Citrus Sinensis ID: 022229

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVLPLSFGYFL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccEEEEEcccEEEEEEEccccccEEEEEEEEccccccccccccccccHHHHHHHHHccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccHHHHHHHHHHHHccccccccEEEEEEcccEEEEEEcccccccEEEEEEEEccccHHHHHHHHHHccHHHHHHHHHcccEEEEcccccccEEEEEEEHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEEEccccEEEEEEEEEEcccccEEHHHHHHHHHHHHHHHHHHcccccEEEccccccHHcccccccccccEEEEEEEEcHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccc
Coil and Loop (DISEMBL)
MLLLQSHSRFLLEALLNRVQnvdkatevdyhwvefddVRYHVQVTMKNPHIVLLSvslpvpppetifigglpfGAIEAIKAAYGNvvqildpprdgfnltlklnlsklppneenKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVhrpkesfflipqaekvtvvfpmrfndsIDTVLATSFLQEFVEARRTaglnnaplcmwssspplelkgvpsetlsanagfVTFVIfprhvegkkldrtVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVLplsfgyfl
Flexible Loop (DISEMBL)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVvlplsfgyfl
Low Complexity Region (SEG)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIvllsvslpvpppETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVLPLSFGYFL
Disordered region (IsUnstruct)
*******SRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKL*****NKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS***LELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVLPLSFGYF*
Disordered Region (DISOPRED)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVL*****************LVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGL***PLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVLPLSFGYFL
Disordered Region (DISEMBL)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVLPLSFGYFL
Disordered Region (DISPRO)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVLPLSFGYFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVLPLSFGYFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
O96623	293	Actin-related protein 2/3	yes	no	0.893	0.914	0.337	8e-39
Q8WTM6	301	Probable actin-related pr	yes	no	0.916	0.913	0.298	1e-34
O14241	317	Actin-related protein 2/3	yes	no	0.933	0.883	0.294	1e-33
Q5R5Z5	300	Actin-related protein 2/3	yes	no	0.906	0.906	0.300	1e-31
O15144	300	Actin-related protein 2/3	yes	no	0.906	0.906	0.300	1e-31
Q3MHR7	300	Actin-related protein 2/3	yes	no	0.906	0.906	0.300	1e-31
P85970	300	Actin-related protein 2/3	yes	no	0.906	0.906	0.300	1e-31
P53731	342	Actin-related protein 2/3	yes	no	0.95	0.833	0.292	3e-31
Q9CVB6	300	Actin-related protein 2/3	yes	no	0.906	0.906	0.300	3e-31
Q9VIM5	301	Probable actin-related pr	yes	no	0.906	0.903	0.287	5e-30

>sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1

 Score =  160 bits (406), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 169/293 (57%), Gaps = 25/293 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           MLLL++H+R L + +++  +   +   +   + +FD V+++VQ T  +   +++SVSL  
Sbjct: 1   MLLLETHNRILYDEVISHFEGDRRVNNI---FADFDGVKFNVQ-TSDDKSSLMVSVSLHA 56

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                     L  G    +K+ YG+++Q    P  G+++TL +  S       NK  L  
Sbjct: 57  AADL------LKNGGSALLKSVYGDMLQA--KPEGGYDVTLVIQSS----FSGNKEELAK 104

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K++ ++  ++ AP  +V + + +K     + +++A+ +R  E+F+L PQ + V V+F + 
Sbjct: 105 KVSLLKRHLVAAPFLMVFEGIEAK---KPLPEIIAINYRTDETFYLKPQGDNVIVIFDIA 161

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPS-ETLSANAGFVT 238
           F D+ D +L+  FLQ FV+ R+T  ++N P   +S   PPLELKGV       AN GFV+
Sbjct: 162 FKDADDVILSKIFLQSFVDVRKT--ISNVPSITFSQKDPPLELKGVKGVRAGQANHGFVS 219

Query: 239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           FV+FP H+  KK   +   + TF  Y+ YH+KC++G+MHT MR RVES+I+V+
Sbjct: 220 FVLFPAHI--KKPQESADLIQTFRDYLHYHIKCAKGYMHTSMRNRVESLIQVL 270

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.
Dictyostelium discoideum (taxid: 44689)

>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 155/295 (52%), Gaps = 20/295 (6%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATE---VDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M++L+ ++R ++E L  +  N  +  +   V+  + +FD V Y +     +   ++LS+S
Sbjct: 1   MIILEQNNRIIVELLEQKFANAKEGGKPESVNVTFADFDGVLYKLSNPDGDRTKIILSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA + ++  YG    +   P  GFN+TL+ NL+ LP +  +   
Sbjct: 61  LK------FYTELQQHGADDLLRRVYGG--HMRSTPEQGFNVTLEYNLADLPADTTD--- 109

Query: 118 LLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVF 177
            LV+ AS  +    A   V  K+   +    +  +   + +R  E+ ++  +A++VTV+F
Sbjct: 110 -LVQAASALKRNCFAS--VFEKYFEFQEAGQEGHKRAVINYRDDETMYIEAKADRVTVIF 166

Query: 178 PMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAGF 236
              F D+ D ++   FLQEF E R+ +    AP  ++S   PPLELK +P   +  N G+
Sbjct: 167 STVFKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVGY 224

Query: 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           +TFV+FPRH   K  D T+  + +F  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct: 225 ITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLKVL 279

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Caenorhabditis elegans (taxid: 6239)

>sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 157/306 (51%), Gaps = 26/306 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+  T +    +L+S+S+  
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHIS-TPEEKTKILISLSMKC 58

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
            P        + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 59  YPE------LVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
            I+ ++  VL AP       +  L  LA K           +   +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K S+ +MH RMR+RV 
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289

Query: 286 SMIRVV 291
              +V+
Sbjct: 290 DFQKVL 295

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Pongo abelii (taxid: 9601)

>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Homo sapiens (taxid: 9606)

>sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGSY---LVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Bos taurus (taxid: 9913)

>sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Rattus norvegicus (taxid: 10116)

>sp|P53731|ARPC2_YEAST Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 158/315 (50%), Gaps = 30/315 (9%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKAT--EVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSL 58
           ML LQ  +  + + L   ++ + K +   +D    +FD   YH+  T ++  I+LLSV  
Sbjct: 1   MLHLQPQNLLIQKTLNEAIEALRKGSPLTMDRIVSDFDYTTYHISNTAEDKSILLLSVKT 60

Query: 59  P--VPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
              V   E    G L      A   +    V I      G++ TL++ L++L        
Sbjct: 61  KAWVSVSECQLDGSLTLLKFLADHYSSLGGVTIPSEVEPGYDYTLQITLAELVQES---- 116

Query: 117 ALLVKIASVREVVLGAPLRVVLK---------------HLASKTVASDIDQ-LLALVHRP 160
             +++++ ++ ++L  P  + +                 +    VA++ D  L  + +R 
Sbjct: 117 --ILQLSVLKTIILSFPFELAISKFIELSQQQPAPVEAEITGGEVAANGDNTLFTIKYRD 174

Query: 161 KESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEAR-RTAGLNNAPLCMWSSSPP 219
           +E+ F+ P  ++VT++F   F D  D +    FLQEFV+AR R   + +AP  ++S  PP
Sbjct: 175 EENIFIKPSNDRVTIIFETIFQDETDKIFGKVFLQEFVDARKRNRQIQSAPQVLYSHEPP 234

Query: 220 LELKGV--PSETLSANAGFVTFVIFPRHVEGKKLD-RTVWNLSTFHAYVSYHVKCSEGFM 276
           LELK +  P +    +  F+TFV+FPRH + K+L   ++  L+ F  Y  YH+KCS+ +M
Sbjct: 235 LELKRLYQPPKVAEQSRRFITFVLFPRHFQTKELQFHSICQLTLFRNYFHYHIKCSKAYM 294

Query: 277 HTRMRRRVESMIRVV 291
           H+RMR RV+S I+V+
Sbjct: 295 HSRMRFRVDSFIKVL 309

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus GN=Arpc2 PE=1 SV=3

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 153/296 (51%), Gaps = 24/296 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPEPGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Mus musculus (taxid: 10090)

>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arc-p34 PE=2 SV=2

 Score =  131 bits (330), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 151/296 (51%), Gaps = 24/296 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVD---KATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E LL + +N     K   +D    +FD V YH+     +   V +S+S
Sbjct: 1   MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNGDKTKVRISIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+   +L    +G+N+++ +NL ++P   E+  
Sbjct: 61  LK-------FYKQLQEHGADELLKREYGS---LLTDTEEGYNVSVLINLEEIP---EDCE 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
            +  +I  ++     +   V  K+   +    +  +   + +R  E+ ++  + ++VTVV
Sbjct: 108 QIAKRIGLLKRNCFAS---VFEKYFDYQEQGEEGQKRAVINYRNDETLYVEAKPDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D ++   F+QE  E RR +  + AP  ++S   PPLEL    +  +  N G
Sbjct: 165 FSTIFRDEDDVIIGKVFMQELREGRRAS--HTAPQVLFSHREPPLELANTDAR-VGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           +VTFV+FPRH   +  D T+  +  F  Y+ YH+KCS+ ++H+RMR +    ++V+
Sbjct: 222 YVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVL 277

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
356526671	324	PREDICTED: actin-related protein 2/3 com	0.97	0.898	0.814	1e-142
224075397	324	predicted protein [Populus trichocarpa]	0.97	0.898	0.824	1e-140
225424319	328	PREDICTED: actin-related protein 2/3 com	0.97	0.887	0.831	1e-140
388504156	324	unknown [Lotus japonicus]	0.97	0.898	0.793	1e-139
357517353	375	Actin-related protein 2/3 complex subuni	0.97	0.776	0.797	1e-138
449433447	320	PREDICTED: actin-related protein 2/3 com	0.97	0.909	0.797	1e-137
224053635	324	predicted protein [Populus trichocarpa]	0.97	0.898	0.807	1e-137
118488545	318	unknown [Populus trichocarpa]	0.95	0.896	0.810	1e-135
356559035	320	PREDICTED: actin-related protein 2/3 com	0.956	0.896	0.793	1e-134
305690311	328	Arp2/3 complex p35 subunit [Nicotiana ta	0.97	0.887	0.769	1e-132

>gi|356526671|ref|XP_003531940.1| PREDICTED: actin-related protein 2/3 complex subunit 2-like [Glycine max]

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/291 (81%), Positives = 268/291 (92%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR QN++K  E+D+HWVEFDDVRYH+QV+MKNPH++LLSVSLP 
Sbjct: 1   MILLQSHSRFLLQTLLNRAQNLEKGVELDHHWVEFDDVRYHIQVSMKNPHVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYGN+VQILDPPRDGFNLTLK+NLSKLP N+E KHA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKAAYGNLVQILDPPRDGFNLTLKINLSKLPANQEQKHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLRV+L+HLA++TVA D+D L+ALVHRP ESFFL PQA+KVTVV+PMR
Sbjct: 121 KVASIREVVLGAPLRVILEHLAARTVALDMDPLVALVHRPNESFFLFPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PPLELK VP++ LSANAGFVTFV
Sbjct: 181 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSLTPPLELKEVPADALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEG+KLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ +
Sbjct: 241 IFPRHVEGQKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQAL 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075397|ref|XP_002304616.1| predicted protein [Populus trichocarpa] gi|222842048|gb|EEE79595.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/291 (82%), Positives = 267/291 (91%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRVQN++KA E+DYHWVEFDDVRYH+ V+MKNP+++LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVQNLEKAVELDYHWVEFDDVRYHILVSMKNPNVLLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLPFGAIEA+KAAYG VVQILDPPRDGFNLTLKLNL KLP +EE+++ALLV
Sbjct: 61  PPPEAVFIGGLPFGAIEALKAAYGVVVQILDPPRDGFNLTLKLNLGKLPLDEEHRYALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHL+S+TV   ID LLALVHR KESFFL+PQ +KVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLSSRTVIPGIDGLLALVHRSKESFFLVPQPDKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID   ATSFLQEFVEAR TAGLNNAP C+WS +PPLELK  P+E LSANAGFV+FV
Sbjct: 181 FKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMI+ +
Sbjct: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIQAL 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424319|ref|XP_002284770.1| PREDICTED: actin-related protein 2/3 complex subunit 2 isoform 1 [Vitis vinifera] gi|297737660|emb|CBI26861.3| unnamed protein product [Vitis vinifera]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/291 (83%), Positives = 264/291 (90%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SRFLL+ LLNRVQN++K  E+DY WVEFDDVRYHVQV+MK P  +LLSVSLP 
Sbjct: 1   MILLQSPSRFLLQTLLNRVQNLEKGVELDYQWVEFDDVRYHVQVSMKYPQFLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  E +F GGLPFGAIEAIKA+YG +VQILDPP+DGFNLTLKLNLSKLPP+EE KHALLV
Sbjct: 61  PAQEAVFSGGLPFGAIEAIKASYGVLVQILDPPKDGFNLTLKLNLSKLPPDEEYKHALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHLAS+TVA DI++  ALVHRPKESFFL+PQAEKVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLASRTVAPDINRPFALVHRPKESFFLVPQAEKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSIDTVLATSFLQEFVEARRTAGLNNAP C+WS SPPLEL+G   E LSANAGFVTFV
Sbjct: 181 FKDSIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPLELRGTAGEALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEGKKLDRTVW+LSTF AYVSYHVKCSEGFMHTRMRRRVES+I+ +
Sbjct: 241 IFPRHVEGKKLDRTVWSLSTFRAYVSYHVKCSEGFMHTRMRRRVESLIQAL 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504156|gb|AFK40144.1| unknown [Lotus japonicus]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 267/291 (91%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR QN++K  E+D+HWVEFDDVRYH+QV+MKNPHI+LLSVSLP 
Sbjct: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHILLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKA YG +VQILDPP+DGFNLTLK+NLSK+P N+E +HA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+ASVREVVLGAPLRV+LKHLAS+TVA D+D ++ALVHRPKESFFL+PQA+KVTVV+PMR
Sbjct: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRPKESFFLLPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGL+N P C WS +PPLELK +P++ LSANAGFV+FV
Sbjct: 181 FNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEG KLDRTVW+LSTFHAYVSYHVKCSEGFMHTRMRRRVE++I+ +
Sbjct: 241 IFPRHVEGPKLDRTVWSLSTFHAYVSYHVKCSEGFMHTRMRRRVETLIQAL 291

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517353|ref|XP_003628965.1| Actin-related protein 2/3 complex subunit [Medicago truncatula] gi|355522987|gb|AET03441.1| Actin-related protein 2/3 complex subunit [Medicago truncatula]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/291 (79%), Positives = 266/291 (91%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR+QN++K  E+D+HWVEFDDVRYH+QV+MKNP+I LLSVSLP 
Sbjct: 52  MILLQSHSRFLLQTLLNRLQNIEKGVELDHHWVEFDDVRYHIQVSMKNPNIFLLSVSLPT 111

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYG++VQILDPPRDGFNLTLK+NLSK+P N+E + ALLV
Sbjct: 112 PSSETIFVCGLPFGAIEAIKAAYGSLVQILDPPRDGFNLTLKINLSKVPANQEQRQALLV 171

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+ASVREVVLGAPLRV+LKHLAS+ VA D+D L+ALVHRPKESFF+ PQA+KVTV++PMR
Sbjct: 172 KVASVREVVLGAPLRVILKHLASRNVAPDMDPLVALVHRPKESFFVFPQADKVTVMYPMR 231

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PP ELKGV ++ LSANAGFV+FV
Sbjct: 232 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSHTPPPELKGVSTDALSANAGFVSFV 291

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEG KLDRTVW+LSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ +
Sbjct: 292 IFPRHVEGPKLDRTVWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQAL 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433447|ref|XP_004134509.1| PREDICTED: actin-related protein 2/3 complex subunit 2-like [Cucumis sativus]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/291 (79%), Positives = 264/291 (90%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRV N++KA EVDY+WVEFDDVRYHVQV+MKNPH+ LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVHNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  +T+F GGLP GAIEAIKAAYG +VQILDPPRDGFNLTLKLNLSKLP +E+N+H +LV
Sbjct: 61  PSADTVFCGGLPSGAIEAIKAAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTILV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLR +LK L S+ VASD+++L+ALVHRPKESFFL+PQAEKVTVVFPMR
Sbjct: 121 KVASIREVVLGAPLRGILKQLGSRVVASDVNKLVALVHRPKESFFLVPQAEKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID  LATSFLQEFVEARRTAGLNNAP C WS SPP ELKG PS+ LSANAGFVTFV
Sbjct: 181 FKDSIDIALATSFLQEFVEARRTAGLNNAPPCSWSLSPPQELKGAPSDALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IF RHVEGK++DR +W+LSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ +
Sbjct: 241 IFTRHVEGKRVDRVIWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQAL 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053635|ref|XP_002297905.1| predicted protein [Populus trichocarpa] gi|222845163|gb|EEE82710.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/291 (80%), Positives = 264/291 (90%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SRFLL+ LLNRVQN++KA E+DY WVEF DVRYH+ V+ KNP+++LLSVSLP 
Sbjct: 1   MILLQSQSRFLLQTLLNRVQNLEKAVELDYLWVEFSDVRYHILVSTKNPNVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLP GAIEAIKAAYG VV ILDPPRDGFNLTLKLNL+KLPP+EE+++ALLV
Sbjct: 61  PPPEAVFIGGLPGGAIEAIKAAYGVVVHILDPPRDGFNLTLKLNLAKLPPDEEHRYALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHLAS+TV  D+D++LALVHRPKESFFL+ Q +KVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLASRTVVPDVDRVLALVHRPKESFFLVSQPDKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSIDT  ATSFLQEFVEARR AGLNNAP C+WS +PPLEL   P+E LSANAGFV+FV
Sbjct: 181 FKDSIDTAFATSFLQEFVEARRAAGLNNAPPCLWSPTPPLELNEAPAEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ +
Sbjct: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQAL 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488545|gb|ABK96085.1| unknown [Populus trichocarpa]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/291 (81%), Positives = 262/291 (90%), Gaps = 6/291 (2%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRVQN++KA E+DYHWVEFDDV      +MKNP+++LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVQNLEKAVELDYHWVEFDDV------SMKNPNVLLLSVSLPI 54

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLPFGAIEA+KAAYG VVQILDPPRDGFNLTLKLNL KLP +EE+++ALLV
Sbjct: 55  PPPEAVFIGGLPFGAIEALKAAYGVVVQILDPPRDGFNLTLKLNLGKLPLDEEHRYALLV 114

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHL+S+TV   ID LLALVHR KESFFL+PQ +KVTVVFPMR
Sbjct: 115 KIASVREVVLGAPLRVVLKHLSSRTVIPGIDGLLALVHRSKESFFLVPQPDKVTVVFPMR 174

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID   ATSFLQEFVEAR TAGLNNAP C+WS +PPLELK  P+E LSANAGFV+FV
Sbjct: 175 FKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVSFV 234

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMI+ +
Sbjct: 235 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIQAL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559035|ref|XP_003547807.1| PREDICTED: actin-related protein 2/3 complex subunit 2 [Glycine max]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 261/291 (89%), Gaps = 4/291 (1%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSH RFL + LL   QN++K  E+D+HWVEFDDVRYH+QV+MKNPH++LLSVSLP 
Sbjct: 1   MILLQSHFRFLFQPLLIGPQNLEKGVELDHHWVEFDDVRYHIQVSMKNPHVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYGN+VQILDPPRDGFNLTLK+NLSKLP N+E KHA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKAAYGNLVQILDPPRDGFNLTLKINLSKLPANQEQKHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLRV+L+HLA++TVA D+D L+ALVHRP ESFFL PQA+KVTVV+PMR
Sbjct: 121 KVASIREVVLGAPLRVILEHLAARTVAPDLDPLVALVHRPNESFFLFPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PPLELK VP    +ANAGFVTFV
Sbjct: 181 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSLTPPLELKEVP----AANAGFVTFV 236

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEG+KLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVES+I+ +
Sbjct: 237 IFPRHVEGQKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQAL 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|305690311|gb|ADM64536.1| Arp2/3 complex p35 subunit [Nicotiana tabacum]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/291 (76%), Positives = 260/291 (89%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SR+LL+ L NRVQN++K  E+D  WVEFDD+RYH+Q ++KNP+++LLSVSLP+
Sbjct: 1   MILLQSPSRYLLQILSNRVQNLEKGVELDCQWVEFDDIRYHIQASVKNPNVLLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPET+  GGLP GA+EAIKAAYG V QILDPPRDGFNLTLKLNLSKLPP+EE+KHALL 
Sbjct: 61  PPPETVLFGGLPLGALEAIKAAYGVVAQILDPPRDGFNLTLKLNLSKLPPDEEHKHALLT 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVV+GAPLR VLKHL S+TV SD+ + +ALVHRP ESFFL+PQ +KVTV+FPMR
Sbjct: 121 KIASVREVVMGAPLRAVLKHLVSRTVPSDLGKPVALVHRPNESFFLVPQVDKVTVIFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDS+DTVLATSFLQEFVEARRTAGLNNAP C+WS S P ELK   +E LSANAGFV+FV
Sbjct: 181 FNDSVDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSAPQELKEAFTEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           IFPRHVEG+KLDRTVWNLSTFHAYV+YHVKCSE FMHTRMRR+VES+I+ +
Sbjct: 241 IFPRHVEGRKLDRTVWNLSTFHAYVNYHVKCSECFMHTRMRRQVESLIQAL 291

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:505006160	318	DIS2 "AT1G30825" [Arabidopsis	0.956	0.902	0.707	3.8e-110
DICTYBASE|DDB_G0282813	293	arcB "actin related protein 2/	0.8	0.819	0.335	7.4e-34
UNIPROTKB|G4MTR0	319	MGG_04745 "ARP2/3 complex 34 k	0.93	0.874	0.288	4.1e-33
WB|WBGene00021170	301	arx-4 [Caenorhabditis elegans	0.913	0.910	0.300	2e-31
POMBASE|SPAC6F6.10c	317	arc2 "ARP2/3 actin-organizing	0.933	0.883	0.294	8.8e-31
ZFIN|ZDB-GENE-030131-5276	299	arpc2 "actin related protein 2	0.92	0.923	0.304	1.8e-30
ASPGD|ASPL0000057561	320	AN0306 [Emericella nidulans (t	0.933	0.875	0.264	1.6e-29
SGD|S000005318	342	ARC35 "Subunit of the ARP2/3 c	0.963	0.845	0.279	3.1e-28
UNIPROTKB|F1P1K3	308	ARPC2 "Uncharacterized protein	0.916	0.892	0.290	1.3e-27
UNIPROTKB|O15144	300	ARPC2 "Actin-related protein 2	0.916	0.916	0.286	2.8e-27

TAIR|locus:505006160 DIS2 "AT1G30825" [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 206/291 (70%), Positives = 240/291 (82%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LLQSHSRFLL+ LL R QN+DKA E+DY W+EFDDVRYHVQVTMKNP++         
Sbjct:     1 MILLQSHSRFLLQTLLTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPN 60

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                E +   GLP GAIEAIK  YG   QILDPPRDGF+LTLKLN SK+ P+EE    LL 
Sbjct:    61 PPPEAMSFDGLPLGAIEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKVRPDEE----LLT 116

Query:   121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
             K+AS+REVV+GAPL+++ KHLAS+TVA ++D+L+A++HRP E+FFL+PQA+KVTV FPMR
Sbjct:   117 KLASIREVVMGAPLKIIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQADKVTVAFPMR 176

Query:   181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
             F DS+DT+LATSFL+EFVEARR A LN AP C WS + P EL+G P ETLSANAGFVTFV
Sbjct:   177 FKDSVDTILATSFLKEFVEARRAAALNTAPSCSWSPTAPQELEGAPKETLSANAGFVTFV 236

Query:   241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
             IFPRHVEGKKLDRTVWNLSTFHAYVSYHVK SEGFMHTRMRRRVESMI+ +
Sbjct:   237 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKFSEGFMHTRMRRRVESMIQAL 287

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0007015 "actin filament organization" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0010090 "trichome morphogenesis" evidence=NAS

DICTYBASE|DDB_G0282813 arcB "actin related protein 2/3 complex, subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 88/262 (33%), Positives = 149/262 (56%)

Query:    32 WVEFDDVRYHVQVTMKNPHIXXXXXXXXXXXXETIFIGGLPFGAIEAIKAAYGNVVQILD 91
             + +FD V+++VQ +     +            + +  GG    A+  +K+ YG+++Q   
Sbjct:    29 FADFDGVKFNVQTSDDKSSLMVSVSLHAAA--DLLKNGG---SAL--LKSVYGDMLQA-- 79

Query:    92 PPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDID 151
              P  G+++TL +  S       NK  L  K++ ++  ++ AP  +V + + +K     + 
Sbjct:    80 KPEGGYDVTLVIQSSF----SGNKEELAKKVSLLKRHLVAAPFLMVFEGIEAK---KPLP 132

Query:   152 QLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPL 211
             +++A+ +R  E+F+L PQ + V V+F + F D+ D +L+  FLQ FV+ R+T  ++N P 
Sbjct:   133 EIIAINYRTDETFYLKPQGDNVIVIFDIAFKDADDVILSKIFLQSFVDVRKT--ISNVPS 190

Query:   212 CMWSSS-PPLELKGVPSETLS-ANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHV 269
               +S   PPLELKGV       AN GFV+FV+FP H+  KK   +   + TF  Y+ YH+
Sbjct:   191 ITFSQKDPPLELKGVKGVRAGQANHGFVSFVLFPAHI--KKPQESADLIQTFRDYLHYHI 248

Query:   270 KCSEGFMHTRMRRRVESMIRVV 291
             KC++G+MHT MR RVES+I+V+
Sbjct:   249 KCAKGYMHTSMRNRVESLIQVL 270

GO:0030670 "phagocytic vesicle membrane" evidence=IDA

GO:0006909 "phagocytosis" evidence=IEP

GO:0006887 "exocytosis" evidence=IEP

GO:0031982 "vesicle" evidence=IDA

GO:0030041 "actin filament polymerization" evidence=IMP;TAS

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IC

GO:0030175 "filopodium" evidence=IC

GO:0051015 "actin filament binding" evidence=TAS

GO:0045335 "phagocytic vesicle" evidence=TAS

GO:0045010 "actin nucleation" evidence=TAS

GO:0030042 "actin filament depolymerization" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0031252 "cell leading edge" evidence=IC

GO:0031143 "pseudopodium" evidence=IEA;IC

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005905 "coated pit" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MTR0 MGG_04745 "ARP2/3 complex 34 kDa subunit" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 88/305 (28%), Positives = 155/305 (50%)

Query:     2 LLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXXX 61
             +LL  +   L++++L    +      +D    +FD V +H+        I          
Sbjct:     1 MLLLDYQNVLIQSVLTERFSGAPPVSIDQTVSDFDGVIFHISTPESKTKILVSLQIRCYK 60

Query:    62 XXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVK 121
                      + +GA + +   YG   Q + PP  G++ ++ ++L  LP   E +  L+ K
Sbjct:    61 DL-------VKYGAEDVLNREYG---QYVVPPEPGYDFSVMVDLENLPSEPEAREELVKK 110

Query:   122 IASVREVVLGAPLRVV------LKHLASKTVASDIDQ-------LLALVHRPKESFFLIP 168
             I+ ++   + AP          LK  ASK  + +  Q       ++A+ +R +E+ ++  
Sbjct:   111 ISLLKRNAMAAPFEHAYAEHYKLKEEASKYTSEEAPQGIREGGEVMAIHYREEEAIYVKA 170

Query:   169 QAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPS- 227
               ++VTV+F   F +  D V    F+QEFV+ARR A + NAP  ++ + PPLEL+GVP  
Sbjct:   171 SFDRVTVIFSTIFREETDRVYGKVFIQEFVDARRRA-IQNAPQVLFRNDPPLELQGVPGV 229

Query:   228 -ETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVES 286
              +T +   G+VTFV+FPRH+  +++   + ++ TF  Y  YH+K S+ ++HTRMRRR   
Sbjct:   230 KDTGTGEIGYVTFVLFPRHLTPQRMPDVISHIQTFRDYFHYHIKASKAYIHTRMRRRTAD 289

Query:   287 MIRVV 291
              ++V+
Sbjct:   290 FLQVL 294

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00021170 arx-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 89/296 (30%), Positives = 150/296 (50%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVD---KATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXX 57
             M++L+ ++R ++E L  +  N     K   V+  + +FD V Y     + NP        
Sbjct:     1 MIILEQNNRIIVELLEQKFANAKEGGKPESVNVTFADFDGVLYK----LSNPD---GDRT 53

Query:    58 XXXXXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
                      F   L   GA + ++  YG  ++    P  GFN+TL+ NL+ LP +  +  
Sbjct:    54 KIILSISLKFYTELQQHGADDLLRRVYGGHMR--STPEQGFNVTLEYNLADLPADTTD-- 109

Query:   117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
               LV+ AS  +    A   V  K+   +    +  +   + +R  E+ ++  +A++VTV+
Sbjct:   110 --LVQAASALKRNCFAS--VFEKYFEFQEAGQEGHKRAVINYRDDETMYIEAKADRVTVI 165

Query:   177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
             F   F D+ D ++   FLQEF E R+ +    AP  ++S   PPLELK +P   +  N G
Sbjct:   166 FSTVFKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVG 223

Query:   236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
             ++TFV+FPRH   K  D T+  + +F  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct:   224 YITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLKVL 279

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0010631 "epithelial cell migration" evidence=IMP

POMBASE|SPAC6F6.10c arc2 "ARP2/3 actin-organizing complex subunit Arc34" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 90/306 (29%), Positives = 152/306 (49%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             ML L  ++ F+ E L  R  + +  + +D    +FD V +H+    +   I         
Sbjct:     1 MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHISTPEEKTKILISLSMKCY 59

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                E +      +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct:    60 P--ELV-----NYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query:   121 KIASVREVVLGAPL-RVVLKH-----LASKTV--ASDID------QLLALVHRPKESFFL 166
              I+ ++  VL AP  R   K      LA K    A  +D      +L+A+ +R +E+  L
Sbjct:   110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query:   167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
              P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct:   170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query:   226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
                    + GFVTFV+F RH   +  +  + ++  F   + +H+K S+ +MH RMR+RV 
Sbjct:   230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289

Query:   286 SMIRVV 291
                +V+
Sbjct:   290 DFQKVL 295

GO:0000147 "actin cortical patch assembly" evidence=IC

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0006897 "endocytosis" evidence=IC

GO:0030479 "actin cortical patch" evidence=IDA

GO:0032153 "cell division site" evidence=IDA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

ZFIN|ZDB-GENE-030131-5276 arpc2 "actin related protein 2/3 complex, subunit 2" [Danio rerio (taxid:7955)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 89/292 (30%), Positives = 144/292 (49%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  +  +     + +   V F D    V   + NP+          
Sbjct:     1 MILLEINNRIIEETLSLKFDSASNGNKPEAVEVTFADFD-GVLYHISNPN--GDKTKVMV 57

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                   F      GA E +K  YGN    L  P DG+N++L  +L  LPPN+E     ++
Sbjct:    58 SISLKFFKELQEHGADELLKRVYGN---FLVAPEDGYNISLLFDLDALPPNKEE----MI 110

Query:   121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
               A + +    A   V  K+   +    D ++   + +R  ES ++  + ++VTVVF   
Sbjct:   111 HQAGILKRNCFAS--VFEKYFKFQEEGRDGEKRAVVHYRDDESMYIEAKKDRVTVVFSTV 168

Query:   181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVTF 239
             F D  D ++   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++TF
Sbjct:   169 FKDDDDVIIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIGYITF 225

Query:   240 VIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
             V+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct:   226 VLFPRHTNANTRDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000057561 AN0306 [Emericella nidulans (taxid:162425)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 81/306 (26%), Positives = 152/306 (49%)

Query:     2 LLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXXX 61
             +LL  +   L+ +LL    +      +D    +FD V +H    +  P +          
Sbjct:     1 MLLLDYENVLIRSLLTERFSGAPPVSIDQIVSDFDGVTFH----LSTPEVKTKILISLNV 56

Query:    62 XXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVK 121
                  F   + +GA + ++  YG  +   +P   G++ ++ ++L  LP ++  +  L+ +
Sbjct:    57 K---CFRELVQYGAQQVLEREYGPYIVAPEP---GYDFSVLIDLENLPDDQTAREDLITR 110

Query:   122 IASVREVVLGAPLRVV------LKHLASKTVA-------SDIDQLLALVHRPKESFFLIP 168
             +A ++   + AP          L   ASK  +       ++  +++A+ +R +E+ ++  
Sbjct:   111 LALLKRNAMAAPFEKAFDEFAQLAEEASKYTSEAAPAGVAEGGEVMAIHYREEEAIYIKA 170

Query:   169 QAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARR-TAGLNNAPLCMWSSSPPLELKGVPS 227
               ++VTV+F   F +  D +    FLQEFV+ARR  A L NAP  ++ + PPLEL GVP 
Sbjct:   171 SHDRVTVIFSTVFREETDRIFGKVFLQEFVDARRRVATLQNAPQVLFRNDPPLELAGVPG 230

Query:   228 --ETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
               +       ++TFV+FPRH+  ++    + ++ TF  Y  YH+K S+ ++HTRMR+R  
Sbjct:   231 LQDAGDGKISYITFVLFPRHLTPQRRQENISHIQTFRDYFHYHIKASKAYIHTRMRKRTA 290

Query:   286 SMIRVV 291
               ++V+
Sbjct:   291 DFLQVL 296

GO:0005634 "nucleus" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0030479 "actin cortical patch" evidence=IEA

GO:0051286 "cell tip" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

SGD|S000005318 ARC35 "Subunit of the ARP2/3 complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 87/311 (27%), Positives = 153/311 (49%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWV--EFDDVRYHVQVTMKNPHIXXXXXXX 58
             ML LQ  +  + + L   ++ + K + +    +  +FD   YH+  T ++  I       
Sbjct:     1 MLHLQPQNLLIQKTLNEAIEALRKGSPLTMDRIVSDFDYTTYHISNTAEDKSILLLSVKT 60

Query:    59 XX--XXXETIFIGGLPFGAIEAIKAAYGNV--VQILDPPRDGFNLTLKLNLSKLPPNEEN 114
                    E    G L    ++ +   Y ++  V I      G++ TL++ L++L      
Sbjct:    61 KAWVSVSECQLDGSLTL--LKFLADHYSSLGGVTIPSEVEPGYDYTLQITLAELVQESIL 118

Query:   115 KHALL----------VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESF 164
             + ++L          + I+   E+    P  V  +    +  A+  + L  + +R +E+ 
Sbjct:   119 QLSVLKTIILSFPFELAISKFIELSQQQPAPVEAEITGGEVAANGDNTLFTIKYRDEENI 178

Query:   165 FLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEAR-RTAGLNNAPLCMWSSSPPLELK 223
             F+ P  ++VT++F   F D  D +    FLQEFV+AR R   + +AP  ++S  PPLELK
Sbjct:   179 FIKPSNDRVTIIFETIFQDETDKIFGKVFLQEFVDARKRNRQIQSAPQVLYSHEPPLELK 238

Query:   224 GV--PSETLSANAGFVTFVIFPRHVEGKKLD-RTVWNLSTFHAYVSYHVKCSEGFMHTRM 280
              +  P +    +  F+TFV+FPRH + K+L   ++  L+ F  Y  YH+KCS+ +MH+RM
Sbjct:   239 RLYQPPKVAEQSRRFITFVLFPRHFQTKELQFHSICQLTLFRNYFHYHIKCSKAYMHSRM 298

Query:   281 RRRVESMIRVV 291
             R RV+S I+V+
Sbjct:   299 RFRVDSFIKVL 309

GO:0005198 "structural molecule activity" evidence=IMP

GO:0030479 "actin cortical patch" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IGI;IMP;IPI

GO:0005829 "cytosol" evidence=IPI

GO:0030036 "actin cytoskeleton organization" evidence=IGI;IMP;IPI

GO:0000001 "mitochondrion inheritance" evidence=TAS

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1P1K3 ARPC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 85/293 (29%), Positives = 143/293 (48%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  + +      + +   V F D    V   + NP+          
Sbjct:     9 MILLEVNNRIIEETLTLKFEGAAAGNKPEAVEVTFADFD-GVLYHISNPN---GDKTKVM 64

Query:    61 XXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                   F   L   GA E +K  YGN    L  P  G+N++L  +L  LP +   K A++
Sbjct:    65 VSISLKFYKELQEHGADEVLKKVYGNY---LVNPESGYNVSLLYDLENLPAD---KDAIV 118

Query:   120 VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPM 179
              +   ++     +   V  K+   +    + ++   + +R  E+ ++  + ++VTVVF  
Sbjct:   119 HQAGMLKRNCFAS---VFEKYFKFQEEGKEGEKRAVIHYRDDETMYVEAKKDRVTVVFST 175

Query:   180 RFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVT 238
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++T
Sbjct:   176 VFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AIGDNIGYIT 232

Query:   239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
             FV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct:   233 FVLFPRHTNAAARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 285

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

UNIPROTKB|O15144 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 84/293 (28%), Positives = 143/293 (48%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  + +N     + +   V F D    V   + NP+          
Sbjct:     1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFD-GVLYHISNPN---GDKTKVM 56

Query:    61 XXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                   F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K +++
Sbjct:    57 VSISLKFYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KDSIV 110

Query:   120 VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPM 179
              +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVVF  
Sbjct:   111 HQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFST 167

Query:   180 RFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVT 238
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++T
Sbjct:   168 VFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIGYIT 224

Query:   239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
             FV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct:   225 FVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

GO:0003779 "actin binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0035650 "AP-1 adaptor complex binding" evidence=IEA

GO:0071933 "Arp2/3 complex binding" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P85970	ARPC2_RAT	No assigned EC number	0.3006	0.9066	0.9066	yes	no
O96623	ARPC2_DICDI	No assigned EC number	0.3378	0.8933	0.9146	yes	no
Q3MHR7	ARPC2_BOVIN	No assigned EC number	0.3006	0.9066	0.9066	yes	no
Q9CVB6	ARPC2_MOUSE	No assigned EC number	0.3006	0.9066	0.9066	yes	no
O15144	ARPC2_HUMAN	No assigned EC number	0.3006	0.9066	0.9066	yes	no
Q5R5Z5	ARPC2_PONAB	No assigned EC number	0.3006	0.9066	0.9066	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam04045	240	pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit	3e-87

>gnl|CDD|217859 pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit p34-Arc

 Score =  260 bits (666), Expect = 3e-87
 Identities = 86/241 (35%), Positives = 137/241 (56%), Gaps = 14/241 (5%)

Query: 53  LLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNE 112
           L+SVSL   P        + +GA E +K  YG  +     P  G++++L ++L +LP +E
Sbjct: 1   LVSVSLKCWPDL------VKYGAEELLKREYGTYLG--VKPEPGYDVSLLIDLEELPADE 52

Query: 113 ENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEK 172
             +  L+ KIA ++   + AP     +  A     ++ +++  + +R  E+ ++ P  ++
Sbjct: 53  --REELIEKIALLKRNCMAAPFEKAFEKQAELAEEAEGEEVAVIHYRDDETIYIKPSFDR 110

Query: 173 VTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETL- 230
           VTV+F   F D  D ++   FLQEFV+ARR +    AP  ++S   PPLEL+GVP     
Sbjct: 111 VTVIFSTVFKDETDKIIGKVFLQEFVDARRRS-RQTAPQVLFSHKEPPLELQGVPGAAKA 169

Query: 231 SANAGFVTFVIFPRH-VEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR 289
             N G+VTFV+FPRH V  K+ D T+  + TF  Y+ YH+KCS+ +MH+RMR RV   ++
Sbjct: 170 GDNVGYVTFVLFPRHLVTPKRRDNTISLIQTFRNYLHYHIKCSKAYMHSRMRNRVAEFLK 229

Query: 290 V 290
           V
Sbjct: 230 V 230

Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. This family represents the p34-Arc subunit. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG2826	301	consensus Actin-related protein Arp2/3 complex, su	100.0
PF04045	241	P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; In	100.0
PTZ00278	174	ARP2/3 complex subunit; Provisional	93.49
PF05856	170	ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); Inte	92.76

>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]

Probab=100.00  E-value=4.4e-117  Score=804.65  Aligned_cols=275  Identities=32%  Similarity=0.606  Sum_probs=258.4

Q ss_pred             CcccccccHHHHHHHHHhhhc---cCCccccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCchHHH
Q 022229            1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (300)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~---~~kp~~~d~~~~DFD~v~yhis~~~~~k~~l~lSislk~~~~~~l~~~~l~~G~~e   77 (300)
                      ||+||++|+||+++|.+++++   +.+|+++|++++|||||+|||||+++||++|++|||+|||  .++    ..||+++
T Consensus         1 Mi~Le~nN~iI~etL~~kf~~~~~g~~P~sid~~vaDFDgv~yhiSnp~gdktkillSislK~y--~el----q~~Ga~~   74 (301)
T KOG2826|consen    1 MILLEPNNRIIEETLNEKFENARAGGKPESIDVTVADFDGVLYHISNPNGDKTKILLSISLKFY--KEL----QLHGADD   74 (301)
T ss_pred             CceeccccHHHHHHHHHHHHHHhccCCCcceeEEEeccCceEEEccCCCCCceEEEEEEehhhH--HHH----HHcCHHH
Confidence            999999999999999999987   4589999999999999999999999999999999999965  332    2499999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEecCCCCCCChhhHHHHHHHHHhHHHHHhhchHHHHHHHhcccccccccCcceEEe
Q 022229           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV  157 (300)
Q Consensus        78 ~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~LKrn~laApF~~~f~~l~~~~~~~~~~~~~~I~  157 (300)
                      +||++||.|+   ..||+|||+||++||++||++++   ++++.+++|||||+||+|+++|+.   |+++.++++.++||
T Consensus        75 LLk~~yg~~~---~epE~Gyn~slli~L~~lpa~~~---~l~~~i~~lkrn~~as~F~k~f~~---Q~~~~e~~~r~~I~  145 (301)
T KOG2826|consen   75 LLKRVYGSYL---SEPEPGYNVSLLIDLAELPADKE---SLAKTISLLKRNCFASVFEKYFQF---QEAGVEGEKRAVIH  145 (301)
T ss_pred             HHHHHhcccc---CCCCCCccEEEEEEHHhCchhHH---HHHHHHHHhhhhHHHHHHHHHHhc---chhhhhhhheeEEE
Confidence            9999999998   67999999999999999999954   499999999999999999988754   34445567889999


Q ss_pred             ccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCC-CCCcccCCCCCCCCCCCeeE
Q 022229          158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF  236 (300)
Q Consensus       158 YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~-~PPlEl~~~~~~~~~~n~gy  236 (300)
                      |||||+|||+|++|||||||||+|+|+||+||||||||||+||||+  +|+|||||||+ ||||||++++++++|+|+||
T Consensus       146 YRddEti~i~~k~DRVTvvFsTiF~de~D~I~GKVFlQEf~e~Rra--~qtAPqVLfShrePPLElkd~~~~~vgdn~gy  223 (301)
T KOG2826|consen  146 YRDDETIYIEPKNDRVTVVFSTIFRDEDDVIIGKVFLQEFVEGRRA--SQTAPQVLFSHREPPLELKDLYDARVGDNIGY  223 (301)
T ss_pred             eccCceEEEecCCCeEEEEEEEeeccCCceeehHHHHHHHHHHHhh--hccccHHHhhcCCCCchhhhcCCcccccccce
Confidence            9999999999999999999999999999999999999999999997  89999999997 99999999988899999999


Q ss_pred             EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhh
Q 022229          237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVL  292 (300)
Q Consensus       237 vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkvL~  292 (300)
                      |||||||||++++.+++||++|++|||||||||||||||||||||+||++|||||-
T Consensus       224 iTFVLFpRH~~k~~rd~tI~~i~~FRdylHyHIKcSKaYmHsRMR~k~~dFlKVLN  279 (301)
T KOG2826|consen  224 ITFVLFPRHTNKETRDNTINLIHLFRDYLHYHIKCSKAYMHSRMRAKTSDFLKVLN  279 (301)
T ss_pred             EEEEEecccCCchhccchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999984

>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells

Probab=100.00  E-value=1.8e-101  Score=710.08  Aligned_cols=230  Identities=42%  Similarity=0.786  Sum_probs=197.0

Q ss_pred             EEEEeeCCCCCccccccCCCchHHHHHHHhhcccccccCCCCCCcceEEEecCCCCCCChhhHHHHHHHHHhHHHHHhhc
Q 022229           53 LLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGA  132 (300)
Q Consensus        53 ~lSislk~~~~~~l~~~~l~~G~~e~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~LKrn~laA  132 (300)
                      +|||++||  |.+|.    +||+.|+||++||++++  ++||+|||+||.+||++||+++++++++|+++|+||||||||
T Consensus         1 lvSi~~~~--~~~l~----~~G~~e~l~~~Yg~~~~--~~pe~Gy~~tL~idl~~lp~~~~~~~~~i~~is~LKr~~~aa   72 (241)
T PF04045_consen    1 LVSISLKC--WKELQ----QYGAEEYLKREYGSYVQ--TPPESGYDVTLVIDLEKLPADEEDREELIKKISLLKRNCLAA   72 (241)
T ss_dssp             EEEEE-TT--HHHHH----TTTHHHHHHHHCCCCE---ES--TTSSEEEEEETTS-----SSHHHHHHHHHTHHHHHCCH
T ss_pred             CeEEEech--HHHHH----HcCHHHHHHHhcccccc--CCCCCCccEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            68999994  67764    59999999999999986  689999999999999999998888999999999999999999


Q ss_pred             hHHHHHHHhcccccccccCcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCc
Q 022229          133 PLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLC  212 (300)
Q Consensus       133 pF~~~f~~l~~~~~~~~~~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqV  212 (300)
                      ||+++|+.+++++..+.++++++|+||+||+|||+|++|||||||||+|+|+||+||||||||||+||||+++ |+||||
T Consensus        73 pF~~~f~~~~~~~~~~~~~~~~~i~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~-~~APqv  151 (241)
T PF04045_consen   73 PFEKAFDEQASLSEEPPGEKPAVIHYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSR-QTAPQV  151 (241)
T ss_dssp             HHHHHHCHHHCT-----TTT-EEEEECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT---TTS-EE
T ss_pred             HHHHHHHHHHhCCccccCCceEEEEeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccC-CCCCce
Confidence            9999999988887656577899999999999999999999999999999999999999999999999999965 999999


Q ss_pred             cCCC-CCCcccCCCCCCC-CCCCeeEEEEEecCCCC-CCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 022229          213 MWSS-SPPLELKGVPSET-LSANAGFVTFVIFPRHV-EGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR  289 (300)
Q Consensus       213 l~s~-~PPlEl~~~~~~~-~~~n~gyvTFvLFpRH~-~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lk  289 (300)
                      +||+ +||+||+|+++++ .++|+|||||||||||+ +++++++|||+|++|||||||||||||||||||||+||++|||
T Consensus       152 lfS~~~PPlEl~~~~~~~~~~~n~gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lk  231 (241)
T PF04045_consen  152 LFSHREPPLELRGVPGARNLGDNVGYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLK  231 (241)
T ss_dssp             EEECSS--CGGTT-TT----STTEEEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHcCCCCccccCCCeEEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            9998 9999999998887 89999999999999995 4899999999999999999999999999999999999999999


Q ss_pred             Hh
Q 022229          290 VV  291 (300)
Q Consensus       290 vL  291 (300)
                      ||
T Consensus       232 vL  233 (241)
T PF04045_consen  232 VL  233 (241)
T ss_dssp             HH
T ss_pred             HH
Confidence            98

The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....

>PTZ00278 ARP2/3 complex subunit; Provisional

Probab=93.49  E-value=0.11  Score=46.43  Aligned_cols=119  Identities=19%  Similarity=0.348  Sum_probs=96.2

Q ss_pred             cceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCCCCC
Q 022229          152 QLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLS  231 (300)
Q Consensus       152 ~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~~PPlEl~~~~~~~~~  231 (300)
                      .++.|...++|.+.|.|+-+.|.|.|...-.|+-++++++-|+. |.-.|-.     +=+|         ||-.|-    
T Consensus        53 ~pl~I~Rne~E~clIE~SiNSvRiSi~ikqaDeie~iL~~kf~~-Fl~~RAe-----~F~I---------LRrkPv----  113 (174)
T PTZ00278         53 NPIYIVRSEKEKCLIEPSINSVRISFSFKKSDELDVIIARKFVS-FLAQRAE-----QFVI---------LRRKPI----  113 (174)
T ss_pred             CcEEEEEcCCceEEEEcccceEEEEEEehhhChHHHHHHHHHHH-HHHhhhh-----ceeE---------EeecCc----
Confidence            67899999999999999999999999999999999999999987 5554432     1111         222221    


Q ss_pred             CCeeE-EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHh
Q 022229          232 ANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV  291 (300)
Q Consensus       232 ~n~gy-vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkvL  291 (300)
                        .|| |||.+---|++.=...+-|+.|.+|=.=.-=-|.--|-.+.+|=|.=.++|++-+
T Consensus       114 --~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaRaR~~A~~fl~~f  172 (174)
T PTZ00278        114 --PGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTRARIAAPEFFKAL  172 (174)
T ss_pred             --CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence              244 7899999999865667899999999888888888999999999999999999865

>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins

Probab=92.76  E-value=0.25  Score=44.19  Aligned_cols=118  Identities=20%  Similarity=0.323  Sum_probs=83.5

Q ss_pred             CcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCCCC
Q 022229          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (300)
Q Consensus       151 ~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~~PPlEl~~~~~~~~  230 (300)
                      -+++.|...+.|.++|.|+-+.|.|.+...-.|+-++++.+-|+. |.-.|-.     +=+|         ||-.|-   
T Consensus        50 l~pl~I~Rne~E~clIE~SiNSvRvSi~ikq~Deie~iL~~kf~r-Fl~~RAe-----~F~I---------LRRkPv---  111 (170)
T PF05856_consen   50 LNPLVISRNEKEKCLIEPSINSVRVSIKIKQADEIERILCHKFTR-FLMQRAE-----NFFI---------LRRKPV---  111 (170)
T ss_dssp             ---EEEESSSS-EEEEEEBSSEEEEEEE----SCHHHHHHHHHHH-HHHHCTT-----TSTT---------B-SS-----
T ss_pred             cCceeeccCCCceEEEEcccceEEEEEEecccChHHHHHHHHHHH-HHHhhhh-----hhee---------eeecCc---
Confidence            367899999999999999999999999999999999999999976 5555432     1111         222111   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 022229          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR  289 (300)
Q Consensus       231 ~~n~gy-vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lk  289 (300)
                         -|| |||.+--.|++.--+.+-|+.|.+|=.=+-=-|.--|--+-+|=|.=.++|++
T Consensus       112 ---~GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naRaR~~A~~fl~  168 (170)
T PF05856_consen  112 ---EGYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARARIVAEEFLK  168 (170)
T ss_dssp             ---TTSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred             ---CCCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence               144 89999999998656678899999997777677777777788888877777765

The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
3dwl_D	317	Crystal Structure Of Fission Yeast Arp2/3 Complex L		9e-33
1k8k_D	300	Crystal Structure Of Arp23 COMPLEX Length = 300		3e-30

>pdb|3DWL|D Chain D, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 317

Iteration: 1
 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 150/306 (49%), Gaps = 26/306 (8%)
Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+    +   I         
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHISTPEEKTKILISLSM--- 56
Query: 61  XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                 +   + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 57  ----KCYPELVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109
Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
            I+ ++  VL AP       +  L  LA K           +   +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169
Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229
Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K S+ +MH RMR+RV 
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289
Query: 286 SMIRVV 291
              +V+
Sbjct: 290 DFQKVL 295

>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX Length = 300

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 148/296 (50%), Gaps = 24/296 (8%)
Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXX 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     NP+       
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHIS----NPNGDKTKVM 56
Query: 58  XXXXXXETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
                    F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 57  VSISLK---FYKELQAHGADELLKRVYGS---YLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           ++TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	1e-100
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	4e-96
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 317

 Score =  295 bits (755), Expect = e-100
 Identities = 88/306 (28%), Positives = 154/306 (50%), Gaps = 26/306 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+  T +    +L+S+S+  
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHIS-TPEEKTKILISLSMKC 58

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
            P        + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 59  YPEL------VNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDID--------------QLLALVHRPKESFFL 166
            I+ ++  VL AP        A     +  D              +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K S+ +MH RMR+RV 
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289

Query: 286 SMIRVV 291
              +V+
Sbjct: 290 DFQKVL 295

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D Length = 300

 Score =  284 bits (728), Expect = 4e-96
 Identities = 85/295 (28%), Positives = 150/295 (50%), Gaps = 22/295 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA E +K  YG     L  P  G+N++L  +L  LP +++   +
Sbjct: 61  LK------FYKELQAHGADELLKRVYG---SYLVNPESGYNVSLLYDLENLPASKD---S 108

Query: 118 LLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVF 177
           ++ +   ++     +      K+   +    + +    + +R  E+ ++  + ++VTVVF
Sbjct: 109 IVHQAGMLKRNCFASVFE---KYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVF 165

Query: 178 PMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSS-PPLELKGVPSETLSANAGF 236
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK      +  N G+
Sbjct: 166 STVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTD-AAVGDNIGY 222

Query: 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV 291
           +TFV+FPRH      D T+  + TF  Y+ YH+KCS+ ++HTRMR +    ++V+
Sbjct: 223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVL 277

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 47/312 (15%), Positives = 94/312 (30%), Gaps = 62/312 (19%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIV-LLSVSLP 59
           +L  + +   LL  +L  VQN          W  F+ +   + +T +   +   LS +  
Sbjct: 237 LLKSKPYENCLL--VLLNVQNAK-------AWNAFN-LSCKILLTTRFKQVTDFLSAATT 286

Query: 60  VPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                      L    ++++   Y                 L      LP      +   
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-----------------LDCRPQDLPREVLTTNPRR 329

Query: 120 VKIASVREVVLGAPLRVVL------KHLA----SKTVASDIDQLLALVHRPK-ESFFLIP 168
           + I       +   +R  L      KH+     +  + S ++ L    +R   +   + P
Sbjct: 330 LSI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 169 QAEKVTV-VFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPP---LELKG 224
            +  +   +  + + D I + +        V       L        + S P   LELK 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDV-----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 225 VPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRV 284
                 + +   V     P+  +   L     +   F++++ +H+K  E         R+
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNIE------HPERM 490

Query: 285 ESMIRVVLPLSF 296
                V L   F
Sbjct: 491 TLFRMVFLDFRF 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	100.0
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	100.0
3dwl_F	168	Actin-related protein 2/3 complex subunit 4; prope	94.43
1k8k_F	168	P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-	93.39

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.6e-121  Score=860.91  Aligned_cols=280  Identities=31%  Similarity=0.610  Sum_probs=241.5

Q ss_pred             CcccccccHHHHHHHHHhhhccCCccccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCchHHHHHH
Q 022229            1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIK   80 (300)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~~~kp~~~d~~~~DFD~v~yhis~~~~~k~~l~lSislk~~~~~~l~~~~l~~G~~e~Lk   80 (300)
                      ||+||++|+||+++|++|+. +++|.++|++++|||||+||||++ ++|++|+|||++||  |.++.    +||+.|+||
T Consensus         1 MilLe~~N~ii~~~L~~~~~-~~~p~~~d~~~~DFDgv~yHis~p-~~k~~l~lSi~~~~--~~~l~----~~Ga~e~Lk   72 (317)
T 3dwl_D            1 MLSLDYNNIFIYELLTERFS-SENPSSIDQVVTDFDGVTFHISTP-EEKTKILISLSMKC--YPELV----NYGTLDLLK   72 (317)
T ss_dssp             CCSCCSSCHHHHHHHHHHTT-SCC-----CEEEETTTEEEECCCC----CCCCEEEECSS--HHHHH----TTTHHHHHH
T ss_pred             CcccccccHHHHHHHHHHhc-cCCCCccceeEEcCCCcEEEEeCC-CCCceEEEEEeccc--hHHHH----hcCHHHHHH
Confidence            99999999999999999996 589999999999999999999996 89999999999995  56653    699999999


Q ss_pred             HhhcccccccCCCCCCcceEEEecCCCCCCChhhHHHHHHHHHhHHHHHhhchHHHHHHHhc---cc-----ccc-----
Q 022229           81 AAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLA---SK-----TVA-----  147 (300)
Q Consensus        81 ~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~LKrn~laApF~~~f~~l~---~~-----~~~-----  147 (300)
                      ++||+++   .+||+|||+||++||++||+++|+|+++|+++|+||||||||||+++|+..+   +.     +.+     
T Consensus        73 ~~Yg~~~---~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aapFe~~f~~~~~L~~~~~~~~~~~~~~~~  149 (317)
T 3dwl_D           73 QIYGAYV---HEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDK  149 (317)
T ss_dssp             HHSTTTE---ECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSHHHHHHHTHHHHCC----------CCCCH
T ss_pred             HHhcccc---CCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccccccccccccc
Confidence            9999998   6799999999999999999999999999999999999999999999996433   21     011     


Q ss_pred             -cccCcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCC-CCCCcccCCC
Q 022229          148 -SDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV  225 (300)
Q Consensus       148 -~~~~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s-~~PPlEl~~~  225 (300)
                       .+++++++||||+||+|||+|++|||||||||+|+|+||+||||||||||+||||++++|+||||+|| ++|||||+|+
T Consensus       150 ~~~~~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~  229 (317)
T 3dwl_D          150 QATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI  229 (317)
T ss_dssp             HHHTTTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSC
T ss_pred             cccCCCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCC
Confidence             12568999999999999999999999999999999999999999999999999999789999999999 6999999999


Q ss_pred             CCCCCCCCeeEEEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHh
Q 022229          226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVV  291 (300)
Q Consensus       226 ~~~~~~~n~gyvTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkvL  291 (300)
                      ++++.++|+|||||||||||++++++++|||+||+|||||||||||||||||||||+||++|||||
T Consensus       230 ~~~~~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vL  295 (317)
T 3dwl_D          230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVL  295 (317)
T ss_dssp             C-------CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHH
Confidence            988889999999999999999988888999999999999999999999999999999999999998

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D

Probab=100.00  E-value=2.9e-118  Score=840.67  Aligned_cols=274  Identities=31%  Similarity=0.590  Sum_probs=256.7

Q ss_pred             CcccccccHHHHHHHHHhhhc---cCCccccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCchHHH
Q 022229            1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (300)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~---~~kp~~~d~~~~DFD~v~yhis~~~~~k~~l~lSislk~~~~~~l~~~~l~~G~~e   77 (300)
                      |||||++|+||+++|++|+.+   +++|.++|++++|||||+||||++++||++++|||++||  |.+|.    +||+.|
T Consensus         1 MilLe~~n~ii~~~L~~r~~~~~~~~~p~~~d~~~~DFDgv~yHis~~~~dk~~i~vSisl~~--~~~L~----~~Ga~e   74 (300)
T 1k8k_D            1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF--YKELQ----AHGADE   74 (300)
T ss_dssp             CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT--HHHHH----TTTHHH
T ss_pred             CccccccCHHHHHHHHHHHhhhccCCCCCccceEEecCCCcEEEeecCCCCCcEEEEEEEccc--hHHHh----hcCHHH
Confidence            999999999999999999986   678999999999999999999999999999999999995  56653    599999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEecCCCCCCChhhHHHHHHHHHhHHHHHhhchHHHHHHHhcccccccccCcceEEe
Q 022229           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV  157 (300)
Q Consensus        78 ~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~LKrn~laApF~~~f~~l~~~~~~~~~~~~~~I~  157 (300)
                      +||++||+++   .+||+|||+||.+||++||++   ++++|+++|+||||||||||+++|+ +++.  +++++.+++|+
T Consensus        75 ~Lk~~Yg~~v---~~pe~Gy~~tL~idl~~lp~~---~~~li~kia~LKrn~laapF~~~F~-~~~~--~~~~~~~~~I~  145 (300)
T 1k8k_D           75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPAS---KDSIVHQAGMLKRNCFASVFEKYFQ-FQEE--GKEGENRAVIH  145 (300)
T ss_dssp             HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSC---HHHHHHHHHTHHHHHHHHHHHHHHH-HHHH--TCCSCCCEEEE
T ss_pred             HHHHHccccc---cCCCCCccEEEEEEHHHCCcC---HHHHHHHHHHHHHHHHHHHHHHHHH-HHhc--ccCCCceEEee
Confidence            9999999997   379999999999999999998   4559999999999999999999999 4433  33444559999


Q ss_pred             ccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCC-CCCcccCCCCCCCCCCCeeE
Q 022229          158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF  236 (300)
Q Consensus       158 YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~-~PPlEl~~~~~~~~~~n~gy  236 (300)
                      ||++|+|||+|++|||||||||+|+|+||+||||||||||+||||+  +++||||+||+ +||+||+|++ ...++|+||
T Consensus       146 YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~--~~~APqvlfs~~~PPlEL~~~~-~~~~~n~gy  222 (300)
T 1k8k_D          146 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTAPQVLFSHREPPLELKDTD-AAVGDNIGY  222 (300)
T ss_dssp             EETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTSCEEEEEESSCCGGGTTTT-CCCSTTEEE
T ss_pred             cCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhc--cCCCCceecCCCCCChHHcCCc-cccCCCeEE
Confidence            9999999999999999999999999999999999999999999999  99999999998 9999999998 466999999


Q ss_pred             EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhh
Q 022229          237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRVVL  292 (300)
Q Consensus       237 vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkvL~  292 (300)
                      |||||||||++++++++|||+||+|||||||||||||||||||||+||++|||||-
T Consensus       223 VTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLn  278 (300)
T 1k8k_D          223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLN  278 (300)
T ss_dssp             EEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999983

>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=94.43  E-value=0.11  Score=44.99  Aligned_cols=119  Identities=20%  Similarity=0.311  Sum_probs=95.7

Q ss_pred             CcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCCCC
Q 022229          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (300)
Q Consensus       151 ~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~~PPlEl~~~~~~~~  230 (300)
                      -+++.|...+.|.++|.|+-+.|.|.+...-.|+-++++.+-|+. |.-.|-.     +=+|         ||-.|-   
T Consensus        48 l~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RAe-----~f~I---------LRrkPv---  109 (168)
T 3dwl_F           48 LKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRAE-----SFFI---------LRRKPV---  109 (168)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGTT-----TSTT---------BCSSCC---
T ss_pred             cCceEEeecCCceEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhccc-----ceEE---------eeeCCc---
Confidence            468999999999999999999999999999999999999999976 4444321     2222         222221   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 022229          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRV  290 (300)
Q Consensus       231 ~~n~gy-vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkv  290 (300)
                         -|| |||.+--.|++.=-..+-|+.|.+|=.-.-=-|.--|-.+.+|=|.=.++||+-
T Consensus       110 ---~GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~~  167 (168)
T 3dwl_F          110 ---QGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSC  167 (168)
T ss_dssp             ---TTCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             ---CCcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               133 899999999976566789999999999998889999999999999888898874

>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F

Probab=93.39  E-value=0.12  Score=44.73  Aligned_cols=119  Identities=18%  Similarity=0.271  Sum_probs=95.0

Q ss_pred             CcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCCCC
Q 022229          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (300)
Q Consensus       151 ~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~~PPlEl~~~~~~~~  230 (300)
                      -+++.|...++|..+|.|+-+.|.|.+...-.|+-++++.+-|+. |.-.|-.     +=+||-         -.|-   
T Consensus        48 l~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RAe-----~f~ILR---------rkPv---  109 (168)
T 1k8k_F           48 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILR---------RKPV---  109 (168)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBC---------SSCC---
T ss_pred             ccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhccc-----ceEEee---------eCCc---
Confidence            368999999999999999999999999999999999999999976 5544432     222222         2221   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 022229          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRV  290 (300)
Q Consensus       231 ~~n~gy-vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lkv  290 (300)
                         -|| |||.+---|++.=...+-|+.|.+|=.-.-=-|.--|-.+.+|=|.=.++|++-
T Consensus       110 ---~GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~A~~fl~~  167 (168)
T 1k8k_F          110 ---EGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKN  167 (168)
T ss_dssp             ---TTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---CCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Confidence               133 889999999976567789999999998888888888999999999888888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1k8kd2	164	d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow	1e-60
d1k8kd1	120	d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (B	3e-30

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 164

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  188 bits (478), Expect = 1e-60
 Identities = 52/146 (35%), Positives = 84/146 (57%), Gaps = 4/146 (2%)

Query: 147 ASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGL 206
             + +    + +R  E+ ++  + ++VTVVF   F D  D V+   F+QEF E RR +  
Sbjct: 15  GKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRAS-- 72

Query: 207 NNAPLCMWS-SSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYV 265
           + AP  ++S   PPLELK   +  +  N G++TFV+FPRH      D T+  + TF  Y+
Sbjct: 73  HTAPQVLFSHREPPLELKDTDA-AVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYL 131

Query: 266 SYHVKCSEGFMHTRMRRRVESMIRVV 291
            YH+KCS+ ++HTRMR +    ++V+
Sbjct: 132 HYHIKCSKAYIHTRMRAKTSDFLKVL 157

>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  108 bits (272), Expect = 3e-30
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 15/129 (11%)

Query: 1   MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA E +K  YG     L  P  G+N++L  +L  LP +++   +
Sbjct: 61  LKF------YKELQAHGADELLKRVYG---SYLVNPESGYNVSLLYDLENLPASKD---S 108

Query: 118 LLVKIASVR 126
           ++ +   ++
Sbjct: 109 IVHQAGMLK 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1k8kd2	164	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kd1	120	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kf_	167	ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9	93.93

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-78  Score=524.19  Aligned_cols=157  Identities=33%  Similarity=0.651  Sum_probs=146.8

Q ss_pred             hhchHHHHHHHhcccccccccCcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCC
Q 022229          130 LGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNA  209 (300)
Q Consensus       130 laApF~~~f~~l~~~~~~~~~~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~A  209 (300)
                      |||+|+++|+-.+.   +++++++++|||||||+|||+|++|||||||||+|+|+||+||||||||||+||||+  +++|
T Consensus         1 Fa~~Fek~f~~q~~---~~~g~~~~~i~YR~~E~~yv~~~~drvTViFs~~F~d~~D~v~gkvFlQEf~daRr~--~~~A   75 (164)
T d1k8kd2           1 FASVFEKYFQFQEE---GKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTA   75 (164)
T ss_dssp             HHHHHHHHHHHHHH---TCCSCCCEEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTS
T ss_pred             CchHHHHHHHHHHh---cccccceeEEecCCCccEEEEeCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHhcc--cCCC
Confidence            68999999964333   334567899999999999999999999999999999999999999999999999986  8999


Q ss_pred             CCccCCC-CCCcccCCCCCCCCCCCeeEEEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHH
Q 022229          210 PLCMWSS-SPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMI  288 (300)
Q Consensus       210 PqVl~s~-~PPlEl~~~~~~~~~~n~gyvTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~l  288 (300)
                      |||+||+ +||+||+|+++ ..++|+|||||||||||++++++++|||+|++|||||||||||||||||||||+||++||
T Consensus        76 Pqvl~s~~~PPlel~~~~~-~~~~n~gyvTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~fl  154 (164)
T d1k8kd2          76 PQVLFSHREPPLELKDTDA-AVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFL  154 (164)
T ss_dssp             CEEEEEESSCCGGGTTTTC-CCSTTEEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCCCchHhcCCCc-ccCCCcceEEEEecccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999997 99999999886 689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 022229          289 RVVL  292 (300)
Q Consensus       289 kvL~  292 (300)
                      |||=
T Consensus       155 kvLn  158 (164)
T d1k8kd2         155 KVLN  158 (164)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9983

>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.1e-44  Score=294.30  Aligned_cols=117  Identities=26%  Similarity=0.500  Sum_probs=109.2

Q ss_pred             CcccccccHHHHHHHHHhhhc---cCCccccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCchHHH
Q 022229            1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (300)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~---~~kp~~~d~~~~DFD~v~yhis~~~~~k~~l~lSislk~~~~~~l~~~~l~~G~~e   77 (300)
                      ||+||++|+||+++|++||.+   ++||.++|++++|||||+|||||+++||++|+|||++||  |.++.    +|||.|
T Consensus         1 MilLe~~N~ii~~tL~er~~~~~~g~kp~svD~~~~DFDgv~yHIs~~~~dk~ki~vSislk~--~~~L~----~~Ga~e   74 (120)
T d1k8kd1           1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF--YKELQ----AHGADE   74 (120)
T ss_dssp             CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT--HHHHH----TTTHHH
T ss_pred             CeecccccHHHHHHHHHHHhcccccCCCccceeEEEccCCcEEEeeCCCCCCceEEEEEEhhh--hHHHH----HcCHHH
Confidence            999999999999999999965   578999999999999999999999999999999999995  56653    699999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEecCCCCCCChhhHHHHHHHHHhHHHHH
Q 022229           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVV  129 (300)
Q Consensus        78 ~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~LKrn~  129 (300)
                      +||++||+|+   .+||+|||+||++||+++|+++|   ++|+++|+|||||
T Consensus        75 ~L~~~Yg~~~---~~pE~GY~~sl~~dL~~lp~~~e---~li~~islLKRnc  120 (120)
T d1k8kd1          75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPASKD---SIVHQAGMLKRNC  120 (120)
T ss_dssp             HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSCHH---HHHHHHHTHHHHH
T ss_pred             HHHHHhhccc---CCCCCCceEEEEEEHHhCCCCHH---HHHHHHHhhccCC
Confidence            9999999997   67999999999999999999865   4999999999998

>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC4 (20 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.93  E-value=0.041  Score=45.63  Aligned_cols=118  Identities=19%  Similarity=0.291  Sum_probs=93.6

Q ss_pred             CcceEEeccCCceEEEeecCCeeEEEeeceecCCcchhhhHHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCCCC
Q 022229          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (300)
Q Consensus       151 ~~~~~I~YR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~s~~PPlEl~~~~~~~~  230 (300)
                      -+++.|...++|.++|.++-+.|.|.+.....|+-++++++-|+. |.-.|-.     +=++|         |-.|-   
T Consensus        47 l~pl~i~R~e~E~clIE~SiNSvRiSi~ikq~Deie~iL~~kf~~-Fl~~rae-----~F~IL---------RrkPi---  108 (167)
T d1k8kf_          47 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFIL---------RRKPV---  108 (167)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTB---------CSSCC---
T ss_pred             cccEEEEEcCCceEEEEcccceEEEEEEecccchHHHHHHHHHHH-HHHHhhh-----hceee---------eecCc---
Confidence            467899999999999999999999999999999999999999976 6555532     22222         22111   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 022229          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR  289 (300)
Q Consensus       231 ~~n~gy-vTFvLFpRH~~~~~~~~ti~~i~~FR~YlHYHIKcSKaymHsRMR~Rv~~~lk  289 (300)
                         -|| |||.+---|++.=...+-|+.|.+|=.=.-=-|.--|-.+.+|=|.=.++|||
T Consensus       109 ---~GYDISFLItn~h~e~m~k~klvdFIi~FmeeiDkeIsemKL~~n~raR~~Ae~fl~  165 (167)
T d1k8kf_         109 ---EGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK  165 (167)
T ss_dssp             ---TTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---CCCceeeeehhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               133 88999999987656678899999998888888888888899998888888876