.27  E-value=0.38  Score=38.34  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=29.8

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEEEeCCc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAGVRDLD  101 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~~r~~~  101 (301)
                      .=|+|.|| |.-|...|..|+++ |++|.++.+.+.
T Consensus        34 ~DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          34 TDVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            34999998 99999999999875 999999998753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.12  E-value=0.42  Score=36.62  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=34.1

Q ss_pred             cccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           63 SVKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        63 ~~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      .+++|+|+|.|+ |.-|-.+|..+++.+.+++.+.|+...
T Consensus        29 ~~~gK~V~VvG~-G~Sa~dia~~~~~~~~~~~~~~~~~~~   67 (235)
T d1w4xa2          29 DFSGQRVGVIGT-GSSGIQVSPQIAKQAAELFVFQRTPHF   67 (235)
T ss_dssp             CCBTCEEEEECC-SHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCCEEEEECC-CccHHHHHHHHHhhhccccccccccce
Confidence            457999999996 899999999999999999998887543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.10  E-value=0.33  Score=40.34  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=26.9

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEe
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVR   98 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r   98 (301)
                      |+|.|+ |.-|..+|.+|+++|.+|.++-+
T Consensus        10 vIVVGs-G~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1          10 ALVIGS-GYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCeEEEEeC
Confidence            889996 99999999999999999999965

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=85.96  E-value=0.42  Score=36.31  Aligned_cols=30  Identities=17%  Similarity=0.155  Sum_probs=27.8

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~   99 (301)
                      |+|.|| |..|...+..+++.|.+|.++.+.
T Consensus         5 vvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGG-GSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEecc
Confidence            789998 999999999999999999998764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=0.29  Score=38.00  Aligned_cols=73  Identities=4%  Similarity=-0.016  Sum_probs=48.4

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc---------------------cCCCCeEEEEccCCC
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS---------------------KDNPSLQIVKADVTE  123 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~---------------------~~~~~~~~~~~Dl~~  123 (301)
                      .+.+||..|+..|  . .+..|++.|++|++++-++...+....                     ....++.++.+|+.+
T Consensus        45 ~~~rvLd~GCG~G--~-~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          45 SGLRVFFPLCGKA--V-EMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CSCEEEETTCTTC--T-HHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCEEEEeCCCCc--H-HHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            5789999998554  3 577889999999999888765443211                     134578888888876


Q ss_pred             ChHhHHHHhcCCCCEEEEccC
Q 022216          124 GSAKLSEAIGDDSEAVVCATG  144 (301)
Q Consensus       124 ~~~~~~~~~~~~~d~Vi~~Ag  144 (301)
                       ..   ....+..|+|+....
T Consensus       122 -l~---~~~~~~fd~i~~~~~  138 (229)
T d2bzga1         122 -LP---RTNIGKFDMIWDRGA  138 (229)
T ss_dssp             -GG---GSCCCCEEEEEESSS
T ss_pred             -cc---ccccCceeEEEEEEE
Confidence             21   111123777876654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.77  E-value=0.33  Score=39.68  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             eEEEEcCCchHHHHHHHHHH-----HCCCeEEEEEeCCch
Q 022216           68 KIFVAGATGSSGKRIVEQLL-----AKGFAVKAGVRDLDK  102 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~-----~~G~~V~~~~r~~~~  102 (301)
                      =|+|.|| |-.|..+|..|+     ++|++|+++.|++..
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4999998 999999999997     479999999887543

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.74  E-value=0.63  Score=33.86  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=28.0

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAG   96 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~   96 (301)
                      +|+++.|.+.+||.|--++..+.+.|.++--+
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l   33 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATL   33 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECCC
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccCCC
Confidence            47889999999999999999999999877644

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.36  Score=38.39  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             cCCeEEEEcCCchHHHHH-----HHHHHHCCCeEEEEEeCCc
Q 022216           65 KQKKIFVAGATGSSGKRI-----VEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~-----~~~l~~~G~~V~~~~r~~~  101 (301)
                      .+++|+|+.|=||+|+.+     +..|+++|++|.+++-++.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            578888888899999876     6888999999999988864

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=85.67  E-value=0.51  Score=39.61  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=24.5

Q ss_pred             CeEEEEcC------CchHH---HHHHHHHHHCCCeEEEEEe
Q 022216           67 KKIFVAGA------TGSSG---KRIVEQLLAKGFAVKAGVR   98 (301)
Q Consensus        67 ~~vlVtGa------tG~iG---~~~~~~l~~~G~~V~~~~r   98 (301)
                      |+||+.+.      +||+|   .+++++|+++|++|+++..
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp   41 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP   41 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence            56666553      47777   5669999999999998864

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.58  E-value=0.62  Score=34.58  Aligned_cols=99  Identities=19%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCeEEEE-EeCCchhhhccccC--CCCeEEEEccCCCChHhHHHHhcC-CCCEEEE
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK-GFAVKAG-VRDLDKAKTTLSKD--NPSLQIVKADVTEGSAKLSEAIGD-DSEAVVC  141 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~-G~~V~~~-~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~  141 (301)
                      .++.|.|. |.+|+..++.|... +.+|+++ ++++++...+....  .....++    .|    +++.+.. ++|+|+-
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~----~~----~~~ll~~~~iD~v~I   72 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH----GS----YESLLEDPEIDALYV   72 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEE----SS----HHHHHHCTTCCEEEE
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeec----Cc----HHHhhhccccceeee
Confidence            47899996 89999999999876 5687765 56555544433211  1122221    22    4444433 4999997


Q ss_pred             ccCCCC---------CCC----CCCceeeehHHHHHHHHHHHHcCC
Q 022216          142 ATGFQP---------GWD----LFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       142 ~Ag~~~---------~~~----~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      +.....         ...    .+.-+..|..-...+++.+++.+.
T Consensus        73 ~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~  118 (184)
T d1ydwa1          73 PLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV  118 (184)
T ss_dssp             CCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred             cccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence            653211         000    122235678888889999888764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.53  E-value=0.4  Score=39.56  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEe
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVR   98 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r   98 (301)
                      |+|.|+ |.-|..+|.+|+++|++|.++-+
T Consensus         7 viIVGs-G~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           7 VVIVGS-GPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEECc-CHHHHHHHHHHhhCCCeEEEEec
Confidence            889996 99999999999999999999854

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=85.35  E-value=0.17  Score=36.52  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=25.6

Q ss_pred             EEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc
Q 022216           70 FVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS  108 (301)
Q Consensus        70 lVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~  108 (301)
                      -+.|+ |.+|+++++.|.+.++.+.+..|++++.+++..
T Consensus         3 gfIG~-G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~   40 (153)
T d2i76a2           3 NFVGT-GTLTRFFLECLKDRYEIGYILSRSIDRARNLAE   40 (153)
T ss_dssp             EEESC-CHHHHHHHHTTC----CCCEECSSHHHHHHHHH
T ss_pred             EEEeC-cHHHHHHHHHHHhCCCEEEEEeCChhhhcchhh
Confidence            35664 999999999886644444577898888776653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.25  E-value=0.29  Score=36.54  Aligned_cols=36  Identities=14%  Similarity=0.127  Sum_probs=31.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCc
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~  101 (301)
                      +++.|+|.|| |..|...|..|++.|.+|+++.|...
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEeecc
Confidence            3578999998 99999999999999999999876543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=85.16  E-value=0.38  Score=39.22  Aligned_cols=31  Identities=16%  Similarity=0.211  Sum_probs=28.6

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|+ |..|...+..|+++|++|+++.+.+
T Consensus        26 VvVIG~-G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGS-GGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             EEEECS-SHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            899997 9999999999999999999997764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.02  E-value=0.71  Score=35.63  Aligned_cols=39  Identities=15%  Similarity=0.078  Sum_probs=32.2

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHHHC--------------------C-CeEEEEEeCCc
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLLAK--------------------G-FAVKAGVRDLD  101 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~~~--------------------G-~~V~~~~r~~~  101 (301)
                      ..+++++|+|.|+ |.++.-+++.|++.                    | -+|+++.|+..
T Consensus        35 ~~~~gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          35 PDLSCDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CCTTSSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ccccCceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            3457999999997 99999999999984                    5 37888888754

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=84.93  E-value=2.1  Score=32.11  Aligned_cols=94  Identities=22%  Similarity=0.398  Sum_probs=59.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC---eEEEEEeCCchhhhccccCCCCeEEEEc-cCCC-----------------Ch
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAKGF---AVKAGVRDLDKAKTTLSKDNPSLQIVKA-DVTE-----------------GS  125 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dl~~-----------------~~  125 (301)
                      ++|.|.|- |+-|..++..|.+.|.   +.+++.-+...+..    ......+..+ +++.                 ..
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~----~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~   75 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEA----SNADVKIQIGENITRGLGAGGRPEIGEQAALESE   75 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHT----CCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCHHHHhc----CCcceEEecccccCCCcccccCchhhHhHHHHHH
Confidence            36889997 9999999999999874   33443333222221    1122222222 1111                 03


Q ss_pred             HhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCC
Q 022216          126 AKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       126 ~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      +.+.+.+.+ .|.||-+||....        +-..++-.+.+.+++.+.
T Consensus        76 ~~I~~~l~~-~d~vfi~AGlGGg--------TGtgaapviA~~ake~g~  115 (194)
T d1w5fa1          76 EKIREVLQD-THMVFITAGFGGG--------TGTGASPVIAKIAKEMGI  115 (194)
T ss_dssp             HHHHHHTTT-CSEEEEEEETTSS--------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcC-CCeEEEEEecCCC--------cccchHHHHHHHHHHcCC
Confidence            678888888 9999999986542        223446678999999875

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.54  E-value=0.83  Score=34.96  Aligned_cols=39  Identities=21%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             hcccCCeEEEEcCCchHHHHHHHHHH--------------------HCCC-eEEEEEeCCc
Q 022216           62 VSVKQKKIFVAGATGSSGKRIVEQLL--------------------AKGF-AVKAGVRDLD  101 (301)
Q Consensus        62 ~~~~~~~vlVtGatG~iG~~~~~~l~--------------------~~G~-~V~~~~r~~~  101 (301)
                      ..+++++|+|.|+ |.++.-+|+.|+                    +.|. +|+++.|+..
T Consensus        35 ~~~~gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          35 PDLSGARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCCSSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             ccccCceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            3457899999998 999999999888                    4565 7888888754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.23  E-value=0.29  Score=35.57  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=26.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKA   95 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~   95 (301)
                      .+|+|+|.|| |.+|..++..+++.|.++..
T Consensus        28 ~gkrVvVIGg-G~~g~d~a~~~~r~G~~~~~   57 (162)
T d1ps9a2          28 VGNKVAIIGC-GGIGFDTAMYLSQPGESTSQ   57 (162)
T ss_dssp             CCSEEEEECC-HHHHHHHHHHHTCCSSCGGG
T ss_pred             cCCceEEEcC-chhHHHHHHHHHHcCCccce
Confidence            4799999998 99999999999999976543

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.13  E-value=3.1  Score=31.53  Aligned_cols=97  Identities=23%  Similarity=0.336  Sum_probs=60.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCC--chhhhccccCCCCeEEEEc-cCCC-----------------
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDL--DKAKTTLSKDNPSLQIVKA-DVTE-----------------  123 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~--~~~~~~~~~~~~~~~~~~~-Dl~~-----------------  123 (301)
                      ...++.|.|- |+-|..++..|.+.|. .|-.+.-+.  ..+...    .....+..+ +++.                 
T Consensus        14 ~~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~----~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e   88 (209)
T d2vapa1          14 TKAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRT----KADKKILIGKKLTRGLGAGGNPKIGEEAAKE   88 (209)
T ss_dssp             TCCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTS----CCSEEEECCTTTTTTBCCTTCHHHHHHHHHH
T ss_pred             cCCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcC----CcchhcccccccccccccccchHHHHHHHHH
Confidence            3568999997 9999999999999875 344443333  222221    112222221 1111                 


Q ss_pred             ChHhHHHHhcCCCCEEEEccCCCCCCCCCCceeeehHHHHHHHHHHHHcCCC
Q 022216          124 GSAKLSEAIGDDSEAVVCATGFQPGWDLFAPWKVDNFGTVNLVEACRKRGVN  175 (301)
Q Consensus       124 ~~~~~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~  175 (301)
                      ..+.+.+.+++ .|.||-+||....        +--.++-.+.+.+++.+.-
T Consensus        89 ~~~~I~~~l~~-~d~vfi~AGlGGG--------TGsgaapvia~~ake~g~l  131 (209)
T d2vapa1          89 SAEEIKAAIQD-SDMVFITCGLGGG--------TGTGSAPVVAEISKKIGAL  131 (209)
T ss_dssp             THHHHHHHHTT-CSEEEEEEETTSS--------HHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHhccC-CCEEEEEEeCCCC--------ccccHHHHHHHHHHHcCCc
Confidence            02578888888 9999999986542        1233456688999998753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.84  E-value=0.4  Score=35.89  Aligned_cols=34  Identities=6%  Similarity=0.023  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      .+.|+|.|| |..|...|..|++.|.+|+++.+..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCCcEEEEEeec
Confidence            578999998 9999999999999999999887543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.80  E-value=0.54  Score=36.07  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             CeEEEEcCCchHHHHHHHHHHHC--CCeEEEEEeCCc
Q 022216           67 KKIFVAGATGSSGKRIVEQLLAK--GFAVKAGVRDLD  101 (301)
Q Consensus        67 ~~vlVtGatG~iG~~~~~~l~~~--G~~V~~~~r~~~  101 (301)
                      ++|.|.|| |--|...|..|.++  |++|+++.+.+.
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            47999997 99999999999876  789999877653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=83.74  E-value=0.39  Score=35.60  Aligned_cols=72  Identities=15%  Similarity=0.169  Sum_probs=46.5

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcccc----------------CCCCeEEEEccCCCChHhH
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLSK----------------DNPSLQIVKADVTEGSAKL  128 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~~----------------~~~~~~~~~~Dl~~~~~~~  128 (301)
                      .+++||..|+.-|  . .+..|+++|++|++++.++...+.....                ......++.+|..+ ....
T Consensus        20 ~~~rvLd~GCG~G--~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-l~~~   95 (201)
T d1pjza_          20 PGARVLVPLCGKS--Q-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA-LTAR   95 (201)
T ss_dssp             TTCEEEETTTCCS--H-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS-STHH
T ss_pred             CCCEEEEecCcCC--H-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc-cccc
Confidence            4789999998544  4 5668888999999999887554432210                13456788888877 2221


Q ss_pred             HHHhcCCCCEEEEcc
Q 022216          129 SEAIGDDSEAVVCAT  143 (301)
Q Consensus       129 ~~~~~~~~d~Vi~~A  143 (301)
                      .  ... .|.|+...
T Consensus        96 ~--~~~-~D~i~~~~  107 (201)
T d1pjza_          96 D--IGH-CAAFYDRA  107 (201)
T ss_dssp             H--HHS-EEEEEEES
T ss_pred             c--ccc-eeEEEEEe
Confidence            1  123 67776543

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.44  E-value=3.1  Score=34.04  Aligned_cols=78  Identities=13%  Similarity=0.038  Sum_probs=51.5

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc-cccCCCCeEEEEccCCCCh--HhHHHHhcCCCCEEE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT-LSKDNPSLQIVKADVTEGS--AKLSEAIGDDSEAVV  140 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~Dl~~~~--~~~~~~~~~~~d~Vi  140 (301)
                      ++|-+||=.+- ..-|-...+.|++.|++|+=+-+... .... ......+-.-+..|+.+++  +.+.+++++ .|+||
T Consensus         4 L~girVld~~~-~~agp~~~~~lad~GA~VikvE~p~~-~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~-aDv~i   80 (359)
T d1x74a1           4 LSGLRVVELAG-IGPGPHAAMILGDLGADVVRIDRPSS-VDGISRDAMLRNRRIVTADLKSDQGLELALKLIAK-ADVLI   80 (359)
T ss_dssp             TTTCEEEEECC-STHHHHHHHHHHHTTCEEEEEECC------CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTT-CSEEE
T ss_pred             CCCCEEEEcCC-chHHHHHHHHHHHhCCEEEEECCCCC-CCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhh-CCEEE
Confidence            35666665553 56688888999999999998754321 1111 1112345677889998832  677778888 99999


Q ss_pred             EccC
Q 022216          141 CATG  144 (301)
Q Consensus       141 ~~Ag  144 (301)
                      +|--
T Consensus        81 ~n~~   84 (359)
T d1x74a1          81 EGYR   84 (359)
T ss_dssp             ECSC
T ss_pred             ecCC
Confidence            9863

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=83.23  E-value=0.91  Score=36.68  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=22.5

Q ss_pred             CeEEEEcCCchHHH-----HHHHHHHHCCCeEEEEEeC
Q 022216           67 KKIFVAGATGSSGK-----RIVEQLLAKGFAVKAGVRD   99 (301)
Q Consensus        67 ~~vlVtGatG~iG~-----~~~~~l~~~G~~V~~~~r~   99 (301)
                      |+|+|++|.-| |.     +++++|.++|++|..+...
T Consensus         1 kkili~~~GtG-GHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcH-HHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            56777764212 43     5889999999999887644

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.10  E-value=0.86  Score=34.84  Aligned_cols=76  Identities=9%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             cCCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhcc----ccCCCCeEEEEccCCCChHhHHHHhcCCCCEEE
Q 022216           65 KQKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTL----SKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVV  140 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi  140 (301)
                      .+++||-.|+..|--..+..++.....+|+.++.+++..+...    .....++.++.+|..+.    ...-.. +|.|+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~----~~~~~~-fD~I~  149 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG----VPEFSP-YDVIF  149 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CGGGCC-EEEEE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHc----cccccc-hhhhh
Confidence            4789998876554444444344444568998888765443322    11346788888887651    111234 89999


Q ss_pred             EccCC
Q 022216          141 CATGF  145 (301)
Q Consensus       141 ~~Ag~  145 (301)
                      .+++.
T Consensus       150 ~~~~~  154 (213)
T d1dl5a1         150 VTVGV  154 (213)
T ss_dssp             ECSBB
T ss_pred             hhccH
Confidence            88764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.10  E-value=0.45  Score=38.74  Aligned_cols=32  Identities=25%  Similarity=0.228  Sum_probs=28.8

Q ss_pred             eEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           68 KIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        68 ~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      =|+|.|+ |..|...+.+++++|.+|+++.+.+
T Consensus        21 DVvVIGa-G~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGA-GSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3899997 9999999999999999999987654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=82.87  E-value=1.3  Score=31.94  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             CeEEEEcCCchHHHH-HHHHHHHC-CCeEEEE-EeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcCCCCEEEEcc
Q 022216           67 KKIFVAGATGSSGKR-IVEQLLAK-GFAVKAG-VRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEAVVCAT  143 (301)
Q Consensus        67 ~~vlVtGatG~iG~~-~~~~l~~~-G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~Vi~~A  143 (301)
                      ++|.|.|. |.+|.. ....|.+. +.+++++ ++++++..++....  +     .+..+   .+.+...+ +|+|+.+.
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~--~-----~~~~~---~~~~l~~~-~D~V~I~t   69 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW--R-----IPYAD---SLSSLAAS-CDAVFVHS   69 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH--T-----CCBCS---SHHHHHTT-CSEEEECS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc--c-----ccccc---cchhhhhh-cccccccc
Confidence            57899995 899975 45566554 5777765 46666555443211  1     22333   23444567 99998775


Q ss_pred             CCCC-----------CCC--CCCceeeehHHHHHHHHHHHHcCC
Q 022216          144 GFQP-----------GWD--LFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       144 g~~~-----------~~~--~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      ....           ...  .+.-+..|..-...+++++++.+.
T Consensus        70 p~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~  113 (164)
T d1tlta1          70 STASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKL  113 (164)
T ss_dssp             CTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred             cchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCC
Confidence            3211           000  112235677778888888888764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.60  E-value=0.79  Score=37.17  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             ccCCeEEEEcCCchHHHHHHHHHHHCCC-eEEEEEeCCchhh--h--ccccCCCCeEEEEccCCCChHhHHHHhcCCCCE
Q 022216           64 VKQKKIFVAGATGSSGKRIVEQLLAKGF-AVKAGVRDLDKAK--T--TLSKDNPSLQIVKADVTEGSAKLSEAIGDDSEA  138 (301)
Q Consensus        64 ~~~~~vlVtGatG~iG~~~~~~l~~~G~-~V~~~~r~~~~~~--~--~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~  138 (301)
                      .++++||-.|+..|+   ++..++++|+ +|+++..++.-..  +  .......++.++.+|+.+ ..   .-.. ++|+
T Consensus        34 ~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~-l~---~~~~-~~D~  105 (311)
T d2fyta1          34 FKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEE-VH---LPVE-KVDV  105 (311)
T ss_dssp             TTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT-SC---CSCS-CEEE
T ss_pred             CCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHH-hc---Cccc-cceE
Confidence            468999999986544   4556777886 7888887653221  1  111245789999999987 21   1112 4899


Q ss_pred             EEEc
Q 022216          139 VVCA  142 (301)
Q Consensus       139 Vi~~  142 (301)
                      |+..
T Consensus       106 Ivse  109 (311)
T d2fyta1         106 IISE  109 (311)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.55  E-value=0.65  Score=35.18  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|| |..|...+..+++.|.+|.++.+..
T Consensus         6 vvVIGg-GpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGG-GPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            889998 9999999999999999999987653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.39  E-value=1.8  Score=35.03  Aligned_cols=74  Identities=11%  Similarity=0.064  Sum_probs=45.4

Q ss_pred             cCCeEE-EEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhccc-----c-CCCCeEEEEccCCCChHhHHHHhcCCCC
Q 022216           65 KQKKIF-VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTTLS-----K-DNPSLQIVKADVTEGSAKLSEAIGDDSE  137 (301)
Q Consensus        65 ~~~~vl-VtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~~~-----~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d  137 (301)
                      ++++|| +..++|+++.+    +++.|++|+.++.+...++....     . ...++.++..|+.+..+...+.-. +.|
T Consensus       132 ~~~rVLdlf~~tG~~sl~----aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~-~fD  206 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLV----AAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGS-TYD  206 (309)
T ss_dssp             SCCEEEEETCTTCHHHHH----HHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTC-CBS
T ss_pred             CCCeEEEecCCCcHHHHH----HHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCC-CCC
Confidence            467888 55666766654    34678999988777655443221     1 234689999988762122222223 499


Q ss_pred             EEEEcc
Q 022216          138 AVVCAT  143 (301)
Q Consensus       138 ~Vi~~A  143 (301)
                      +||..-
T Consensus       207 ~IilDP  212 (309)
T d2igta1         207 IILTDP  212 (309)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.22  E-value=0.46  Score=37.59  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             CCeEEEEcCCchHHHHH-----HHHHHHCCCeEEEEEeCCc
Q 022216           66 QKKIFVAGATGSSGKRI-----VEQLLAKGFAVKAGVRDLD  101 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~-----~~~l~~~G~~V~~~~r~~~  101 (301)
                      +|+|.|+| =||+|+.+     +..|++.|++|.+++-++.
T Consensus         1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46888998 89999755     4588889999999998863

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=82.14  E-value=2.7  Score=30.73  Aligned_cols=100  Identities=16%  Similarity=0.096  Sum_probs=57.1

Q ss_pred             cCCeEEEEcCCchHHHH-HHHHHHHCC--CeEEEE-EeCCchhhhccccCCCCeEEEEccCCCChHhHHHHhcC-CCCEE
Q 022216           65 KQKKIFVAGATGSSGKR-IVEQLLAKG--FAVKAG-VRDLDKAKTTLSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAV  139 (301)
Q Consensus        65 ~~~~vlVtGatG~iG~~-~~~~l~~~G--~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~V  139 (301)
                      +..+|.|.|. |.+|+. ....+.+.+  .+++++ ++++++.+.+....  +...+.   +|    +++.+.. ++|+|
T Consensus         2 kkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~--~~~~~~---~~----~~ell~~~~id~v   71 (181)
T d1zh8a1           2 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV--GNPAVF---DS----YEELLESGLVDAV   71 (181)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH--SSCEEE---SC----HHHHHHSSCCSEE
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc--ccccee---ee----eecccccccccee
Confidence            4568999995 999986 466776644  467655 55555554433211  111111   23    4445543 49999


Q ss_pred             EEccCCCCC---------CC----CCCceeeehHHHHHHHHHHHHcCC
Q 022216          140 VCATGFQPG---------WD----LFAPWKVDNFGTVNLVEACRKRGV  174 (301)
Q Consensus       140 i~~Ag~~~~---------~~----~~~~~~~N~~g~~~l~~a~~~~~~  174 (301)
                      +.+.....-         ..    -+.-+..|..-...+.+++++.+.
T Consensus        72 ~I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~  119 (181)
T d1zh8a1          72 DLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEK  119 (181)
T ss_dssp             EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSS
T ss_pred             eccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCC
Confidence            876532110         00    012235677888888888888764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.09  E-value=0.79  Score=34.51  Aligned_cols=74  Identities=15%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             EEcCCchHHHHHHHHHHHCCCeEEEEEeCCchhhhc---cccCCCCeEEEEccCCCChHhHHHHhcC-CCCEEEEccCCC
Q 022216           71 VAGATGSSGKRIVEQLLAKGFAVKAGVRDLDKAKTT---LSKDNPSLQIVKADVTEGSAKLSEAIGD-DSEAVVCATGFQ  146 (301)
Q Consensus        71 VtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~d~Vi~~Ag~~  146 (301)
                      +|-|+|+.-.++.+.+ . +.+|+++++++..++..   +.....++.++.++..+ ...+.+.+.. ++|.|+.-.|+.
T Consensus        30 ~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~-~~~~~~~~~~~~vdgIl~DlGvS  106 (192)
T d1m6ya2          30 CTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE-ADFLLKTLGIEKVDGILMDLGVS  106 (192)
T ss_dssp             TTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG-HHHHHHHTTCSCEEEEEEECSCC
T ss_pred             ecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccccccccchhHHHhh-HHHHHHHcCCCCcceeeeccchh
Confidence            6777788777777765 3 46899999998765432   22245789999999988 6666565542 599998888875


Q ss_pred             C
Q 022216          147 P  147 (301)
Q Consensus       147 ~  147 (301)
                      .
T Consensus       107 s  107 (192)
T d1m6ya2         107 T  107 (192)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=82.04  E-value=0.7  Score=33.87  Aligned_cols=31  Identities=16%  Similarity=0.259  Sum_probs=28.0

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|| |..|...+..+.+.|.+|.++.++.
T Consensus         4 ViIIGg-GpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           4 VLIVGS-GPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCeEEEEEEec
Confidence            789998 9999999999999999999987653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.76  E-value=0.51  Score=36.18  Aligned_cols=34  Identities=24%  Similarity=0.115  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCC-------CeEEEEEeCC
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKG-------FAVKAGVRDL  100 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G-------~~V~~~~r~~  100 (301)
                      .++|+|.|| |--|...|..|+++|       ++|.+..+.+
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            368999997 999999999999988       4799888765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.03  E-value=0.58  Score=35.82  Aligned_cols=35  Identities=29%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCchHHH-----HHHHHHHHCCCeEEEEEeCC
Q 022216           66 QKKIFVAGATGSSGK-----RIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        66 ~~~vlVtGatG~iG~-----~~~~~l~~~G~~V~~~~r~~  100 (301)
                      +|+|.|+++-||+|+     +++..|++.|.+|.+++-++
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            478999999999996     45667888999999987664

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.84  E-value=4  Score=27.86  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      ..+|+|-|-||..|+.-+++.++-|-+|++-. ++.+
T Consensus         7 ~trVivQGiTG~~G~~ht~~m~~yGT~iVaGV-tPgk   42 (121)
T d1oi7a1           7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGV-TPGK   42 (121)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEE-CTTC
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhCCceEeee-ecCC
Confidence            45899999999999999999999999998744 4443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=80.58  E-value=0.73  Score=37.44  Aligned_cols=31  Identities=23%  Similarity=0.174  Sum_probs=28.1

Q ss_pred             EEEEcCCchHHHHHHHHHHHCCCeEEEEEeCC
Q 022216           69 IFVAGATGSSGKRIVEQLLAKGFAVKAGVRDL  100 (301)
Q Consensus        69 vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~  100 (301)
                      |+|.|+ |.-|...|..++++|.+|+++...+
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEecCC
Confidence            899997 9999999999999999999987654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.40  E-value=0.47  Score=35.87  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=25.7

Q ss_pred             CeEEEEcCCchHHH-----HHHHHHHHCCCeEEEEE
Q 022216           67 KKIFVAGATGSSGK-----RIVEQLLAKGFAVKAGV   97 (301)
Q Consensus        67 ~~vlVtGatG~iG~-----~~~~~l~~~G~~V~~~~   97 (301)
                      |+++|||-..|+|+     .++..|+++|++|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            78999997669996     45678889999999875

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=80.17  E-value=4.3  Score=27.62  Aligned_cols=36  Identities=36%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCeEEEEEeCCch
Q 022216           66 QKKIFVAGATGSSGKRIVEQLLAKGFAVKAGVRDLDK  102 (301)
Q Consensus        66 ~~~vlVtGatG~iG~~~~~~l~~~G~~V~~~~r~~~~  102 (301)
                      ..+|+|-|-||..|+.-+++.++-|-+|++-. ++.+
T Consensus         6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGV-tPgk   41 (119)
T d2nu7a1           6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGV-TPGK   41 (119)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEE-CTTC
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhCCceEEEE-ccCC
Confidence            56899999999999999999999999998744 4444