Citrus Sinensis ID: 022224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLATFFCFLE
cHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEccccccccEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHcHHHHHHccc
cHHHHHHHHHHHHHHHHHHHcccccccccEEEccccHHHHcccccccccccccccccccEEEEEEEcccccHcHHHHHHHHHHHHHHHHcccccccEEEEEccHcccccccccccEEEEcccccccccccccccccccccHHHHHHHHHcccccccccccEEEEcccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHccccccccEEEEEEccccccccccEcccccccccccccccccccHHEHHHHHHcccccccccHHHHHHHHEccc
MTRLASGVLITLLVALAGiadgsrdiagdilklpsEAYRffhnggggakvnddddsvgTRWAVLLAGSngfwnyrhQADICHAYQLLrkgglkdenIIVFMyddiafneenprpgviinhphgddvykgvpkdytgedvtvENFFAVILGNktaltggsgkvvdsgpndhififysdhggpgvlgmptsryIYADELIDVLKKKHASGNYKSLVFYLEACesgsifegllpeglniyattasnaeesswgtycpgeipgpppeystclgdlySIAWMEDRYDNIYDFIYFTLATFFCFLE
MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLATFFCFLE
MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLATFFCFLE
*****SGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLATFFCFL*
***LASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFF**************SVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTA**********SGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLATFFCFLE
MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLATFFCFLE
MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFH*************SVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTA*TGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLATFFCFLE
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iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRYDNIYDFIYFTLATFFCFLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
P49043 494 Vacuolar-processing enzym no no 0.93 0.564 0.989 1e-162
P49044 493 Vacuolar-processing enzym N/A no 0.906 0.551 0.730 1e-116
P49047 478 Vacuolar-processing enzym yes no 0.876 0.550 0.727 1e-116
O24325 484 Vacuolar-processing enzym N/A no 0.81 0.502 0.773 1e-115
Q39119 494 Vacuolar-processing enzym no no 0.82 0.497 0.820 1e-113
P49042 497 Vacuolar-processing enzym N/A no 0.76 0.458 0.763 1e-106
P49045 495 Vacuolar-processing enzym no no 0.826 0.501 0.684 1e-104
P49046 475 Legumain OS=Canavalia ens N/A no 0.856 0.541 0.652 1e-103
Q39044 486 Vacuolar-processing enzym no no 0.766 0.473 0.713 1e-100
O24326 493 Vacuolar-processing enzym N/A no 0.853 0.519 0.645 4e-99
>sp|P49043|VPE_CITSI Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1 Back     alignment and function desciption
 Score =  571 bits (1471), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/279 (98%), Positives = 277/279 (99%)

Query: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60
           MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR
Sbjct: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60

Query: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120
           WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH
Sbjct: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120

Query: 121 PHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180
           PHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG
Sbjct: 121 PHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180

Query: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 240
           PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATT
Sbjct: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATT 240

Query: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED 279
           ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED
Sbjct: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED 279
Asparagine-specific endopeptidase that may be involved in processing of proteins targeted to vacuoles that accumulate during ethylene-regulated processes such as flower opening and flavedo degreening.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|P49044|VPE_VICSA Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1 Back     alignment and function description
>sp|P49047|VPEA_ARATH Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2 Back     alignment and function description
>sp|O24325|VPE1_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1 Back     alignment and function description
>sp|Q39119|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2 Back     alignment and function description
>sp|P49042|VPE_RICCO Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|P49045|VPE_SOYBN Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P49046|LEGU_CANEN Legumain OS=Canavalia ensiformis PE=1 SV=1 Back     alignment and function description
>sp|Q39044|VPEB_ARATH Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3 Back     alignment and function description
>sp|O24326|VPE2_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
1351408 494 RecName: Full=Vacuolar-processing enzyme 0.93 0.564 0.989 1e-160
237861979 494 vacuolar processing enzyme [Malus hupehe 0.926 0.562 0.806 1e-132
255550848 492 Vacuolar-processing enzyme precursor, pu 0.91 0.554 0.801 1e-131
449494401 493 PREDICTED: vacuolar-processing enzyme-li 0.92 0.559 0.803 1e-130
449450336 493 PREDICTED: vacuolar-processing enzyme-li 0.92 0.559 0.803 1e-129
233142300 493 vacuolar processing enzyme a [Populus to 0.923 0.561 0.827 1e-129
224141591 489 predicted protein [Populus trichocarpa] 0.91 0.558 0.820 1e-128
224088921 493 predicted protein [Populus trichocarpa] 0.923 0.561 0.820 1e-128
225429442 493 PREDICTED: vacuolar-processing enzyme [V 0.886 0.539 0.802 1e-126
356514571 484 PREDICTED: vacuolar-processing enzyme-li 0.876 0.543 0.797 1e-125
>gi|1351408|sp|P49043.1|VPE_CITSI RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi|633185|emb|CAA87720.1| cystein proteinase (by similarity) [Citrus sinensis] gi|1588548|prf||2208463A vascular processing protease Back     alignment and taxonomy information
 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/279 (98%), Positives = 277/279 (99%)

Query: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60
           MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR
Sbjct: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60

Query: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120
           WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH
Sbjct: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120

Query: 121 PHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180
           PHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG
Sbjct: 121 PHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180

Query: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 240
           PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATT
Sbjct: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATT 240

Query: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED 279
           ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED
Sbjct: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED 279

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|237861979|gb|ACR24644.1| vacuolar processing enzyme [Malus hupehensis var. mengshanensis] Back     alignment and taxonomy information
>gi|255550848|ref|XP_002516472.1| Vacuolar-processing enzyme precursor, putative [Ricinus communis] gi|223544292|gb|EEF45813.1| Vacuolar-processing enzyme precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449494401|ref|XP_004159537.1| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449450336|ref|XP_004142919.1| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|233142300|gb|ACQ91103.1| vacuolar processing enzyme a [Populus tomentosa] Back     alignment and taxonomy information
>gi|224141591|ref|XP_002324151.1| predicted protein [Populus trichocarpa] gi|222865585|gb|EEF02716.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224088921|ref|XP_002308580.1| predicted protein [Populus trichocarpa] gi|222854556|gb|EEE92103.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225429442|ref|XP_002276759.1| PREDICTED: vacuolar-processing enzyme [Vitis vinifera] gi|296081609|emb|CBI20614.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356514571|ref|XP_003525979.1| PREDICTED: vacuolar-processing enzyme-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2123782 494 GAMMA-VPE "gamma vacuolar proc 0.91 0.552 0.775 1.1e-117
TAIR|locus:2043510 478 ALPHA-VPE "alpha-vacuolar proc 0.82 0.514 0.779 1.3e-109
TAIR|locus:2026242 486 BETA-VPE "beta vacuolar proces 0.763 0.471 0.716 1.1e-94
TAIR|locus:2087625 466 DELTA-VPE "delta vacuolar proc 0.8 0.515 0.636 3.3e-86
ZFIN|ZDB-GENE-021030-1 438 lgmn "legumain" [Danio rerio ( 0.76 0.520 0.514 2e-65
RGD|619832 435 Lgmn "legumain" [Rattus norveg 0.756 0.521 0.525 6.7e-65
UNIPROTKB|Q9R0J8 435 Lgmn "Legumain" [Rattus norveg 0.756 0.521 0.525 6.7e-65
UNIPROTKB|Q86TV2 372 LGMN "Legumain" [Homo sapiens 0.753 0.607 0.512 6e-64
UNIPROTKB|Q86TV3 376 LGMN "Full-length cDNA clone C 0.753 0.601 0.512 6e-64
UNIPROTKB|Q99538 433 LGMN "Legumain" [Homo sapiens 0.753 0.521 0.512 6e-64
TAIR|locus:2123782 GAMMA-VPE "gamma vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 217/280 (77%), Positives = 241/280 (86%)

Query:     1 MTRLASGV-LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGT 59
             MTR++ GV L  LLV+L  ++  +R    D++KLPS+A RFF         NDDD + GT
Sbjct:     5 MTRVSVGVVLFVLLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGT 58

Query:    60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIIN 119
             RWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN
Sbjct:    59 RWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIIN 118

Query:   120 HPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHG 179
              PHG DVY+GVPKDYTG+DV V+N FAVILG+KTA+ GGSGKVVDSGPNDHIFIFYSDHG
Sbjct:   119 SPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHG 178

Query:   180 GPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYAT 239
             GPGVLGMPTS Y+YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLPEGLNIYAT
Sbjct:   179 GPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYAT 238

Query:   240 TASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED 279
             TASNAEESSWGTYCPGE P PPPEY TCLGDLYS+AWMED
Sbjct:   239 TASNAEESSWGTYCPGEEPSPPPEYETCLGDLYSVAWMED 278
GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0000323 "lytic vacuole" evidence=IDA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0006624 "vacuolar protein processing" evidence=ISS
TAIR|locus:2043510 ALPHA-VPE "alpha-vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026242 BETA-VPE "beta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087625 DELTA-VPE "delta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021030-1 lgmn "legumain" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|619832 Lgmn "legumain" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9R0J8 Lgmn "Legumain" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q86TV2 LGMN "Legumain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q86TV3 LGMN "Full-length cDNA clone CS0DB001YK19 of Neuroblastoma of Homo sapiens (human)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q99538 LGMN "Legumain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P49047VPEA_ARATH3, ., 4, ., 2, 2, ., -0.72750.87660.5502yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.766
3rd Layer3.4.22.340.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
pfam01650258 pfam01650, Peptidase_C13, Peptidase C13 family 1e-138
COG5206 382 COG5206, GPI8, Glycosylphosphatidylinositol transa 3e-26
>gnl|CDD|216627 pfam01650, Peptidase_C13, Peptidase C13 family Back     alignment and domain information 
 Score =  390 bits (1005), Expect = e-138
 Identities = 151/220 (68%), Positives = 178/220 (80%), Gaps = 8/220 (3%)

Query: 60  RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIIN 119
            WAVL+AGSNG++NYRHQAD+CHAYQLL+K G+KDENIIV MYDDIA N ENP PG I N
Sbjct: 1   LWAVLVAGSNGYYNYRHQADVCHAYQLLKKFGIKDENIIVMMYDDIANNPENPFPGKIFN 60

Query: 120 HPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHG 179
            P+G DVYKGVP DYTG DVT  NF AV+LG+K+AL  GSGKV+ SGPND++FI+++DHG
Sbjct: 61  KPNGTDVYKGVPIDYTGNDVTPRNFLAVLLGDKSALK-GSGKVLKSGPNDNVFIYFTDHG 119

Query: 180 GPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYAT 239
            PGVLG P   Y+YA +L + LKK HA G YK LVFY+EACESGS+FEG LP+ +NIYAT
Sbjct: 120 APGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYVEACESGSMFEG-LPKDINIYAT 178

Query: 240 TASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMED 279
           TA+NA+ESSWGTYC      P PE  TCLGDL+S+ WMED
Sbjct: 179 TAANADESSWGTYC------PDPEDGTCLGDLFSVNWMED 212

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258
>gnl|CDD|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
KOG1348 477 consensus Asparaginyl peptidases [Posttranslationa 100.0
PF01650256 Peptidase_C13: Peptidase C13 family; InterPro: IPR 100.0
KOG1349309 consensus Gpi-anchor transamidase [Posttranslation 100.0
COG5206 382 GPI8 Glycosylphosphatidylinositol transamidase (GP 100.0
PF00656248 Peptidase_C14: Caspase domain; InterPro: IPR011600 99.18
KOG1546362 consensus Metacaspase involved in regulation of ap 98.65
smart00115241 CASc Caspase, interleukin-1 beta converting enzyme 96.5
cd00032243 CASc Caspase, interleukin-1 beta converting enzyme 96.3
PF14538154 Raptor_N: Raptor N-terminal CASPase like domain 94.33
PF12770287 CHAT: CHAT domain 90.69
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-107  Score=777.97  Aligned_cols=247  Identities=72%  Similarity=1.263  Sum_probs=235.3

Q ss_pred             CChhhhhcccCCCCCCCcCCCCCCCCCeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCC
Q 022224           33 LPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENP  112 (300)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVLVagS~gw~NYRHqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np  112 (300)
                      +|+-...|++|.       ++++.+|++||||||||+||||||||||||||||+||++|+|+||||||||||||+||+||
T Consensus        26 ~~~la~~~~~p~-------d~~ddggt~waVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NP   98 (477)
T KOG1348|consen   26 LPLLASGFARPA-------DDDDDGGTRWAVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENP   98 (477)
T ss_pred             CccccccccCcC-------cCCccCceeEEEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCC
Confidence            444456677762       2233348999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEeeCCCCCcccCCcCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCCCcccCCCCCCc
Q 022224          113 RPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYI  192 (300)
Q Consensus       113 ~pG~i~n~p~g~dvY~gv~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~g~l~fpd~~~L  192 (300)
                      +||+|||+|+|+|||+||+|||||++||++||++||+|++++++||||||++|+|||||||||+||||||.|+||+++.|
T Consensus        99 rpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l  178 (477)
T KOG1348|consen   99 RPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDL  178 (477)
T ss_pred             CCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCceEEEEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCcccchhhHH
Q 022224          193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY  272 (300)
Q Consensus       193 ~a~dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe~llp~~~NV~~iTASn~~ESSys~yc~~~~~~~~~~~~tcLgD~f  272 (300)
                      +++||+++|++||+.++||+||||+|||||||||+++||+++||||+||||+.||||+||||+++|+||+++.|||||+|
T Consensus       179 ~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDly  258 (477)
T KOG1348|consen  179 YAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLY  258 (477)
T ss_pred             hHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccch
Q 022224          273 SIAWMEDRYDNIYD  286 (300)
Q Consensus       273 Sv~wme~~~~~~~~  286 (300)
                      ||+||||||.|+..
T Consensus       259 SV~WmeDSd~hdL~  272 (477)
T KOG1348|consen  259 SVNWMEDSDVHDLK  272 (477)
T ss_pred             eeeeeccCccccch
Confidence            99999999988753

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues Back     alignment and domain information
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) Back     alignment and domain information
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain Back     alignment and domain information
>PF12770 CHAT: CHAT domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
3bij_A285 Uncharacterized protein GSU0716; alpha-beta protei 99.49
4af8_A367 Metacaspase MCA2; hydrolase, cysteine peptidase, c 99.37
4f6o_A350 Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 99.32
3uoa_B 390 Mucosa-associated lymphoid tissue lymphoma transl 98.7
4ehd_A277 Caspase-3; caspase, apoptosis, allosteric inhibiti 95.88
2j32_A250 Caspase-3; Pro-caspase3, thiol protease, hydrolase 95.59
1m72_A272 Caspase-1; caspase, cysteine protease, hydrolase-h 95.32
2h54_A178 Caspase-1; allosteric site, dimer interface, hydro 95.2
3sir_A259 Caspase; hydrolase; 2.68A {Drosophila melanogaster 95.16
3h11_B271 Caspase-8; cell death, apoptosis, caspase, alterna 94.97
3od5_A278 Caspase-6; caspase domain, apoptotic protease, hyd 94.83
1f1j_A305 Caspase-7 protease; caspase-7, cysteine protease, 94.78
3e4c_A302 Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna 94.49
2nn3_C310 Caspase-1; cysteine protease, hydrolase; 3.00A {Sp 94.1
1nw9_B277 Caspase 9, apoptosis-related cysteine protease; XI 93.39
2fp3_A316 Caspase NC; apoptosis, initiator caspase activatio 92.84
1pyo_A167 Caspase-2; apoptosis, caspase, alpha-beta, thiol p 90.49
2dko_A146 Caspase-3; low barrier hydrogen bond, caspase, dru 85.94
1qtn_A164 Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst 83.04
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca} Back     alignment and structure
Probab=99.49  E-value=9.4e-14  Score=128.55  Aligned_cols=158  Identities=16%  Similarity=0.200  Sum_probs=114.4

Q ss_pred             CCeeEEEEeccCC----CCC----ch-hhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCcccC
Q 022224           58 GTRWAVLLAGSNG----FWN----YR-HQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYK  128 (300)
Q Consensus        58 ~~~wAVLVagS~g----w~N----YR-HqADv~~~YqiLk~~GipdenIIlmmyDDiA~np~Np~pG~i~n~p~g~dvY~  128 (300)
                      +++||+||+-+++    |.+    -+ =..|+..+.++|++.|++   |++++-+                         
T Consensus         2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf~---v~~l~~~-------------------------   53 (285)
T 3bij_A            2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFA---VTTLMTK-------------------------   53 (285)
T ss_dssp             CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCE---EEEEEGG-------------------------
T ss_pred             CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCCc---eEEecCC-------------------------
Confidence            4789999998874    311    11 248999999999999997   6666522                         


Q ss_pred             CcCccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEEecCCCC-------------CcccCCCCCCcCHH
Q 022224          129 GVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------------GVLGMPTSRYIYAD  195 (300)
Q Consensus       129 gv~iDY~g~~VT~~nfl~VL~G~~~~~~~~s~kvL~S~~~D~VFIY~tgHGg~-------------g~l~fpd~~~L~a~  195 (300)
                               +.|.+|+++.|..-          +-+..++|.+||||+|||..             ++|...|.. |..+
T Consensus        54 ---------~~t~~~i~~al~~l----------~~~~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~~-i~~~  113 (285)
T 3bij_A           54 ---------AATRAKVIDAIGKA----------AKALGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDGE-LIDD  113 (285)
T ss_dssp             ---------GCCHHHHHHHHHHH----------HHHCCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSSE-EEHH
T ss_pred             ---------ccCHHHHHHHHHHH----------HHhCCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCCC-ccHH
Confidence                     15888998888621          11346789999999999962             355555554 7788


Q ss_pred             HHHHHHHHHHHcCCCceEEEEeccccccccccc----------------------cCC----------------------
Q 022224          196 ELIDVLKKKHASGNYKSLVFYLEACESGSIFEG----------------------LLP----------------------  231 (300)
Q Consensus       196 dL~~~L~~M~~~~~YkklVf~vEAC~SGSmfe~----------------------llp----------------------  231 (300)
                      +|.+.|+.+.   +-+++++++|||+||++.+.                      .+|                      
T Consensus       114 ~l~~~l~~l~---~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  190 (285)
T 3bij_A          114 ELYALLGKFA---AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKT  190 (285)
T ss_dssp             HHHHHHTTSC---SSCEEEEEEECCCCCCHHHHHHTTC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHC
T ss_pred             HHHHHHHhcc---CCCeEEEEEecCCCCccccccccccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhc
Confidence            9999987762   35789999999999998762                      011                      


Q ss_pred             -------CCCcEEEEeecCCCCccccccCCCCCCCCCCCcccchhhHHHHHHHHhhh
Q 022224          232 -------EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDRY  281 (300)
Q Consensus       232 -------~~~NV~~iTASn~~ESSys~yc~~~~~~~~~~~~tcLgD~fSv~wme~~~  281 (300)
                             ...++++++|+.++|.|+-.-          .     ..+|+.+.++-..
T Consensus       191 ~~~~~~~~~~~~i~lsa~~~~q~A~e~~----------~-----~G~FT~aLl~~L~  232 (285)
T 3bij_A          191 KKVDLADVKASILLISGCQDNQLSQDGA----------F-----NGAFTGQLLRVWK  232 (285)
T ss_dssp             CCCCTTTCSSEEEEEESSCTTSCCEECS----------S-----SCHHHHHHHHHHG
T ss_pred             ccccccCCCCCEEEEEeCCCCccccccc----------c-----CCHHHHHHHHHHh
Confidence                   123689999999999998531          1     2689999987544
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A Back     alignment and structure
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Back     alignment and structure
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A* Back     alignment and structure
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A Back     alignment and structure
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A Back     alignment and structure
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B Back     alignment and structure
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ... Back     alignment and structure
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A Back     alignment and structure
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B* Back     alignment and structure
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B* Back     alignment and structure
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A* Back     alignment and structure
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens} Back     alignment and structure
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda} Back     alignment and structure
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A Back     alignment and structure
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster} Back     alignment and structure
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A Back     alignment and structure
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ... Back     alignment and structure
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
g1qtn.1242 Caspase-8 {Human (Homo sapiens) [TaxId: 9606]} 98.19
d1nw9b_277 Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} 97.88
g1pyo.1257 Caspase-2 {Human (Homo sapiens) [TaxId: 9606]} 97.41
g1sc3.1261 Interleukin-1beta converting enzyme (a cysteine pr 97.39
d1m72a_256 Caspase-1 {Fall armyworm (Spodoptera frugiperda) [ 97.37
g1nme.1238 Apopain (caspase-3, cpp32) {Human (Homo sapiens) [ 96.81
d1f1ja_245 Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} 96.4
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Back     information, alignment and structure
>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure