Citrus Sinensis ID: 022231

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MFLQNLRRSVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSVTQNKDHYEEHPLQHEETEAGETTDDGWEEEDEAEPQVGDGGDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLEY
cHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccHHHHHcccccEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEcccccccccccccccccccccccEEEEccccEEEEEEEEEc
cHHHHHHHcccccEEEccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccEcccccccEEEEccccHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEccHHHHHHccccEEEEEEcccccccccccEEEEEEEEccccEEEEEEEccHHccccccccccccHHHcccEccccHHHEEEEEEEEcc
MFLQNLRRSVGRWSLFFsssslstrrlsffalpniqhnsllfqnpcrfvdvslkptsplalshrflsssvtqnkdhyeehplqheeteagettddgweeedeaepqvgdggdgggvvfqgvpwgeRALSIAHEVLLQLGddiklyafkatprgYVYVRLDKlsnkygcpsmeeLESYSQEYKKKLDevgalgeipddlalevstpgaermlkvpddlgrfkempitvcyedqdsdsrekTGVFLLDSIEMDSEICVWKLadvkenrdpqekgrplsrkrrdwrlnlpFVMHKRVTLYLEY
mflqnlrrsvgrwsLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSVTQNKDHYeehplqheeteagETTDDGWEEEDEAepqvgdggdggGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVgalgeipddlalevstpgaermlkvpddlgrfkeMPITvcyedqdsdsreKTGVFLLDSIEMDSEICVWkladvkenrdpqekgrplsrkrrdwrlnlpfvmhkrvtlyley
MFLQNLRRSVGRWslffsssslstrrlsffalPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSVTQNKDHYEEHPLQHeeteagettddgweeedeaePqvgdggdgggvvfqgvPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLEY
********SVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSL************************************************************GGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCP******************VGALGEIP*DLAL**********LKVPDDLGRFKEMPITVCYE*********TGVFLLDSIEMDSEICVWKLADV******************DWRLNLPFVMHKRVTLYL**
*******RSVGRWSLFF***********************LFQNPCRFVDVSL************************************GETTDDGWEEEDE**********GGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKEN*****************RLNLPFVMHKRVTLYLEY
MFLQNLRRSVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSS***************************************DGGDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE***********SRKRRDWRLNLPFVMHKRVTLYLEY
MFLQNLRRSVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALS*RFLSSSV*******************************EAEPQVGDGGDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLEY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFLQNLRRSVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSVTQNKDHYEEHPLQHEETEAGETTDDGWEEEDEAEPQVGDGGDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
Q8F7K3162 Ribosome maturation facto yes no 0.32 0.592 0.367 7e-10
Q72NX1162 Ribosome maturation facto yes no 0.32 0.592 0.367 7e-10
Q04ZJ3162 Ribosome maturation facto yes no 0.366 0.679 0.312 4e-09
Q04U33162 Ribosome maturation facto yes no 0.366 0.679 0.312 4e-09
B0SQH2162 Ribosome maturation facto yes no 0.316 0.586 0.313 1e-06
B0SH16162 Ribosome maturation facto yes no 0.316 0.586 0.313 1e-06
Q5N0A8153 Ribosome maturation facto yes no 0.343 0.673 0.3 0.0002
Q31LL6153 Ribosome maturation facto yes no 0.343 0.673 0.3 0.0002
>sp|Q8F7K3|RIMP_LEPIN Ribosome maturation factor RimP OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=rimP PE=3 SV=1 Back     alignment and function desciption
 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 10/106 (9%)

Query: 142 IKLYAFKATPR---GYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPD-D 197
           +KLY+ K   R     + V LD L + YG  S+ E E  S++ K++L+ +      PD D
Sbjct: 20  VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERIS-----PDLD 74

Query: 198 LALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 243
             L+VS+ GAER L +P DL RF+ +PI + +  ++S+ +E+ G+F
Sbjct: 75  YTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEESE-KEQEGIF 119
Required for maturation of 30S ribosomal subunits.
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518)
>sp|Q72NX1|RIMP_LEPIC Ribosome maturation factor RimP OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=rimP PE=3 SV=1 Back     alignment and function description
>sp|Q04ZJ3|RIMP_LEPBL Ribosome maturation factor RimP OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rimP PE=3 SV=1 Back     alignment and function description
>sp|Q04U33|RIMP_LEPBJ Ribosome maturation factor RimP OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rimP PE=3 SV=1 Back     alignment and function description
>sp|B0SQH2|RIMP_LEPBP Ribosome maturation factor RimP OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rimP PE=3 SV=1 Back     alignment and function description
>sp|B0SH16|RIMP_LEPBA Ribosome maturation factor RimP OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rimP PE=3 SV=1 Back     alignment and function description
>sp|Q5N0A8|RIMP_SYNP6 Ribosome maturation factor RimP OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rimP PE=3 SV=1 Back     alignment and function description
>sp|Q31LL6|RIMP_SYNE7 Ribosome maturation factor RimP OS=Synechococcus elongatus (strain PCC 7942) GN=rimP PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
356499905279 PREDICTED: uncharacterized protein LOC10 0.73 0.784 0.733 9e-85
357487659282 Ribosome maturation factor rimP [Medicag 0.913 0.971 0.558 4e-82
388510886282 unknown [Medicago truncatula] 0.913 0.971 0.555 3e-81
297738103310 unnamed protein product [Vitis vinifera] 0.836 0.809 0.662 8e-81
224112098229 predicted protein [Populus trichocarpa] 0.726 0.951 0.702 8e-75
225423440223 PREDICTED: uncharacterized protein LOC10 0.716 0.964 0.712 1e-74
147774154 1721 hypothetical protein VITISV_038204 [Viti 0.756 0.131 0.606 9e-72
449478348315 PREDICTED: uncharacterized protein LOC10 0.736 0.701 0.669 2e-69
449434720315 PREDICTED: uncharacterized protein LOC10 0.736 0.701 0.665 3e-69
18409217305 uncharacterized protein [Arabidopsis tha 0.613 0.603 0.627 2e-64
>gi|356499905|ref|XP_003518776.1| PREDICTED: uncharacterized protein LOC100806065 [Glycine max] Back     alignment and taxonomy information
 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 191/221 (86%), Gaps = 2/221 (0%)

Query: 80  HPLQHEETEAGETTDDGWEEEDEAEPQVGDGGDGGGVVFQGVPWGERALSIAHEVLLQLG 139
           H    E T+ G +TD GWEEEDE EP++GDGGDGGGV  Q VPWG+RALSIA EVL+Q  
Sbjct: 60  HHFPDETTDEGASTD-GWEEEDEVEPKIGDGGDGGGVALQNVPWGQRALSIAEEVLMQFS 118

Query: 140 DDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLA 199
           +DIKL+AFK TPRGYVYVRLDKL+++YGCPSMEELE Y+Q+YK +LDEVGALGEIPDDLA
Sbjct: 119 EDIKLFAFKTTPRGYVYVRLDKLTHEYGCPSMEELECYNQKYKTRLDEVGALGEIPDDLA 178

Query: 200 LEVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTGVFLLDSIEMDSEICVWK 258
           LEVS+PGAER+LKVPDD+ RFK++P+ VCY E+ +S+  EK GVFLLDSIE DSE+CVWK
Sbjct: 179 LEVSSPGAERLLKVPDDISRFKDLPMRVCYTENIESNCPEKDGVFLLDSIENDSEMCVWK 238

Query: 259 LADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLE 299
           LADVKENRDP +KGRPLSRK++DWRL LPF +H+ VTLYLE
Sbjct: 239 LADVKENRDPLKKGRPLSRKQKDWRLQLPFNLHRMVTLYLE 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357487659|ref|XP_003614117.1| Ribosome maturation factor rimP [Medicago truncatula] gi|355515452|gb|AES97075.1| Ribosome maturation factor rimP [Medicago truncatula] Back     alignment and taxonomy information
>gi|388510886|gb|AFK43509.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297738103|emb|CBI27304.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112098|ref|XP_002316081.1| predicted protein [Populus trichocarpa] gi|222865121|gb|EEF02252.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225423440|ref|XP_002273771.1| PREDICTED: uncharacterized protein LOC100259261 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147774154|emb|CAN72408.1| hypothetical protein VITISV_038204 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449478348|ref|XP_004155292.1| PREDICTED: uncharacterized protein LOC101225208 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434720|ref|XP_004135144.1| PREDICTED: uncharacterized protein LOC101211568 [Cucumis sativus] Back     alignment and taxonomy information
>gi|18409217|ref|NP_564954.1| uncharacterized protein [Arabidopsis thaliana] gi|13937141|gb|AAK50064.1|AF372924_1 At1g69210/F4N2_11 [Arabidopsis thaliana] gi|22137004|gb|AAM91347.1| At1g69210/F4N2_11 [Arabidopsis thaliana] gi|332196773|gb|AEE34894.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2033263305 AT1G69210 "AT1G69210" [Arabido 0.59 0.580 0.634 3.1e-60
TAIR|locus:1005716723323 AT1G77122 "AT1G77122" [Arabido 0.586 0.544 0.412 5.5e-38
TAIR|locus:2033263 AT1G69210 "AT1G69210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 113/178 (63%), Positives = 149/178 (83%)

Query:   123 WGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYK 182
             WGER LSIA +VL Q   D++L+AFK +PRGY+YVRLDKLS +YGCP+M+ELE +S+E+K
Sbjct:   128 WGERVLSIAAQVLKQSEKDLELFAFKTSPRGYIYVRLDKLSTEYGCPTMDELEEFSREFK 187

Query:   183 KKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTG 241
             K+LD+ GA   IP+DLALEVS+PGAER+L+VP+DL RFK+MP+TV Y E+ +S    K+G
Sbjct:   188 KRLDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFKDMPMTVSYVEETNSRKAVKSG 247

Query:   242 VFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLE 299
             VFLL+SI+ +S+ CVWKLADV+ENRDP+ KGRPLSRK++D R+ LPF  HK++ LYL+
Sbjct:   248 VFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLRITLPFADHKKINLYLD 305
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
TAIR|locus:1005716723 AT1G77122 "AT1G77122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
PRK14635162 PRK14635, PRK14635, hypothetical protein; Provisio 5e-13
pfam02576140 pfam02576, DUF150, Uncharacterized BCR, YhbC famil 6e-12
COG0779153 COG0779, COG0779, Uncharacterized protein conserve 4e-04
>gnl|CDD|184774 PRK14635, PRK14635, hypothetical protein; Provisional Back     alignment and domain information 
 Score = 65.3 bits (159), Expect = 5e-13
 Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 10/115 (8%)

Query: 142 IKLYAFKATPR---GYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPD-D 197
           +KLY+ K   R     + V LD L + YG  S+ E E  S++ K++L+ +      PD D
Sbjct: 20  VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERIS-----PDLD 74

Query: 198 LALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDS 252
             L+VS+ GAER L++P+DL RF+ +P+ + +  ++S+ + + G+F L + + D 
Sbjct: 75  FTLKVSSAGAERKLRLPEDLDRFRGIPVRLVFRSEESE-KWQEGIFRLVNRDGDQ 128

Length = 162
>gnl|CDD|217116 pfam02576, DUF150, Uncharacterized BCR, YhbC family COG0779 Back     alignment and domain information
>gnl|CDD|223850 COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
PRK14640152 hypothetical protein; Provisional 100.0
PRK14633150 hypothetical protein; Provisional 100.0
PRK14647159 hypothetical protein; Provisional 100.0
PRK14643164 hypothetical protein; Provisional 100.0
COG0779153 Uncharacterized protein conserved in bacteria [Fun 100.0
PRK14632172 hypothetical protein; Provisional 100.0
PRK14634155 hypothetical protein; Provisional 100.0
PRK14646155 hypothetical protein; Provisional 100.0
PRK14638150 hypothetical protein; Provisional 100.0
PRK00092154 ribosome maturation protein RimP; Reviewed 100.0
PRK14636176 hypothetical protein; Provisional 100.0
PRK14639140 hypothetical protein; Provisional 100.0
PRK14631174 hypothetical protein; Provisional 100.0
PRK14635162 hypothetical protein; Provisional 100.0
PRK14641173 hypothetical protein; Provisional 100.0
PRK14630143 hypothetical protein; Provisional 100.0
PF02576141 DUF150: Uncharacterised BCR, YhbC family COG0779; 100.0
PRK14637151 hypothetical protein; Provisional 100.0
PRK14645154 hypothetical protein; Provisional 100.0
PRK02001152 hypothetical protein; Validated 100.0
PRK14642197 hypothetical protein; Provisional 100.0
PRK14644136 hypothetical protein; Provisional 100.0
cd0173483 YlxS_C YxlS is a Bacillus subtilis gene of unknown 99.87
cd0616875 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins 86.37
>PRK14640 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.5e-40  Score=283.61  Aligned_cols=147  Identities=18%  Similarity=0.245  Sum_probs=133.2

Q ss_pred             CHHHHHHHHHHHHHhhcCCeEEEEEEE-ecCCcEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhhccccCCCCCCCeEE
Q 022231          122 PWGERALSIAHEVLLQLGDDIKLYAFK-ATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLAL  200 (300)
Q Consensus       122 ~~~e~I~el~epvl~~~G~eLvdVe~~-~~~~~~LrV~IDk~~~~dggVsLDDCe~vSr~Is~~LD~~e~~d~I~~~Y~L  200 (300)
                      .+.++++++++|+++++||+||+|+|. .++.++|||+||+    ++|||+|||+.+||+|+++||   ++|+|+++|+|
T Consensus         3 ~~~~~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~----~~gv~lddC~~vSr~is~~LD---~~d~i~~~Y~L   75 (152)
T PRK14640          3 TLEQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG----ENGVSVENCAEVSHQVGAIMD---VEDPITEEYYL   75 (152)
T ss_pred             hHHHHHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhc---ccccCCCCeEE
Confidence            367899999999999999999999999 6678999999999    788999999999999999999   57899999999


Q ss_pred             EEecCCCCCCCCChHHHhhcCCCeeEEEE-eecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCCCCcccccc
Q 022231          201 EVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKR  279 (300)
Q Consensus       201 EVSSPGieRpLk~~~df~RfiGr~VkV~l-~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~KGk~l~kkq  279 (300)
                      ||||||++|||++++||+||+|++|+|++ .+.+|+ ++++|  +|.+++++++++.+             +|+      
T Consensus        76 EVSSPGl~RpL~~~~~f~r~~G~~v~V~l~~~~~~~-k~~~G--~L~~v~~~~v~l~~-------------~~~------  133 (152)
T PRK14640         76 EVSSPGLDRPLFKVAQFEKYVGQEAAVTLRMATNNR-RKFKG--VIKAVQGDMITLTV-------------DGK------  133 (152)
T ss_pred             EEeCCCCCCcCCCHHHHHHhCCCeEEEEEecccCCc-eEEEE--EEEEEeCCEEEEEE-------------CCe------
Confidence            99999999999999999999999999999 777886 78999  78999999875442             243      


Q ss_pred             cceeEEeeccccceeEEEEeC
Q 022231          280 RDWRLNLPFVMHKRVTLYLEY  300 (300)
Q Consensus       280 ~~~~l~Ipf~dI~KArL~ieF  300 (300)
                         .+.|||++|+||||.++|
T Consensus       134 ---~~~i~~~~I~ka~l~~~~  151 (152)
T PRK14640        134 ---DEVLAFTNIQKANIVPNF  151 (152)
T ss_pred             ---EEEEEhHHeeeEEEeccc
Confidence               278999999999999987

>PRK14633 hypothetical protein; Provisional Back     alignment and domain information
>PRK14647 hypothetical protein; Provisional Back     alignment and domain information
>PRK14643 hypothetical protein; Provisional Back     alignment and domain information
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK14632 hypothetical protein; Provisional Back     alignment and domain information
>PRK14634 hypothetical protein; Provisional Back     alignment and domain information
>PRK14646 hypothetical protein; Provisional Back     alignment and domain information
>PRK14638 hypothetical protein; Provisional Back     alignment and domain information
>PRK00092 ribosome maturation protein RimP; Reviewed Back     alignment and domain information
>PRK14636 hypothetical protein; Provisional Back     alignment and domain information
>PRK14639 hypothetical protein; Provisional Back     alignment and domain information
>PRK14631 hypothetical protein; Provisional Back     alignment and domain information
>PRK14635 hypothetical protein; Provisional Back     alignment and domain information
>PRK14641 hypothetical protein; Provisional Back     alignment and domain information
>PRK14630 hypothetical protein; Provisional Back     alignment and domain information
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [] Back     alignment and domain information
>PRK14637 hypothetical protein; Provisional Back     alignment and domain information
>PRK14645 hypothetical protein; Provisional Back     alignment and domain information
>PRK02001 hypothetical protein; Validated Back     alignment and domain information
>PRK14642 hypothetical protein; Provisional Back     alignment and domain information
>PRK14644 hypothetical protein; Provisional Back     alignment and domain information
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold Back     alignment and domain information
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
1ib8_A164 Conserved protein SP14.3; nucleic acid binding pro 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1 Length = 164 Back     alignment and structure
 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 170 SMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV 227
           ++ +    ++     LD +      P+   LE+++PG ER LK  D +       I V
Sbjct: 53  TLNDTADLTEMISPVLDTIKPDP-FPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHV 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
1ib8_A164 Conserved protein SP14.3; nucleic acid binding pro 100.0
1y96_A86 Gemin6, SIP2, GEM-associated protein 6; SM fold, p 83.1
3pgw_B 231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 82.2
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1 Back     alignment and structure
Probab=100.00  E-value=3.8e-41  Score=292.95  Aligned_cols=159  Identities=18%  Similarity=0.224  Sum_probs=137.6

Q ss_pred             CceEecCCCHHHHHHHHHHHHHhhcCCeEEEEEEE-ecCCcEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhhccccCC
Q 022231          114 GGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFK-ATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALG  192 (300)
Q Consensus       114 ~~i~~~~~~~~e~I~el~epvl~~~G~eLvdVe~~-~~~~~~LrV~IDk~~~~dggVsLDDCe~vSr~Is~~LD~~e~~d  192 (300)
                      .|+..+. ++.++|+++++|++++ ||+||+|+|. .+++++|||+||+    ++|||+|||+++||+|++.||+. ++|
T Consensus         2 ~~~~mm~-~~~~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~----~~gi~lddC~~vSr~is~~LD~~-~~d   74 (164)
T 1ib8_A            2 SGVDAIA-TIVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDK----PEGITLNDTADLTEMISPVLDTI-KPD   74 (164)
T ss_dssp             CSCCHHH-HHHHHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEEC----SSCCCHHHHHHHHHHHGGGTTTC-CSC
T ss_pred             chhHHHH-HHHHHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhccc-ccc
Confidence            3444432 3678999999999999 9999999998 6778999999999    78999999999999999999952 368


Q ss_pred             CCCCCeEEEEecCCCCCCCCChHHHhhcCCCeeEEEE-eecCCCeeeEeeeeEEEEEeCCeeEEEEEeccccccCCCCCC
Q 022231          193 EIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEK  271 (300)
Q Consensus       193 ~I~~~Y~LEVSSPGieRpLk~~~df~RfiGr~VkV~l-~~ieG~kke~~GVl~L~~vDee~i~l~~~l~dVk~nr~k~~K  271 (300)
                      +|+++|+|||||||++|||++++||.||+|+.|+|++ .|++|+ +.++|  +|.+++++.+++.+.           .|
T Consensus        75 ~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~~~~g~-k~~~G--~L~~~~~~~v~l~~~-----------~k  140 (164)
T 1ib8_A           75 PFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQ-KVFEG--TLLAFEEDELTMEYM-----------DK  140 (164)
T ss_dssp             CCCSCEEEEEECCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSC-SEEEE--EEEEEETTEEEEEEE-----------CS
T ss_pred             CCCCCeEEEEeCCCCCCCCCCHHHHHHhCCcEEEEEEecccCCc-eEEEE--EEEEEeCCEEEEEEe-----------cc
Confidence            9999999999999999999999999999999999999 888987 67899  889999998766543           11


Q ss_pred             CCcccccccceeEEeeccccceeEEEEeC
Q 022231          272 GRPLSRKRRDWRLNLPFVMHKRVTLYLEY  300 (300)
Q Consensus       272 Gk~l~kkq~~~~l~Ipf~dI~KArL~ieF  300 (300)
                      ++       ...++|||++|+||||.++|
T Consensus       141 ~~-------~~~~~i~~~~I~ka~l~~ef  162 (164)
T 1ib8_A          141 TR-------KKTVQIPYSLVSKARLAVKL  162 (164)
T ss_dssp             SC-------EEEEEECSSCCSSCEEECSC
T ss_pred             cC-------CeEEEEEHHHCcEEEEEEEe
Confidence            11       01388999999999999998
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens} Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d1ib8a290 Hypothetical protein SP14.3 (SP0552) {Streptococcu 99.89
d1ib8a174 Hypothetical protein SP14.3 (SP0552) {Streptococcu 99.51
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: YhbC-like, N-terminal domain
family: YhbC-like, N-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=7.5e-24  Score=166.53  Aligned_cols=81  Identities=15%  Similarity=0.191  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCeEEEEEEE-ecCCcEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhhccccCCCCCCCeEE
Q 022231          122 PWGERALSIAHEVLLQLGDDIKLYAFK-ATPRGYVYVRLDKLSNKYGCPSMEELESYSQEYKKKLDEVGALGEIPDDLAL  200 (300)
Q Consensus       122 ~~~e~I~el~epvl~~~G~eLvdVe~~-~~~~~~LrV~IDk~~~~dggVsLDDCe~vSr~Is~~LD~~e~~d~I~~~Y~L  200 (300)
                      .+.++|+++++|+++ .||+||+|+|. .+++++|||+||+    ++||++|||+.+||.|+++||.. ++++++++|+|
T Consensus         9 ~i~e~i~~li~pvv~-~G~eL~~ve~~~~~~~~~l~I~ID~----~~gv~iddC~~vSr~is~~LD~~-e~d~i~~~Y~L   82 (90)
T d1ib8a2           9 TIVELVREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDK----PEGITLNDTADLTEMISPVLDTI-KPDPFPEQYFL   82 (90)
T ss_dssp             HHHHHHHHHHHHHHC-SSSEEEEEEEEEETTEEEEEEEEEC----SSCCCHHHHHHHHHHHGGGTTTC-CSCCCCSCEEE
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEEEEeCCCCEEEEEEEEC----CCCcCHHHHHHHHHHHHHHhccc-cccCCCCCeEE
Confidence            478999999999995 79999999999 6678999999999    78999999999999999999952 35799999999


Q ss_pred             EEecCCCC
Q 022231          201 EVSTPGAE  208 (300)
Q Consensus       201 EVSSPGie  208 (300)
                      ||||||+|
T Consensus        83 EVSSPGld   90 (90)
T d1ib8a2          83 EITSPGLE   90 (90)
T ss_dssp             EEECCSSS
T ss_pred             EeeCCCCC
Confidence            99999996
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure