Citrus Sinensis ID: 022237
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUC0 | 347 | Probable 3-hydroxyisobuty | yes | no | 1.0 | 0.864 | 0.756 | 1e-138 | |
| Q99L13 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.933 | 0.835 | 0.513 | 9e-75 | |
| Q2HJD7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.933 | 0.833 | 0.510 | 2e-74 | |
| P31937 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.933 | 0.833 | 0.506 | 6e-74 | |
| Q5R5E7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.933 | 0.833 | 0.506 | 7e-74 | |
| P29266 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.933 | 0.835 | 0.503 | 3e-73 | |
| Q54CX6 | 321 | Probable 3-hydroxyisobuty | yes | no | 0.923 | 0.862 | 0.481 | 1e-64 | |
| Q9XTI0 | 299 | Probable 3-hydroxyisobuty | yes | no | 0.926 | 0.929 | 0.438 | 7e-58 | |
| Q9V8M5 | 324 | Probable 3-hydroxyisobuty | yes | no | 0.92 | 0.851 | 0.431 | 3e-57 | |
| P28811 | 298 | 3-hydroxyisobutyrate dehy | yes | no | 0.95 | 0.956 | 0.396 | 5e-53 |
| >sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 489 bits (1260), Expect = e-138, Method: Compositional matrix adjust.
Identities = 227/300 (75%), Positives = 266/300 (88%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHV 107
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLDA
Sbjct: 108 MDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDA 167
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MA
Sbjct: 168 PVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMA 227
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGF
Sbjct: 228 VSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGF 287
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 300
ASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 288 ASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
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Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1 |
| >sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 188/292 (64%), Gaps = 12/292 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV +V K F + G +P EVAE +D +ITMLPSS +
Sbjct: 49 MGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNA 108
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 109 VEVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA----VFMDA 156
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G +AKICNN+ +A
Sbjct: 157 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLA 216
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM GVP+S NY GGF
Sbjct: 217 ISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGF 276
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 277 GTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQY 328
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Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/292 (51%), Positives = 188/292 (64%), Gaps = 12/292 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 110 IEAYSGANGILK--KVKKGSLLIDSSTIDPMVSKELAKEV------EKMGA----VFMDA 157
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G G AAKICNNL +A
Sbjct: 158 PVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLA 217
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 218 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 278 GTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQF 329
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Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 277 bits (709), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 187/292 (64%), Gaps = 12/292 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 110 IEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMDA 157
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +A
Sbjct: 158 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 217
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 218 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 278 GTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 329
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Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (708), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 187/292 (64%), Gaps = 12/292 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 110 IEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMDA 157
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +A
Sbjct: 158 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 217
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 218 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 278 GATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 329
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Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 190/292 (65%), Gaps = 12/292 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+K GY + ++DV +V K F + G +P +VAE +D +ITMLPSS +
Sbjct: 49 MGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNS 108
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 109 IEVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA----VFMDA 156
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G+G +AKICNN+ +A
Sbjct: 157 PVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLA 216
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM+GVP+S NY GGF
Sbjct: 217 ISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGF 276
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 277 GTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQY 328
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Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/291 (48%), Positives = 183/291 (62%), Gaps = 14/291 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG A NL+K G+ + V D++ + M + G +P EVA+ +DV++TMLP+S+HV
Sbjct: 33 MGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHV 92
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
+VY G NG+ Q +VRP LL+DSSTIDP T+R +++ I K+ + + MLD
Sbjct: 93 KNVYCGENGIFQ---TVRPGTLLLDSSTIDPATAREVAS-----IAKKHQST-----MLD 139
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
PVSGG AEAGTLTFMVGGSE + AK MGKN ++CG G G AK+CNNL +
Sbjct: 140 CPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVL 199
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
+SM+ VSEA+ LG G+ L I N+SSARCW+S+ YNP PGV+E PASR Y GG
Sbjct: 200 GISMIAVSEAMNLGVKQGMDPKKLAGIFNTSSARCWTSELYNPCPGVIETSPASRGYTGG 259
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 290
F S LM KDL LA+ SAK +G L + A +Y L G KDFS V+
Sbjct: 260 FGSALMTKDLGLAVDSAKSIGEPLLLGNSAHQLYTLLVAKGDGQKDFSVVY 310
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Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9XTI0|3HIDH_CAEEL Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 129/294 (43%), Positives = 180/294 (61%), Gaps = 16/294 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+K G K+ V+DVN V++ F G P ++A AS +IT+LPSS HV
Sbjct: 12 MGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPHV 71
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
VY G G+ + +++P L +DSSTID S ++ A + +LK + +D
Sbjct: 72 KAVYQGEAGIFK---TIQPGTLCMDSSTIDQIVSLEVAQAAA--LLKAE--------YID 118
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDA-YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 178
AP+SGGV A+ TLTFMVG DA ++ A+ + MGKN + G GNG AAKICNN+
Sbjct: 119 APISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNML 178
Query: 179 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 238
+ + M+ V+E + LG S+G+ A L I+N+SS RCWSSD+YNPVPGV+E +P+ R Y G
Sbjct: 179 LGIQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAG 238
Query: 239 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN-GHDSKDFSCVFQ 291
GF + LMAKDL+LA ++ P+ S A IY L + + +KDF V+Q
Sbjct: 239 GFGTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQ 292
|
Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 170/290 (58%), Gaps = 14/290 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MASNL+KAG+K+ V D++ + G E+A+ SD VITMLP+++ V
Sbjct: 39 MGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAIV 98
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
Y+ + + + IDSSTI P +++ +KK S + +DA
Sbjct: 99 DASYDE----MTADGVNKDTIFIDSSTISPDLVKSL----------QKKISAKGARFIDA 144
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AE TLTFMVGG+E Y A K + MGK +CG G G AAK+CNN+ +A
Sbjct: 145 PVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLA 204
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+GVSEA+ L G+ A+ +I+NSS+ RCW+S+ YNPVPGV PA+R+Y GGF
Sbjct: 205 ISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGF 264
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 290
+S L+ KDL LA A PL S A +Y LC+ G +KDFS V+
Sbjct: 265 SSALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVY 314
|
Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P28811|MMSB_PSEAE 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 175/300 (58%), Gaps = 15/300 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA+NL+KAG+++ V D+ + + G ++ + E ++VVI+MLP+ HV
Sbjct: 12 MGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHV 71
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+Y G +GLL LLID STI P+T+R ++ A + L +LDA
Sbjct: 72 ESLYLGDDGLL--ARVAGKPLLIDCSTIAPETARKVAEAAAAKGL----------TLLDA 119
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV A AGTL+F+VGG + + A+P+ +MG+N + G G G AKICNN+ +
Sbjct: 120 PVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLG 179
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+ M G +EAL LG G+ + L++++ SS W+ + YNP PGVM PAS Y GGF
Sbjct: 180 ILMAGTAEALALGVKNGLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAPASNGYAGGF 239
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA--KLCENGHDSKDFSCVFQHYYGGKD 298
+LM KDL LALA+A+ V PL + A+++++ + H+ DFS + Q Y GKD
Sbjct: 240 QVRLMNKDLGLALANAQAVQASTPLGALARNLFSLHAQADAEHEGLDFSSI-QKLYRGKD 298
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | ||||||
| 224061611 | 347 | predicted protein [Populus trichocarpa] | 1.0 | 0.864 | 0.85 | 1e-150 | |
| 255564371 | 388 | 3-hydroxyisobutyrate dehydrogenase, puta | 1.0 | 0.773 | 0.803 | 1e-143 | |
| 225444069 | 345 | PREDICTED: probable 3-hydroxyisobutyrate | 0.996 | 0.866 | 0.789 | 1e-140 | |
| 18415593 | 347 | 3-hydroxyisobutyrate dehydrogenase [Arab | 1.0 | 0.864 | 0.756 | 1e-136 | |
| 21555592 | 347 | 3-hydroxyisobutyrate dehydrogenase-like | 1.0 | 0.864 | 0.756 | 1e-136 | |
| 449435530 | 353 | PREDICTED: probable 3-hydroxyisobutyrate | 1.0 | 0.849 | 0.77 | 1e-133 | |
| 7431189 | 371 | 3-hydroxyisobutyrate dehydrogenase homol | 1.0 | 0.808 | 0.700 | 1e-132 | |
| 297799966 | 372 | hypothetical protein ARALYDRAFT_329506 [ | 1.0 | 0.806 | 0.697 | 1e-130 | |
| 356533083 | 343 | PREDICTED: probable 3-hydroxyisobutyrate | 0.996 | 0.871 | 0.735 | 1e-129 | |
| 356533081 | 350 | PREDICTED: probable 3-hydroxyisobutyrate | 0.996 | 0.854 | 0.735 | 1e-129 |
| >gi|224061611|ref|XP_002300566.1| predicted protein [Populus trichocarpa] gi|222847824|gb|EEE85371.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/300 (85%), Positives = 275/300 (91%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG RMA+NL+K GYK+AVHD+NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV
Sbjct: 48 MGSRMANNLIKNGYKVAVHDINCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 107
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
LDVY GPNGLL+ N +RPQLLIDSSTIDPQTSR +S AVSNCILKEKKD WE PVMLDA
Sbjct: 108 LDVYTGPNGLLRCANLMRPQLLIDSSTIDPQTSRKVSVAVSNCILKEKKDHWEKPVMLDA 167
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGVLAAEAGTLTFMVGGSEDAY AAKPLFLSMGKN IYCGGAG G+AAKICNNL +A
Sbjct: 168 PVSGGVLAAEAGTLTFMVGGSEDAYLAAKPLFLSMGKNAIYCGGAGTGSAAKICNNLALA 227
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLGVSEA LGQSLGISA TLTK+LN+SSARCWSSDSYNPVPGVMEGVPASRNY GGF
Sbjct: 228 VSMLGVSEAFVLGQSLGISAGTLTKVLNTSSARCWSSDSYNPVPGVMEGVPASRNYAGGF 287
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 300
ASKLMAKDLNLA SAKEVG+ CPLT QAQ+IY +LC++GH+SKDFSC F+HYY G+DE+
Sbjct: 288 ASKLMAKDLNLAATSAKEVGLQCPLTYQAQEIYTELCKDGHESKDFSCAFRHYYSGQDEL 347
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564371|ref|XP_002523182.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223537589|gb|EEF39213.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/300 (80%), Positives = 270/300 (90%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG RMA NL+KAGYK+AVHD+NCNV+KMF+DMGV TKETP EVAEAS++VITMLPS+SHV
Sbjct: 89 MGSRMAQNLIKAGYKVAVHDINCNVIKMFTDMGVSTKETPLEVAEASNIVITMLPSTSHV 148
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
LDVYNGPNGLLQGG +RPQL I+SSTIDP+TSR +SAAVSN ++KEK +WE P+MLDA
Sbjct: 149 LDVYNGPNGLLQGGTFLRPQLFINSSTIDPETSRKLSAAVSNFVVKEKTGNWEKPLMLDA 208
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGVLAAEAGTLTFMVGGS+DAY AAKPLFLSMGK+TIYCGGAG G+AAKICNNL MA
Sbjct: 209 PVSGGVLAAEAGTLTFMVGGSKDAYLAAKPLFLSMGKSTIYCGGAGTGSAAKICNNLAMA 268
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLGVSEAL LGQSLGI A TLTK+ NSSSARCWSSDSYNPVPGVMEGVPASRNY GGF
Sbjct: 269 VSMLGVSEALALGQSLGIDADTLTKVFNSSSARCWSSDSYNPVPGVMEGVPASRNYAGGF 328
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 300
ASKLM KDLNLA ASAK V CPLT QA +IY ++CENGH+++DFSCVF+HYY GKD++
Sbjct: 329 ASKLMTKDLNLAAASAKAVDFTCPLTQQALEIYTEMCENGHETEDFSCVFRHYYFGKDKL 388
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444069|ref|XP_002264140.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Vitis vinifera] gi|297740847|emb|CBI31029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/299 (78%), Positives = 265/299 (88%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG RMA+NL+ AGYK+AVHD+N VM+MF++ GVPTKETPFE+AE SDVVITMLPSSSHV
Sbjct: 46 MGSRMANNLIMAGYKVAVHDINHEVMRMFAERGVPTKETPFEIAETSDVVITMLPSSSHV 105
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
LDVY GPNGL+ GN +RP L IDSSTIDPQTSR +S AVSNC LK++KD WE P++LDA
Sbjct: 106 LDVYTGPNGLIHDGNLLRPMLFIDSSTIDPQTSRRLSVAVSNCGLKQRKDIWETPIILDA 165
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGVLAAE GTLTFMVGGSE+AY AAK LFLSMGKNTIYCGGAGNG+AAKICNNL MA
Sbjct: 166 PVSGGVLAAETGTLTFMVGGSEEAYLAAKSLFLSMGKNTIYCGGAGNGSAAKICNNLAMA 225
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLGVSEA LGQSLGI+A TL KI NSSSARCWSSDSYNPVPGVMEGVP+SRNY GGF
Sbjct: 226 VSMLGVSEAFALGQSLGIAAGTLAKIFNSSSARCWSSDSYNPVPGVMEGVPSSRNYVGGF 285
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 299
A+KLMAKDLNLA SAKE G+ CPLTSQA++I+ +LC+ GH++KDFSCVF+HYY GKDE
Sbjct: 286 ATKLMAKDLNLAAESAKETGLTCPLTSQAKEIFVELCKEGHEAKDFSCVFRHYYSGKDE 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415593|ref|NP_567617.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] gi|30316393|sp|Q9SUC0.3|3HIDH_ARATH RecName: Full=Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial; Short=HIBADH; Flags: Precursor gi|105830240|gb|ABF74718.1| At4g20930 [Arabidopsis thaliana] gi|110737072|dbj|BAF00489.1| 3-hydroxyisobutyrate dehydrogenase -like protein [Arabidopsis thaliana] gi|332658977|gb|AEE84377.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/300 (75%), Positives = 266/300 (88%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHV 107
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLDA
Sbjct: 108 MDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDA 167
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MA
Sbjct: 168 PVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMA 227
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGF
Sbjct: 228 VSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGF 287
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 300
ASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 288 ASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555592|gb|AAM63893.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/300 (75%), Positives = 266/300 (88%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHV 107
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLDA
Sbjct: 108 MDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDA 167
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MA
Sbjct: 168 PVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMA 227
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGF
Sbjct: 228 VSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGF 287
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 300
ASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 288 ASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435530|ref|XP_004135548.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/300 (77%), Positives = 264/300 (88%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG RMA+NL+KAGY M VHD+N N MK +SD+GV TKETPFEVAEASDVVITMLPS SHV
Sbjct: 54 MGTRMANNLIKAGYNMVVHDINRNTMKNYSDLGVATKETPFEVAEASDVVITMLPSPSHV 113
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
LDVYNG +GLL GG +RP LLIDSSTIDPQTSR +SA VS+ ILKEK+ SWE+PVMLDA
Sbjct: 114 LDVYNGSHGLLHGGCHIRPWLLIDSSTIDPQTSRELSAVVSSRILKEKRGSWESPVMLDA 173
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGVLAA+A TLTFMVGG E+AY AAK LFLSMGK ++YCGG+GNG+AAKICNNL +A
Sbjct: 174 PVSGGVLAADARTLTFMVGGLEEAYHAAKALFLSMGKGSVYCGGSGNGSAAKICNNLALA 233
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLGVSEAL LGQSLGISA TLTK+ NSSSARCWSS+SYNPVPGVME VP++R+Y GGF
Sbjct: 234 VSMLGVSEALALGQSLGISAKTLTKVFNSSSARCWSSESYNPVPGVMEEVPSARDYDGGF 293
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 300
A+KLM KDLNLA ASA EVG+ PLTSQAQ+IY KLCE+G+++KDFSCVF+H+Y G DE+
Sbjct: 294 ATKLMFKDLNLAKASAGEVGLQHPLTSQAQEIYKKLCEDGYENKDFSCVFRHFYSGDDEL 353
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7431189|pir||T10635 3-hydroxyisobutyrate dehydrogenase homolog T13K14.90 - Arabidopsis thaliana gi|5262783|emb|CAB45888.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] gi|7268890|emb|CAB79093.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/324 (70%), Positives = 266/324 (82%), Gaps = 24/324 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHV 107
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK----------- 109
+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+
Sbjct: 108 MDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRASFCSSCEQVE 167
Query: 110 -------------DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 156
D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG
Sbjct: 168 IVSFSLVSSIFDVDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMG 227
Query: 157 KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS 216
+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWS
Sbjct: 228 RTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWS 287
Query: 217 SDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276
SD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+
Sbjct: 288 SDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKM 347
Query: 277 CENGHDSKDFSCVFQHYYGGKDEV 300
CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 348 CEEGHETKDFSCVFRHFYNGKDEV 371
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799966|ref|XP_002867867.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] gi|297313703|gb|EFH44126.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/324 (69%), Positives = 265/324 (81%), Gaps = 24/324 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG RM +NL+KAGYK+ VHD+N +VMKMF++MGV +ETP++VA+ S+VVITMLPSSSHV
Sbjct: 49 MGSRMVNNLVKAGYKVTVHDINRDVMKMFTEMGVSARETPYQVAQDSEVVITMLPSSSHV 108
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--------- 111
+DVY G NGLL G N++RP LLIDSSTIDPQT+R IS AVSNC LKEK+ S
Sbjct: 109 MDVYTGTNGLLLGENAIRPALLIDSSTIDPQTTRKISLAVSNCNLKEKRASFCSSCQQVE 168
Query: 112 ---------------WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 156
WE PVMLDAPVSGGVLAAEAGTLTFMVGG +DAY AA+P+ SMG
Sbjct: 169 IIQFSIVSSIIDAGNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPKDAYVAARPILQSMG 228
Query: 157 KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS 216
+ +IYCGG+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWS
Sbjct: 229 RTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWS 288
Query: 217 SDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276
SD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+
Sbjct: 289 SDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKM 348
Query: 277 CENGHDSKDFSCVFQHYYGGKDEV 300
CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 349 CEEGHETKDFSCVFRHFYNGKDEV 372
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533083|ref|XP_003535098.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/299 (73%), Positives = 257/299 (85%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG RMA+NL+KAG+++ VHD+N +V++MFS MGVPTK+TP+EV+EASDVVITMLP+S+HV
Sbjct: 41 MGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPTSAHV 100
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+DVY GPNGLL GG +RP LL+DSSTIDPQTSRN+SA V+N IL+EKK WE P LDA
Sbjct: 101 IDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKKGEWEKPFKLDA 160
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSG V AAEAGTLTFMVGGSE+A+ AAKPL SMGK+ IYCGGAG+G+AAKICNNL +A
Sbjct: 161 PVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLALA 220
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLG+SEAL LGQSLG+SASTLT I N SSARCWSSD+YNPVPG+MEGVP+S +Y GGF
Sbjct: 221 VSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSGDYNGGF 280
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 299
ASKLMAKDLNLA+ SAK G PLTSQAQ IY +LC GH++KDFSC F+HYY G DE
Sbjct: 281 ASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFRHYYSGIDE 339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533081|ref|XP_003535097.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/299 (73%), Positives = 257/299 (85%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG RMA+NL+KAG+++ VHD+N +V++MFS MGVPTK+TP+EV+EASDVVITMLP+S+HV
Sbjct: 48 MGSRMANNLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPTSAHV 107
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+DVY GPNGLL GG +RP LL+DSSTIDPQTSRN+SA V+N IL+EKK WE P LDA
Sbjct: 108 IDVYTGPNGLLHGGKLLRPWLLLDSSTIDPQTSRNLSATVTNYILREKKGEWEKPFKLDA 167
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSG V AAEAGTLTFMVGGSE+A+ AAKPL SMGK+ IYCGGAG+G+AAKICNNL +A
Sbjct: 168 PVSGSVTAAEAGTLTFMVGGSEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLALA 227
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLG+SEAL LGQSLG+SASTLT I N SSARCWSSD+YNPVPG+MEGVP+S +Y GGF
Sbjct: 228 VSMLGISEALALGQSLGVSASTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSGDYNGGF 287
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 299
ASKLMAKDLNLA+ SAK G PLTSQAQ IY +LC GH++KDFSC F+HYY G DE
Sbjct: 288 ASKLMAKDLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFRHYYSGIDE 346
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 300 | ||||||
| TAIR|locus:2133134 | 347 | AT4G20930 [Arabidopsis thalian | 1.0 | 0.864 | 0.756 | 1.3e-123 | |
| UNIPROTKB|Q5ZLI9 | 333 | HIBADH "Uncharacterized protei | 0.93 | 0.837 | 0.525 | 4.6e-73 | |
| MGI|MGI:1889802 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.933 | 0.835 | 0.513 | 3.3e-70 | |
| UNIPROTKB|F1PYB6 | 336 | HIBADH "Uncharacterized protei | 0.93 | 0.830 | 0.512 | 4.3e-70 | |
| UNIPROTKB|Q2HJD7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.93 | 0.830 | 0.512 | 8.9e-70 | |
| UNIPROTKB|P31937 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.93 | 0.830 | 0.508 | 2.4e-69 | |
| UNIPROTKB|Q5R5E7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.93 | 0.830 | 0.508 | 2.4e-69 | |
| RGD|708399 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.933 | 0.835 | 0.503 | 6.3e-69 | |
| ZFIN|ZDB-GENE-040426-1582 | 329 | hibadhb "3-hydroxyisobutyrate | 0.93 | 0.848 | 0.498 | 3.1e-67 | |
| ZFIN|ZDB-GENE-040801-264 | 328 | hibadha "3-hydroxyisobutyrate | 0.93 | 0.850 | 0.494 | 5.1e-67 |
| TAIR|locus:2133134 AT4G20930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
Identities = 227/300 (75%), Positives = 266/300 (88%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MGFRM +NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV
Sbjct: 48 MGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHV 107
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+DVY G NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLDA
Sbjct: 108 MDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDA 167
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MA
Sbjct: 168 PVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMA 227
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
VSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGF
Sbjct: 228 VSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGF 287
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 300
ASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 288 ASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
|
| UNIPROTKB|Q5ZLI9 HIBADH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 153/291 (52%), Positives = 189/291 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+K GY + +DV K F D+G ++P +VAE +D +ITMLPSS +
Sbjct: 47 MGNPMAKNLIKHGYPVIAYDVFPEACKEFQDLGAQVTDSPADVAERADRIITMLPSSPNA 106
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++VY G NG+L+ + LLIDSSTIDP S+ ++ AV EK + V +DA
Sbjct: 107 IEVYTGANGILK--KVKKGSLLIDSSTIDPSVSKELAKAV------EKMGA----VFMDA 154
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA AG LTFMVGG E + AAK L + MG N +YCG G G AAKICNN+ +A
Sbjct: 155 PVSGGVGAARAGNLTFMVGGMEQEFDAAKELLICMGSNVVYCGEVGTGQAAKICNNMLLA 214
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP++ NY GGF
Sbjct: 215 ISMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGGF 274
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
+ LMAKDL LA SA PL SQA IY +C G+ KDFS VFQ
Sbjct: 275 GTTLMAKDLGLAQISATNTKTPVPLGSQAHQIYRMMCAKGYALKDFSAVFQ 325
|
|
| MGI|MGI:1889802 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 150/292 (51%), Positives = 188/292 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV +V K F + G +P EVAE +D +ITMLPSS +
Sbjct: 49 MGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNA 108
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 109 VEVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA----VFMDA 156
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G +AKICNN+ +A
Sbjct: 157 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLA 216
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM GVP+S NY GGF
Sbjct: 217 ISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGF 276
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 277 GTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQY 328
|
|
| UNIPROTKB|F1PYB6 HIBADH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 149/291 (51%), Positives = 188/291 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 110 IEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMDA 157
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +A
Sbjct: 158 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 217
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 218 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
+ LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 278 GATLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q2HJD7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 149/291 (51%), Positives = 188/291 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 110 IEAYSGANGILK--KVKKGSLLIDSSTIDPMVSKELAKEV------EKMGA----VFMDA 157
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G G AAKICNNL +A
Sbjct: 158 PVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLA 217
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 218 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
+ LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 278 GTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|P31937 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 148/291 (50%), Positives = 187/291 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 110 IEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMDA 157
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +A
Sbjct: 158 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 217
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 218 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 278 GTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q5R5E7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 148/291 (50%), Positives = 187/291 (64%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 50 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 109
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 110 IEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA----VFMDA 157
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +A
Sbjct: 158 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 217
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 218 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 277
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 278 GATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| RGD|708399 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 147/292 (50%), Positives = 190/292 (65%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+K GY + ++DV +V K F + G +P +VAE +D +ITMLPSS +
Sbjct: 49 MGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNS 108
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK + V +DA
Sbjct: 109 IEVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA----VFMDA 156
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G+G +AKICNN+ +A
Sbjct: 157 PVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLA 216
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM+GVP+S NY GGF
Sbjct: 217 ISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGF 276
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 277 GTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQY 328
|
|
| ZFIN|ZDB-GENE-040426-1582 hibadhb "3-hydroxyisobutyrate dehydrogenase b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 145/291 (49%), Positives = 184/291 (63%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+K GY + DV K ++G ++P +VA+ +D +ITMLPS+ +V
Sbjct: 43 MGNPMAKNLIKHGYPVIATDVFPESCKELQELGAQILDSPADVADKADRIITMLPSNPNV 102
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+DVY GPNG+L+ + LLIDSSTIDP S+ ++ A EK + V + A
Sbjct: 103 VDVYTGPNGILK--KVKKGSLLIDSSTIDPAVSKEMAVAA------EKLGA----VFMGA 150
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG E+ + AAK L MG N +YCG G G AAKICNN+ +A
Sbjct: 151 PVSGGVGAATSGKLTFMVGGPEEEFNAAKELLSCMGANVVYCGQVGTGQAAKICNNMLLA 210
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+ M+G +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP++ NY GGF
Sbjct: 211 IGMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGGF 270
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
+ LM KDL LA SA L S A IY +C G+ +KDFS VFQ
Sbjct: 271 GTTLMTKDLGLAQNSATNTKTPVLLGSVAHQIYRMMCGRGYANKDFSSVFQ 321
|
|
| ZFIN|ZDB-GENE-040801-264 hibadha "3-hydroxyisobutyrate dehydrogenase a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 144/291 (49%), Positives = 181/291 (62%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+K GY + D K D G ++P EVAE +D +ITMLPSS +V
Sbjct: 43 MGTPMARNLLKNGYPVIATDAFPESCKELQDSGAQILDSPAEVAEKADRIITMLPSSPNV 102
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++VY G N +L+ + LLIDSSTIDP S+ ++ A EK + V +DA
Sbjct: 103 IEVYTGSNSILR--KVKKGTLLIDSSTIDPAVSKEMAVAA------EKMGA----VFMDA 150
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA LTF+VGG E+ Y AA+ L MG N +YCG G+G AAKICNN+ +A
Sbjct: 151 PVSGGVGAASLAKLTFLVGGVEEEYNAAQELLTCMGANVVYCGQVGSGQAAKICNNMLLA 210
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+ MLG +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP++ NY GGF
Sbjct: 211 IGMLGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGGF 270
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
+ LMAKDL A +A PL S A +Y +C G+ +KDFS VFQ
Sbjct: 271 ITTLMAKDLGFAQNTATSTRTPIPLGSLAHQVYRTMCARGYSNKDFSSVFQ 321
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0ABQ3 | GARR_ECOL6 | 1, ., 1, ., 1, ., 6, 0 | 0.3537 | 0.91 | 0.9285 | yes | no |
| P28811 | MMSB_PSEAE | 1, ., 1, ., 1, ., 3, 1 | 0.3966 | 0.95 | 0.9563 | yes | no |
| Q9V8M5 | 3HIDH_DROME | 1, ., 1, ., 1, ., 3, 1 | 0.4310 | 0.92 | 0.8518 | yes | no |
| Q5R5E7 | 3HIDH_PONAB | 1, ., 1, ., 1, ., 3, 1 | 0.5068 | 0.9333 | 0.8333 | yes | no |
| P63935 | MMSB_MYCTU | 1, ., 1, ., 1, ., 3, 1 | 0.3866 | 0.9333 | 0.9523 | yes | no |
| P63936 | MMSB_MYCBO | 1, ., 1, ., 1, ., 3, 1 | 0.3866 | 0.9333 | 0.9523 | yes | no |
| Q9SUC0 | 3HIDH_ARATH | 1, ., 1, ., 1, ., 3, 1 | 0.7566 | 1.0 | 0.8645 | yes | no |
| Q54CX6 | 3HIDH_DICDI | 1, ., 1, ., 1, ., 3, 1 | 0.4810 | 0.9233 | 0.8629 | yes | no |
| P29266 | 3HIDH_RAT | 1, ., 1, ., 1, ., 3, 1 | 0.5034 | 0.9333 | 0.8358 | yes | no |
| Q9XTI0 | 3HIDH_CAEEL | 1, ., 1, ., 1, ., 3, 1 | 0.4387 | 0.9266 | 0.9297 | yes | no |
| P31937 | 3HIDH_HUMAN | 1, ., 1, ., 1, ., 3, 1 | 0.5068 | 0.9333 | 0.8333 | yes | no |
| O34948 | YKWC_BACSU | 1, ., 1, ., -, ., - | 0.3208 | 0.9133 | 0.9513 | yes | no |
| Q99L13 | 3HIDH_MOUSE | 1, ., 1, ., 1, ., 3, 1 | 0.5136 | 0.9333 | 0.8358 | yes | no |
| Q2HJD7 | 3HIDH_BOVIN | 1, ., 1, ., 1, ., 3, 1 | 0.5102 | 0.9333 | 0.8333 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 300 | |||
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 1e-107 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 2e-86 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 7e-56 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 1e-52 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 3e-48 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 6e-37 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 2e-35 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 5e-27 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 1e-21 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 1e-10 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 1e-09 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 1e-09 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 1e-07 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 312 bits (800), Expect = e-107
Identities = 134/293 (45%), Positives = 180/293 (61%), Gaps = 12/293 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA+NL+KAG+ + V D+ + ++ G +P E AE +D VITMLP+ HV
Sbjct: 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHV 66
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+ VY+G G+L + LLID STIDP ++R ++ + V +DA
Sbjct: 67 ISVYSGDEGILP--KVAKGSLLIDCSTIDPDSARKLAELAAA----------HGAVFMDA 114
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV A AGTLTFMVGG + + AA+P+ MG+N ++CG G G AAKICNN+ +
Sbjct: 115 PVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLG 174
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG+ LG+ L +I N+SS RCWSSD+YNPVPGVM PAS Y GGF
Sbjct: 175 ISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGF 234
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
+ LM KDL LA +AK G PL + A+ +Y+ + GH KDFS V Q
Sbjct: 235 GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 259 bits (665), Expect = 2e-86
Identities = 114/294 (38%), Positives = 166/294 (56%), Gaps = 20/294 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFEVAEASDVVITMLPSSSH 59
MG MA+NL+KAG+++ V++ + G +P E A +DVVITMLP +
Sbjct: 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAA 70
Query: 60 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
V V G NGLL+G ++ID STI P+T+R ++AA L K LD
Sbjct: 71 VRAVLFGENGLLEG--LKPGAIVIDMSTISPETARELAAA-----LAAKGLE-----FLD 118
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSGGV A AGTLT MVGG +A++ AKP+ +MGKN ++ G G G AAK+ NN+ +
Sbjct: 119 APVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILL 178
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
A ++ ++EAL L + G+ + ++++ +A W ++Y P M ++ G
Sbjct: 179 AGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP---RM----LEGDFSPG 231
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
FA LM KDL LAL +AKE+G PLT+ A ++YAK G +DFS + +
Sbjct: 232 FAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLL 285
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 7e-56
Identities = 103/294 (35%), Positives = 150/294 (51%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG M+ NL+KAGY + V+D N + G T T VAE DV+ITMLP+S HV
Sbjct: 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHV 72
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
+V G NG+++G +P ++ID S+I P SR I+AA LK K MLD
Sbjct: 73 KEVALGENGIIEG---AKPGTVVIDMSSIAPLASREIAAA-----LKAK-----GIEMLD 119
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSGG A GTL+ MVGG + + L +M + ++ G G G K+ N + +
Sbjct: 120 APVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIV 179
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
A+++ +SEAL L G++ + + + A D+ P VM+ RN+ G
Sbjct: 180 ALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDA--KAPMVMD-----RNFKPG 232
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F L KDL AL ++ VG PLT+ ++ L +G + D S + +Y
Sbjct: 233 FRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYY 286
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 1e-52
Identities = 103/293 (35%), Positives = 148/293 (50%), Gaps = 19/293 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG M+ NL KAGY++ V + V G T ET +V E +DV+ TM+P S V
Sbjct: 10 MGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQV 69
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G NG+++ + + L+D S+I P S+ + AV KEK LDA
Sbjct: 70 EEVAFGENGIIE--GAKPGKTLVDMSSISPIESKRFAKAV-----KEKGID-----YLDA 117
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGG + A GTL+ MVGG + + KPLF ++GKN + GG G+G K+ N + +A
Sbjct: 118 PVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVA 177
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+++ VSEAL G+ + + L A + V++ R + GF
Sbjct: 178 LNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGER--VID-----RTFKPGF 230
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
L KDLNLAL SAK VG + P T+ Q+++ L NG D S + Q
Sbjct: 231 RIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQAL 283
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 3e-48
Identities = 64/165 (38%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+KAGY + V++ ++ G +P E ++DVVITM+P+ + V
Sbjct: 11 MGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVVITMVPAGAAV 70
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
V G +GLL G ++P ++ID ST DP +R + L EK LD
Sbjct: 71 DAVILGEDGLLPG---LKPGDIIIDGSTSDPDDTRRRAKE-----LAEK-----GIHFLD 117
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 164
APVSGG AEAGTL+ MVGG E+A++ KP+ +MG + G
Sbjct: 118 APVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIG 162
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 6e-37
Identities = 94/291 (32%), Positives = 145/291 (49%), Gaps = 20/291 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL +AG+++ V + ++ S +G + ET +V EASD++ M+P + V
Sbjct: 11 MGTPMAINLARAGHQLHVTTIGPVADELLS-LGAVSVETARQVTEASDIIFIMVPDTPQV 69
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G NG + S++ + ++D S+I P ++ + V+ LDA
Sbjct: 70 EEVLFGENGCTKA--SLKGKTIVDMSSISPIETKRFARQVNEL----------GGDYLDA 117
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGG + A GTL+ MVGG E ++ KPLF +GKN GG G+G K+ N + +A
Sbjct: 118 PVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVA 177
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+++ VSEAL G + + L ++S V G R + GF
Sbjct: 178 LNIEAVSEALLFASKAGADPVRVRQALMGG----FASSRILEVHGERM---IKRTFNPGF 230
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291
L KDLNLAL SAK + ++ P T+ Q+++ NG D S + Q
Sbjct: 231 KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQ 281
|
Length = 292 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-35
Identities = 90/293 (30%), Positives = 148/293 (50%), Gaps = 20/293 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MASNL+K G+++ V DVN + D G +P + A ++ VITMLP+ V
Sbjct: 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLV 71
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
V G NG+ +G + R L+ID STI P + + A ++ K S M+D
Sbjct: 72 RSVLFGENGVCEGLS--RDALVIDMSTIHPLQTDKLIAD-----MQAKGFS-----MMDV 119
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PV A GTL + GG+ + + A P+ ++MG I GG G G K+ NN M+
Sbjct: 120 PVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNY-MS 178
Query: 181 VSMLGVS-EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
+++ +S EA L ++LG+S K+++ ++A + P V++G +
Sbjct: 179 IALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWP-NKVLKG-----DLSPA 232
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292
F L KDL +AL A ++ V PL + ++++Y++ G +D+S + +
Sbjct: 233 FMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQ 285
|
Length = 296 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-27
Identities = 75/278 (26%), Positives = 132/278 (47%), Gaps = 26/278 (9%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MGF MAS+L+K+ + + +DV + F + G +P EVA+ DV++ M+ +
Sbjct: 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQA 394
Query: 61 LDVYNGPNG---LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK-KDSWENPV 116
+V G G L G S+ + SST+ P V L+ + ++ +
Sbjct: 395 ENVLFGDLGAVSALPAGASI-----VLSSTVSP-------GFVIQ--LERRLENEGRDIK 440
Query: 117 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICN 175
++DAPVSGGV A GTLT M G+++A ++A + ++ K + GG G G+ K+ N
Sbjct: 441 LVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVN 500
Query: 176 NLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRN 235
L V + +EA+ G LG++ L I++++ W + N VP +++ +
Sbjct: 501 QLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFE--NRVPHMLDN-----D 553
Query: 236 YGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 273
Y A + KDL + + L++ A ++
Sbjct: 554 YTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLF 591
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-21
Identities = 69/288 (23%), Positives = 133/288 (46%), Gaps = 24/288 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
+ F +AS+L+++G+K+ +++ +M+ F ++G ++P E A+ + ++ +L V
Sbjct: 15 LSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQV 74
Query: 61 LDVYNGPNGLLQG--GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 118
DV+ G G +G +V ++ STI P + + K+ + E ++
Sbjct: 75 DDVFFGDEGAAKGLQKGAV----ILIRSTILPLQLQKLE--------KKLTERKEQIFLV 122
Query: 119 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-IYCGGAGNGAAAKICNNL 177
DA VS G+ G L + G DA A+P +M + + G G G+ K+ N L
Sbjct: 123 DAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNEL 182
Query: 178 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYG 237
+ ++ +EA+ LG GI + I+++++ W N VP +++ +Y
Sbjct: 183 LEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWI--FKNHVPLLLKD-----DYI 235
Query: 238 GGFASKLMAKDLNLALASAKEVGVDCPLTSQA--QDIYAKLCENGHDS 283
G ++ ++L + L AK + PL + A Q I G D+
Sbjct: 236 EGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDT 283
|
Length = 1378 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 1e-10
Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 49/192 (25%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---VVITMLPSS 57
MG MA L++ G+++ +D N ++ ++ G ++ E+ VV M+P+
Sbjct: 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAG 70
Query: 58 SHVLDVYNGPNGLLQ-------GGNS------VRPQLLIDSSTIDPQTSRNISAAVSNCI 104
+ LL GGNS R +LL + I
Sbjct: 71 EITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELL---------AEKGIH------- 114
Query: 105 LKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNT--I 160
+D SGGV E G M+GG ++A + +P+F L+ +
Sbjct: 115 ------------FVDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFKALAPRAEDGYL 161
Query: 161 YCGGAGNGAAAK 172
+ G G G K
Sbjct: 162 HAGPVGAGHFVK 173
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDVVITMLPSS 57
MG + L+ G+ + +DVN ++ D G + E+ A +V M+P+
Sbjct: 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAG 70
Query: 58 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 117
V + LL G+ V ID S + +L EK +
Sbjct: 71 DITDAVIDDLAPLLSAGDIV----------IDGGNSNYKDSLRRAKLLAEKGIHF----- 115
Query: 118 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNT-IYCGGAGNGAAAKIC 174
LD SGGV AE G M+GG E+A + +P+F L+ G++ +YCG +G+G K+
Sbjct: 116 LDVGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMV 174
Query: 175 NN 176
+N
Sbjct: 175 HN 176
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 22/182 (12%)
Query: 1 MGFRMASNLMKAGYKMAVHDVN---CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 57
MG MA L + G+++ +DVN +V + E EA + M+P+
Sbjct: 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAG 70
Query: 58 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 117
V LL G+ V +D SR L E+ +
Sbjct: 71 EVTESVIKDLYPLLSPGDIV----------VDGGNSRYKDDLRRAEELAERGIHY----- 115
Query: 118 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKIC 174
+D SGGV G MVGG ++ Y +P+F ++ G ++ G G+G K+
Sbjct: 116 VDCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV 174
Query: 175 NN 176
+N
Sbjct: 175 HN 176
|
Length = 299 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 117 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG---KNTIYCGGAGNGAAAKI 173
+LD SGGV E G FM+GG +A+ A+PLF + + +YCG G+G K+
Sbjct: 114 LLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKM 172
Query: 174 CNN 176
+N
Sbjct: 173 VHN 175
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.97 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.96 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.95 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.94 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.94 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.94 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.93 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.92 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.92 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.91 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.89 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.89 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.87 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.86 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.85 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.85 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.81 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.81 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.79 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.77 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.75 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.74 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.73 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.7 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.69 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.69 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.69 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.68 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.66 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.66 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.65 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.64 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.64 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.63 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.63 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.59 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.58 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.57 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.56 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.55 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.54 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.53 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.51 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.5 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.5 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.49 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.48 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.44 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.43 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.42 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.39 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.38 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.37 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.36 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.35 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.32 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.3 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.27 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.26 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.25 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.22 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.2 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.2 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.18 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.18 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.15 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.11 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.1 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.1 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.03 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.02 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.01 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.01 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.01 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.99 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.98 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.94 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.92 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.85 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.77 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.66 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.66 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.58 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.55 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.53 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.45 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.43 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.4 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.39 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.3 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.29 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.26 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.26 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.22 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.21 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.2 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.16 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.13 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.12 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.0 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.99 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.94 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.91 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.9 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.81 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.76 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.71 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 97.64 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.63 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.57 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.56 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.52 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.52 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.49 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.44 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.36 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.27 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.24 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.2 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.19 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.18 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.16 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.14 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.13 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 97.05 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.05 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.02 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.02 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.02 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.99 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.95 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.91 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.76 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.74 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 96.74 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.7 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.69 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 96.68 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.68 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.63 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.6 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.6 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.52 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.5 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.5 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.48 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.47 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.38 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 96.37 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 96.33 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.33 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.28 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.21 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.12 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.05 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.03 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 95.97 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.94 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.9 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 95.88 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.83 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 95.82 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.8 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 95.65 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.62 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.54 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.53 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.52 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 95.5 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.33 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.32 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 95.32 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.32 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.25 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.22 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.14 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 95.12 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.05 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 94.92 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 94.81 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 94.81 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.81 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 94.8 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 94.76 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 94.75 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.72 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.66 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.63 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.63 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.59 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 94.52 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 94.5 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 94.5 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 94.49 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.46 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.46 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.42 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.42 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 94.42 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.36 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.36 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 94.33 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.25 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.24 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 94.22 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 94.18 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.11 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.08 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.01 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 93.95 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.94 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 93.93 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.83 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.82 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 93.81 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.8 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 93.79 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.64 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.47 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.44 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 93.36 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 93.29 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 93.29 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 93.11 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 93.06 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 93.02 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 92.98 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.91 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 92.79 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 92.79 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.53 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 92.49 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.43 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 92.4 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 92.4 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 92.32 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 92.26 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 92.02 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 91.93 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 91.76 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.66 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.63 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 91.61 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 91.37 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 91.28 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 91.27 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.19 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 91.1 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 90.91 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 90.88 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 90.67 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.48 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 90.42 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 90.4 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 89.86 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 89.81 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 89.8 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.24 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 89.19 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 89.06 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 88.96 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 88.95 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 88.8 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 88.43 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 88.43 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 88.25 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 88.22 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 88.06 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 87.94 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 87.93 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 87.72 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 87.71 | |
| PF05222 | 136 | AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal | 87.42 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 87.37 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 87.18 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 86.96 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 86.75 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 86.71 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 86.6 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 86.56 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 86.43 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 86.41 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 86.4 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 86.37 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 86.33 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 86.25 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 86.03 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 86.01 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 85.85 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 85.4 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 85.26 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 85.24 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.06 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 85.03 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 84.97 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 84.91 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 84.88 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 84.71 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.63 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 84.56 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 84.55 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 84.11 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 84.02 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 84.01 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 83.81 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 83.79 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 83.71 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 83.65 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.62 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 83.61 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 83.52 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 83.4 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 83.35 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 83.34 | |
| PRK08643 | 256 | acetoin reductase; Validated | 83.24 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.11 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 82.95 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 82.91 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 82.8 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 82.66 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 82.59 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 82.31 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 82.3 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 82.1 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 82.09 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 81.82 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 81.59 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 81.5 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 81.48 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 81.47 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 81.26 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 81.18 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 81.11 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 81.05 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 81.01 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 80.96 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 80.76 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 80.55 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 80.4 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 80.39 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 80.15 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 80.12 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 80.09 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 80.03 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 80.01 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=386.37 Aligned_cols=275 Identities=40% Similarity=0.640 Sum_probs=260.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.+||++|.++||+|++|||++++ .+.+.+.|+..+.++.|+++++|+||+|||++.++++|+.+..+++++ .++|
T Consensus 11 MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~--~~~G 88 (286)
T COG2084 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEG--LKPG 88 (286)
T ss_pred hhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhc--CCCC
Confidence 9999999999999999999999999 666667799999999999999999999999999999999988888876 5678
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCe
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 159 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~ 159 (300)
+++||+||++|..++++++.+.+. |.+|+|+||+|++..+..|++++++||+++.|++++++|+.+|.++
T Consensus 89 ~i~IDmSTisp~~a~~~a~~~~~~----------G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i 158 (286)
T COG2084 89 AIVIDMSTISPETARELAAALAAK----------GLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNI 158 (286)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhc----------CCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCce
Confidence 999999999999999999999863 3799999999999999999999999999999999999999999999
Q ss_pred EeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022237 160 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239 (300)
Q Consensus 160 ~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (300)
+++|+.|.++.+|+++|.+.+.++.+++|++.+++++|+|++.+.++++.+.+.||.++++.+ ++.+++|+|+
T Consensus 159 ~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~-------~m~~~~~~p~ 231 (286)
T COG2084 159 VHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP-------RMLEGDFSPG 231 (286)
T ss_pred EEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------hhhcCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999887653 3568899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHh
Q 022237 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 294 (300)
Q Consensus 240 ~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (300)
|.++++.||++++.+++++.|+++|+...+.++|+.+.++|+|++|++++++.|+
T Consensus 232 F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 232 FAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999874
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=360.19 Aligned_cols=280 Identities=49% Similarity=0.752 Sum_probs=262.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++|+.+|.++||.|++|||+.+++++|.+.|++.+.+|.|+++.+|+||+|||++.++++++....+++++ .++++
T Consensus 46 MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g--~~~g~ 123 (327)
T KOG0409|consen 46 MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSG--IRPGK 123 (327)
T ss_pred chHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceee--ccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888876 33444
Q ss_pred EE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCe
Q 022237 81 LL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 159 (300)
Q Consensus 81 iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~ 159 (300)
.. ||+||++|.+++++++.+..+ +.+|+|+||+|+...++.|+++|++|||++.++++.++|+.+|+++
T Consensus 124 ~~~vDmSTidp~~s~ei~~~i~~~----------~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~ 193 (327)
T KOG0409|consen 124 KATVDMSTIDPDTSLEIAKAISNK----------GGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNV 193 (327)
T ss_pred ceEEeccccCHHHHHHHHHHHHhC----------CCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceE
Confidence 44 999999999999999998763 2699999999999999999999999999999999999999999999
Q ss_pred EeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022237 160 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239 (300)
Q Consensus 160 ~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (300)
+++|..|.++.+|+|+|.+.+..|..++|++.|+++.|+|+..++++++.+. .|.+..++|+|+++ +++|.|+
T Consensus 194 ~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~--~~S~~~~~~~p~m~-----k~dy~p~ 266 (327)
T KOG0409|consen 194 VFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGR--CWSSMFYNPVPGML-----KGDYNPG 266 (327)
T ss_pred EEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC--cccHHHhCcCchhh-----cCCCCCc
Confidence 9999999999999999999999999999999999999999999999999854 45556778888865 5799999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCCCC
Q 022237 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 299 (300)
Q Consensus 240 ~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 299 (300)
|.++++.||++++...++..+.|+|+...+.++|+.+.+.|+|+.|++++|++++..++.
T Consensus 267 f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 267 FALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred chHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999887764
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=347.15 Aligned_cols=281 Identities=48% Similarity=0.800 Sum_probs=257.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|.++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||++.++++++....++.+. .++++
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~--~~~g~ 84 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK--VAKGS 84 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc--CCCCC
Confidence 8999999999999999999999999999999998888899999999999999999987889998654445543 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++.+.+.++ +++|+|+|++|++..+..|++++++||+++.+++++++|+.+|++++
T Consensus 85 ~vid~st~~p~~~~~~~~~~~~~----------g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~ 154 (288)
T TIGR01692 85 LLIDCSTIDPDSARKLAELAAAH----------GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIV 154 (288)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999988752 37899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.++.+|+++|++.+.++.+++|++.+++++|+|+++++++++.+.+.+|....+.+.+++....+.+++|+++|
T Consensus 155 ~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f 234 (288)
T TIGR01692 155 HCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGF 234 (288)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999888887776666555554445678999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
++..+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++++
T Consensus 235 ~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 235 GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999976
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=346.41 Aligned_cols=275 Identities=33% Similarity=0.506 Sum_probs=252.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+|+++|.++||+|++|||++. .+++.+.|+..+.++.++++++|+||+|||++.++++++....++++. ..+|+
T Consensus 11 MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~--~~~g~ 87 (292)
T PRK15059 11 MGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKA--SLKGK 87 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhcc--CCCCC
Confidence 899999999999999999999985 577777888888899999999999999999999999998765556554 45679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++.+.+.++ ++.|+|+|++|++..+..|++++++||+++.+++++++|+.+|.+++
T Consensus 88 ivvd~sT~~p~~~~~~~~~~~~~----------G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~ 157 (292)
T PRK15059 88 TIVDMSSISPIETKRFARQVNEL----------GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNIT 157 (292)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcE
Confidence 99999999999999999998753 37899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|+++.+|+++|++.+.++.++.|++.+++++|+|+++++++++.+.+.||.++.+.+ ++.+++|+++|
T Consensus 158 ~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f 230 (292)
T PRK15059 158 LVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMIKRTFNPGF 230 (292)
T ss_pred EeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------hhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888887665543 25578999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
+++.+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++++.+
T Consensus 231 ~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 231 KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=338.60 Aligned_cols=277 Identities=30% Similarity=0.453 Sum_probs=252.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++||.+|+++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++.+++.++....+++.. .++++
T Consensus 12 mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~--l~~g~ 89 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEG--LSRDA 89 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhc--CCCCC
Confidence 8999999999999999999999999999999898888899999999999999999998899998776666554 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
++||+||++|.+++++.+.+.++ ++.|+|+|++|++..+..|++++++||+++.+++++++|+.+|.+++
T Consensus 90 lvid~sT~~p~~~~~l~~~l~~~----------g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~ 159 (296)
T PRK15461 90 LVIDMSTIHPLQTDKLIADMQAK----------GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELI 159 (296)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeE
Confidence 99999999999999999988753 27899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.|+.+|+++|++...++.+++|++.+++++|+|++.++++++.+...++..... .+ .++.+++|+++|
T Consensus 160 ~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~--~~----~~~~~~~~~~~f 233 (296)
T PRK15461 160 NAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTT--WP----NKVLKGDLSPAF 233 (296)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcc--cc----chhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999876555443322 11 125678999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
+++.+.||++++.+++++.|+++|+.+.+.++|+.++++|+|++|++++++++.+
T Consensus 234 ~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 234 MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998865
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=318.65 Aligned_cols=277 Identities=36% Similarity=0.539 Sum_probs=250.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||.+|+++||+|++|||++++.+.+.+.|...+.++.++++++|+||+|+|++.+++.++....+++.. .++++
T Consensus 10 mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~--~~~g~ 87 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEG--AKPGK 87 (291)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhc--CCCCC
Confidence 8999999999999999999999999999999888888899999999999999999988888887543334433 35668
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..+++.+++||+++.+++++++++.++.+++
T Consensus 88 iivd~st~~~~~~~~l~~~l~~~----------g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~ 157 (291)
T TIGR01505 88 TLVDMSSISPIESKRFAKAVKEK----------GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIV 157 (291)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999988752 37999999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.++.+|+++|++.+.++.+++|++.+++++|+|++++.++++.+.+.+|.++...+ ++.+++|.++|
T Consensus 158 ~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f 230 (291)
T TIGR01505 158 LVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RVIDRTFKPGF 230 (291)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hhhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999988877776554322 24578999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcC
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 296 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (300)
+++++.||+.++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++++.+.
T Consensus 231 ~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 231 RIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred chHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=370.71 Aligned_cols=278 Identities=22% Similarity=0.381 Sum_probs=257.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|.++||+|++|||++++++++.+.|+..++++.|++++||+||+|||++.++++|+.+..+++++ ..+|+
T Consensus 15 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~--l~~g~ 92 (1378)
T PLN02858 15 LSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKG--LQKGA 92 (1378)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhc--CCCcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999776667765 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.++ ++ ++.|+|+|++|++..+..|++++|+||+++.+++++++|+.+|.+++
T Consensus 93 iivd~STi~p~~~~~la~~l~~~-----g~---~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 93 VILIRSTILPLQLQKLEKKLTER-----KE---QIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc-----CC---ceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 99999999999999999998753 10 16899999999999999999999999999999999999999999987
Q ss_pred ee-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022237 161 YC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239 (300)
Q Consensus 161 ~~-g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (300)
++ |+.|+|+.+|+++|++.+.++.++.|++.+++++|+|++.++++++.+++.||.+..+.+ . +.+++|.++
T Consensus 165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~--~-----~~~~d~~~~ 237 (1378)
T PLN02858 165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVP--L-----LLKDDYIEG 237 (1378)
T ss_pred EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhh--H-----hhcCCCCCC
Confidence 65 889999999999999999999999999999999999999999999999999888665432 2 457899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 240 ~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
|+++.+.||++++.+++++.|+++|+...+.++|+.+.+.|+|++|++++++++.+
T Consensus 238 F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 238 RFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998854
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=315.30 Aligned_cols=276 Identities=35% Similarity=0.504 Sum_probs=250.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|++|++.|++|++|||++++.+++.+.|...+.++.++++++|+||+|+|++.+++.++....++++. .++++
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~--~~~g~ 90 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEG--AKPGT 90 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhc--CCCCc
Confidence 7999999999999999999999999999988888888899999999999999999988888887654444443 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|+|+||++|.+++++.+.+.+. +++|+++|++++++.+..+++.+++||+++.+++++++|+.++.+++
T Consensus 91 iiid~st~~~~~~~~l~~~~~~~----------g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 91 VVIDMSSIAPLASREIAAALKAK----------GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999988652 37899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.|+.+|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.|+.++.+.+ ++..++|.++|
T Consensus 161 ~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~d~~~~f 233 (296)
T PRK11559 161 HTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGF 233 (296)
T ss_pred EeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch-------HhhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999988877776554432 24567999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
+++...||++++.+++++.|+++|+++.+.++|+.+.+.|+|++|++++++++.+
T Consensus 234 ~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 234 RIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998865
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=355.43 Aligned_cols=278 Identities=26% Similarity=0.411 Sum_probs=254.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|+++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||++.++++|+....++++. ..+|+
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~--l~~g~ 412 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSA--LPAGA 412 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhc--CCCCC
Confidence 8999999999999999999999999999999998888899999999999999999999999998765566654 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.+. .. +++|+|+|++|++..+..|++++++||+++.+++++++|+.+|.+++
T Consensus 413 ivVd~STvsP~~~~~la~~l~~~----g~----g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 413 SIVLSSTVSPGFVIQLERRLENE----GR----DIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred EEEECCCCCHHHHHHHHHHHHhh----CC----CcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEE
Confidence 99999999999999999988641 12 38999999999999999999999999999999999999999999988
Q ss_pred ee-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC
Q 022237 161 YC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239 (300)
Q Consensus 161 ~~-g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (300)
++ |++|+|+.+|+++|++.+.++.+++|++.+++++|+|+++++++++.+.+.||.+..+. +. +.+++|+++
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~--~~-----~l~~d~~~~ 557 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRV--PH-----MLDNDYTPY 557 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhcc--ch-----hhcCCCCCC
Confidence 75 56999999999999999999999999999999999999999999999998888766443 22 457899999
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 240 ~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
|+++.+.||++++.+++++.|+++|+...+.++|+.+.++|+|++|++++++++.+
T Consensus 558 f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 558 SALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998864
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=301.82 Aligned_cols=255 Identities=19% Similarity=0.246 Sum_probs=222.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCC---CCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVP---TKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~---~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||.+||++|+++||+|++|||++++++++.+. |+. .+.+++|+++. +|+||+|||++.++++|+.+ +
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~g---l 93 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKA---L 93 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHH---H
Confidence 99999999999999999999999999998764 543 67899999876 99999999999999999843 4
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHH
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 150 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ 150 (300)
++. ..+|++|||+||+.|.+++++.+.+.++ |++|+++||+|++..+..|+ ++|+||++++++++++
T Consensus 94 ~~~--l~~G~iiID~sT~~~~~t~~~~~~l~~~----------Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~p 160 (493)
T PLN02350 94 SEY--MEPGDCIIDGGNEWYENTERRIKEAAEK----------GLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIED 160 (493)
T ss_pred Hhh--cCCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHH
Confidence 443 3467899999999999999999988753 38999999999999999999 9999999999999999
Q ss_pred HHHhcCC------CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HHhcCCCccccccC
Q 022237 151 LFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDSY 220 (300)
Q Consensus 151 ll~~lg~------~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~---~~~~~~~s~~~~~~ 220 (300)
+|+.++. .++|+|+.|+|+.+|+++|.+.+..+.+++|++.++++ .|+|++++.++ ++.+.+.||+.+..
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~ 240 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEIT 240 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHH
Confidence 9999995 48999999999999999999999999999999999999 59999999998 56777788876654
Q ss_pred CCCCCcccCCCCCC-CCCCCcchhhHHHHHH------HHHHHHHHcCCCchH-HHHHHHHHHHHHH
Q 022237 221 NPVPGVMEGVPASR-NYGGGFASKLMAKDLN------LALASAKEVGVDCPL-TSQAQDIYAKLCE 278 (300)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~~~-~~~~~~~~~~a~~ 278 (300)
.+. +..+ +|.++|.++...||+. ...+.+.++|+|+|+ ..++..++.+..+
T Consensus 241 ~~~-------l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 241 ADI-------FSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHH-------HhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 331 2233 4877899999999999 899999999999999 6677776655543
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=289.85 Aligned_cols=268 Identities=19% Similarity=0.266 Sum_probs=236.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+|+++|.++|++|++|||++++++.+.+.|+..+.++++++++ +|+||+|+|++..+++++.+ +.+. ..
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~---i~~~--l~ 85 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD---LYPL--LS 85 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH---Hhcc--CC
Confidence 8999999999999999999999999999988898888899998876 69999999999888888854 3332 24
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
++++|||+||++|.+++++.+.+.++ +++|+|+|++|++..+..|+ ++++||+++++++++++|+.+|.
T Consensus 86 ~g~ivid~st~~~~~~~~~~~~~~~~----------g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 86 PGDIVVDGGNSRYKDDLRRAEELAER----------GIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAP 154 (299)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHc----------CCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999988652 37999999999999999998 89999999999999999999997
Q ss_pred ---CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCccccccCCCCCCcccCCC
Q 022237 158 ---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP 231 (300)
Q Consensus 158 ---~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 231 (300)
+++|+|++|.++.+|+++|++.+.++.+++|++.++++.| +|+++++++++.++ +.|++++...+ . +
T Consensus 155 ~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~--~-----~ 227 (299)
T PRK12490 155 EGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVK--A-----L 227 (299)
T ss_pred cCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHH--H-----H
Confidence 7899999999999999999999999999999999999999 99999999999654 77777664433 1 2
Q ss_pred CCCCCCCCcchhhHHHHH---HHHHHHHHHcCCCchHHHHHH-HHHHHHHHcCCCCCchHHHHHHH
Q 022237 232 ASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 232 ~~~~~~~~~~~~~~~kd~---~~~~~~a~~~g~~~~~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
.++++ .+.++...||+ +++++++++.|+|+|++..+. .++....++|.|.+|++++.+++
T Consensus 228 ~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 291 (299)
T PRK12490 228 AEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQF 291 (299)
T ss_pred hhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhh
Confidence 23332 35789999998 899999999999999999996 99999999999999999999976
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=273.51 Aligned_cols=267 Identities=18% Similarity=0.258 Sum_probs=229.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+||++|+++||+|++|||++++.+++.+.|+..+.+++++++. +|+||+|+|++..+++++.. +.+. ..
T Consensus 11 MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~---l~~~--l~ 85 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE---LAPL--LS 85 (301)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH---HHhh--CC
Confidence 8999999999999999999999999999998898888899998875 69999999998788888754 3322 24
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
+++++||+||+.|..++++.+.+.+. +++|+|+|++|++..+..|. ++++||+++++++++++|+.++.
T Consensus 86 ~g~ivid~st~~~~~~~~~~~~~~~~----------g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 86 PGDIVIDGGNSYYKDDIRRAELLAEK----------GIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAP 154 (301)
T ss_pred CCCEEEeCCCCChhHHHHHHHHHHHc----------CCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcc
Confidence 56899999999999999999888752 38999999999999999996 89999999999999999999998
Q ss_pred ----CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCC
Q 022237 158 ----NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 158 ----~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~--~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~ 230 (300)
+++++|+.|+++.+|+++|++.+..+.+++|++.++++ +|+|+++++++++.++ +.|++++...+.
T Consensus 155 ~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~------- 227 (301)
T PRK09599 155 RAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADA------- 227 (301)
T ss_pred cccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH-------
Confidence 89999999999999999999999999999999999999 9999999999999876 577776644321
Q ss_pred CCCCCCCCCcc-hhhHHHH---HHHHHHHHHHcCCCchHHHHHH-HHHHHHHHcCCCCCchHHHHHHH
Q 022237 231 PASRNYGGGFA-SKLMAKD---LNLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 231 ~~~~~~~~~~~-~~~~~kd---~~~~~~~a~~~g~~~~~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
+ .++ +.|. +....|| ++++.+.+.+.++++|.+.++. ..+....++|.+..|++++.+++
T Consensus 228 ~-~~~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 228 L-AED--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred H-hcC--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 1 122 2232 3334555 5899999999999999999955 46999999999999999999975
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=269.18 Aligned_cols=247 Identities=21% Similarity=0.259 Sum_probs=207.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||.+||++|+++||+|.+|||++++.+++.+. |+..+.+++|+++. +|+||+|||++.++++|+.+ +++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~---l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQ---LLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHH---HHh
Confidence 99999999999999999999999999999874 47788899999875 89999999999999999854 443
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
. ..+|++|||+||+.|..++++.+.+.++ |++|+++||+|++..+..|. ++|+||+++++++++++|
T Consensus 78 ~--l~~GdiiID~gn~~~~~t~~~~~~l~~~----------Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL 144 (459)
T PRK09287 78 L--LEKGDIIIDGGNSNYKDTIRREKELAEK----------GIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPIL 144 (459)
T ss_pred c--CCCCCEEEECCCCCHHHHHHHHHHHHhc----------CCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHH
Confidence 3 3456899999999999999999888752 38999999999999999998 999999999999999999
Q ss_pred HhcCCCe-------EeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccCC
Q 022237 153 LSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYN 221 (300)
Q Consensus 153 ~~lg~~~-------~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~ 221 (300)
+.++.++ +|+|+.|+|+.+||++|.+.++.+++++|++.+++ +.|++++++.+++ +.+.+.||+.+...
T Consensus 145 ~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~ 224 (459)
T PRK09287 145 EKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITA 224 (459)
T ss_pred HHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHh
Confidence 9999886 89999999999999999999999999999999999 5899999999888 57778888876543
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHH-------HHHHHHHHHHHcCCCchHHHHHH
Q 022237 222 PVPGVMEGVPASRNYGGGFASKLMAK-------DLNLALASAKEVGVDCPLTSQAQ 270 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~k-------d~~~~~~~a~~~g~~~~~~~~~~ 270 (300)
+. +..+|+..+..+--... .-+...+.+-++|+|.|.+....
T Consensus 225 ~~-------l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~Av 273 (459)
T PRK09287 225 DI-------LRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAV 273 (459)
T ss_pred HH-------HhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHH
Confidence 31 33455533222111111 22677788899999999887543
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=250.78 Aligned_cols=252 Identities=20% Similarity=0.254 Sum_probs=204.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHhh---cCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~e~~~---~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||++||++|+++||+|++|||++++++++.+. | +..+.+++|+++ ++|+||+|||++..+++++.++.+.+
T Consensus 12 MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L 91 (470)
T PTZ00142 12 MGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLL 91 (470)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhC
Confidence 89999999999999999999999999998764 5 335779999986 48999999999999999986543333
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 151 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~l 151 (300)
.+|++|||+||..+..++++.+.+.++ |++|+++|++|++..+..|. ++|+||+++++++++++
T Consensus 92 -----~~g~iIID~gn~~~~dt~~r~~~l~~~----------Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~pi 155 (470)
T PTZ00142 92 -----EKGDIIIDGGNEWYLNTERRIKRCEEK----------GILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDI 155 (470)
T ss_pred -----CCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 456899999999999999998888752 38999999999999999999 89999999999999999
Q ss_pred HHhcCCC------eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccCC
Q 022237 152 FLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYN 221 (300)
Q Consensus 152 l~~lg~~------~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~ 221 (300)
|+.++.+ ++|+|+.|+++.+||++|.+.++.+++++|++.+++ +.|++++++.+++ +.+...||+.+...
T Consensus 156 L~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~ 235 (470)
T PTZ00142 156 LEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITA 235 (470)
T ss_pred HHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 9999987 799999999999999999999999999999999998 7999999998888 46677788766432
Q ss_pred CCCCcccCCCCCCCCCC-CcchhhH------HHHHHHHHHHHHHcCCCchHHHHHH-HHHHH
Q 022237 222 PVPGVMEGVPASRNYGG-GFASKLM------AKDLNLALASAKEVGVDCPLTSQAQ-DIYAK 275 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~~~~------~kd~~~~~~~a~~~g~~~~~~~~~~-~~~~~ 275 (300)
.. + ...|-.. ++-++.. .-.-+...+.+-++|+|.|.+..+. .++.+
T Consensus 236 ~~---~----~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S 290 (470)
T PTZ00142 236 KI---L----AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNIS 290 (470)
T ss_pred HH---h----hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhh
Confidence 21 1 0111011 1112111 1123677888999999999988654 44433
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=241.48 Aligned_cols=246 Identities=22% Similarity=0.302 Sum_probs=208.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHh---hcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~---~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+|+++|.++||+|.+|||++++++++.+.|.....++.++. +++|+||+|||++ .+++++.++.+. ..
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~~l~~~-----l~ 84 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLEELAPT-----LE 84 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHHHHHhh-----CC
Confidence 89999999999999999999999999999998877777777654 4689999999998 999998654332 34
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
++++|||+||+.|..+.++.+.+.+. +++|+++|++|++..+..| +.+++||+++.+++++++|+.++.
T Consensus 85 ~g~ivid~st~~~~~t~~~~~~~~~~----------g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 85 KGDIVIDGGNSYYKDSLRRYKLLKEK----------GIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAP 153 (298)
T ss_pred CCCEEEECCCCCcccHHHHHHHHHhc----------CCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999988887652 3799999999999999999 589999999999999999999986
Q ss_pred ---CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCC
Q 022237 158 ---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP 231 (300)
Q Consensus 158 ---~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 231 (300)
.++|+|+.|+++.+|+++|.+.+..+.+++|++.++++. |+|++++.++++.++ ..||+++..... .
T Consensus 154 ~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~-------~ 226 (298)
T TIGR00872 154 EEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIA-------F 226 (298)
T ss_pred cCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHH-------H
Confidence 589999999999999999999999999999999999998 579999999999887 578876644321 1
Q ss_pred CCCCCCCCcchh-hHHHHHHHHHHHHHHcCCCchHHHHHH
Q 022237 232 ASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQ 270 (300)
Q Consensus 232 ~~~~~~~~~~~~-~~~kd~~~~~~~a~~~g~~~~~~~~~~ 270 (300)
.++++.+.|... ...+|.+.+...+.+.|+|+|.+.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 227 RESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred hcCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 223333445433 466788999999999999999999854
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=248.44 Aligned_cols=251 Identities=19% Similarity=0.262 Sum_probs=201.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---C--CCCCCCHHHHhh---cCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~---g--~~~~~~~~e~~~---~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||.+||++|+++||+|++|||++++++++.+. | +..+.+++++++ .+|+||+|||++..+++|+.++.+.
T Consensus 10 MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~-- 87 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPL-- 87 (467)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhh--
Confidence 89999999999999999999999999999876 2 456678888764 6899999999988999998643322
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
..++++|||+||+.|..+++..+.+.+. +++|+++|++|++..+..|. ++|+||+++++++++++|
T Consensus 88 ---L~~g~iIID~gns~~~~t~~~~~~l~~~----------gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L 153 (467)
T TIGR00873 88 ---LEKGDIIIDGGNSHYPDTERRYKELKAK----------GILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIF 153 (467)
T ss_pred ---CCCCCEEEECCCcCHHHHHHHHHHHHhc----------CCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHH
Confidence 3456899999999999988888877642 38999999999999999998 999999999999999999
Q ss_pred HhcCCC------eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccCCC
Q 022237 153 LSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYNP 222 (300)
Q Consensus 153 ~~lg~~------~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~ 222 (300)
+.++.+ ++|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+.+.||+.+...+
T Consensus 154 ~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~ 233 (467)
T TIGR00873 154 QKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITAD 233 (467)
T ss_pred HHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHH
Confidence 999987 489999999999999999999999999999999985 7999999999988 677778888765433
Q ss_pred CCCcccCCCCCCCCCCCcchhh------HHHHHHHHHHHHHHcCCCchHHHHHH-HHHH
Q 022237 223 VPGVMEGVPASRNYGGGFASKL------MAKDLNLALASAKEVGVDCPLTSQAQ-DIYA 274 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~------~~kd~~~~~~~a~~~g~~~~~~~~~~-~~~~ 274 (300)
. +. ++|-...+-++. -.-.-+...+.+-++|+|.|.+.... .++.
T Consensus 234 ~--~~-----~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~ 285 (467)
T TIGR00873 234 I--LK-----KKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYL 285 (467)
T ss_pred H--Hh-----ccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhc
Confidence 2 11 111111111111 01123677888899999999888553 4433
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-30 Score=235.83 Aligned_cols=246 Identities=16% Similarity=0.192 Sum_probs=193.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------------------CC-CCCCCCHHHHhhcCCEEEEecCChhh-
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVVITMLPSSSH- 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~~~e~~~~adiVii~vp~~~~- 59 (300)
||.++|..|+++||+|++||+++++++.+++ .| +..+.++.++++++|+||+|||++..
T Consensus 11 ~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~~ 90 (411)
T TIGR03026 11 VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLKE 90 (411)
T ss_pred hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCCC
Confidence 8999999999999999999999999988764 13 44556788889999999999998843
Q ss_pred --------hhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc
Q 022237 60 --------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 131 (300)
Q Consensus 60 --------~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~ 131 (300)
+.+++.+ +.+. .+++++||++||++|.+++++.+.+.+. ..|. ..+.+.|+.++|..+..
T Consensus 91 ~~~~d~~~v~~~~~~---i~~~--l~~g~lvi~~STv~pgt~~~l~~~~~~~----~~g~---~~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 91 DGSPDLSYVESAAET---IAKH--LRKGATVVLESTVPPGTTEEVVKPILER----ASGL---KLGEDFYLAYNPEFLRE 158 (411)
T ss_pred CCCcChHHHHHHHHH---HHHh--cCCCCEEEEeCcCCCCchHHHHHHHHHh----hcCC---CCCCCceEEECCCcCCC
Confidence 5555433 3322 2456899999999999999987554331 0110 01233444444444444
Q ss_pred Cce--------EEEeccCHHHHHHHHHHHHhcC-CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022237 132 GTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 202 (300)
Q Consensus 132 g~~--------~~~~~g~~~~~~~~~~ll~~lg-~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~ 202 (300)
|+. .+++|++++.+++++++|+.++ ..++++++++.++.+|+++|++.+.++++++|+..+|++.|+|+++
T Consensus 159 G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~ 238 (411)
T TIGR03026 159 GNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYE 238 (411)
T ss_pred CChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 554 7888899999999999999998 5788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 203 LTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 203 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
+.++++.+. ++..+.|.|+ |...++.||+.++...+++.|+++|+++++.++-+..
T Consensus 239 v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 239 VIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred HHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999987541 0223455564 4667899999999999999999999999998864443
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=202.98 Aligned_cols=151 Identities=42% Similarity=0.651 Sum_probs=133.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|.++||+|++|||++++++++.+.|+..+.|+.|+++++|+||+|||++.++++++.+.. +++. ..+|+
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i~~~--l~~g~ 88 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-ILAG--LRPGK 88 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-HGGG--S-TTE
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-Hhhc--cccce
Confidence 89999999999999999999999999999999999999999999999999999999999999998755 5554 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.+. +++|+|+|++|+++.+..|++++++||+++++++++++|+.++.+++
T Consensus 89 iiid~sT~~p~~~~~~~~~~~~~----------g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 89 IIIDMSTISPETSRELAERLAAK----------GVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp EEEE-SS--HHHHHHHHHHHHHT----------TEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred EEEecCCcchhhhhhhhhhhhhc----------cceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCce
Confidence 99999999999999999998753 38999999999999999999999999999999999999999999998
Q ss_pred -eeCC
Q 022237 161 -YCGG 164 (300)
Q Consensus 161 -~~g~ 164 (300)
++|+
T Consensus 159 ~~~G~ 163 (163)
T PF03446_consen 159 HYVGP 163 (163)
T ss_dssp EE-ES
T ss_pred eeeCc
Confidence 4575
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=192.77 Aligned_cols=253 Identities=22% Similarity=0.329 Sum_probs=206.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh---cCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~---~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||..|.++|.+.||+|.+||+|++.++++...|+..++|+.+.++ ...+|.++||....+..+++++.+.++
T Consensus 11 MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~----- 85 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLS----- 85 (300)
T ss_pred hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcC-----
Confidence 899999999999999999999999999999999998999888764 689999999998788888887666664
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
.|.+|||-.++....+++..+.+.++ +++|+|+-.+|+...++.|. .+|+||+++++++++++|+.+..
T Consensus 86 ~GDivIDGGNS~y~Ds~rr~~~l~~k----------gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 86 AGDIVIDGGNSNYKDSLRRAKLLAEK----------GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAP 154 (300)
T ss_pred CCCEEEECCccchHHHHHHHHHHHhc----------CCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCc
Confidence 45899999999999999988888763 38999999999999999998 89999999999999999999976
Q ss_pred ---CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCC
Q 022237 158 ---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVP 231 (300)
Q Consensus 158 ---~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 231 (300)
-..|+|+.|+++.+||++|-+.++.|++++|.+.+.++. .+|.+++.++++.++ ..||+++..... +.+
T Consensus 155 ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~A--f~~--- 229 (300)
T COG1023 155 GEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEA--FKK--- 229 (300)
T ss_pred CcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHH--Hhh---
Confidence 467999999999999999999999999999999999986 477889999999998 689986532110 000
Q ss_pred CCCCCCCCcchhhHHH---HHHHHHHHHHHcCCCchHHHHHH-HHHHHHHH
Q 022237 232 ASRNYGGGFASKLMAK---DLNLALASAKEVGVDCPLTSQAQ-DIYAKLCE 278 (300)
Q Consensus 232 ~~~~~~~~~~~~~~~k---d~~~~~~~a~~~g~~~~~~~~~~-~~~~~a~~ 278 (300)
..+++. +.-... +=+..++.+-++|+|.|++.... ..|++-.+
T Consensus 230 -d~~L~q---~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~ 276 (300)
T COG1023 230 -DPDLDQ---ISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQD 276 (300)
T ss_pred -CCCHHH---hcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccch
Confidence 001100 000000 11455677889999999988554 66666544
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=206.09 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=185.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-CCHHHH---------------hhcCCEEEEecCCh-------
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEV---------------AEASDVVITMLPSS------- 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~~~e~---------------~~~adiVii~vp~~------- 57 (300)
||.++|.+|+++||+|++||+++++++.++....... ..+++. +++||+||+|||++
T Consensus 14 ~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~ 93 (415)
T PRK11064 14 IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEP 93 (415)
T ss_pred hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCc
Confidence 8999999999999999999999999998654322111 122222 34899999999997
Q ss_pred --hhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhh----hccCCCCCceEEEec--cCCChHhh
Q 022237 58 --SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK----EKKDSWENPVMLDAP--VSGGVLAA 129 (300)
Q Consensus 58 --~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p--v~g~~~~~ 129 (300)
..+.+++.+ +.+. .++|++||++||++|.+++++...+.+.+.. ..+|....++++.+| +..+....
T Consensus 94 dl~~v~~~~~~---i~~~--l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~ 168 (415)
T PRK11064 94 DLTYVEAAAKS---IAPV--LKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMV 168 (415)
T ss_pred ChHHHHHHHHH---HHHh--CCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhh
Confidence 456655543 3332 3567899999999999999998877653100 000111236778899 55555555
Q ss_pred hcCceEEEecc-CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 130 EAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 130 ~~g~~~~~~~g-~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
..+++..++|| +++.+++++++|+.++..++++++++.|+.+|+++|++.+.++++++|+..+|++.|+|++++.++++
T Consensus 169 ~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 169 ELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred hhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 56666778898 99999999999999998888999999999999999999999999999999999999999999999987
Q ss_pred hcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 022237 209 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 272 (300)
Q Consensus 209 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~ 272 (300)
....- ....| .+||...|..||...+.. +.+.+.++++++.++
T Consensus 249 ~~~ri----~~l~p--------------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~ 291 (415)
T PRK11064 249 RHPRV----NILQP--------------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREV 291 (415)
T ss_pred cCCCc----ccCCC--------------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHH
Confidence 54311 11122 235556788999987743 556678888888765
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=209.34 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=184.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC----------------CCCCHHHHhhcCCEEEEecCCh------h
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----------------TKETPFEVAEASDVVITMLPSS------S 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----------------~~~~~~e~~~~adiVii~vp~~------~ 58 (300)
||.++|.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+|||++ .
T Consensus 17 vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vptp~~~~~~~ 94 (425)
T PRK15182 17 VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVPTPINTYKQP 94 (425)
T ss_pred chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCc
Confidence 89999999888 699999999999999998 4432 3445556789999999999998 3
Q ss_pred hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCC--CCCceEEEecc--CCChHhhhcCce
Q 022237 59 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--WENPVMLDAPV--SGGVLAAEAGTL 134 (300)
Q Consensus 59 ~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pv--~g~~~~~~~g~~ 134 (300)
+++.++....++.+. .++|++||++||+.|.+++++.+...+. ..|. ...+....+|. .++.......++
T Consensus 95 dl~~v~~a~~~i~~~--l~~g~lVI~~STv~pgtt~~~~~~~l~~----~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~ 168 (425)
T PRK15182 95 DLTPLIKASETVGTV--LNRGDIVVYESTVYPGCTEEECVPILAR----MSGMTFNQDFYVGYSPERINPGDKKHRLTNI 168 (425)
T ss_pred chHHHHHHHHHHHHh--cCCCCEEEEecCCCCcchHHHHHHHHHh----ccCCCcCCCeeEeeCCCcCCCCcccccccCC
Confidence 445565544445443 3567899999999999999765443321 1111 11233444454 444433333443
Q ss_pred E-EEeccCHHHHHHHHHHHHhcC-CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 135 T-FMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 135 ~-~~~~g~~~~~~~~~~ll~~lg-~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
. ++.|++++..+.++++++.+. ..++++++++.|+.+|+++|++.+.++++++|+..+|++.|+|.+++.++++.+
T Consensus 169 ~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~-- 246 (425)
T PRK15182 169 KKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK-- 246 (425)
T ss_pred CeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC--
Confidence 3 455667888899999999996 357788889999999999999999999999999999999999999999996533
Q ss_pred CccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022237 213 RCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 274 (300)
Q Consensus 213 ~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~ 274 (300)
|... .+.|| |...|..||...+...+++.|.+++++++++++-+
T Consensus 247 --~~~~----------------~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~ 291 (425)
T PRK15182 247 --WNFL----------------PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLND 291 (425)
T ss_pred --CCcc----------------cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 2111 12334 66678999999999999999999999999987633
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-27 Score=210.28 Aligned_cols=266 Identities=15% Similarity=0.153 Sum_probs=208.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------C------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------g------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||++||..|+++||+|++|+|++++.+.+... | +..+.++.++++.+|+||+|+|+. ++++++..
T Consensus 15 mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~-~~~~v~~~ 93 (328)
T PRK14618 15 WGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSK-ALRETLAG 93 (328)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECchH-HHHHHHHh
Confidence 89999999999999999999999988888764 3 334568888889999999999998 77888743
Q ss_pred CCCcccCCCCCCCeEEEEcCC-CCHHH--HHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSST-IDPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 143 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st-~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~ 143 (300)
. +++.++|++++ ..|.. .+.+.+.+.+. ... ++.++..|..........++++++++++++
T Consensus 94 l---------~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~---~~~----~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~ 157 (328)
T PRK14618 94 L---------PRALGYVSCAKGLAPDGGRLSELARVLEFL---TQA----RVAVLSGPNHAEEIARFLPAATVVASPEPG 157 (328)
T ss_pred c---------CcCCEEEEEeeccccCCCccchHHHHHHHh---cCC----CeEEEECccHHHHHHcCCCeEEEEEeCCHH
Confidence 1 23368888888 56654 55666665430 001 245677776655544445777888999999
Q ss_pred HHHHHHHHHHhcCCCeE--------eeCC---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022237 144 AYQAAKPLFLSMGKNTI--------YCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 206 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~--------~~g~---------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 206 (300)
.+++++++|+..+.+++ +.+. .|.+..+|+.+|...+.+.+++.|+..++++.|+++++++++
T Consensus 158 ~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~ 237 (328)
T PRK14618 158 LARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGL 237 (328)
T ss_pred HHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcC
Confidence 99999999999998776 3443 488899999999999999999999999999999999999999
Q ss_pred HHhc----CCCccccccCCCCCCcccCCCCCC---C-CCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 207 LNSS----SARCWSSDSYNPVPGVMEGVPASR---N-YGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 207 ~~~~----~~~s~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
.+.+ ++.|+.++++.+...+ ..+ + +.++|.+.++.||++.+.+++++.++++|+++.+++++
T Consensus 238 ~~~gDl~~t~~s~~~rn~~~g~~~-----~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~----- 307 (328)
T PRK14618 238 SGLGDLIATATSPHSRNRAAGEAI-----VRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA----- 307 (328)
T ss_pred cchhheeeEeccCCCccHHHHHHH-----hCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----
Confidence 8763 5567666654322222 234 3 56688999999999999999999999999999999988
Q ss_pred cCCCCCchHHHHHHHhc
Q 022237 279 NGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 279 ~g~g~~d~~~~~~~~~~ 295 (300)
+++.+..++++.+.+
T Consensus 308 --~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 308 --RGGWDPLAGLRSLMG 322 (328)
T ss_pred --hCCCCHHHHHHHHhc
Confidence 667787777776653
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=193.84 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=175.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh----------------CCCCC--CCCHHHHhhcCCEEEEecCCh-----
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----------------MGVPT--KETPFEVAEASDVVITMLPSS----- 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~----------------~g~~~--~~~~~e~~~~adiVii~vp~~----- 57 (300)
||.++|..|+. ||+|++||+++++++.+.+ .+.+. ..++.++++++|+||+|||++
T Consensus 11 vGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~ 89 (388)
T PRK15057 11 VGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKT 89 (388)
T ss_pred HHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCC
Confidence 89999988875 9999999999999998876 23333 234678889999999999988
Q ss_pred -----hhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcC
Q 022237 58 -----SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 132 (300)
Q Consensus 58 -----~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g 132 (300)
..+++++.++ .. .++|++||+.||++|.+++++.+.+.+ ......| .....|
T Consensus 90 ~~~dl~~v~~v~~~i---~~---~~~g~lVV~~STv~pgtt~~l~~~~~~------------~~v~~~P-----E~l~~G 146 (388)
T PRK15057 90 NYFNTSSVESVIKDV---VE---INPYAVMVIKSTVPVGFTAAMHKKYRT------------ENIIFSP-----EFLREG 146 (388)
T ss_pred CCcChHHHHHHHHHH---Hh---cCCCCEEEEeeecCCchHHHHHHHhhc------------CcEEECc-----ccccCC
Confidence 4566666433 22 245689999999999999999887653 1222234 344456
Q ss_pred ce--------EEEeccCHHHHHHHHHHHHh--cCCCeE-eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022237 133 TL--------TFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 201 (300)
Q Consensus 133 ~~--------~~~~~g~~~~~~~~~~ll~~--lg~~~~-~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 201 (300)
+. .+++|++++..+++.+++.. ++..+. ++++++.|+.+|+++|.+.+.++++++|+..+|++.|+|.+
T Consensus 147 ~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~ 226 (388)
T PRK15057 147 KALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTR 226 (388)
T ss_pred cccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 65 78899988888888888854 555444 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 022237 202 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 272 (300)
Q Consensus 202 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~ 272 (300)
++.++++....-+. ....| .+||...|..||...+...+ .++++++++++.++
T Consensus 227 eV~~a~~~d~ri~~--~~l~p--------------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~ 279 (388)
T PRK15057 227 QIIEGVCLDPRIGN--HYNNP--------------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDA 279 (388)
T ss_pred HHHHHhcCCCCCCC--ccCCC--------------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHH
Confidence 99999876541110 01112 23566778999999887655 56778999988875
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-25 Score=197.91 Aligned_cols=270 Identities=16% Similarity=0.162 Sum_probs=198.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+++|..|+++||+|++|+|++++++.+.+.+ .....++.++++++|+||+|||+. .+++++.+
T Consensus 12 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~~~~v~~~ 90 (325)
T PRK00094 12 WGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ-ALREVLKQ 90 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH-HHHHHHHH
Confidence 799999999999999999999999998887753 344567888889999999999986 88888865
Q ss_pred CCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 145 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~ 145 (300)
+...+ .++++||+++ |+.+.+.+++.+.+.+. .+......++.+|...........+..++.+++.+.+
T Consensus 91 l~~~~-----~~~~~vi~~~ngv~~~~~~~~~~~l~~~-----~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~ 160 (325)
T PRK00094 91 LKPLL-----PPDAPIVWATKGIEPGTGKLLSEVLEEE-----LPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELA 160 (325)
T ss_pred HHhhc-----CCCCEEEEEeecccCCCCCcHHHHHHHH-----cCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHH
Confidence 43332 3457888887 77777666666666542 1100123566667665444444455566777789999
Q ss_pred HHHHHHHHhcCCCeEeeCC-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 146 QAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 146 ~~~~~ll~~lg~~~~~~g~-----------------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
++++++|+..+.++.+..+ .|.+..+|+++|.+......++.|++.++++.|+|+++++++..
T Consensus 161 ~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~ 240 (325)
T PRK00094 161 ERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAG 240 (325)
T ss_pred HHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccH
Confidence 9999999998876655433 26778889999999999999999999999999999999988765
Q ss_pred hc----CCCccccccCCCCCCcccCCCCCCC-C-----CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 209 SS----SARCWSSDSYNPVPGVMEGVPASRN-Y-----GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 209 ~~----~~~s~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
.+ ...++.++.+.+...+ ..+. + ..+ .+.++.||++.+.++++++|+++|+.++++++|
T Consensus 241 ~~~~~~~~~s~~~~~~~~g~~~-----~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~----- 309 (325)
T PRK00094 241 LGDLVLTCTSPLSRNRRFGLAL-----GQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL----- 309 (325)
T ss_pred hhhhhhhccCCCCccHHHHHHH-----HCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----
Confidence 44 2223322222211111 1111 1 112 567789999999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHh
Q 022237 279 NGHDSKDFSCVFQHYY 294 (300)
Q Consensus 279 ~g~g~~d~~~~~~~~~ 294 (300)
+++.+...+++.+.
T Consensus 310 --~~~~~~~~~~~~~~ 323 (325)
T PRK00094 310 --YEGKDPREAVEDLM 323 (325)
T ss_pred --cCCCCHHHHHHHHh
Confidence 66777777776553
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=192.79 Aligned_cols=245 Identities=17% Similarity=0.202 Sum_probs=186.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++||+.|.++||+|++|||++. .++.++++++|+||+|+|++ ++++++.++... . ..+++
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~~~~v~~~l~~~--~--~~~~~ 76 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-GVRPVAEQVQAL--N--LPPET 76 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-HHHHHHHHHHHh--c--CCCCc
Confidence 799999999999999999999864 57788899999999999996 889888654321 1 23457
Q ss_pred EEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccC--CChHh-----hhcCceEEEeccCHHHHHHHHHHH
Q 022237 81 LLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLA-----AEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 81 ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~--g~~~~-----~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
+||++|+ ..|.+.+.+.+.+.. ++.++|+. .+|.. ....+.+++++++.+.+++++++|
T Consensus 77 ivi~~s~gi~~~~~~~~s~~~~~-------------~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll 143 (308)
T PRK14619 77 IIVTATKGLDPETTRTPSQIWQA-------------AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIF 143 (308)
T ss_pred EEEEeCCcccCCCCcCHHHHHHH-------------HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 8999886 777766666666543 22333432 22221 223467888899999999999999
Q ss_pred HhcCCCeEeeCC-c--c--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 022237 153 LSMGKNTIYCGG-A--G--------------NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 215 (300)
Q Consensus 153 ~~lg~~~~~~g~-~--g--------------~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~ 215 (300)
+..+.++++.++ . . .+..+|+..|...+..+.++.|++.++++.|+++++++++ .+.+.++
T Consensus 144 ~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~ 221 (308)
T PRK14619 144 SSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLL 221 (308)
T ss_pred CCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhh
Confidence 999888875554 2 2 2344458899999999999999999999999999999885 2444433
Q ss_pred ccccCCCCCCcccCCCCCCCCCCCcchhhH----------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 216 SSDSYNPVPGVMEGVPASRNYGGGFASKLM----------------AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
. .. + .+..|+|.++|.+... .||++.+.+++++.|+++|+.+.++++|
T Consensus 222 ~-t~----~-----~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~------ 285 (308)
T PRK14619 222 A-TC----T-----SPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL------ 285 (308)
T ss_pred e-ee----c-----CCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH------
Confidence 2 11 1 1346778777877776 9999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHhc
Q 022237 280 GHDSKDFSCVFQHYYG 295 (300)
Q Consensus 280 g~g~~d~~~~~~~~~~ 295 (300)
+++.+...+++.+.+
T Consensus 286 -~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 286 -QGEITPQQALEELME 300 (308)
T ss_pred -cCCCCHHHHHHHHHc
Confidence 667777777777654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=184.67 Aligned_cols=255 Identities=12% Similarity=0.127 Sum_probs=195.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCCC-------------CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~adiVii~vp~ 56 (300)
||++||..|+++||+|++||++++.++.. .+.|. ..+.++.++++++|+|++|+|+
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe 92 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPE 92 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcC
Confidence 79999999999999999999999877653 33442 4567888899999999999999
Q ss_pred hhhhhhhhcC-CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE
Q 022237 57 SSHVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 135 (300)
Q Consensus 57 ~~~~~~v~~~-~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~ 135 (300)
+.+++..+.+ +.... ++ .+++. |++++....++++.+.. . +..+.++|+.+.... .+.
T Consensus 93 ~~~~k~~~~~~l~~~~-----~~-~~ii~-ssts~~~~~~la~~~~~------~----~~~~~~hp~~p~~~~----~lv 151 (308)
T PRK06129 93 NLELKRALFAELDALA-----PP-HAILA-SSTSALLASAFTEHLAG------R----ERCLVAHPINPPYLI----PVV 151 (308)
T ss_pred CHHHHHHHHHHHHHhC-----CC-cceEE-EeCCCCCHHHHHHhcCC------c----ccEEEEecCCCcccC----ceE
Confidence 8666555432 22222 22 45555 55555666777776643 1 257888888653211 245
Q ss_pred EEec---cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 136 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 136 ~~~~---g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
.+++ ++++.+++++++++.+|++++++++.+.+. +++|++ ..+++|++.++++.|+|++++.++++.+.+
T Consensus 152 eiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl~----~a~~~EA~~l~~~g~~~~~~id~~~~~~~g 224 (308)
T PRK06129 152 EVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRLQ----GALLREAFRLVADGVASVDDIDAVIRDGLG 224 (308)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence 5675 789999999999999999999998756665 455543 388899999999999999999999999988
Q ss_pred CccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 022237 213 RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 292 (300)
Q Consensus 213 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~ 292 (300)
.+|.+ ..|+ +..+.|.++|......||..++.+++++.+.+.|++....+.+....+.-++..++..+.+.
T Consensus 225 ~~~~~--~gp~-------~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 225 LRWSF--MGPF-------ETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred CCccC--cCHH-------HHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 87764 2332 22446777888999999999999999999999999998887777777778888888887764
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=170.64 Aligned_cols=242 Identities=16% Similarity=0.207 Sum_probs=189.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHhhcCCEEEEecCChh--
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSS-- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~e~~~~adiVii~vp~~~-- 58 (300)
.|...+.+|++.||+|+++|.++++++.+++. | ...+++.+++++++|++|||||+|.
T Consensus 11 VGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 11 VGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCC
Confidence 37888999999999999999999999887653 2 4567889999999999999999884
Q ss_pred -------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc
Q 022237 59 -------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 131 (300)
Q Consensus 59 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~ 131 (300)
.++.+...+...+ .+.++||.-||+.|.+..++.+.+.+.. .+ ..+..+..|.|-.+..+..
T Consensus 91 dg~aDl~~V~ava~~i~~~~-----~~~~vvV~KSTVPvGt~~~v~~~i~~~~----~~--~~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 91 DGSADLSYVEAVAKDIGEIL-----DGKAVVVIKSTVPVGTTEEVRAKIREEN----SG--KDFEVASNPEFLREGSAVY 159 (414)
T ss_pred CCCccHHHHHHHHHHHHhhc-----CCCeEEEEcCCCCCCchHHHHHHHHhhc----cc--CCceEecChHHhcCcchhh
Confidence 2444554433333 2337999999999999999998876531 11 1467888898877666554
Q ss_pred Cce---EEEeccCH-HHHHHHHHHHHhc---CCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022237 132 GTL---TFMVGGSE-DAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 204 (300)
Q Consensus 132 g~~---~~~~~g~~-~~~~~~~~ll~~l---g~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 204 (300)
.++ .+++|.+. ++.+.+++++..+ ...+++++ ...|+++|+..|++.+..+..++|...+|++.|+|..++.
T Consensus 160 D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~-~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~ 238 (414)
T COG1004 160 DFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTD-LREAELIKYAANAFLATKISFINEIANICEKVGADVKQVA 238 (414)
T ss_pred hccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEec-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 433 46778744 4678888888776 44445554 5999999999999999999999999999999999999999
Q ss_pred HHHHhcC--CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 022237 205 KILNSSS--ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 272 (300)
Q Consensus 205 ~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~ 272 (300)
+.++... |..| .++ ..||...|+.||++.++..++++|.+.++++++.+.
T Consensus 239 ~gIGlD~RIG~~f----l~a--------------G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~v 290 (414)
T COG1004 239 EGIGLDPRIGNHF----LNA--------------GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEV 290 (414)
T ss_pred HHcCCCchhhHhh----CCC--------------CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHH
Confidence 9987654 1111 111 246777899999999999999999999999998764
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=176.04 Aligned_cols=193 Identities=18% Similarity=0.207 Sum_probs=152.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-----~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|++||.+|+++||+|++|||+++ +.+.+.+.|+..+.++.++++++|+||+|+|++..+++++.++ .+. .
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L---~~~--L 106 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNI---LPH--L 106 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHH---Hhh--C
Confidence 78999999999999999999987 4556777788888899999999999999999986588888643 332 3
Q ss_pred CCCeEEEEcCCCCHHHH-HHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCceEEEecc--------CHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG--------SEDAYQ 146 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~~~~~~~g--------~~~~~~ 146 (300)
+++++|||+||++|... +.+.+.+... ....++++.+ +++.+++ .+.+.+++++ +++.++
T Consensus 107 ~~g~IVId~ST~~~~~~s~~l~~~l~~~------~~~~gi~~~~p~~v~Gae----~g~l~Vm~gg~t~~~~~~~~e~~e 176 (342)
T PRK12557 107 PENAVICNTCTVSPVVLYYSLEGELRTK------RKDVGISSMHPAAVPGTP----QHGHYVIAGKTTNGTELATEEQIE 176 (342)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhccc------ccccCeeecCCccccccc----cchheEEeCCCcccccCCCHHHHH
Confidence 45689999999999987 6776666421 0011244443 3334443 3444666654 888999
Q ss_pred HHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 147 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 147 ~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
+++++|+.+|.+++++++ |.+..+|+++|++.+.++++..|++.++++.|.++.++.+-+...
T Consensus 177 ~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~ 239 (342)
T PRK12557 177 KCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILM 239 (342)
T ss_pred HHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999998887775 999999999999999999999999999999999998887755433
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-22 Score=154.04 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 245 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (300)
|.|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+. +. .+..++|.++|+++..
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~--~~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRA--PR----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHH--HH----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhh--hh----hhhcccCCccchhHhh
Confidence 78999999999999999999999999999999999999999999999888866542 21 1457899999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 022237 246 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 246 ~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
.||++++.+++++.|+|+|+.+.+.++|+.+.++|+|++|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999986
|
... |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.6e-21 Score=166.57 Aligned_cols=252 Identities=21% Similarity=0.288 Sum_probs=189.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-----CCCCCCHHHHh---hcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g-----~~~~~~~~e~~---~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||+.||.++.++||.|.+|||++++.+++.+.. +..+.+.+|.+ +...-|+++|.....+..++.++.++++
T Consensus 14 MG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le 93 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLE 93 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcC
Confidence 899999999999999999999999999998762 45566787765 5789999999776566777776555653
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
+|.|+||..++....+.+..+.+.+. |++|+..-|+|++..+..|. .+|.||++++++.++++|
T Consensus 94 -----~gDIiIDGGNs~y~DT~RR~~eL~~~----------Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil 157 (473)
T COG0362 94 -----KGDIIIDGGNSHYKDTIRRNKELSEK----------GILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPIL 157 (473)
T ss_pred -----CCCEEEeCCCcCCchHHHHHHHHHhc----------CCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHH
Confidence 45899999988766666655656542 38999999999999999998 899999999999999999
Q ss_pred HhcC------CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HHhcCCCccccccCCC
Q 022237 153 LSMG------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNSSSARCWSSDSYNP 222 (300)
Q Consensus 153 ~~lg------~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~---~~~~~~~s~~~~~~~~ 222 (300)
..+. ..+.++|+-|+++.+||++|-+.++-|++++|++.+.+. +|++.+++.++ ++.+-..|++.+....
T Consensus 158 ~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~ 237 (473)
T COG0362 158 TKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITAD 237 (473)
T ss_pred HHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 9985 345799999999999999999999999999999999998 79998876655 4455556665443222
Q ss_pred CCCcccCCCCCCCCCCCcc-hhhHHHH------HHHHHHHHHHcCCCchHHHHH-HHHHHH
Q 022237 223 VPGVMEGVPASRNYGGGFA-SKLMAKD------LNLALASAKEVGVDCPLTSQA-QDIYAK 275 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~-~~~~~kd------~~~~~~~a~~~g~~~~~~~~~-~~~~~~ 275 (300)
.... .|-+.+-. ++..... =+.....|.++|+|++++... ...+.+
T Consensus 238 IL~~-------kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lS 291 (473)
T COG0362 238 ILRK-------KDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLS 291 (473)
T ss_pred HHhh-------cCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 1111 11111111 1111110 145566788899999887743 444433
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=162.76 Aligned_cols=274 Identities=15% Similarity=0.189 Sum_probs=197.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
+|++||..|+++||+|.+|.|+++.++++... ++..++++.++++++|+|+++||.. .+++++.+
T Consensus 12 wGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~-~~r~v~~~ 90 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQ-ALREVLRQ 90 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECChH-HHHHHHHH
Confidence 59999999999999999999999999988774 2456788999999999999999997 99999987
Q ss_pred CCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 145 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~ 145 (300)
++..+. ++++++.+| +..+.+.+.+.+.+.+. .+. . .+.++++|-+..+......+.+++.+-|++..
T Consensus 91 l~~~l~-----~~~~iv~~sKGie~~t~~l~seii~e~----l~~-~-~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a 159 (329)
T COG0240 91 LKPLLL-----KDAIIVSATKGLEPETGRLLSEIIEEE----LPD-N-PIAVLSGPSFAKEVAQGLPTAVVVASNDQEAA 159 (329)
T ss_pred Hhhhcc-----CCCeEEEEeccccCCCcchHHHHHHHH----cCC-C-eEEEEECccHHHHHhcCCCcEEEEecCCHHHH
Confidence 654442 335555555 67777777888877652 111 1 16778888887777766667666677788888
Q ss_pred HHHHHHHHhcCCCeEeeCC---c--------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 146 QAAKPLFLSMGKNTIYCGG---A--------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 146 ~~~~~ll~~lg~~~~~~g~---~--------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
++++.+|+.-..+++...+ . |....+.+..|+-.+....+++|+.+++...|-++++++.+-+
T Consensus 160 ~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG 239 (329)
T COG0240 160 EKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSG 239 (329)
T ss_pred HHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccccc
Confidence 9999999864433332222 1 4445666889999999999999999999999999998877655
Q ss_pred hcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q 022237 209 SSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 284 (300)
Q Consensus 209 ~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~ 284 (300)
.+. +.|..+++++.+..+.++............+.+..+..+.+.++++++++++|+++++++++. +..
T Consensus 240 lGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~-------~~~ 312 (329)
T COG0240 240 LGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY-------EGL 312 (329)
T ss_pred ccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------CCC
Confidence 442 334444444332212121000000111233556788889999999999999999999999884 445
Q ss_pred chHHHHHHH
Q 022237 285 DFSCVFQHY 293 (300)
Q Consensus 285 d~~~~~~~~ 293 (300)
+...+++.+
T Consensus 313 ~~~~~~~~L 321 (329)
T COG0240 313 DPKEAIEEL 321 (329)
T ss_pred CHHHHHHHH
Confidence 555555554
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=165.55 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=183.4
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhCC-------------------CCCCCCHHHHhhcCCEEEEecCChh-
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASDVVITMLPSSS- 58 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~g-------------------~~~~~~~~e~~~~adiVii~vp~~~- 58 (300)
||.++|..|+++| |+|+++|+++++++.+++.+ ...+++..++++++|++|+|||+|.
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~ 91 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTK 91 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCC
Confidence 6899999999885 78999999999998876531 2344566778999999999998774
Q ss_pred -------------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCC
Q 022237 59 -------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 125 (300)
Q Consensus 59 -------------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~ 125 (300)
.+++++..+... .+++++||..||+.|.+++++.+.+.+. ..| ..+++..+|.+-.
T Consensus 92 ~~g~~~~~~~Dls~v~~a~~~i~~~-----l~~~~lVv~~STvp~Gtt~~~~~~l~~~----~~g--~~f~v~~~PErl~ 160 (473)
T PLN02353 92 TRGLGAGKAADLTYWESAARMIADV-----SKSDKIVVEKSTVPVKTAEAIEKILTHN----SKG--INFQILSNPEFLA 160 (473)
T ss_pred CCCCcCCCCCcHHHHHHHHHHHHhh-----CCCCcEEEEeCCCCCChHHHHHHHHHhh----CCC--CCeEEEECCCccC
Confidence 234444333222 3456899999999999999998887652 112 2367788898766
Q ss_pred hHhhhcCc---eEEEeccC-----HHHHHHHHHHHHhcCC-CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022237 126 VLAAEAGT---LTFMVGGS-----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 196 (300)
Q Consensus 126 ~~~~~~g~---~~~~~~g~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 196 (300)
+..+.... -.+++|+. +++.+.++++++.+.. .++.+.++..|+..|+..|.+.+.+++.++|...+|++.
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55544322 24666773 3467889999998853 455667789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--chHHHHHHHH
Q 022237 197 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--CPLTSQAQDI 272 (300)
Q Consensus 197 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~~~~~~~~~~ 272 (300)
|+|..++.++++...--++ ....| .+||...|..||...+...+++.|.+ +++.+++.++
T Consensus 241 giD~~eV~~~~~~d~rig~--~~l~P--------------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~i 302 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGP--KFLNA--------------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKM 302 (473)
T ss_pred CCCHHHHHHHhCCCCcCCC--CCCCC--------------CCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 9999999998876531111 01112 23555678999999999999999998 7787776653
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=154.08 Aligned_cols=203 Identities=17% Similarity=0.202 Sum_probs=150.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHhhcCCEEEEecCChhh-
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSSH- 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~e~~~~adiVii~vp~~~~- 59 (300)
+|.++|..++++|++|+++|.|+.+++.+++- | .+.++++.++ +.||+++||||+|-.
T Consensus 20 VGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~iI~VPTPl~~ 98 (436)
T COG0677 20 VGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVFIICVPTPLKK 98 (436)
T ss_pred ccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEEEEEecCCcCC
Confidence 69999999999999999999999998877652 2 4455555554 599999999998831
Q ss_pred -----hhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCC--CCceEEEeccCCChHhhh--
Q 022237 60 -----VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW--ENPVMLDAPVSGGVLAAE-- 130 (300)
Q Consensus 60 -----~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pv~g~~~~~~-- 130 (300)
+.-|....+.+.+. +.+|++||--||++|.+++++...+.+. ..|.. ..+..-.+|.---|....
T Consensus 99 ~~~pDls~v~~aa~sIa~~--L~kG~LVIlEST~~PGTTe~v~~plle~----~sgL~~~~Df~laysPERv~PG~~~~e 172 (436)
T COG0677 99 YREPDLSYVESAARSIAPV--LKKGDLVILESTTPPGTTEEVVKPLLEE----RSGLKFGEDFYLAYSPERVLPGNVLKE 172 (436)
T ss_pred CCCCChHHHHHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHHHHHhh----cCCCcccceeeEeeCccccCCCchhhh
Confidence 11222222222222 3567899999999999999999988762 12221 234455566433222211
Q ss_pred -cCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 131 -AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 131 -~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
....-++-|-++...+.++.+++.+-..++.+.+...|++.|+..|.+...++++++|...+|+++|+|..++.++.+.
T Consensus 173 l~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAnt 252 (436)
T COG0677 173 LVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAANT 252 (436)
T ss_pred hhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhcc
Confidence 1222344444788999999999999777788888899999999999999999999999999999999999999998875
Q ss_pred c
Q 022237 210 S 210 (300)
Q Consensus 210 ~ 210 (300)
-
T Consensus 253 ~ 253 (436)
T COG0677 253 K 253 (436)
T ss_pred C
Confidence 4
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=164.18 Aligned_cols=252 Identities=15% Similarity=0.143 Sum_probs=170.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------------------CC-CCCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
||++||.+|+++||+|++||+++++.+.+.+ .| +..++++.+++++||+||.|+|++.++
T Consensus 15 MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~v 94 (495)
T PRK07531 15 IGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDL 94 (495)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHHH
Confidence 8999999999999999999999998766432 12 456778999999999999999999877
Q ss_pred hhhhcC-CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEec
Q 022237 61 LDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 139 (300)
Q Consensus 61 ~~v~~~-~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~ 139 (300)
+..+.+ +... .++ ..||++||+.+... .+.+.+.+ . +..++++|.... ..+.++.+++
T Consensus 95 k~~l~~~l~~~-----~~~-~~iI~SsTsgi~~s-~l~~~~~~------~----~r~~~~hP~nP~----~~~~Lvevv~ 153 (495)
T PRK07531 95 KRRVLAEIDAA-----ARP-DALIGSSTSGFLPS-DLQEGMTH------P----ERLFVAHPYNPV----YLLPLVELVG 153 (495)
T ss_pred HHHHHHHHHhh-----CCC-CcEEEEcCCCCCHH-HHHhhcCC------c----ceEEEEecCCCc----ccCceEEEcC
Confidence 775432 2222 233 35778888776644 55555432 1 246778875522 1235677888
Q ss_pred cC---HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 022237 140 GS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG-VSEALTLGQSLGISASTLTKILNSSSARCW 215 (300)
Q Consensus 140 g~---~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~-~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~ 215 (300)
|+ ++.+++++++++.+|+++++++ |.+.|++...++.. +.|++.++++.|++++++.++++.+.+.+|
T Consensus 154 g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 154 GGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 75 7899999999999999999987 46667777666777 499999999999999999999999987776
Q ss_pred ccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 022237 216 SSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291 (300)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~-~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~ 291 (300)
.. ..|+. .-+..++ -.+..+.+-+.-.+ +..++.+-..++.....+.+....+.-.+..++..+.+
T Consensus 226 ~~--~Gpf~--------~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (495)
T PRK07531 226 AQ--MGLFE--------TYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQSGGLSIRELER 293 (495)
T ss_pred cc--cchHH--------HHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 52 12211 0111110 01112222222222 22355555556666666666666665566565554443
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=148.86 Aligned_cols=241 Identities=16% Similarity=0.186 Sum_probs=167.1
Q ss_pred ChHHHHHHHHhCCC----eEEEE-cCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVH-DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++|+++|.++|| +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|+|+ .++++++.++...+
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~-~~~~~vl~~l~~~~---- 85 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKP-QVVKDVLTELRPLL---- 85 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECc-HHHHHHHHHHHhhc----
Confidence 89999999999998 89999 9999999999888988888999999999999999975 48999986543222
Q ss_pred CCCCeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcCceEEEe---ccCHHHHHHHHH
Q 022237 76 SVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMV---GGSEDAYQAAKP 150 (300)
Q Consensus 76 ~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g~~~~~~---~g~~~~~~~~~~ 150 (300)
+++++||.+ +++.....+ +.... .+++ ..|..... ...+. +.++ +++++.++.+++
T Consensus 86 -~~~~~iIs~~~g~~~~~l~---~~~~~------------~~vvr~mP~~~~~--~~~~~-~~l~~~~~~~~~~~~~v~~ 146 (266)
T PLN02688 86 -SKDKLLVSVAAGITLADLQ---EWAGG------------RRVVRVMPNTPCL--VGEAA-SVMSLGPAATADDRDLVAT 146 (266)
T ss_pred -CCCCEEEEecCCCcHHHHH---HHcCC------------CCEEEECCCcHHH--HhCce-EEEEeCCCCCHHHHHHHHH
Confidence 344676744 555544333 33221 1344 34544332 22233 3333 237889999999
Q ss_pred HHHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccc-cCCCCCCcc
Q 022237 151 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNPVPGVM 227 (300)
Q Consensus 151 ll~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~ 227 (300)
+|+.+|. ++++++ .......--....+.+.++..+.|+ +++.|+|++++.+++..+..+++.+- .....|.-+
T Consensus 147 l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l 222 (266)
T PLN02688 147 LFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQL 222 (266)
T ss_pred HHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999998 888865 4444444444566778888999998 88999999999999988765544321 111111111
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 228 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
.++--.|+ .-....++.+++.|++-.+.+++...++++.+.+
T Consensus 223 ----~~~v~spg-------G~t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 223 ----KDMVTSPG-------GTTIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred ----HHhCCCCc-------hHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 01111222 1257778888889999999999999999998865
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-18 Score=145.35 Aligned_cols=252 Identities=19% Similarity=0.261 Sum_probs=185.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---C--CCCCCCHHHHh---hcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~---g--~~~~~~~~e~~---~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..|+.+.+.+||.|.+|||+..+++++.+. | +..+.|++|.+ +...+|++.|.....+...++++.+++.
T Consensus 17 MGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Le 96 (487)
T KOG2653|consen 17 MGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLE 96 (487)
T ss_pred hhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcC
Confidence 89999999999999999999999999998765 2 34567888875 5789999999887777777776655553
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
+|.+|||-.+.....+.+..+.+.. . |+-|+.+.++|++..+..|. .+|.||+++++..++++|
T Consensus 97 -----kgDiIIDGGNs~y~dT~RR~~el~k------~----GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~if 160 (487)
T KOG2653|consen 97 -----KGDIIIDGGNSEYQDTERRCRELAK------K----GILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIF 160 (487)
T ss_pred -----CCCEEEeCCcccCcchHHHHHHHHh------c----CcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHH
Confidence 4589999988765554444444432 2 37899999999999999998 889999999999999999
Q ss_pred HhcC-------CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCccccccCC
Q 022237 153 LSMG-------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYN 221 (300)
Q Consensus 153 ~~lg-------~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~ 221 (300)
+.+. ..+.++|+-|+++.+||++|-+.++-|++++|++.+.++ .|++.+++.+++. .+-.-||+.+...
T Consensus 161 q~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~ 240 (487)
T KOG2653|consen 161 QKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITA 240 (487)
T ss_pred HHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhH
Confidence 8874 245789999999999999999999999999999999999 7899888766654 4444455544322
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHH-------HHHHHHHHHHcCCCchHHHHH-HHHHHHH
Q 022237 222 PVPGVMEGVPASRNYGGGFASKLMAKD-------LNLALASAKEVGVDCPLTSQA-QDIYAKL 276 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~kd-------~~~~~~~a~~~g~~~~~~~~~-~~~~~~a 276 (300)
....+.+ + .|-.+-.-.-| =+.....+-++|+|.|++..+ ...+.++
T Consensus 241 dIlk~~d------~--~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~ 295 (487)
T KOG2653|consen 241 DILKFKD------E--DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSA 295 (487)
T ss_pred HHhheec------c--CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 2221111 0 01111111111 144556677899999987754 3444333
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=149.97 Aligned_cols=251 Identities=18% Similarity=0.174 Sum_probs=167.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-----------------CCCCHHHHhhcCCEEEEecCChhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------------TKETPFEVAEASDVVITMLPSSSHVLDV 63 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----------------~~~~~~e~~~~adiVii~vp~~~~~~~v 63 (300)
||+.+|..|+++||+|++|||++. .+.+.+.|.. ...++ +.++.+|+||+|||.+ .+.++
T Consensus 13 mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~vk~~-~~~~~ 89 (341)
T PRK08229 13 IGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTVKSA-ATADA 89 (341)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEecCc-chHHH
Confidence 799999999999999999999764 4566655532 12344 5678999999999987 66777
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe--c---cCCChHh---hhcCceE
Q 022237 64 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA--P---VSGGVLA---AEAGTLT 135 (300)
Q Consensus 64 ~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p---v~g~~~~---~~~g~~~ 135 (300)
+..+.+.+ .++++|+++++ .....+.+.+.+.+ .+++.+ | +..+|.. ...|++.
T Consensus 90 ~~~l~~~~-----~~~~iii~~~n-G~~~~~~l~~~~~~------------~~~~~g~~~~~~~~~~pg~~~~~~~g~l~ 151 (341)
T PRK08229 90 AAALAGHA-----RPGAVVVSFQN-GVRNADVLRAALPG------------ATVLAGMVPFNVISRGPGAFHQGTSGALA 151 (341)
T ss_pred HHHHHhhC-----CCCCEEEEeCC-CCCcHHHHHHhCCC------------CcEEEEEEEEEEEecCCceEEecCCCceE
Confidence 75443332 34577887654 33334455555432 123333 1 2222222 2234433
Q ss_pred EEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Q 022237 136 FMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS--------------------MLGVSEALTLGQS 195 (300)
Q Consensus 136 ~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~--------------------~~~~~Ea~~l~~~ 195 (300)
+ + +.+.++++.++|+..+.++.+.++++.....|++.|.+.... ..++.|++.++++
T Consensus 152 ~--~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a 228 (341)
T PRK08229 152 I--E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKA 228 (341)
T ss_pred e--c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 3 2 235568999999999999999999999999999999744333 3789999999999
Q ss_pred cCCCHHHHHHHHHhcC-----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH------------HHHHHHHH
Q 022237 196 LGISASTLTKILNSSS-----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN------------LALASAKE 258 (300)
Q Consensus 196 ~Gi~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~ 258 (300)
.|++++.+.++...+. ..++..... ...+.+.++.. ...+.+|+. .+++++++
T Consensus 229 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~ 298 (341)
T PRK08229 229 AGIRPARLTPLPPAWIPRLLRLPDPLFRRL-------AGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGR 298 (341)
T ss_pred cCCCccccCCCChhhhhhhhcCChHHHHHH-------HHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHH
Confidence 9999776543332221 011110100 00011222221 245899998 69999999
Q ss_pred cCCCchHHHHHHHHHHHHHHcCCCCCc
Q 022237 259 VGVDCPLTSQAQDIYAKLCENGHDSKD 285 (300)
Q Consensus 259 ~g~~~~~~~~~~~~~~~a~~~g~g~~d 285 (300)
+|+++|..+.++++++.+.+.|.....
T Consensus 299 ~gv~~P~~~~~~~~~~~~~~~~~~~~~ 325 (341)
T PRK08229 299 LGAPAPVNARLCALVHEAERAGARPAW 325 (341)
T ss_pred cCCCCcHHHHHHHHHHHHHhCCCcCCC
Confidence 999999999999999999998876654
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-17 Score=143.45 Aligned_cols=242 Identities=13% Similarity=0.140 Sum_probs=160.7
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCChh-hHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNCN-VMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~~-~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||++|+++|.++| ++|++|||+++ +++.+... |+..+.++.++++++|+||+|||++ .+.+++.++...+
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~vl~~l~~~~--- 89 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAEALIPFKEYI--- 89 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHHHHHHHHhhc---
Confidence 8999999999998 78999999864 66777654 7777788889999999999999877 7777775443222
Q ss_pred CCCCCeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccC---HHHHHHHHH
Q 022237 75 NSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAKP 150 (300)
Q Consensus 75 ~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~---~~~~~~~~~ 150 (300)
.++++||++ +++++++.+++. .. -..+..++.. .+.+..+.++++++++ ++.++.+++
T Consensus 90 --~~~~liIs~~aGi~~~~l~~~~---~~------------~~~v~r~mPn-~~~~~~~~~t~~~~~~~~~~~~~~~v~~ 151 (279)
T PRK07679 90 --HNNQLIISLLAGVSTHSIRNLL---QK------------DVPIIRAMPN-TSAAILKSATAISPSKHATAEHIQTAKA 151 (279)
T ss_pred --CCCCEEEEECCCCCHHHHHHHc---CC------------CCeEEEECCC-HHHHHhcccEEEeeCCCCCHHHHHHHHH
Confidence 345799996 888888666532 11 0112222222 2334445557777764 678899999
Q ss_pred HHHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc-cccccCCCCCCcc
Q 022237 151 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARC-WSSDSYNPVPGVM 227 (300)
Q Consensus 151 ll~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~ 227 (300)
+|+.+|..+ ++.+ +......--+.+.+.+.++..+.|+ +++.|+|.+++.+++.....++ .++......|..
T Consensus 152 l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~- 226 (279)
T PRK07679 152 LFETIGLVS-VVEEEDMHAVTALSGSGPAYIYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSI- 226 (279)
T ss_pred HHHhCCcEE-EeCHHHhhhHHHhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH-
Confidence 999999754 4432 2212222223344555555666665 8999999999999998854222 222211111222
Q ss_pred cCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 228 EGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 228 ~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
..+++ .|+++ ....+...++.|+.--+.+++..-++++.+.|
T Consensus 227 ----l~~~v~spgg~-------t~~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 227 ----LRKEITSPGGT-------TEAGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred ----HHHhcCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 23455 66665 45566667778888888888888888887765
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=151.42 Aligned_cols=180 Identities=18% Similarity=0.200 Sum_probs=137.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..|+++||+|++||++++.+++. .+.| +..+.++++ +++||+||.|||+
T Consensus 18 MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~aDlViEav~E 96 (507)
T PRK08268 18 MGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADCDLVVEAIVE 96 (507)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCCCEEEEcCcc
Confidence 89999999999999999999999988773 4445 355667765 5699999999999
Q ss_pred hhhhhhhhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCce
Q 022237 57 SSHVLDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~~ 134 (300)
+.+++..+.+. +... .+++.++ +|+||.++. ++++.+.. ..++.|.||++ +|+. .+
T Consensus 97 ~~~vK~~vf~~---l~~~-~~~~ailasntStl~i~---~la~~~~~------p~r~~G~hff~Pa~v~---------~L 154 (507)
T PRK08268 97 RLDVKQALFAQ---LEAI-VSPDCILATNTSSLSIT---AIAAALKH------PERVAGLHFFNPVPLM---------KL 154 (507)
T ss_pred cHHHHHHHHHH---HHhh-CCCCcEEEECCCCCCHH---HHHhhcCC------cccEEEEeecCCcccC---------ee
Confidence 99999886532 2211 2345666 599999997 45554432 23344589998 5665 35
Q ss_pred EEEecc---CHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 135 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 135 ~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
..+++| +++.++++.++++.+|+.++++++ +| .+.|-+. ...++|++.++++.|++++++.++++.+
T Consensus 155 vEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~al~~~ 225 (507)
T PRK08268 155 VEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAILREA 225 (507)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 777775 889999999999999999999986 56 2444443 2588999999999999999999999765
Q ss_pred CC
Q 022237 211 SA 212 (300)
Q Consensus 211 ~~ 212 (300)
.|
T Consensus 226 ~G 227 (507)
T PRK08268 226 AG 227 (507)
T ss_pred CC
Confidence 54
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=140.72 Aligned_cols=181 Identities=17% Similarity=0.182 Sum_probs=131.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------------------------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~------------------------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..|+++||+|++||+++++++.+.+. ++..+.++.+++++||+||+|+|+
T Consensus 12 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe 91 (288)
T PRK09260 12 MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPE 91 (288)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccC
Confidence 89999999999999999999999988775431 123456788899999999999999
Q ss_pred hhhhhhhhc-CCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLDVYN-GPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v~~-~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++..+. ++... .++++++ +++||.+|....+. +.. ..+..+.||+ +|+.++ .+
T Consensus 92 ~~~~k~~~~~~l~~~-----~~~~~il~~~tSt~~~~~l~~~---~~~------~~r~~g~h~~-~Pv~~~-------~L 149 (288)
T PRK09260 92 KLELKKAVFETADAH-----APAECYIATNTSTMSPTEIASF---TKR------PERVIAMHFF-NPVHKM-------KL 149 (288)
T ss_pred CHHHHHHHHHHHHhh-----CCCCcEEEEcCCCCCHHHHHhh---cCC------cccEEEEecC-CCcccC-------ce
Confidence 977765543 22222 2344555 79999999764433 321 1122346788 677654 46
Q ss_pred EEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 135 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 135 ~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
..+++| +++.+++++++++.+|++++++++ ..+.....+. ...++|++.+.++.-.+++++..++..+.
T Consensus 150 ve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d-~~Gf~~nRl~-------~~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 221 (288)
T PRK09260 150 VELIRGLETSDETVQVAKEVAEQMGKETVVVNE-FPGFVTSRIS-------ALVGNEAFYMLQEGVATAEDIDKAIRLGL 221 (288)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC-cccHHHHHHH-------HHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 888887 899999999999999999999986 3333333222 25568999999885578999988876554
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=132.83 Aligned_cols=181 Identities=16% Similarity=0.238 Sum_probs=133.2
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC-CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||++|+++|.++|+ +|++|||++++.+.+.+.|.. .+.++.++. ++|+||+|||.+ .+.+++.++.. + +
T Consensus 11 mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~~~l~~-l-----~ 82 (275)
T PRK08507 11 MGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEILPKLLD-I-----K 82 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHHHHHhc-c-----C
Confidence 89999999999996 799999999999988887764 445677765 599999999987 66667765433 3 2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCC----hHhhh----cCceEEEec---cCHHHH
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGG----VLAAE----AGTLTFMVG---GSEDAY 145 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~----~~~~~----~g~~~~~~~---g~~~~~ 145 (300)
++++|+|++++++...+.+.+... ..|+.. |+.|+ |..+. .|...++++ ++++.+
T Consensus 83 ~~~iv~d~gs~k~~i~~~~~~~~~-------------~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~ 149 (275)
T PRK08507 83 ENTTIIDLGSTKAKIIESVPKHIR-------------KNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQ 149 (275)
T ss_pred CCCEEEECccchHHHHHHHHHhcC-------------CCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHH
Confidence 457999999988777666544311 245654 88764 43332 566677775 367788
Q ss_pred HHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022237 146 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 207 (300)
Q Consensus 146 ~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 207 (300)
+.++++|+.+|.+++++++.+....+++++++.. ....++.+++ . .+.+.+.+.+..
T Consensus 150 ~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~~~~~~~~~~~ 206 (275)
T PRK08507 150 ERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KEEDERNIFDLA 206 (275)
T ss_pred HHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hcCChHHHHhhc
Confidence 9999999999999999999999999999999976 3344444443 1 255666655544
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=146.27 Aligned_cols=179 Identities=18% Similarity=0.227 Sum_probs=133.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..|+++||+|++||++++.+++. .+.| +..++++++ +++||+||.|+|+
T Consensus 16 MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~aDlVIEav~E 94 (503)
T TIGR02279 16 MGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LADAGLVIEAIVE 94 (503)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCCCCEEEEcCcC
Confidence 89999999999999999999999988653 3334 234667755 5799999999999
Q ss_pred hhhhhhhhcC-CCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCc
Q 022237 57 SSHVLDVYNG-PNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGT 133 (300)
Q Consensus 57 ~~~~~~v~~~-~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~ 133 (300)
+.+++..+.+ +... .+++.++. ++||.++. ++++.+.+ ..+..|.||++ +|+..
T Consensus 95 ~~~vK~~vf~~l~~~-----~~~~~IlasnTStl~i~---~iA~~~~~------p~r~~G~HFf~Papv~~--------- 151 (503)
T TIGR02279 95 NLEVKKALFAQLEEL-----CPADTIIASNTSSLSIT---AIAAGLAR------PERVAGLHFFNPAPVMA--------- 151 (503)
T ss_pred cHHHHHHHHHHHHhh-----CCCCeEEEECCCCCCHH---HHHHhcCc------ccceEEEeccCccccCc---------
Confidence 9998887653 2222 23434433 56666654 44554432 23345689998 56652
Q ss_pred eEEEecc---CHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 134 LTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 134 ~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
+..+++| +++.++.+.++++.+|+.++++++ +|. ++|+++. ..+.|++.++++.+++++++.+++..
T Consensus 152 LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~----~~~~EA~~l~e~g~a~~~~ID~al~~ 222 (503)
T TIGR02279 152 LVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVAR----PYYAEALRALEEQVAAPAVLDAALRD 222 (503)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5778888 899999999999999999999986 563 3444443 68999999999999999999999986
Q ss_pred cCC
Q 022237 210 SSA 212 (300)
Q Consensus 210 ~~~ 212 (300)
+.+
T Consensus 223 ~~G 225 (503)
T TIGR02279 223 GAG 225 (503)
T ss_pred cCC
Confidence 543
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-15 Score=129.82 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=107.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhH-----HHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVM-----KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~-----~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|.+||++|+++||+|++|||+++++ +.+.+.|+..++++.++++++|+||+|+|++.++++|+. ++++. .
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~---GLaa~--L 106 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIAR---TIIEH--V 106 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHH---HHHhc--C
Confidence 7899999999999999999997765 358888999999999999999999999999988999973 34544 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhh---hcCceEEEec-cCHHHHHHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAA---EAGTLTFMVG-GSEDAYQAAKPL 151 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~---~~g~~~~~~~-g~~~~~~~~~~l 151 (300)
++|++|||+||++|....++-+..-+.+ +.. .++.... +.+.+.+... ..|....-.+ .+++..+++.++
T Consensus 107 ~~GaIVID~STIsP~t~~~~~e~~l~~~---r~d--~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el 181 (341)
T TIGR01724 107 PENAVICNTCTVSPVVLYYSLEKILRLK---RTD--VGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVEL 181 (341)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHhhcC---ccc--cCeeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHH
Confidence 5679999999999999888776622210 110 1111111 1233333220 0011000001 267888999999
Q ss_pred HHhcCCCeEeeCC
Q 022237 152 FLSMGKNTIYCGG 164 (300)
Q Consensus 152 l~~lg~~~~~~g~ 164 (300)
.+..++.++.+..
T Consensus 182 ~~~~~~~~~~~pa 194 (341)
T TIGR01724 182 AKSTGKKAYVVPA 194 (341)
T ss_pred HHHhCCCeeecch
Confidence 9999998887743
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.7e-16 Score=140.05 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=134.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|.++||+|++||+++. .++++++++||+||+|+|.. ...+++.++.. + ++++
T Consensus 110 mG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~~~l~~-l-----~~~~ 169 (374)
T PRK11199 110 LGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVIARLPP-L-----PEDC 169 (374)
T ss_pred hhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHHHHHhC-C-----CCCc
Confidence 899999999999999999998631 35678889999999999998 55667755433 2 4568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcCceEEEecc-CHHHHHHHHHHHHhcCCC
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKN 158 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~lg~~ 158 (300)
+|+|+|++++.....+.+... ..|+ .+|++|+......+...+++++ +++.++.+.++++.+|.+
T Consensus 170 iv~Dv~SvK~~~~~~~~~~~~-------------~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~ 236 (374)
T PRK11199 170 ILVDLTSVKNAPLQAMLAAHS-------------GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGAR 236 (374)
T ss_pred EEEECCCccHHHHHHHHHhCC-------------CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCE
Confidence 999999999988877765432 2466 7899997666666776777776 567889999999999999
Q ss_pred eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022237 159 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 205 (300)
Q Consensus 159 ~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~ 205 (300)
++++++.++...+++++.+ .++.+++++..+++ .+.+.+.+.+
T Consensus 237 v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 237 LHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 9999999999999999844 67788888888876 7888776544
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=138.87 Aligned_cols=187 Identities=15% Similarity=0.172 Sum_probs=134.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh-------HH-----------HHHhCC-------------CCCCCC--HHHHhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV-------MK-----------MFSDMG-------------VPTKET--PFEVAEAS 47 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~-------~~-----------~~~~~g-------------~~~~~~--~~e~~~~a 47 (300)
||..||..++.+|++|.+||++++. ++ .+.+.| +..+.+ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 9999999999999999999999852 11 112222 222322 66888999
Q ss_pred CEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChH
Q 022237 48 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 127 (300)
Q Consensus 48 diVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~ 127 (300)
|+||.|||.+.+++..+.+. +.+. .++++++ +||+++....++++.+.+ +.+..+.||+++|..-...
T Consensus 81 D~ViEav~E~~~~K~~~f~~--l~~~--~~~~~il--aSntS~~~~~~la~~~~~------p~r~~g~Hf~~Pp~~~~lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRW--LGRH--VDADAII--ASTTSTFLVTDLQRHVAH------PERFLNAHWLNPAYLMPLV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHHHH--HHhh--CCCCcEE--EEccccCCHHHHHhhcCC------cccEEEEecCCccccCceE
Confidence 99999999999998877642 2221 3444555 688888888888877643 3344558899988332211
Q ss_pred hhhcCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022237 128 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 207 (300)
Q Consensus 128 ~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 207 (300)
....+. +++++.++++.++++.+|+.++++++.+ +. .+.......++|++.++++.|++++++.+++
T Consensus 149 EVv~g~-----~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~ 215 (314)
T PRK08269 149 EVSPSD-----ATDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDKAI 215 (314)
T ss_pred EEeCCC-----CCCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 111111 5588999999999999999999998743 32 3344456888999999999999999999998
Q ss_pred HhcCC
Q 022237 208 NSSSA 212 (300)
Q Consensus 208 ~~~~~ 212 (300)
..+.+
T Consensus 216 ~~g~G 220 (314)
T PRK08269 216 RTGFG 220 (314)
T ss_pred HhCCC
Confidence 87754
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=136.02 Aligned_cols=185 Identities=19% Similarity=0.232 Sum_probs=126.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----C--------------CCCCCCHHHHhhcCCEEEEecCChhh-h
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----G--------------VPTKETPFEVAEASDVVITMLPSSSH-V 60 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g--------------~~~~~~~~e~~~~adiVii~vp~~~~-~ 60 (300)
||++||..|+++||+|++||+++++++.+.+. + +..++++.+++++||+||+|||.+.+ .
T Consensus 15 mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~ 94 (311)
T PRK06130 15 MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELK 94 (311)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHH
Confidence 89999999999999999999999888766541 2 23456778888999999999998754 3
Q ss_pred hhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc
Q 022237 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 140 (300)
Q Consensus 61 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g 140 (300)
..++.++...+ +++++ |.+++.... ..++++.+.. ...+.+.|+.++|..+ .+..++.+
T Consensus 95 ~~v~~~l~~~~-----~~~~i-i~s~tsg~~-~~~l~~~~~~------~~~~ig~h~~~p~~~~--------~l~~i~~g 153 (311)
T PRK06130 95 RDVFARLDGLC-----DPDTI-FATNTSGLP-ITAIAQAVTR------PERFVGTHFFTPADVI--------PLVEVVRG 153 (311)
T ss_pred HHHHHHHHHhC-----CCCcE-EEECCCCCC-HHHHHhhcCC------cccEEEEccCCCCccC--------ceEEEeCC
Confidence 44554433332 23334 433443333 3355555432 1111224444444222 13444444
Q ss_pred ---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 022237 141 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSAR 213 (300)
Q Consensus 141 ---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~ 213 (300)
+++.++.++++++.+|+.++++++...+. +++|++. ..++|++.++++.|++++++.++++.+.+.
T Consensus 154 ~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~ 222 (311)
T PRK06130 154 DKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLGI 222 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 68899999999999999999997522222 6677755 779999999999999999999999876553
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-16 Score=135.13 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=123.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||++||..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|.+ .+.+++.++...+ +++
T Consensus 11 mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~~~l~~~l-----~~~ 84 (279)
T PRK07417 11 IGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPSEQLIPAL-----PPE 84 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHHHHHHHhC-----CCC
Confidence 89999999999999999999999999988887753 2333345788999999999987 5566665433322 345
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCCh-Hhhh-------cCceEEEec---cCHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV-LAAE-------AGTLTFMVG---GSEDAYQA 147 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~-~~~~-------~g~~~~~~~---g~~~~~~~ 147 (300)
.+|+|++++++...+.+.+.. ..|+. +|++|++ .... .+...+++. ++++.++.
T Consensus 85 ~ii~d~~Svk~~~~~~~~~~~--------------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~ 150 (279)
T PRK07417 85 AIVTDVGSVKAPIVEAWEKLH--------------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAI 150 (279)
T ss_pred cEEEeCcchHHHHHHHHHHhh--------------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHH
Confidence 899999999988766554432 13565 6888765 2222 233344443 47788999
Q ss_pred HHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHH
Q 022237 148 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG 185 (300)
Q Consensus 148 ~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~ 185 (300)
++++++.+|.+++++++.+....+++++|+.......+
T Consensus 151 v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 151 VEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 99999999999999999999999999998887655443
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-16 Score=138.39 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=172.3
Q ss_pred ChHHHHHHHHhCC--------CeEEEEcC-----ChhhHHHHHhC--------C------CCCCCCHHHHhhcCCEEEEe
Q 022237 1 MGFRMASNLMKAG--------YKMAVHDV-----NCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITM 53 (300)
Q Consensus 1 mG~~la~~l~~~G--------~~V~~~dr-----~~~~~~~~~~~--------g------~~~~~~~~e~~~~adiVii~ 53 (300)
||++||..|+.+| |+|.+|.| +++-.+.+++. | +..+++++++++++|+||++
T Consensus 10 wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlA 89 (342)
T TIGR03376 10 WGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFV 89 (342)
T ss_pred HHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEE
Confidence 6999999999999 99999998 55555555442 1 23456888999999999999
Q ss_pred cCChhhhhhhhcCCCCcccCCCCCCCeEEEEc-CCCCHH--HHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh
Q 022237 54 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQ--TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 130 (300)
Q Consensus 54 vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~-st~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~ 130 (300)
||+. .+++++.++.+.+. +++++|.+ .+..+. +.+.+.+.+.+. .+ ..+.++.+|.+..+....
T Consensus 90 VPs~-~i~~vl~~l~~~l~-----~~~~iVs~tKGie~~~~~~~~~se~i~e~-----l~--~~~~~lsGP~~A~Eva~~ 156 (342)
T TIGR03376 90 IPHQ-FLEGICKQLKGHVK-----PNARAISCIKGLEVSKDGVKLLSDIIEEE-----LG--IPCGVLSGANLANEVAKE 156 (342)
T ss_pred CChH-HHHHHHHHHHhhcC-----CCCEEEEEeCCcccCCCcCccHHHHHHHH-----hC--CCeEEeeCcchHHHHHcC
Confidence 9997 89999887665552 23455544 456665 656666666552 11 135668888877766666
Q ss_pred cCceEEEeccC----HHHHHHHHHHHHhcCCCeEeeCC-c----------------cHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 131 AGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEA 189 (300)
Q Consensus 131 ~g~~~~~~~g~----~~~~~~~~~ll~~lg~~~~~~g~-~----------------g~a~~~k~~~n~~~~~~~~~~~Ea 189 (300)
..+.+++++.+ .+..+.++++|+.--.+++...+ . |....+.+..|+..+.+..++.|+
T Consensus 157 ~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em 236 (342)
T TIGR03376 157 KFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEM 236 (342)
T ss_pred CCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 66656666777 78888999998753333322222 2 333444467899999999999999
Q ss_pred HHHHHHcCCCHH--HHHHHHHhcC--CCccccccCCCCCCccc-CCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCC
Q 022237 190 LTLGQSLGISAS--TLTKILNSSS--ARCWSSDSYNPVPGVME-GVPASRNYGG--GFASKLMAKDLNLALASAKEVGVD 262 (300)
Q Consensus 190 ~~l~~~~Gi~~~--~~~~~~~~~~--~~s~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~ 262 (300)
..+++.+|-+++ +++.+-..+. ..+..++++..+..+.+ +...+.-... ...+.+....++.+.+++++.+++
T Consensus 237 ~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~ 316 (342)
T TIGR03376 237 IKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKD 316 (342)
T ss_pred HHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCC
Confidence 999999999877 7776655442 11222333332221211 1000000000 112334566678899999999999
Q ss_pred --chHHHHHHHHHH
Q 022237 263 --CPLTSQAQDIYA 274 (300)
Q Consensus 263 --~~~~~~~~~~~~ 274 (300)
+|+++++++++.
T Consensus 317 ~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 317 DEFPLFEAVYQILY 330 (342)
T ss_pred cCCCHHHHHHHHHh
Confidence 999999999873
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=137.01 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=174.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g---------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
||+++|..|+++| +|.+|.|+++..+.+++.+ +...+++.++++++|+||+|||.. .+++++.
T Consensus 18 ~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavps~-~~~~vl~ 95 (341)
T PRK12439 18 WGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVPSH-GFRGVLT 95 (341)
T ss_pred HHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeCHH-HHHHHHH
Confidence 7999999999999 6889999999998887642 123456778889999999999976 8888988
Q ss_pred CCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHH
Q 022237 66 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 144 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~ 144 (300)
++.+.+. +++++|.+ .+....+.+.+.+.+.+. ..+ .....+..|-+.........+..++.+.+++.
T Consensus 96 ~i~~~l~-----~~~~vIsl~kGi~~~t~~~~se~i~~~----l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~ 164 (341)
T PRK12439 96 ELAKELR-----PWVPVVSLVKGLEQGTNMRMSQIIEEV----LPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHL 164 (341)
T ss_pred HHHhhcC-----CCCEEEEEEeCCcCCCCCcHHHHHHHH----cCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHH
Confidence 7655542 22344433 355544344444444331 000 01334555644332222222223444557777
Q ss_pred HHHHHHHHHhcCCCeEeeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 207 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~-----------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 207 (300)
.+.++++|+.-+.++....++ |....+.+..|...+....++.|+..++++.|.++++++.+.
T Consensus 165 ~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~ 244 (341)
T PRK12439 165 ATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLA 244 (341)
T ss_pred HHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 889999998777655544443 222344456677777788999999999999999999998876
Q ss_pred HhcC----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 208 NSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 208 ~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
..+. +.|..++++..+..+.++...+.-....-.+-+....++.+.++++++++++|+++++++++ +++
T Consensus 245 G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il-------~~~ 317 (341)
T PRK12439 245 GMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVI-------NHG 317 (341)
T ss_pred hhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCC
Confidence 5552 22222333322211111110000000001234577778999999999999999999999998 567
Q ss_pred CchHHHHHHHh
Q 022237 284 KDFSCVFQHYY 294 (300)
Q Consensus 284 ~d~~~~~~~~~ 294 (300)
.+...+++.+.
T Consensus 318 ~~~~~~~~~l~ 328 (341)
T PRK12439 318 STVEQAYRGLI 328 (341)
T ss_pred CCHHHHHHHHh
Confidence 77777777653
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=134.75 Aligned_cols=273 Identities=11% Similarity=0.053 Sum_probs=182.4
Q ss_pred ChHHHHHHHHhCC-------CeEEEEcCChh-----hHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDM--------------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G-------~~V~~~dr~~~-----~~~~~~~~--------------g~~~~~~~~e~~~~adiVii~v 54 (300)
||++||..|+++| |+|.+|.|+++ .++.+++. ++..++++.++++++|+||++|
T Consensus 22 wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 22 WGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVI 101 (365)
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEc
Confidence 6999999999998 89999999986 36666543 2344678889999999999999
Q ss_pred CChhhhhhhhcCCCC--cccCCCCCCCeEEEEcC-CCCHHHH--HHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhh
Q 022237 55 PSSSHVLDVYNGPNG--LLQGGNSVRPQLLIDSS-TIDPQTS--RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 129 (300)
Q Consensus 55 p~~~~~~~v~~~~~~--~l~~~~~~~~~ivid~s-t~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~ 129 (300)
|.. .+++++.++.+ .+. +++++|.++ +..+.+- ..+.+.+.+. .+ ..+.++.+|.+..+...
T Consensus 102 Psq-~l~~vl~~l~~~~~l~-----~~~~iIS~aKGIe~~t~~~~~~sevi~e~-----l~--~~~~~LsGPs~A~Eva~ 168 (365)
T PTZ00345 102 PHQ-FLESVLSQIKENNNLK-----KHARAISLTKGIIVENGKPVLCSDVIEEE-----LG--IPCCALSGANVANDVAR 168 (365)
T ss_pred ChH-HHHHHHHHhccccccC-----CCCEEEEEeCCcccCCCCcccHHHHHHHH-----hC--CCeEEEECCCHHHHHHc
Confidence 887 89999988765 332 234555433 4444432 3455555442 11 13566788877776666
Q ss_pred hcCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCC-c----------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 130 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEALTL 192 (300)
Q Consensus 130 ~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~-~----------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l 192 (300)
...+..++++.|.+..+.++++|+.-..+++...+ . |....+++..|+..+.+..++.|+..+
T Consensus 169 ~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l 248 (365)
T PTZ00345 169 EEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLF 248 (365)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 66666677777888889999999854444333222 1 333445577899999999999999999
Q ss_pred HHHcC--CCHHHHHHHHHhcC--CCccccccCCCCCCcccCCCCCCCCCC---C---cchhhHHHHHHHHHHHHHHcCC-
Q 022237 193 GQSLG--ISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASRNYGG---G---FASKLMAKDLNLALASAKEVGV- 261 (300)
Q Consensus 193 ~~~~G--i~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~kd~~~~~~~a~~~g~- 261 (300)
++++| .++++++.+...+. ..+..++++..+..+.++.. ...+.. . ..+.+....++.+.++++++++
T Consensus 249 ~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~-~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~ 327 (365)
T PTZ00345 249 GKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNG-KKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK 327 (365)
T ss_pred HHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCC-CCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC
Confidence 99996 48999988766553 12222343332222211100 001110 0 1234567778999999999999
Q ss_pred -CchHHHHHHHHHHHHHHcCCCCCchHHHHHHHh
Q 022237 262 -DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 294 (300)
Q Consensus 262 -~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (300)
++|+++++++++ +++.+...+++.+.
T Consensus 328 ~~~Pi~~~vy~il-------~~~~~~~~~~~~l~ 354 (365)
T PTZ00345 328 KEFPLFTVTYKIA-------FEGADPSSLIDVLS 354 (365)
T ss_pred CCCCHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence 899999999998 45556666666553
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=128.51 Aligned_cols=255 Identities=12% Similarity=0.063 Sum_probs=158.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C---------CCCCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M---------GVPTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~---------g~~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
||..||..|+.+||+|++||++++..+.+.+ . .+..++++++++++||+|+.|+|.+.++
T Consensus 18 MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~v 97 (321)
T PRK07066 18 IGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAPEREAL 97 (321)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCHHH
Confidence 8999999999999999999999987654322 1 1245668889999999999999999888
Q ss_pred hhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc
Q 022237 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 140 (300)
Q Consensus 61 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g 140 (300)
+..+.+ .+.+. .+++ .|+.+||+ +....++++.+.+ +.++.+.||+.+|-.-.......+. ..
T Consensus 98 K~~lf~--~l~~~--~~~~-aIlaSnTS-~l~~s~la~~~~~------p~R~~g~HffnP~~~~pLVEVv~g~-----~T 160 (321)
T PRK07066 98 KLELHE--RISRA--AKPD-AIIASSTS-GLLPTDFYARATH------PERCVVGHPFNPVYLLPLVEVLGGE-----RT 160 (321)
T ss_pred HHHHHH--HHHHh--CCCC-eEEEECCC-ccCHHHHHHhcCC------cccEEEEecCCccccCceEEEeCCC-----CC
Confidence 877653 12221 2444 46665555 4455566665543 3444456676655433321111111 23
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccC
Q 022237 141 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSY 220 (300)
Q Consensus 141 ~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~ 220 (300)
+++.++.+.++++.+|+.++.+..--.+.....+.- ..+.|++.+.++...+++++..++..+.+..|. ..
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~-------a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~--~~ 231 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLE-------ALWREALHLVNEGVATTGEIDDAIRFGAGIRWS--FM 231 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHH-------HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCcc--Cc
Confidence 789999999999999999988853233444433333 566999999999889999999998888765553 12
Q ss_pred CCCCCcccCCCCCCCCCCCcc--hhhHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 022237 221 NPVPGVMEGVPASRNYGGGFA--SKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291 (300)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~--~~~~~kd~~~~~-~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~ 291 (300)
+|+. .-|..+ .. +..+.+.+.-.. +..++.+. .++.....+.+....+.-+|.+.+..+++
T Consensus 232 Gpf~--------~~Dl~G-ld~g~~~~~~~~g~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (321)
T PRK07066 232 GTFL--------TYTLAG-GDAGMRHFMQQFGPALELPWTKLVA-PELTDALIDRVVEGTAEQQGPRSIKALER 295 (321)
T ss_pred CHHH--------HhhhcC-hHHHHHHHHHHhhhhhhHHHHhcCC-CcccHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3321 011111 11 112222222222 22344554 34666666666666666666666666554
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=133.52 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=136.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+++|+.|.++|++|++|+|++++..++. +.|+....++.+++.++|+||+|+|.+ .+.+++.++.+.+ +++
T Consensus 12 mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl~~l~~~l-----~~~ 85 (437)
T PRK08655 12 LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVIKEVAPHV-----KEG 85 (437)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHHHHHHhhC-----CCC
Confidence 799999999999999999999998865544 347766678888999999999999987 6677776543332 456
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhcCceEEEecc---CHHHHHHHHHHHHhc
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSM 155 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~l 155 (300)
++|+|++++++...+.+.+.++. +..|+.+ |++|.......|...+++.+ +++.++.++++|+.+
T Consensus 86 ~iViDvsSvK~~~~~~l~~~~~~-----------~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~ 154 (437)
T PRK08655 86 SLLMDVTSVKERPVEAMEEYAPE-----------GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKE 154 (437)
T ss_pred CEEEEcccccHHHHHHHHHhcCC-----------CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 89999999999888888776532 2577765 99886555556776777754 577889999999999
Q ss_pred CCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022237 156 GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 206 (300)
Q Consensus 156 g~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 206 (300)
|.+++++++......+ .+.....++.+.+.+..+ ++.|++.++....
T Consensus 155 G~~v~~~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 155 GARVIVTSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKF 201 (437)
T ss_pred CCEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 9999888765444444 333333344444555444 6679988776544
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=127.45 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=166.9
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHHHHh-CCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++|+++|.++|+ +|++|||++++++.+.+ .|+..+.++.+++++||+||+|||+ ..+++|+.++.+.+
T Consensus 13 MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl~~l~~~~---- 87 (272)
T PRK12491 13 MGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVINQIKDQI---- 87 (272)
T ss_pred HHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHHHHHHHhh----
Confidence 89999999999885 69999999999988875 6877777888999999999999986 58999986544333
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFL 153 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~ 153 (300)
.++++||+ -....+...+.+.+... .+ +-.-+...+.....|...+..+. +++..+.++.+|+
T Consensus 88 -~~~~lvIS--i~AGi~i~~l~~~l~~~-----------~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 88 -KNDVIVVT--IAAGKSIKSTENEFDRK-----------LK-VIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred -cCCcEEEE--eCCCCcHHHHHHhcCCC-----------Cc-EEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 23467774 33333444555554310 11 22234444555556654444333 4667789999999
Q ss_pred hcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CccccccCCCCCCcccCC
Q 022237 154 SMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA-RCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~ 230 (300)
.+|.. +.+.+ +....++--+.+++++.++..+.++ +.+.|++.++..+++.+... ..-++.....-|.-
T Consensus 153 ~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~---- 224 (272)
T PRK12491 153 IFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGE---- 224 (272)
T ss_pred cCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----
Confidence 99975 56654 7888888889999999999999998 88899999999998887642 11111110000111
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 231 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
+.++--.|+.+ ....+...++.|+.--+.+++..-++++.+-
T Consensus 225 l~~~V~sPGGt-------T~~gl~~le~~~~~~~~~~av~aa~~r~~el 266 (272)
T PRK12491 225 LKDMVCSPGGT-------TIEAVATLEEKGLRTAIISAMKRCTQKSMEM 266 (272)
T ss_pred HHHhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 11222234332 3556667778888888888888888777664
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=126.79 Aligned_cols=180 Identities=17% Similarity=0.170 Sum_probs=127.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHH-----------HHhCC------------CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG------------VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~-----------~~~~g------------~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.+||..|+++|++|++||+++++++. +.+.| .....+..+++++||+||+|||++
T Consensus 15 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e~ 94 (295)
T PLN02545 15 MGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVES 94 (295)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCccC
Confidence 8999999999999999999999988753 33332 122333446789999999999988
Q ss_pred hhhhhhhcC-CCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE
Q 022237 58 SHVLDVYNG-PNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 135 (300)
Q Consensus 58 ~~~~~v~~~-~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~ 135 (300)
.+++..+.+ +... .+++++|+ ++|++++....+. +.. ...+.++||+++|..+. ++
T Consensus 95 ~~~k~~v~~~l~~~-----~~~~~il~s~tS~i~~~~l~~~---~~~------~~r~~g~h~~~pp~~~~--------lv 152 (295)
T PLN02545 95 EDLKKKLFSELDRI-----CKPSAILASNTSSISITRLASA---TQR------PQQVIGMHFMNPPPIMK--------LV 152 (295)
T ss_pred HHHHHHHHHHHHhh-----CCCCcEEEECCCCCCHHHHHhh---cCC------CcceEEEeccCCcccCc--------eE
Confidence 787766543 2222 23445665 8888877754433 321 12223478888887643 24
Q ss_pred EEec---cCHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 136 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 136 ~~~~---g~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
.++. ++++.++.++++++.+|+.++++++ .| .+++.++. ..++|++.+.++...+++++..++..+.
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 223 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAFYALYTGVASKEDIDTGMKLGT 223 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 4443 4789999999999999999998876 44 24445554 5689999999997788999987776554
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=125.29 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=124.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..|+++|++|++||++++.++.+.+ .| +..+++++ .+++||+||+|+|+
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe 93 (292)
T PRK07530 15 MGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLADCDLVIEAATE 93 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcCCCEEEEcCcC
Confidence 8999999999999999999999998776432 23 23445654 57899999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhcCc
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGT 133 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~g~ 133 (300)
+.+++.. +.++... .+++++++ ++||..+. .+++.+.. ..++.+.||+++ |+....
T Consensus 94 ~~~~k~~~~~~l~~~-----~~~~~ii~s~ts~~~~s---~la~~~~~------~~r~~g~h~~~p~~~~~~v------- 152 (292)
T PRK07530 94 DETVKRKIFAQLCPV-----LKPEAILATNTSSISIT---RLASATDR------PERFIGIHFMNPVPVMKLV------- 152 (292)
T ss_pred CHHHHHHHHHHHHhh-----CCCCcEEEEcCCCCCHH---HHHhhcCC------cccEEEeeccCCcccCceE-------
Confidence 8665544 4332222 23446666 77777654 45554431 122334677773 333221
Q ss_pred eEEE--eccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 134 LTFM--VGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 134 ~~~~--~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
-++ .+++++.++.+.++++.+|+.++++++.+ -+++++++. ..++|++.+.++.-.+++++..++..+.
T Consensus 153 -ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~----~~~~ea~~~~~~g~~~~~~iD~~~~~g~ 223 (292)
T PRK07530 153 -ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILL----PMINEAIYTLYEGVGSVEAIDTAMKLGA 223 (292)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 122 25689999999999999999999987644 455566665 6679999999884458899888876553
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=124.45 Aligned_cols=269 Identities=14% Similarity=0.134 Sum_probs=152.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--C------------CCCCCHHHHh-hcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--V------------PTKETPFEVA-EASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--~------------~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~ 65 (300)
||++++..|+++||+|.+|+|+++.++.+.+.+ . ....++.+++ ..+|+||++||+. .+++++.
T Consensus 11 ~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks~-~~~~~l~ 89 (326)
T PRK14620 11 FGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPTQ-QLRTICQ 89 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCHH-HHHHHHH
Confidence 799999999999999999999999888887631 1 1234556666 5899999999887 8888887
Q ss_pred CCCC-cccCCCCCCCeEEEEcCCCCHHHH----HHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc
Q 022237 66 GPNG-LLQGGNSVRPQLLIDSSTIDPQTS----RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 140 (300)
Q Consensus 66 ~~~~-~l~~~~~~~~~ivid~st~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g 140 (300)
++.+ .+. +...+|+.+.+....+. +.+.+.+.. +.+..+.+|-+.........+...+.+.
T Consensus 90 ~l~~~~l~----~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~----------~~~~~~~Gp~~a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 90 QLQDCHLK----KNTPILICSKGIEKSSLKFPSEIVNEILPN----------NPIAILSGPSFAKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred HHHHhcCC----CCCEEEEEEcCeeCCCCccHHHHHHHHcCC----------CceEeecCCcHHHHHHcCCCcEEEEecC
Confidence 7654 432 22245666666544222 222222221 1133344443222111111222334444
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCC--CHH
Q 022237 141 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN-----------------NLTMAVSMLGVSEALTLGQSLGI--SAS 201 (300)
Q Consensus 141 ~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~-----------------n~~~~~~~~~~~Ea~~l~~~~Gi--~~~ 201 (300)
+.+..+.+.++|+.-+.++....++-.....|.+- |........++.|+..++++.|. +++
T Consensus 156 ~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~ 235 (326)
T PRK14620 156 NETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLN 235 (326)
T ss_pred CHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 55555666666665554444434443333444443 34444567889999999999987 788
Q ss_pred HHH------HHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022237 202 TLT------KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 202 ~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~ 275 (300)
+++ +.+.... +..++++..+..+.++.+...-....-+.-.....+..+.++++++|+++|+.+.+++++
T Consensus 236 ~~~gl~g~gdl~~t~~--~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~-- 311 (326)
T PRK14620 236 TLIGPSCLGDLILTCT--TLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL-- 311 (326)
T ss_pred hhhccchhhhhhheec--CCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH--
Confidence 885 4442111 111122111100101101000000001112355556799999999999999999999987
Q ss_pred HHHcCCCCCchHHHHHHH
Q 022237 276 LCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 276 a~~~g~g~~d~~~~~~~~ 293 (300)
+++.+...+++.+
T Consensus 312 -----~~~~~~~~~~~~~ 324 (326)
T PRK14620 312 -----YENISLEKTISVI 324 (326)
T ss_pred -----hCCCCHHHHHHHH
Confidence 4455555555443
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=118.56 Aligned_cols=242 Identities=16% Similarity=0.193 Sum_probs=154.6
Q ss_pred ChHHHHHHHHhCC---CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAG---YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G---~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++++..|.++| ++|.+|+|++++.+.+.+. |.....++.++++++|+||+|+|.+ .+++++..+...+
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~l~~~~----- 86 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSELKGQL----- 86 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHHHHhhc-----
Confidence 7999999999999 7899999999999888775 7777778888899999999999877 7888886543222
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHH
Q 022237 77 VRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFL 153 (300)
Q Consensus 77 ~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~ 153 (300)
+++||.++ +++.. .+.+.+.. +.+++.. +...|.....+...+..+. +++.++.++.+|+
T Consensus 87 --~~~vvs~~~gi~~~---~l~~~~~~-----------~~~iv~~-~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~ 149 (267)
T PRK11880 87 --DKLVVSIAAGVTLA---RLERLLGA-----------DLPVVRA-MPNTPALVGAGMTALTANALVSAEDRELVENLLS 149 (267)
T ss_pred --CCEEEEecCCCCHH---HHHHhcCC-----------CCcEEEe-cCCchHHHcCceEEEecCCCCCHHHHHHHHHHHH
Confidence 24555444 44432 33344321 1233331 2233433334443334443 7889999999999
Q ss_pred hcCCCeEeeC-C--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CccccccCCCCCCcccC
Q 022237 154 SMGKNTIYCG-G--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA-RCWSSDSYNPVPGVMEG 229 (300)
Q Consensus 154 ~lg~~~~~~g-~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~ 229 (300)
.+|. ++++. + ...+.++-.+.+.+.+.++..+.++ +.+.|+++++..+++..... ..-........+.-+
T Consensus 150 ~lG~-~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l-- 223 (267)
T PRK11880 150 AFGK-VVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADA---GVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAEL-- 223 (267)
T ss_pred hCCe-EEEECChHhcchHHHHhcChHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--
Confidence 9997 55555 3 4444445444455555555555554 77789999999888876531 111100000000000
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 230 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 230 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
...--.|+ .-....++.+++.|++-.+.+++...++++.+.+
T Consensus 224 --~~~v~tpg-------G~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 224 --RDNVTSPG-------GTTIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred --HHhCCCCc-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 00111121 2247777888999999999999999999998864
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=116.75 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=168.2
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCChhhHHHHH-hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~~~~~~~~-~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||.+|+.+|.++| .+|++.||++++.+.+. +.|...+.+..+++..+|+||+||.. ..+++|+.++.+ .
T Consensus 12 Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP-q~~~~vl~~l~~-~---- 85 (266)
T COG0345 12 MGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP-QDLEEVLSKLKP-L---- 85 (266)
T ss_pred HHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh-HhHHHHHHHhhc-c----
Confidence 8999999999999 58999999999997554 44666577888999999999999955 599999987655 2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFL 153 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~ 153 (300)
.++++|| |-....+...+.+++.. .+++- -+...+.....|...+..+. +++..+.+.++|+
T Consensus 86 -~~~~lvI--SiaAGv~~~~l~~~l~~------------~~vvR-~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~ 149 (266)
T COG0345 86 -TKDKLVI--SIAAGVSIETLERLLGG------------LRVVR-VMPNTPALVGAGVTAISANANVSEEDKAFVEALLS 149 (266)
T ss_pred -cCCCEEE--EEeCCCCHHHHHHHcCC------------CceEE-eCCChHHHHcCcceeeecCccCCHHHHHHHHHHHH
Confidence 2346777 44555555566666532 12222 24444556666764444433 6778889999999
Q ss_pred hcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCC
Q 022237 154 SMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~ 230 (300)
.+|. ++.+.+ .....++--+.++|++.++..+.++ +.+.|++.++..+++.+.. |..-++.....-|..+
T Consensus 150 ~~G~-v~~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~L--- 222 (266)
T COG0345 150 AVGK-VVEVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAEL--- 222 (266)
T ss_pred hcCC-eEEechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---
Confidence 9996 455555 7777888888899998888888888 8999999999999888764 2221212111112222
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 231 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
..+-.+|+.+.....+ ..++.|+..-+.+++...++++.+-|
T Consensus 223 -r~~VtSPGGtTiagl~-------~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 223 -RDQVTSPGGTTIAGLR-------VLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred -HHhCcCCCchHHHHHH-------HHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 2233355555443333 34477888888888888888877654
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=123.16 Aligned_cols=185 Identities=12% Similarity=0.140 Sum_probs=129.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC----CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++||+.|.++|++|.+|+++++..+.....+.. ...++.+++++||+||+|||.+ .+.+++.++... . .
T Consensus 11 iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~~l~~~--~--l 85 (359)
T PRK06545 11 IGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLAELADL--E--L 85 (359)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhc--C--C
Confidence 89999999999999999999888776554444332 2356778889999999999997 778888665331 1 2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChH--------hhhcCceEEEec---cCHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL--------AAEAGTLTFMVG---GSEDA 144 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~--------~~~~g~~~~~~~---g~~~~ 144 (300)
+++.+|+|+++++....+.+.+.... +.+|+. +|++|++. ....+..++++. .+++.
T Consensus 86 ~~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~ 154 (359)
T PRK06545 86 KPGVIVTDVGSVKGAILAEAEALLGD-----------LIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDA 154 (359)
T ss_pred CCCcEEEeCccccHHHHHHHHHhcCC-----------CCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHH
Confidence 34589999999999888777665321 256777 68888632 122455466665 46889
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
++.++++++.+|..++++++......+.+++..-.... ++ |+...+.+.+...++..
T Consensus 155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~a--l~~~~~~~~~~~~~la~ 211 (359)
T PRK06545 155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SS--LAARLAGEHPLALRLAA 211 (359)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HH--HHHhhccCchHHHhhhc
Confidence 99999999999999988987666666666655444222 22 24555666655555543
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.9e-14 Score=123.05 Aligned_cols=184 Identities=16% Similarity=0.204 Sum_probs=124.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh--------------CCC-------------CCCCCHHHHhhcCCEEEEe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--------------MGV-------------PTKETPFEVAEASDVVITM 53 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~--------------~g~-------------~~~~~~~e~~~~adiVii~ 53 (300)
||++||..|+++|++|++||++++.++...+ .|. ...++. ++++++|+||+|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 92 (291)
T PRK06035 14 MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVEA 92 (291)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEEc
Confidence 8999999999999999999999988764321 121 133344 677999999999
Q ss_pred cCChhhhhh-hhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhc
Q 022237 54 LPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEA 131 (300)
Q Consensus 54 vp~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~ 131 (300)
+|.+..++. ++.++...+ +++++++ |+++.....++++.+.. ..++.+.||+++ |+.+.. ....
T Consensus 93 v~e~~~~k~~~~~~l~~~~-----~~~~il~--S~tsg~~~~~la~~~~~------~~r~ig~hf~~P~~~~~~v-Ev~~ 158 (291)
T PRK06035 93 VPEKLDLKRKVFAELERNV-----SPETIIA--SNTSGIMIAEIATALER------KDRFIGMHWFNPAPVMKLI-EVVR 158 (291)
T ss_pred CcCcHHHHHHHHHHHHhhC-----CCCeEEE--EcCCCCCHHHHHhhcCC------cccEEEEecCCCcccCccE-EEeC
Confidence 999865444 444333332 3445655 44554555667666542 223345777773 444332 2223
Q ss_pred CceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 132 GTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 132 g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
|.. .+++.++.+.++++.+|+.++++++.+.....|++.|++ +|++.+.++.-.+++++..++..+.
T Consensus 159 g~~-----T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~--------~ea~~~~~~g~a~~~~iD~~~~~~~ 225 (291)
T PRK06035 159 AAL-----TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWL--------LEAIRSFEIGIATIKDIDEMCKLAF 225 (291)
T ss_pred CCC-----CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHH--------HHHHHHHHcCCCCHHHHHHHHhhcC
Confidence 332 278999999999999999999998866666667665543 6888888774478999988876554
Q ss_pred C
Q 022237 212 A 212 (300)
Q Consensus 212 ~ 212 (300)
+
T Consensus 226 g 226 (291)
T PRK06035 226 G 226 (291)
T ss_pred C
Confidence 3
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=120.10 Aligned_cols=183 Identities=14% Similarity=0.173 Sum_probs=122.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------------CCCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------------GVPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------------g~~~~~~~~e~~~~adiVii~vp 55 (300)
||+++|..|+++||+|++||++++.++++.+. ++..+++++++++++|+||+|+|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavp 93 (287)
T PRK08293 14 LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVP 93 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEecc
Confidence 89999999999999999999999876655321 22346788888999999999999
Q ss_pred Chhhh-hhhhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 56 SSSHV-LDVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 56 ~~~~~-~~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
++.++ ++++.++...+ +++++| .++||..+.. +.+.+.. ..++.+.||..+|.. ..
T Consensus 94 e~~~~k~~~~~~l~~~~-----~~~~ii~sntSt~~~~~---~~~~~~~------~~r~vg~Hf~~p~~~--------~~ 151 (287)
T PRK08293 94 EDPEIKGDFYEELAKVA-----PEKTIFATNSSTLLPSQ---FAEATGR------PEKFLALHFANEIWK--------NN 151 (287)
T ss_pred CCHHHHHHHHHHHHhhC-----CCCCEEEECcccCCHHH---HHhhcCC------cccEEEEcCCCCCCc--------CC
Confidence 87554 34454333332 344566 4666665543 3333321 122223444433221 12
Q ss_pred eEEEe---ccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 134 LTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 134 ~~~~~---~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
+..++ .++++.++.+.++++.+|+.++.+..-..+..+..+.. ..++|++.+.++...+++++..++..+
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~-------~~~~ea~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLV-------PFLSAALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHH-------HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 23333 34789999999999999999888864355555554443 445999999998778999998888766
Q ss_pred CC
Q 022237 211 SA 212 (300)
Q Consensus 211 ~~ 212 (300)
.+
T Consensus 225 ~g 226 (287)
T PRK08293 225 TG 226 (287)
T ss_pred cC
Confidence 54
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=114.84 Aligned_cols=186 Identities=14% Similarity=0.158 Sum_probs=130.5
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHHHHhC--CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~~~~~--g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||++++++|.++|+ +|.+|||++++.+.+.+. |+....++.+++.++|+||+|+|+. .+++++.++.+.+
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl~~l~~~l--- 86 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLLQKLAPHL--- 86 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHHHHHHhhc---
Confidence 79999999999994 799999999998887664 5666778888899999999999765 7888886543333
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEec--cCHHHHHHHHHHH
Q 022237 75 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPLF 152 (300)
Q Consensus 75 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~--g~~~~~~~~~~ll 152 (300)
.++++||++++.- ..+.+.+.+..+ .++++. +.+.....|...+..+ .+++.++.++++|
T Consensus 87 --~~~~~iis~~ag~--~~~~L~~~~~~~----------~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll 148 (273)
T PRK07680 87 --TDEHCLVSITSPI--SVEQLETLVPCQ----------VARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLF 148 (273)
T ss_pred --CCCCEEEEECCCC--CHHHHHHHcCCC----------EEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHH
Confidence 2347889887633 344555544310 123332 2334455677555555 3567889999999
Q ss_pred HhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 153 LSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 153 ~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
+.+|. ++++.+ ......+-.+..++++.++..+.++. .++.|++.++..+++....
T Consensus 149 ~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~~ 206 (273)
T PRK07680 149 SNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEML 206 (273)
T ss_pred HcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Confidence 99995 566664 33445555556778877777777763 3448999999988877553
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-13 Score=116.73 Aligned_cols=185 Identities=16% Similarity=0.089 Sum_probs=128.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHH-----------HHhCCC-------------CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~-----------~~~~g~-------------~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..||..|+++||+|++||++++.++. +.+.|. ..++++ +.+++||+||.|+|+
T Consensus 16 mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E 94 (286)
T PRK07819 16 MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADRQLVIEAVVE 94 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCCCEEEEeccc
Confidence 8999999999999999999999998776 344342 245666 568999999999999
Q ss_pred hhhhhhhhcCCCCcccCCCC-CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhcCce
Q 022237 57 SSHVLDVYNGPNGLLQGGNS-VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v~~~~~~~l~~~~~-~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~g~~ 134 (300)
+.+++..+.+. ++.. . +++++++..||+.|.+... .... ...++.+.||+++ |+.+.. .+
T Consensus 95 ~~~~K~~l~~~---l~~~-~~~~~~il~snTS~~~~~~la--~~~~------~~~r~~g~hf~~P~~~~~lv------El 156 (286)
T PRK07819 95 DEAVKTEIFAE---LDKV-VTDPDAVLASNTSSIPIMKLA--AATK------RPGRVLGLHFFNPVPVLPLV------EL 156 (286)
T ss_pred CHHHHHHHHHH---HHHh-hCCCCcEEEECCCCCCHHHHH--hhcC------CCccEEEEecCCCcccCceE------EE
Confidence 99988876542 2221 2 4557777666665554433 3222 1233345788874 333332 22
Q ss_pred EEEeccCHHHHHHHHHHHH-hcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 135 TFMVGGSEDAYQAAKPLFL-SMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~-~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
+...+++++.++++.+++. .+|+.++.+++ ..+.....+. ...++|++.+.++...+++++..++..+.+
T Consensus 157 v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d-~pGfi~nRi~-------~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G 227 (286)
T PRK07819 157 VPTLVTSEATVARAEEFASDVLGKQVVRAQD-RSGFVVNALL-------VPYLLSAIRMVESGFATAEDIDKAMVLGCA 227 (286)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCceEecC-CCChHHHHHH-------HHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3334568999999999988 59999998876 3334443332 255689999998866789999888766543
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=112.87 Aligned_cols=165 Identities=17% Similarity=0.208 Sum_probs=113.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC-hhhHHHHHhC-CC-CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~-~~~~~~~~~~-g~-~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||++||++|+++||+|++-+|+ +++.....+. +. ....++.++++.+|+||++||.. .+.+++.++.+.+
T Consensus 12 iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-a~~~v~~~l~~~~------ 84 (211)
T COG2085 12 IGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-AIPDVLAELRDAL------ 84 (211)
T ss_pred HHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-HHHhHHHHHHHHh------
Confidence 6999999999999999998655 4444444433 32 23468899999999999999998 7788886544333
Q ss_pred CCeEEEEcCCC---------------CHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE-EEeccC
Q 022237 78 RPQLLIDSSTI---------------DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT-FMVGGS 141 (300)
Q Consensus 78 ~~~ivid~st~---------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~-~~~~g~ 141 (300)
+++||||+++. ..+.++.+++.+++..+.+. |+.+.+..+....... +... +++|.|
T Consensus 85 ~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkA------Fn~i~a~~l~~~~~~~-~~~~v~vagDD 157 (211)
T COG2085 85 GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKA------FNTIPAAVLADLAKPG-GRRDVLVAGDD 157 (211)
T ss_pred CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhh------hcccCHHHhccCCCcC-CceeEEEecCc
Confidence 35899999885 12345566666654322222 3444443333222221 3334 445557
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 142 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 142 ~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
.++.+++.+|.+.+|..++.+|++..+..+.-+..++.
T Consensus 158 ~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~t~l~i 195 (211)
T COG2085 158 AEAKAVVAELAEDIGFRPLDAGPLENARILEPGTPLLI 195 (211)
T ss_pred HHHHHHHHHHHHhcCcceeecccccccccccccchHHH
Confidence 78999999999999999999999888877776655554
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=113.71 Aligned_cols=180 Identities=16% Similarity=0.111 Sum_probs=120.9
Q ss_pred ChHHHHHHHHhCCCe---EEEEcCChhhHHHHHhC--CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~~---V~~~dr~~~~~~~~~~~--g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++|+++|.+.|++ +.+|||++++.+.+.+. +...+.++.++++++|+||+|+|+ ..+.+++.++.
T Consensus 11 mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~~vl~~l~------- 82 (258)
T PRK06476 11 ITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAEEVLRALR------- 82 (258)
T ss_pred HHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHHHHHHHhc-------
Confidence 799999999999864 58999999999888765 456677889999999999999995 48888886431
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhc
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM 155 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~l 155 (300)
..++++||+++ .+.+...+.+.+.. . ...+...|.. +.....+. +.++.++ +.++++|+.+
T Consensus 83 ~~~~~~vis~~--ag~~~~~l~~~~~~------~----~~~~r~~P~~--~~a~~~g~-t~~~~~~----~~~~~l~~~l 143 (258)
T PRK06476 83 FRPGQTVISVI--AATDRAALLEWIGH------D----VKLVRAIPLP--FVAERKGV-TAIYPPD----PFVAALFDAL 143 (258)
T ss_pred cCCCCEEEEEC--CCCCHHHHHHHhCC------C----CCEEEECCCC--hhhhCCCC-eEecCCH----HHHHHHHHhc
Confidence 12346888644 44455566655532 0 1245566662 22222333 5555543 5799999999
Q ss_pred CCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 156 GKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 156 g~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
|..++...+ ....+++- + ..+.++..+.++..++++.|+++++..+++....
T Consensus 144 G~~~~~~~e~~~d~~~a~~-s---~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 197 (258)
T PRK06476 144 GTAVECDSEEEYDLLAAAS-A---LMATYFGILETATGWLEEQGLKRQKARAYLAPLF 197 (258)
T ss_pred CCcEEECChHhccceeehh-c---cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 987663323 12222221 1 2333345677888889999999999999887553
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=114.20 Aligned_cols=183 Identities=14% Similarity=0.162 Sum_probs=118.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH-----------HHHhCCC-------------CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK-----------MFSDMGV-------------PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~-----------~~~~~g~-------------~~~~~~~e~~~~adiVii~vp~ 56 (300)
||+++|..|+++|++|++||+++++++ .+.+.|. ..+++.. .+++||+||+|+|.
T Consensus 14 mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e 92 (282)
T PRK05808 14 MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATE 92 (282)
T ss_pred HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccc
Confidence 899999999999999999999999874 3334442 2244554 47899999999988
Q ss_pred hhhhh-hhhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVL-DVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~-~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+..++ +++.++...+ ++++++ .++|+.... .+++.+.. ..++.+.||..++...+......+
T Consensus 93 ~~~~k~~~~~~l~~~~-----~~~~il~s~ts~~~~~---~la~~~~~------~~r~ig~h~~~P~~~~~~vev~~g-- 156 (282)
T PRK05808 93 NMDLKKKIFAQLDEIA-----KPEAILATNTSSLSIT---ELAAATKR------PDKVIGMHFFNPVPVMKLVEIIRG-- 156 (282)
T ss_pred cHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHHhhCC------CcceEEeeccCCcccCccEEEeCC--
Confidence 76665 5555443333 344555 233333333 55555532 223334566663322211111111
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
.+++++.++.+.++++.+|+.++++++ ..+.....+ + ...++|++.+.++.-.+++++..++..+.
T Consensus 157 ---~~t~~e~~~~~~~l~~~lGk~pv~~~d-~~g~i~~Ri---~----~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 157 ---LATSDATHEAVEALAKKIGKTPVEVKN-APGFVVNRI---L----IPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCeeEEecC-ccChHHHHH---H----HHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 245789999999999999999999975 333333222 2 35668999999886678999988876543
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=110.77 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=110.5
Q ss_pred HHHHHHhCC--CeEEEEcCChhhHHHHHhCCCCCCC-CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 5 MASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 5 la~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~~~~-~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
||+.|.++| ++|++||++++.++...+.|+.... +..+.++++|+||+|||.. .+.+++.++.+.+ +++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l~~~~~~~-----~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVLEEIAPYL-----KPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHHHHHHCGS------TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHHHHhhhhc-----CCCcE
Confidence 688999999 6899999999999999888875432 3267899999999999987 7778887654433 45689
Q ss_pred EEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCC----hH----hhhcCceEEEecc---CHHHHHHHH
Q 022237 82 LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGG----VL----AAEAGTLTFMVGG---SEDAYQAAK 149 (300)
Q Consensus 82 vid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~----~~----~~~~g~~~~~~~g---~~~~~~~~~ 149 (300)
|+|.++++....+.+.+.... ++.|+. +|++|+ +. ....|...+++.. +++.++.++
T Consensus 75 v~Dv~SvK~~~~~~~~~~~~~-----------~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~ 143 (258)
T PF02153_consen 75 VTDVGSVKAPIVEAMERLLPE-----------GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVE 143 (258)
T ss_dssp EEE--S-CHHHHHHHHHHHTS-----------SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhcCc-----------ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHH
Confidence 999999999988888877652 145554 677776 22 2225776777744 457889999
Q ss_pred HHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 150 PLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 150 ~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
++++.+|.+++.+.+-..-..+-+++.+-.
T Consensus 144 ~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH 173 (258)
T PF02153_consen 144 ELWEALGARVVEMDAEEHDRIMAYVSHLPH 173 (258)
T ss_dssp HHHHHCT-EEEE--HHHHHHHHHHHTHHHH
T ss_pred HHHHHCCCEEEEcCHHHHHHHHHHHHHHHH
Confidence 999999999998876566666666655444
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-12 Score=111.36 Aligned_cols=162 Identities=13% Similarity=0.192 Sum_probs=116.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC--CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~--~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++++..|.+.|+ +|++|||++++.+.+.+.|.. ...++.++++++|+||+|+|.. ...+++.++.+.+
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~~~l~~~l----- 90 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVAAEIAPHL----- 90 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHHHHHHhhC-----
Confidence 79999999999995 899999999998888877753 3457788889999999999987 5666665433222
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChH----hh----hcCceEEEe---ccCHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVL----AA----EAGTLTFMV---GGSEDA 144 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~----~~----~~g~~~~~~---~g~~~~ 144 (300)
+++.+|+|++++++...+.+.+.... +++|+.+ |+.|++. .+ ..|...+++ +++++.
T Consensus 91 ~~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~ 159 (307)
T PRK07502 91 KPGAIVTDVGSVKASVIAAMAPHLPE-----------GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA 159 (307)
T ss_pred CCCCEEEeCccchHHHHHHHHHhCCC-----------CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHH
Confidence 34578999999988777666554321 2567774 8876432 11 134434444 457888
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
++.++++++.+|.+++++++-.....+-++..+..
T Consensus 160 ~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph 194 (307)
T PRK07502 160 VARLTAFWRALGARVEEMDPEHHDLVLAITSHLPH 194 (307)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHH
Confidence 99999999999999999887555555555554433
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=106.99 Aligned_cols=229 Identities=14% Similarity=0.126 Sum_probs=146.7
Q ss_pred CCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 022237 13 GYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 13 G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~ 91 (300)
.++|++|+|++++++.+.+. |...+.++.++++++|+||+||+ |.++++++.++...+ .++++||.++.. -
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~l~~~~-----~~~~~ivS~~ag--i 80 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVLSELKSEK-----GKDKLLISIAAG--V 80 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHHHHHhhhc-----cCCCEEEEecCC--C
Confidence 46899999999999888664 77777888999999999999998 569999987654322 233677754432 3
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHHhcCCCeEeeCC--ccH
Q 022237 92 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--AGN 167 (300)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~lg~~~~~~g~--~g~ 167 (300)
....+.+.+.. + .. +-.-+...+.....|...+..+. +++..+.++++|+.+|.. +.+.+ +..
T Consensus 81 ~~~~l~~~~~~-------~----~~-ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~v~E~~~~~ 147 (245)
T TIGR00112 81 TLEKLSQLLGG-------T----RR-VVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEV-VELPEALMDA 147 (245)
T ss_pred CHHHHHHHcCC-------C----Ce-EEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCE-EEECHHHcch
Confidence 33345554431 0 11 22223344445555654444442 456778999999999964 45554 777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CccccccCCCCCCcccCCCCCCCCCCCcchhhHH
Q 022237 168 GAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA-RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA 246 (300)
Q Consensus 168 a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (300)
..++--+.+++.+.++..+.++ +.+.|+++++..+++.+... ..-+......-+.- +.++--.|+..
T Consensus 148 ~talsgsgPA~~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~----l~~~v~spgGt----- 215 (245)
T TIGR00112 148 VTALSGSGPAYVFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPAL----LKDQVTSPGGT----- 215 (245)
T ss_pred HHhhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHcCCCCcHH-----
Confidence 7888888999999999888887 88899999999998887642 21111111000111 11112233222
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 247 KDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 247 kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
....++..++.|+.--+.+++...++++
T Consensus 216 --T~~gl~~Le~~~~~~~~~~a~~aa~~r~ 243 (245)
T TIGR00112 216 --TIAGLAVLEEKGVRGAVIEAVEAAVRRS 243 (245)
T ss_pred --HHHHHHHHHHCChHHHHHHHHHHHHHHh
Confidence 3455566677777766666666666554
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=106.90 Aligned_cols=236 Identities=10% Similarity=0.054 Sum_probs=157.1
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++|++.|.++|+ ++++++|++++. +.....++.++++++|+||+|+|.. .+++++.++.+.+
T Consensus 14 mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~-~~~~vl~~i~~~l----- 81 (260)
T PTZ00431 14 MGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPD-LAGKVLLEIKPYL----- 81 (260)
T ss_pred HHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHH-HHHHHHHHHHhhc-----
Confidence 89999999999873 499999987652 3344567888889999999999765 8899987654433
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc---CHHHHHHHHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFL 153 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~ 153 (300)
.++.+|.++++++.+..+++ +.. . .. +-.-+.+.|.....+. ++++.. +++..+.++.+|+
T Consensus 82 ~~~~iIS~~aGi~~~~l~~~---~~~-------~----~~-vvr~mPn~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~~ 145 (260)
T PTZ00431 82 GSKLLISICGGLNLKTLEEM---VGV-------E----AK-IVRVMPNTPSLVGQGS-LVFCANNNVDSTDKKKVIDIFS 145 (260)
T ss_pred cCCEEEEEeCCccHHHHHHH---cCC-------C----Ce-EEEECCCchhHhccee-EEEEeCCCCCHHHHHHHHHHHH
Confidence 23467889999997766544 221 0 01 1122334444444444 444433 4667899999999
Q ss_pred hcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCC
Q 022237 154 SMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~ 230 (300)
.+|.. +.+.+ +....++--+.+++++.++..+.++ +.+.|++.++..+++.+.. |..-++.....-|.-
T Consensus 146 ~~G~~-~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~---- 217 (260)
T PTZ00431 146 ACGII-QEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQ---- 217 (260)
T ss_pred hCCcE-EEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----
Confidence 99975 45554 7888888888899999999999988 8899999999999887664 221111111101111
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 231 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
+.++--+|+-. ....+...++.|+.--+.+++..-++++.+.
T Consensus 218 l~~~v~spgG~-------T~~gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 218 LKDDVCSPGGI-------TIVGLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred HHHhCCCCChH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 11222344332 3445566677888887888887777776654
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=107.96 Aligned_cols=165 Identities=22% Similarity=0.210 Sum_probs=106.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------CCC---CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------GVP---TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~---~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||++++..|+++||+|++|+|++++++.+... |.. ...+..++++++|+||+|+|.+ .+++++.++..
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-~~~~~l~~l~~ 90 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-HVLKTLESLRD 90 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-HHHHHHHHHHH
Confidence 78999999999999999999999988776542 211 1246678899999999999987 77777764432
Q ss_pred cccCCCCCCCeEEEEcCCCCHH---------------HHHHHHHHHhh-hhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 70 LLQGGNSVRPQLLIDSSTIDPQ---------------TSRNISAAVSN-CILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~p~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
.+ .+++|||+++..+. ..+.+++.+.. ..+.+ .+..+.+.+..++. ...+.
T Consensus 91 ~l------~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVk------a~~~~~a~~~~~~~-~~~~~ 157 (219)
T TIGR01915 91 EL------SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVA------AFHNLSAVLLQDVD-DEVDC 157 (219)
T ss_pred hc------cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEee------ccccCCHHHhcCCC-CCCCC
Confidence 22 23789998764332 12444444431 10000 01122222222211 11123
Q ss_pred eEEEeccCHHHHHHHHHHHHhc-CCCeEeeCCccHHHHHHHHHHHHH
Q 022237 134 LTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 134 ~~~~~~g~~~~~~~~~~ll~~l-g~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
..+++|.++++.+++..|.+.+ |..++++|++..+..+.....++.
T Consensus 158 ~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~l~~ 204 (219)
T TIGR01915 158 DVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTPLLI 204 (219)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHHHHH
Confidence 2445555678899999999999 999999999877777665544443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-11 Score=104.80 Aligned_cols=162 Identities=15% Similarity=0.205 Sum_probs=117.7
Q ss_pred ChHHHHHHHHhCCCeEEEE--cCChhhHHHHHhCCCCCC--CCH-HHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGYKMAVH--DVNCNVMKMFSDMGVPTK--ETP-FEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~--dr~~~~~~~~~~~g~~~~--~~~-~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||+++|+.|.++|+.|.+| |++.+......+.|+... .+. .+.+..+|+||+|||-. ++.+++.++...
T Consensus 14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l~~l~~~----- 87 (279)
T COG0287 14 MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVLKELAPH----- 87 (279)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHHHHhccc-----
Confidence 8999999999999988666 555555555555665432 233 67778899999999997 778888765442
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCCh--HhhhcCceEEEecc---CHHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--LAAEAGTLTFMVGG---SEDAYQAAK 149 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~--~~~~~g~~~~~~~g---~~~~~~~~~ 149 (300)
.++|.+|+|.++++....+.+.+...+. .+|+. +|++|++ .....+...+++-+ +.+.++++.
T Consensus 88 l~~g~iv~Dv~S~K~~v~~a~~~~~~~~-----------~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~ 156 (279)
T COG0287 88 LKKGAIVTDVGSVKSSVVEAMEKYLPGD-----------VRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVK 156 (279)
T ss_pred CCCCCEEEecccccHHHHHHHHHhccCC-----------CeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHH
Confidence 3567999999999999888887765420 24554 6888883 33445665666654 456889999
Q ss_pred HHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 150 PLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 150 ~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
++|+.+|.+++++.+-..-..+-.++.+-.
T Consensus 157 ~~~~~~ga~~v~~~~eeHD~~~a~vshLpH 186 (279)
T COG0287 157 RLWEALGARLVEMDAEEHDRVMAAVSHLPH 186 (279)
T ss_pred HHHHHcCCEEEEcChHHHhHHHHHHHHHHH
Confidence 999999999999887566666666655444
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-11 Score=103.66 Aligned_cols=184 Identities=16% Similarity=0.216 Sum_probs=128.1
Q ss_pred ChHHHHHHHHhCCC---e-EEEEcC-ChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAGY---K-MAVHDV-NCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G~---~-V~~~dr-~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||.+++..|.++|+ + +++++| ++++.+.+.+. ++..+.++.++++++|+||+|+|++ ..++++.++...+
T Consensus 15 mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~v~~~l~~~~--- 90 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEELLAELSPLL--- 90 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHHHHHHHHhhc---
Confidence 78999999998873 3 778887 57888877654 6666678889999999999999987 7788886544332
Q ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEec--cCHHHHHHHHHH
Q 022237 75 NSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSEDAYQAAKPL 151 (300)
Q Consensus 75 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~--g~~~~~~~~~~l 151 (300)
. +++||.++ ++... .+.+.+.. + .......|.+ +.....+...+.++ .+++..+.++++
T Consensus 91 --~-~~~vis~~~gi~~~---~l~~~~~~-------~---~~v~r~~Pn~--a~~v~~g~~~~~~~~~~~~~~~~~v~~l 152 (245)
T PRK07634 91 --S-NQLVVTVAAGIGPS---YLEERLPK-------G---TPVAWIMPNT--AAEIGKSISLYTMGQSVNETHKETLQLI 152 (245)
T ss_pred --c-CCEEEEECCCCCHH---HHHHHcCC-------C---CeEEEECCcH--HHHHhcCCeEEeeCCCCCHHHHHHHHHH
Confidence 2 35666554 44444 34444431 0 0112334532 23344454333333 478889999999
Q ss_pred HHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 152 FLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 152 l~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
|+.+|..+. +.+ ....+++--+...+++.++..+.++ +.+.|++.++..+++...
T Consensus 153 f~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 153 LKGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 999998765 443 6777777777888888888888887 888999999998888754
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-11 Score=104.57 Aligned_cols=251 Identities=12% Similarity=0.130 Sum_probs=148.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~ 67 (300)
||+.+|..|+++||+|++|+| +++.+.+.+.|.. ..++..+..+.+|+||+|+|.. ++++++..+
T Consensus 11 iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~-~~~~~~~~l 88 (305)
T PRK12921 11 VGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY-QLDAAIPDL 88 (305)
T ss_pred HHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-CHHHHHHHH
Confidence 699999999999999999999 8888888765531 1335556668999999999987 778887655
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc----CHH
Q 022237 68 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG----SED 143 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g----~~~ 143 (300)
...+ .++++||...+.- .....+.+.+... ....++.+..++..++..-...+.-.+.+|. ..+
T Consensus 89 ~~~~-----~~~~~ii~~~nG~-~~~~~l~~~~~~~------~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~ 156 (305)
T PRK12921 89 KPLV-----GEDTVIIPLQNGI-GQLEQLEPYFGRE------RVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSE 156 (305)
T ss_pred Hhhc-----CCCCEEEEeeCCC-ChHHHHHHhCCcc------cEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCH
Confidence 4433 2335666444321 2223444444321 0011234444444332111111221333443 234
Q ss_pred HHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCC--H
Q 022237 144 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGIS--A 200 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gi~--~ 200 (300)
..+.+.++|...+..+....++-...-.|++.|... .....++.|+..++++.|++ .
T Consensus 157 ~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 236 (305)
T PRK12921 157 RTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRD 236 (305)
T ss_pred HHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 566777888887776665566777888888877543 23557789999999999976 3
Q ss_pred HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022237 201 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 277 (300)
Q Consensus 201 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 277 (300)
+...+.+..-.... ....+.+.+ |+..+-.. +...=...++++++++|+++|..+.+++++....
T Consensus 237 ~~~~~~~~~~~~~~-----~~~~sSm~~------D~~~gr~t-Eid~i~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 237 DVVEEIVKIFAGAP-----GDMKTSMLR------DMEKGRPL-EIDHLQGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred hHHHHHHHHHhccC-----CCCCcHHHH------HHHcCCcc-cHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 34444333211000 000111221 11111111 1111135799999999999999999999987653
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=103.22 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=111.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCC-CCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGP-NGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~-~~~l~~~~~~~ 78 (300)
||+++++.|.+.|++|++||+++.. +.....|+....+..+++ .++|+||+|+|.. .+.+++.++ ... .++
T Consensus 47 mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l~~~~-----l~~ 119 (304)
T PLN02256 47 FGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSLPLQR-----LKR 119 (304)
T ss_pred HHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhhhhhc-----cCC
Confidence 7999999999999999999999743 444456776667788876 4799999999986 778888654 222 235
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHh--hhcCceEEEec-------cCHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLA--AEAGTLTFMVG-------GSEDAYQAA 148 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~--~~~g~~~~~~~-------g~~~~~~~~ 148 (300)
+++|+|.++++....+.+.+.+.. +..|+. +|++|.... ...+...++.. .+++..+.+
T Consensus 120 ~~iviDv~SvK~~~~~~~~~~l~~-----------~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 188 (304)
T PLN02256 120 STLFVDVLSVKEFPKNLLLQVLPE-----------EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERF 188 (304)
T ss_pred CCEEEecCCchHHHHHHHHHhCCC-----------CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHH
Confidence 589999999988877777766532 133443 577776532 12233233322 256788999
Q ss_pred HHHHHhcCCCeEeeCCccHHHHHHHHH
Q 022237 149 KPLFLSMGKNTIYCGGAGNGAAAKICN 175 (300)
Q Consensus 149 ~~ll~~lg~~~~~~g~~g~a~~~k~~~ 175 (300)
+++++.+|.+++.+.+-..-..+-.++
T Consensus 189 ~~l~~~lGa~v~~~~~eeHD~~vA~iS 215 (304)
T PLN02256 189 LDIFEEEGCRMVEMSCEEHDRYAAGSQ 215 (304)
T ss_pred HHHHHHCCCEEEEeCHHHHhHHHHhhh
Confidence 999999999999998755555555444
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-11 Score=104.08 Aligned_cols=185 Identities=11% Similarity=0.075 Sum_probs=128.1
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCCh-hhHHHHHhC--CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~-~~~~~~~~~--g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||++++++|.++| ++|.+|+|++ ++.+.+... +.....+..++++++|+||+|+|.. .+++++.++...+
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~vl~~l~~~l-- 88 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPLLKDCAPVL-- 88 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHHHHHHHhhc--
Confidence 7999999999998 7899999865 445555443 2334567888899999999999865 8888887654333
Q ss_pred CCCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHH
Q 022237 74 GNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKP 150 (300)
Q Consensus 74 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ 150 (300)
.++++||... ++... ++.+.+.. .. +-.-+...+.....|...+..+. +++..+.++.
T Consensus 89 ---~~~~~ivS~~aGi~~~---~l~~~~~~------------~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~ 149 (277)
T PRK06928 89 ---TPDRHVVSIAAGVSLD---DLLEITPG------------LQ-VSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEE 149 (277)
T ss_pred ---CCCCEEEEECCCCCHH---HHHHHcCC------------CC-EEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHH
Confidence 2335556433 34433 44444421 11 22223444555556654443332 5677889999
Q ss_pred HHHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHhcC
Q 022237 151 LFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILNSSS 211 (300)
Q Consensus 151 ll~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-Gi~~~~~~~~~~~~~ 211 (300)
+|+.+|.. +.+.+ +....++--+..+|++.++.++.++ +.+. |++.++..+++.+..
T Consensus 150 l~~~~G~~-~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~ 209 (277)
T PRK06928 150 TLSHFSHV-MTIREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFAL 209 (277)
T ss_pred HHHhCCCE-EEEchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHH
Confidence 99999974 45544 7777888888899998888888888 7787 799999999887664
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=111.93 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=107.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh-cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~-~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+++|++|.+.|++|++|||+... +...+.|+....++.+++. .+|+||+|||.. .+.+++.+... .. .+++
T Consensus 380 mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~-~~~~vi~~l~~--~~--lk~g 453 (667)
T PLN02712 380 FGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSIL-STEKVLKSLPF--QR--LKRS 453 (667)
T ss_pred HHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChH-HHHHHHHHHHH--hc--CCCC
Confidence 7999999999999999999999654 4555667766678888775 589999999975 77887765421 01 2456
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcC--ceE-----EEeccCHHH---HHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLT-----FMVGGSEDA---YQAA 148 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g--~~~-----~~~~g~~~~---~~~~ 148 (300)
++|+|+++++....+.+.+.+.. ++.|+ .+|++|.... ..| ... .+++++.+. .+.+
T Consensus 454 ~ivvDv~SvK~~~~~~~~~~l~~-----------~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l 521 (667)
T PLN02712 454 TLFVDVLSVKEFPRNLFLQHLPQ-----------DFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSF 521 (667)
T ss_pred cEEEECCCccHHHHHHHHHhccC-----------CCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHH
Confidence 89999999986666666555432 25667 7899887643 111 111 234555444 4455
Q ss_pred HHHHHhcCCCeEeeCCccHHHHHHH
Q 022237 149 KPLFLSMGKNTIYCGGAGNGAAAKI 173 (300)
Q Consensus 149 ~~ll~~lg~~~~~~g~~g~a~~~k~ 173 (300)
.++++.+|.+++.+.+-..-..+-.
T Consensus 522 ~~l~~~lGa~vv~ms~eeHD~~~A~ 546 (667)
T PLN02712 522 LDIFAREGCRMVEMSCAEHDWHAAG 546 (667)
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHH
Confidence 6999999999999876454444443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-10 Score=100.48 Aligned_cols=250 Identities=13% Similarity=0.159 Sum_probs=143.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-----------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||+.+|..|+++||+|++|+|++++.+.+.+.|.. ...++.+. +.+|+||+|+|.. ++++++..+..
T Consensus 11 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~~~~~~~~l~~ 88 (304)
T PRK06522 11 IGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-QLPAALPSLAP 88 (304)
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-cHHHHHHHHhh
Confidence 79999999999999999999999988888776652 23455555 8999999999987 77888876554
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCC--ChHhhhcCceEEEecc-C--HHH
Q 022237 70 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLTFMVGG-S--EDA 144 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g--~~~~~~~g~~~~~~~g-~--~~~ 144 (300)
.+. ++++||...+.- ...+.+.+.+....+ ..++.+..+-..+ .......+. +.+|. + .+.
T Consensus 89 ~l~-----~~~~iv~~~nG~-~~~~~l~~~~~~~~i------~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~ 154 (304)
T PRK06522 89 LLG-----PDTPVLFLQNGV-GHLEELAAYIGPERV------LGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGESAA 154 (304)
T ss_pred hcC-----CCCEEEEecCCC-CcHHHHHHhcCcccE------EEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCcHH
Confidence 442 234555444422 222334443332100 0011111111111 111122233 22332 2 233
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCC--HH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGIS--AS 201 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gi~--~~ 201 (300)
.+.+.++|+..+..+....++....-.|++.|... ......+.|+..++++.|++ .+
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 234 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE 234 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 56778888887776555555666667776666422 23556789999999999865 34
Q ss_pred HHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 202 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 202 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
.+.+.+....... .. ..+.+.++.. .+.... ...=...++++++++|+++|..+.++++++...+
T Consensus 235 ~~~~~~~~~~~~~--~~---~~sSm~~D~~-~gr~tE------id~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 235 EVREYVRQVIQKT--AA---NTSSMLQDLE-AGRPTE------IDAIVGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred HHHHHHHHHhhcc--CC---CCchHHHHHH-cCCCcc------cchhccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 4444433221000 00 1111222111 111110 1112366889999999999999999998876644
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-11 Score=98.50 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=85.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------------CCCCCCCHHHHhhcCCEEEEecCChh--
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVVITMLPSSS-- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~e~~~~adiVii~vp~~~-- 58 (300)
+|.++|..|+++||+|+++|.++++++.+++. ....+.+..++++++|++|+|||+|.
T Consensus 11 vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~ 90 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDE 90 (185)
T ss_dssp THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBET
T ss_pred chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccc
Confidence 58999999999999999999999999888653 13456678888999999999999873
Q ss_pred -------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh-
Q 022237 59 -------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE- 130 (300)
Q Consensus 59 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~- 130 (300)
.+++++..+...+ .++++||..||+.|.+++++.+.+-+. ..+...++++..+|.+-.+..+.
T Consensus 91 ~~~~Dls~v~~a~~~i~~~l-----~~~~lvV~~STvppGtt~~~~~~ile~----~~~~~~~f~la~~PErl~~G~a~~ 161 (185)
T PF03721_consen 91 DGSPDLSYVESAIESIAPVL-----RPGDLVVIESTVPPGTTEELLKPILEK----RSGKKEDFHLAYSPERLREGRAIE 161 (185)
T ss_dssp TTSBETHHHHHHHHHHHHHH-----CSCEEEEESSSSSTTHHHHHHHHHHHH----HCCTTTCEEEEE------TTSHHH
T ss_pred cCCccHHHHHHHHHHHHHHH-----hhcceEEEccEEEEeeehHhhhhhhhh----hcccccCCeEEECCCccCCCCcch
Confidence 2334443322222 456899999999999999655444331 11111347788889765443322
Q ss_pred --cCceEEEeccCHH-HHHHHHHH
Q 022237 131 --AGTLTFMVGGSED-AYQAAKPL 151 (300)
Q Consensus 131 --~g~~~~~~~g~~~-~~~~~~~l 151 (300)
...-.++.|.+++ ..+++++|
T Consensus 162 d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 162 DFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp HHHSSSEEEEEESSHHHHHHHHHH
T ss_pred hccCCCEEEEeCCcHHHHHHHhcC
Confidence 2333566666554 43466553
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-10 Score=101.62 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=108.6
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+|+.|.+. |++|++||++.+ ...++.+.+++||+||+|+|.. .+.+++.++....+. .+++
T Consensus 16 iGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~~~--l~~~ 81 (370)
T PRK08818 16 YGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIR-HTAALIEEYVALAGG--RAAG 81 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhhcC--CCCC
Confidence 899999999974 889999998511 2346778899999999999998 777788765443211 2466
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChH-hhhcCceEEEecc-CHHHHHHHHHHHHhcC
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL-AAEAGTLTFMVGG-SEDAYQAAKPLFLSMG 156 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~-~~~~g~~~~~~~g-~~~~~~~~~~ll~~lg 156 (300)
++|+|.++++....+.+.+. +..|+. +|++|++. ....+...+++.. ..+..+.++++++.+|
T Consensus 82 ~iVtDVgSvK~~i~~~~~~~--------------~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~G 147 (370)
T PRK08818 82 QLWLDVTSIKQAPVAAMLAS--------------QAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQ 147 (370)
T ss_pred eEEEECCCCcHHHHHHHHhc--------------CCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcC
Confidence 89999999998777665321 134554 68888753 3345666677765 3455788999999999
Q ss_pred CCeEeeCCccHHHHHHHHHHH
Q 022237 157 KNTIYCGGAGNGAAAKICNNL 177 (300)
Q Consensus 157 ~~~~~~g~~g~a~~~k~~~n~ 177 (300)
.+++.+.+...-..+-.++.+
T Consensus 148 a~v~~~~aeeHD~~~A~vS~L 168 (370)
T PRK08818 148 AECVYATPEHHDRVMALVQAM 168 (370)
T ss_pred CEEEEcCHHHHHHHHHHHHHH
Confidence 999999876666777766533
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.1e-10 Score=94.92 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=156.1
Q ss_pred CeEEEEcCChhhHHHHHhC-------------------CCCCCCCHHHHhhcCCEEEEecCChhhhh-------------
Q 022237 14 YKMAVHDVNCNVMKMFSDM-------------------GVPTKETPFEVAEASDVVITMLPSSSHVL------------- 61 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~adiVii~vp~~~~~~------------- 61 (300)
.+|+++|.|..++..++.. +.-..++.+.+++++|+||+.|.+|.-..
T Consensus 27 i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~ 106 (481)
T KOG2666|consen 27 IEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYW 106 (481)
T ss_pred eEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHH
Confidence 3788999999988877653 23345678899999999999997763221
Q ss_pred -hhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc---CceEEE
Q 022237 62 -DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA---GTLTFM 137 (300)
Q Consensus 62 -~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~---g~~~~~ 137 (300)
+....+.++ ....+||+.-||+....++.+...+... ..| ..+..++.|.|-.+..+.. ..=.++
T Consensus 107 es~ar~ia~~-----s~~~kivvekstvpv~aaesi~~il~~n----~~~--i~fqilsnpeflaegtaikdl~npdrvl 175 (481)
T KOG2666|consen 107 ESAARMIADV-----SVSDKIVVEKSTVPVKAAESIEKILNHN----SKG--IKFQILSNPEFLAEGTAIKDLFNPDRVL 175 (481)
T ss_pred HHHHHHHHHh-----ccCCeEEEeeccccchHHHHHHHHHhcC----CCC--ceeEeccChHHhcccchhhhhcCCceEE
Confidence 111111111 1344899999999999999999888532 122 1256777886654333222 111577
Q ss_pred eccC--HH---HHHHHHHHHHhcCCC-eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 138 VGGS--ED---AYQAAKPLFLSMGKN-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 138 ~~g~--~~---~~~~~~~ll~~lg~~-~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
+||+ ++ +.+.+..+++.+-.+ -+.....-+++.-|++.|++.+--+.+++-+.++|++.|.|..++..+++..+
T Consensus 176 igg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg~d~ 255 (481)
T KOG2666|consen 176 IGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTDS 255 (481)
T ss_pred ECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhcccc
Confidence 8884 33 555566666666432 23344579999999999999999999999999999999999999988887554
Q ss_pred CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC
Q 022237 212 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD 262 (300)
Q Consensus 212 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~ 262 (300)
. -++.+++ -.-||...++.||+-.++.+++-+|+|
T Consensus 256 r---------ig~kfl~-------asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 256 R---------IGSKFLN-------ASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred c---------ccHHHhh-------cccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 1 1122221 134788899999999999999999987
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-10 Score=111.38 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=115.0
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhCCCC--CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~--~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||.++++.|.++| ++|++||+++++++.+.+.|.. ...+..++++++|+||+|+|.. .+++++..+...+
T Consensus 14 mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~~l~~~~----- 87 (735)
T PRK14806 14 IGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLADLKPLL----- 87 (735)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHHHHHHhc-----
Confidence 7999999999999 4899999999998888877764 4456788899999999999986 7888886544333
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceE-EEeccCCChHh--------hhcCceEEEec---cCHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLA--------AEAGTLTFMVG---GSEDA 144 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~g~~~~--------~~~g~~~~~~~---g~~~~ 144 (300)
+++.+|+|++++++...+.+.+.+... .++| ..+|++|++.. -..+...+++. ++++.
T Consensus 88 ~~~~ii~d~~svk~~~~~~l~~~~~~~----------~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 88 SEHAIVTDVGSTKGNVVDAARAVFGEL----------PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred CCCcEEEEcCCCchHHHHHHHHhcccc----------CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 345799999999988888877765421 1444 45788766431 11233344443 46778
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHH
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 174 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~ 174 (300)
++.++++|+.+|..++++.+-.....+-++
T Consensus 158 ~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~ 187 (735)
T PRK14806 158 LARVDRLWRAVGADVLHMDVAHHDEVLAAT 187 (735)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHh
Confidence 899999999999988888763333333333
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=99.85 Aligned_cols=184 Identities=13% Similarity=0.168 Sum_probs=122.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||+.||..++..|++|+++|++++.+++... .| +....++. ++++||+||.++|.
T Consensus 14 MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E 92 (307)
T COG1250 14 MGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVVE 92 (307)
T ss_pred hhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-HhccCCEEEEeccc
Confidence 9999999999988999999999776543322 22 22333333 68999999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++.- +.+++.+. +++.|+- ++|+.++. ++++.+.+ +.++.+.||+.+|..........|.
T Consensus 93 ~levK~~vf~~l~~~~-----~~~aIlASNTSsl~it---~ia~~~~r------per~iG~HFfNP~~~m~LVEvI~g~- 157 (307)
T COG1250 93 DLELKKQVFAELEALA-----KPDAILASNTSSLSIT---ELAEALKR------PERFIGLHFFNPVPLMPLVEVIRGE- 157 (307)
T ss_pred cHHHHHHHHHHHHhhc-----CCCcEEeeccCCCCHH---HHHHHhCC------chhEEEEeccCCCCcceeEEEecCC-
Confidence 9888654 44444443 2323332 44444444 55555532 3445567888766444322222221
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
-.+++.++++.++.+.+|+.++...+ -.+.....+.- ....|+..+..+...+++++..++..+.|
T Consensus 158 ----~T~~e~~~~~~~~~~~igK~~vv~~D-~pGFi~NRil~-------~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 158 ----KTSDETVERVVEFAKKIGKTPVVVKD-VPGFIVNRLLA-------ALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCCEeecC-CCceehHhHHH-------HHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 12688999999999999987755454 44445444433 45589999999988999999999887654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=106.37 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=109.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+++.|.+.|++|++|||+... ....+.|+....++.+++ .++|+||+|||.. .+.+++.++. ... .+++
T Consensus 63 mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~-~~~~vl~~l~--~~~--l~~g 136 (667)
T PLN02712 63 YGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSII-STENVLKSLP--LQR--LKRN 136 (667)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHH-HHHHHHHhhh--hhc--CCCC
Confidence 7999999999999999999998554 455566777777888865 5699999999976 8888887642 111 2456
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHh--hhcCceEEEec---c-CH---HHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLA--AEAGTLTFMVG---G-SE---DAYQAAK 149 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~--~~~g~~~~~~~---g-~~---~~~~~~~ 149 (300)
++|+|+++++....+.+.+.+.. ++.|+ .+|++|.... ...+...++.+ + ++ +..+.++
T Consensus 137 ~iVvDv~SvK~~~~~~l~~~l~~-----------~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (667)
T PLN02712 137 TLFVDVLSVKEFAKNLLLDYLPE-----------DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFL 205 (667)
T ss_pred eEEEECCCCcHHHHHHHHHhcCC-----------CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHH
Confidence 89999999998777767666542 13444 4788887632 12233234442 2 22 3456677
Q ss_pred HHHHhcCCCeEeeCCccHHHHHHHHH
Q 022237 150 PLFLSMGKNTIYCGGAGNGAAAKICN 175 (300)
Q Consensus 150 ~ll~~lg~~~~~~g~~g~a~~~k~~~ 175 (300)
++|+.+|.+++.+.+-..-..+-.++
T Consensus 206 ~l~~~lGa~v~~ms~eeHD~~~A~vs 231 (667)
T PLN02712 206 EVFEREGCKMVEMSCTEHDKYAAESQ 231 (667)
T ss_pred HHHHHcCCEEEEeCHHHHHHHHHHHH
Confidence 99999999999997655554444444
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-10 Score=109.65 Aligned_cols=184 Identities=14% Similarity=0.121 Sum_probs=120.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..||..++.+||+|++||++++.++.. .+.| +..+.+. +.+++||+||-|+|.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERVDVVVEAVVE 402 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEecccC
Confidence 89999999999999999999999876432 1112 2334455 557999999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 135 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~ 135 (300)
+.+++.- +.+++.++ +++.|+. |+++.-...++++.+.. +.++.+.||+.+|..-.......+.
T Consensus 403 ~l~~K~~vf~~l~~~~-----~~~~ila--sNTSsl~i~~la~~~~~------p~r~~g~Hff~P~~~~~lVEvv~g~-- 467 (715)
T PRK11730 403 NPKVKAAVLAEVEQKV-----REDTILA--SNTSTISISLLAKALKR------PENFCGMHFFNPVHRMPLVEVIRGE-- 467 (715)
T ss_pred cHHHHHHHHHHHHhhC-----CCCcEEE--EcCCCCCHHHHHhhcCC------CccEEEEecCCcccccceEEeeCCC--
Confidence 9887654 44344443 3333443 33333333355555542 3445556777655333221111111
Q ss_pred EEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 136 FMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 136 ~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
..+++.++.+..+++.+|+.++.+.+ ..+.....+.- ..++|++.+.++ |.+++++..++..+.|
T Consensus 468 ---~T~~~~~~~~~~~~~~lgk~pv~v~d-~pGfv~nRi~~-------~~~~ea~~lv~~-Ga~~e~ID~a~~~~~G 532 (715)
T PRK11730 468 ---KTSDETIATVVAYASKMGKTPIVVND-CPGFFVNRVLF-------PYFAGFSQLLRD-GADFRQIDKVMEKQFG 532 (715)
T ss_pred ---CCCHHHHHHHHHHHHHhCCceEEecC-cCchhHHHHHH-------HHHHHHHHHHHc-CCCHHHHHHHHHhhCC
Confidence 23789999999999999999998865 44555544433 345799888876 4999999888876543
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-10 Score=109.30 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=121.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..||..++.+|++|+++|++++.+++..+ .| +..+.+. +.+++||+||-|||.
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~E 402 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNVDIVVEAVVE 402 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEEcCcc
Confidence 8999999999999999999999987654321 11 2334455 457999999999999
Q ss_pred hhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++. ++.+++.+. ++++|+. ++|+.+. .++++.+.+ +.++.+.||+.+|..-.......|.
T Consensus 403 ~l~~K~~vf~~l~~~~-----~~~~ilasnTS~l~i---~~ia~~~~~------p~r~ig~Hff~P~~~~~lvEvv~g~- 467 (714)
T TIGR02437 403 NPKVKAAVLAEVEQHV-----REDAILASNTSTISI---SLLAKALKR------PENFCGMHFFNPVHRMPLVEVIRGE- 467 (714)
T ss_pred cHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCH---HHHHhhcCC------cccEEEEecCCCcccCceEeecCCC-
Confidence 988765 444444443 3333433 3333333 355555442 4455567777755333322211111
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 212 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 212 (300)
..+++.++.+.++++.+|+.++.+.+ ..+.....+.- ..+.|++.+.++ |.+++++.+++..+.|
T Consensus 468 ----~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGfi~NRl~~-------~~~~ea~~l~~e-G~~~~~ID~a~~~~~G 532 (714)
T TIGR02437 468 ----KSSDETIATVVAYASKMGKTPIVVND-CPGFFVNRVLF-------PYFGGFSKLLRD-GADFVRIDKVMEKQFG 532 (714)
T ss_pred ----CCCHHHHHHHHHHHHHcCCEEEEeCC-cccchHHHHHH-------HHHHHHHHHHHC-CCCHHHHHHHHHhcCC
Confidence 23689999999999999999999875 44444443322 445899999876 6999999888876543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-09 Score=93.94 Aligned_cols=182 Identities=15% Similarity=0.088 Sum_probs=111.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.++|++|...|++|++++++.++. +...+.|.... ++.+++++||+|+++||+. ...+++.+ .+.+. .+++
T Consensus 28 mG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~~~--~I~~~--Lk~g 101 (330)
T PRK05479 28 QGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVYEE--EIEPN--LKEG 101 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHHHH--HHHhc--CCCC
Confidence 79999999999999999988775544 33444576554 8899999999999999987 45777731 13322 3456
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCCh-Hh----hhcCceEEE-eccC--HHHHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGV-LA----AEAGTLTFM-VGGS--EDAYQAAKP 150 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~-~~----~~~g~~~~~-~~g~--~~~~~~~~~ 150 (300)
++|+.+++......+ ...+. ++.++ -+|-..+. .. ...|...++ +..| .++.+.+..
T Consensus 102 ~iL~~a~G~~i~~~~---~~p~~-----------~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~ 167 (330)
T PRK05479 102 AALAFAHGFNIHFGQ---IVPPA-----------DVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALA 167 (330)
T ss_pred CEEEECCCCChhhce---eccCC-----------CCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHH
Confidence 788877775544321 11110 12222 23432221 11 234554455 4555 788999999
Q ss_pred HHHhcCCCeE-----eeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022237 151 LFLSMGKNTI-----YCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 204 (300)
Q Consensus 151 ll~~lg~~~~-----~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 204 (300)
+++.+|.... .+.+ .... ...- +..+..+...++..++....++|.+|+..+
T Consensus 168 l~~aiG~~~~g~~~ttf~~e~~~d-l~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 168 YAKGIGGTRAGVIETTFKEETETD-LFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHHcCCCccceeeeeeccccccc-chhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999998754 1211 1011 0000 222333444677777888999999988743
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=90.57 Aligned_cols=246 Identities=13% Similarity=0.149 Sum_probs=139.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+.+|..|+++||+|++|+|+ ++.+.+.+.|.. ...++++ ....|+||+||+.. ++++++..
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l~~ 78 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAAAL 78 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHHHH
Confidence 7999999999999999999997 667777765521 1123344 56899999999887 77888776
Q ss_pred CCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCC--hHhhhcCceEEEecc-C-
Q 022237 67 PNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMVGG-S- 141 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~--~~~~~~g~~~~~~~g-~- 141 (300)
+.+.+. ++++|+-..+ .... +.+.+.+... ..+.++.+..+-..++ ......+. +.+|. +
T Consensus 79 l~~~l~-----~~~~iv~~qNG~g~~--~~l~~~~~~~------~v~~g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~~ 143 (293)
T TIGR00745 79 LLPLIG-----KNTKVLFLQNGLGHE--ERLRELLPAR------RILGGVVTHGAVREEPGVVHHAGLGA--TKIGDYVG 143 (293)
T ss_pred hHhhcC-----CCCEEEEccCCCCCH--HHHHHHhCcc------CEEEEEEEEeeEEcCCcEEEEecccc--EEEecCCC
Confidence 555542 2245554443 3322 3344433221 0000111222111111 11111222 23343 2
Q ss_pred -HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCC
Q 022237 142 -EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSLGIS 199 (300)
Q Consensus 142 -~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~---------------------~~~~~~~~~Ea~~l~~~~Gi~ 199 (300)
.+..+.+.++|+..+..+....++-...-.|++.|.. ......++.|+..++++.|++
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 144 ENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVD 223 (293)
T ss_pred chHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCC
Confidence 2445667777777776666656666666777665542 233556789999999999965
Q ss_pred --HHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 200 --ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 200 --~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
.+.+.+.+..-...+. . ..+.+.+ |+..+-.. +...=...+++.++++|+++|..+.++++++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~--~---~~sSm~~------D~~~gr~t-Eid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 224 LPDDEVEELVRAVIRMTA--E---NTSSMLQ------DLLRGRRT-EIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred CCHHHHHHHHHHHHhcCC--C---CCChHHH------HHHcCCcc-hHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 3334444332110000 0 0111221 22111111 122224778899999999999999999988654
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=107.46 Aligned_cols=179 Identities=17% Similarity=0.169 Sum_probs=118.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..||..++.+|++|++||++++.+++..+ .| +..+.+. +.+++||+||-+||.
T Consensus 346 MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEAv~E 424 (737)
T TIGR02441 346 MGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKNADMVIEAVFE 424 (737)
T ss_pred hHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhccCCeehhhccc
Confidence 8999999999999999999999987654322 11 3334455 467899999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++.- +.+++.++ +++.|+. ++|+.++. ++++.+.+ +.++.+.||+.+|..-.......+.
T Consensus 425 ~l~~K~~vf~~l~~~~-----~~~~ilasNTSsl~i~---~la~~~~~------p~r~ig~Hff~P~~~m~LvEvv~g~- 489 (737)
T TIGR02441 425 DLSLKHKVIKEVEAVV-----PPHCIIASNTSALPIK---DIAAVSSR------PEKVIGMHYFSPVDKMQLLEIITHD- 489 (737)
T ss_pred cHHHHHHHHHHHHhhC-----CCCcEEEEcCCCCCHH---HHHhhcCC------ccceEEEeccCCcccCceEEEeCCC-
Confidence 9887664 44444443 3334443 44444444 55555542 3445557777654333221111111
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
..+++.++.+..+++.+|+.++.+++ ..+.....+.. ..+.|++.+.++ |++++++..++.
T Consensus 490 ----~Ts~~~~~~~~~~~~~lgk~pv~v~d-~pGFi~NRi~~-------~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 490 ----GTSKDTLASAVAVGLKQGKVVIVVKD-GPGFYTTRCLG-------PMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred ----CCCHHHHHHHHHHHHHCCCeEEEECC-cCCchHHHHHH-------HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 23788999999999999999998876 44444433332 556899888866 789999988753
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=104.94 Aligned_cols=179 Identities=17% Similarity=0.116 Sum_probs=117.5
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHH-----------hCC-------------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~adiVii~vp 55 (300)
||..||..++ ++|++|++||++++.++... +.| +..+++. +.+++||+||-|+|
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~adlViEav~ 393 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKDVDIVIEAVF 393 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhccCCEEEEecc
Confidence 8999999998 58999999999998654431 111 2334455 56799999999999
Q ss_pred Chhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 56 SSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 56 ~~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
.+.+++. ++.+++.+. ++++|+. ++|+.++. ++++.+.. +.++.+.||+.+|-.........+.
T Consensus 394 E~l~~K~~v~~~l~~~~-----~~~~ilasnTS~l~i~---~la~~~~~------p~r~~g~HffnP~~~~~lVEvv~g~ 459 (699)
T TIGR02440 394 EDLALKHQMVKDIEQEC-----AAHTIFASNTSSLPIG---QIAAAASR------PENVIGLHYFSPVEKMPLVEVIPHA 459 (699)
T ss_pred ccHHHHHHHHHHHHhhC-----CCCcEEEeCCCCCCHH---HHHHhcCC------cccEEEEecCCccccCceEEEeCCC
Confidence 9988765 444444443 2333443 33344433 55555432 3445557777755433322211111
Q ss_pred eEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 134 LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 134 ~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
..+++.++.+..+++.+|+.++.+.+ ..+.....+.- ..++|++.+.++ |++++++..++.
T Consensus 460 -----~T~~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~nRl~~-------~~~~Ea~~l~~~-G~~~~dID~a~~ 520 (699)
T TIGR02440 460 -----GTSEQTIATTVALAKKQGKTPIVVAD-KAGFYVNRILA-------PYMNEAARLLLE-GEPVEHIDKALV 520 (699)
T ss_pred -----CCCHHHHHHHHHHHHHcCCeEEEEcc-ccchHHHHHHH-------HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 23789999999999999999999865 34444443333 556899888875 689999988874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-09 Score=105.38 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=117.6
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHH-----------hCC-------------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~adiVii~vp 55 (300)
||..||..++ .+|++|+++|++++.++... +.| +..+++. +++++||+||-|+|
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 398 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKHADVVIEAVF 398 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhccCCEEeeccc
Confidence 8999999999 88999999999988654431 111 2334454 56799999999999
Q ss_pred Chhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 56 SSSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 56 ~~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
.+..++.- +.+++..+ ++++++. ++|+.++. ++++.+.. +.++.+.||+.+|-.........+.
T Consensus 399 E~~~~K~~v~~~le~~~-----~~~~ilasnTS~l~i~---~la~~~~~------p~r~ig~Hff~P~~~~~lVEvv~g~ 464 (708)
T PRK11154 399 EDLALKQQMVAEVEQNC-----APHTIFASNTSSLPIG---QIAAAAAR------PEQVIGLHYFSPVEKMPLVEVIPHA 464 (708)
T ss_pred ccHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHHhcCc------ccceEEEecCCccccCceEEEECCC
Confidence 99887654 43334333 3334444 33333333 55554432 3445567777655433222111111
Q ss_pred eEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 134 LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 134 ~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
..+++.++.+..+++.+|+.++.+.+ ..+.....+.- ..++|++.+.++ |++++++..++.
T Consensus 465 -----~Ts~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~nRl~~-------~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 465 -----KTSAETIATTVALAKKQGKTPIVVRD-GAGFYVNRILA-------PYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred -----CCCHHHHHHHHHHHHHcCCceEEEec-cCcHHHHHHHH-------HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 23789999999999999999998865 44555544433 455899988887 789999877765
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-08 Score=88.73 Aligned_cols=250 Identities=12% Similarity=0.057 Sum_probs=140.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------------CCCHHHHhhcCCEEEEecCChhhhhhhhcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------------KETPFEVAEASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------------~~~~~e~~~~adiVii~vp~~~~~~~v~~~~ 67 (300)
||+.+|..|+++||+|++|.|++. +.+...|... ..+..+....+|+||+||+.. ++.+++..+
T Consensus 16 iG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~~~~~~~l 92 (313)
T PRK06249 16 IGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT-ANALLAPLI 92 (313)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-ChHhHHHHH
Confidence 699999999999999999999863 3444443211 111223457899999999887 667777655
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCCh--HhhhcCceEEE-ecc-C--
Q 022237 68 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV--LAAEAGTLTFM-VGG-S-- 141 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~--~~~~~g~~~~~-~~g-~-- 141 (300)
.+.+. +. .+|+..-+.- ...+.+.+.+.+.. .+.++.++.+...++. .....|.+.+- ..+ +
T Consensus 93 ~~~~~----~~-~~iv~lqNG~-~~~e~l~~~~~~~~------v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~ 160 (313)
T PRK06249 93 PQVAA----PD-AKVLLLQNGL-GVEEQLREILPAEH------LLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAAD 160 (313)
T ss_pred hhhcC----CC-CEEEEecCCC-CcHHHHHHHCCCCc------EEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCccc
Confidence 44442 22 3454433322 22234444443210 0111233333222211 11222332221 122 2
Q ss_pred ---HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcC
Q 022237 142 ---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLG 197 (300)
Q Consensus 142 ---~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~G 197 (300)
.+..+.+.++|+..|..+....++....-.|++.|... ......+.|+.+++++.|
T Consensus 161 ~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G 240 (313)
T PRK06249 161 DGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACG 240 (313)
T ss_pred chHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcC
Confidence 35567788888888877776677777777777766432 235567899999999999
Q ss_pred CCH--HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022237 198 ISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 198 i~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~ 275 (300)
++. +.+.+++......+ . ..+.|.+ |+..+... +...=...++++++++|+++|..+.++.+++.
T Consensus 241 i~~~~~~~~~~~~~~~~~~---~---~~sSM~q------D~~~gr~t-Eid~i~G~vv~~a~~~Gi~~P~~~~l~~~l~~ 307 (313)
T PRK06249 241 HTLPEGYADHMLAVTERMP---D---YRPSMYH------DFEEGRPL-ELEAIYANPLAAARAAGCAMPRVEMLYQALEF 307 (313)
T ss_pred CCCChhHHHHHHHHhhcCC---C---CCChHHH------HHHCCCcc-cHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 762 22222222111000 0 1122222 22221111 11122478899999999999999999988776
Q ss_pred HHH
Q 022237 276 LCE 278 (300)
Q Consensus 276 a~~ 278 (300)
...
T Consensus 308 ~e~ 310 (313)
T PRK06249 308 LDR 310 (313)
T ss_pred HHh
Confidence 543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-10 Score=94.54 Aligned_cols=141 Identities=16% Similarity=0.274 Sum_probs=86.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------C-------------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..+|..++.+|++|.+||++++.++...+ . .+...++++++. +||+||-|+|.
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E 88 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DADLVIEAIPE 88 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-S
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hhheehhhccc
Confidence 8999999999999999999999987644322 1 234567888877 99999999999
Q ss_pred hhhhhhh-hcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~v-~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+..++.- +.+++... +++.++. ++|+.+ ..++++.+.+ +.++.+.||+.+|.......
T Consensus 89 ~l~~K~~~~~~l~~~~-----~~~~ilasnTSsl~---i~~la~~~~~------p~R~ig~Hf~~P~~~~~lVE------ 148 (180)
T PF02737_consen 89 DLELKQELFAELDEIC-----PPDTILASNTSSLS---ISELAAALSR------PERFIGMHFFNPPHLMPLVE------ 148 (180)
T ss_dssp SHHHHHHHHHHHHCCS------TTSEEEE--SSS----HHHHHTTSST------GGGEEEEEE-SSTTT--EEE------
T ss_pred cHHHHHHHHHHHHHHh-----CCCceEEecCCCCC---HHHHHhccCc------CceEEEEecccccccCceEE------
Confidence 9877654 43334333 3334444 333333 3355554432 33445577776543222111
Q ss_pred EEEe--ccCHHHHHHHHHHHHhcCCCeEeeC
Q 022237 135 TFMV--GGSEDAYQAAKPLFLSMGKNTIYCG 163 (300)
Q Consensus 135 ~~~~--~g~~~~~~~~~~ll~~lg~~~~~~g 163 (300)
++. ..+++.++.+..+++.+|+.++.+.
T Consensus 149 -vv~~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 149 -VVPGPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp -EEE-TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred -EeCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 222 2378999999999999999988764
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-10 Score=92.26 Aligned_cols=131 Identities=17% Similarity=0.244 Sum_probs=85.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+++|..|+++||+|++|.|+++.++.+.+.+ ...+++++++++++|+|+++||.. ..++++.+
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~-~~~~~~~~ 88 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ-AHREVLEQ 88 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG-GHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH-HHHHHHHH
Confidence 699999999999999999999999998887642 335678899999999999999997 88999987
Q ss_pred CCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 143 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~ 143 (300)
+...+. +++++|.++. ..+.+...+.+.+.+. .+. ..+.++.+|.+..+......+..++.+.|.+
T Consensus 89 l~~~l~-----~~~~ii~~~KG~~~~~~~~~~~~i~~~-----~~~-~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 89 LAPYLK-----KGQIIISATKGFEPGTLLLLSEVIEEI-----LPI-PRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp HTTTSH-----TT-EEEETS-SEETTEEEEHHHHHHHH-----HSS-CGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HhhccC-----CCCEEEEecCCcccCCCccHHHHHHHH-----hhh-cceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 666653 3466676553 3343333344443321 000 0167788888877666665665566666654
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=9e-10 Score=84.78 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=61.6
Q ss_pred ChHHHHHHHHhCCCeEEE-EcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~-~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
+|.+|++.|.++||+|.. |+|+++..+++.+. +.....++.|+++++|++||+|||+ ++.++..++...- ...+
T Consensus 21 VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~La~~~---~~~~ 96 (127)
T PF10727_consen 21 VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQLAQYG---AWRP 96 (127)
T ss_dssp CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHHHHCC-----S-T
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHHHHHhc---cCCC
Confidence 478999999999999875 59999888777665 4445567788999999999999998 8888887643321 1346
Q ss_pred CeEEEEcCCCCHHHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISA 98 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~ 98 (300)
+++|++||+..+....+-.+
T Consensus 97 g~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 97 GQIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp T-EEEES-SS--GGGGHHHH
T ss_pred CcEEEECCCCChHHhhhhHH
Confidence 79999999988876655443
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=89.30 Aligned_cols=183 Identities=17% Similarity=0.111 Sum_probs=115.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.++|++|.++|++|+++++ ++++.+.+.+.|+.. .++.++++++|+|++++|+..+...+..++.+.+ .++
T Consensus 14 mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l-----~~g 87 (314)
T TIGR00465 14 QGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLL-----KEG 87 (314)
T ss_pred HHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhC-----CCC
Confidence 799999999999999887654 455667776777765 4688899999999999998745554543333222 234
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCce-EEEeccCCCh-H----hhhcCceEEE-ecc--CHHHHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGV-L----AAEAGTLTFM-VGG--SEDAYQAAKP 150 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pv~g~~-~----~~~~g~~~~~-~~g--~~~~~~~~~~ 150 (300)
++|.-+.+..... +...++. +.. +..+|-..+. . ....|...++ +.. +.+..+.+..
T Consensus 88 ~iVs~aaG~~i~~---~~~~~~~-----------~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~ 153 (314)
T TIGR00465 88 KTLGFSHGFNIHF---VQIVPPK-----------DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALA 153 (314)
T ss_pred cEEEEeCCccHhh---ccccCCC-----------CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHH
Confidence 5555555554332 2222221 122 2234433222 1 0134554443 333 5678899999
Q ss_pred HHHhcCCC-------eE--eeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 151 LFLSMGKN-------TI--YCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 151 ll~~lg~~-------~~--~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
+++.+|.. .+ .+.+ .+...++.-+...+++..+ |++ .+.|++++..+......
T Consensus 154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~----eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 154 YAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGF----DTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHH----HHH---HHcCCCHHHHHHHHHHH
Confidence 99999986 32 3322 6666777767777775544 554 68899999988776544
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-09 Score=78.96 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=62.6
Q ss_pred ChHHHHHHHHhCC---CeEEEE-cCChhhHHHHHhC-CCCCCC-CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAG---YKMAVH-DVNCNVMKMFSDM-GVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G---~~V~~~-dr~~~~~~~~~~~-g~~~~~-~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||.+|+++|.++| ++|+++ +|++++.+++.+. +..... +..|+++++|+||+|||.. .+.+++.++ ..
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~~~i-~~---- 83 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVLSEI-PH---- 83 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHHHHH-hh----
Confidence 7999999999999 899955 9999999998655 555555 8999999999999999876 888888764 11
Q ss_pred CCCCCeEEEEcCC
Q 022237 75 NSVRPQLLIDSST 87 (300)
Q Consensus 75 ~~~~~~ivid~st 87 (300)
..+++++|+++.
T Consensus 84 -~~~~~~vis~~a 95 (96)
T PF03807_consen 84 -LLKGKLVISIAA 95 (96)
T ss_dssp -HHTTSEEEEEST
T ss_pred -ccCCCEEEEeCC
Confidence 234489998653
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-07 Score=68.80 Aligned_cols=93 Identities=23% Similarity=0.242 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 245 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (300)
..|+.+|+..|.+.+..++.++|...+|++.|+|..++.++++.....+ .....| .++|...+.
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~--~~~~~p--------------g~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG--PHYLRP--------------GPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT--SSS-S---------------SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc--cccCCC--------------CCCCCCcch
Confidence 4689999999999999999999999999999999999999998764211 001111 235667799
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022237 246 AKDLNLALASAKEVGVDCPLTSQAQDIYA 274 (300)
Q Consensus 246 ~kd~~~~~~~a~~~g~~~~~~~~~~~~~~ 274 (300)
.||...+...+++.|.+.++++++.+.-+
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999998876543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.8e-08 Score=79.47 Aligned_cols=186 Identities=13% Similarity=0.186 Sum_probs=122.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----------------------------CCCCCCCHHHHhhcCCEEE
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------------------------GVPTKETPFEVAEASDVVI 51 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----------------------------g~~~~~~~~e~~~~adiVi 51 (300)
||+.||+.-+.+||+|+++|+|++.+.+..+. .++.+++..+++.++|+||
T Consensus 22 MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadlii 101 (298)
T KOG2304|consen 22 MGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLII 101 (298)
T ss_pred cchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHH
Confidence 89999999999999999999999876554331 1345667788899999999
Q ss_pred EecCChhhhhhhhc-CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEec-cCCChHhh
Q 022237 52 TMLPSSSHVLDVYN-GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP-VSGGVLAA 129 (300)
Q Consensus 52 i~vp~~~~~~~v~~-~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-v~g~~~~~ 129 (300)
-++-....++.-++ .++.. .++..++. |+++.-....++..+++ ..++.|.||+.++ +.- ....
T Consensus 102 EAivEn~diK~~lF~~l~~~-----ak~~~il~--tNTSSl~lt~ia~~~~~------~srf~GlHFfNPvPvMK-LvEV 167 (298)
T KOG2304|consen 102 EAIVENLDIKRKLFKDLDKI-----AKSSTILA--TNTSSLSLTDIASATQR------PSRFAGLHFFNPVPVMK-LVEV 167 (298)
T ss_pred HHHHHhHHHHHHHHHHHHhh-----cccceEEe--ecccceeHHHHHhhccC------hhhhceeeccCCchhHH-Hhhh
Confidence 98877766654433 22222 23334443 44443334455555543 3445567887743 221 1111
Q ss_pred hcCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 130 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 130 ~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
.+.. -..++.+..+..+-+.+|+.++.+-+ -.+..+. -++ +-.+.|++++.++...+.+++..++..
T Consensus 168 ir~~-----~TS~eTf~~l~~f~k~~gKttVackD-tpGFIVN---RlL----iPyl~ea~r~yerGdAskeDIDtaMkl 234 (298)
T KOG2304|consen 168 IRTD-----DTSDETFNALVDFGKAVGKTTVACKD-TPGFIVN---RLL----IPYLMEAIRMYERGDASKEDIDTAMKL 234 (298)
T ss_pred hcCC-----CCCHHHHHHHHHHHHHhCCCceeecC-CCchhhh---HHH----HHHHHHHHHHHHhcCCcHhhHHHHHhc
Confidence 1111 22578889999999999999887765 2233332 222 356689999999999999999999988
Q ss_pred cCCC
Q 022237 210 SSAR 213 (300)
Q Consensus 210 ~~~~ 213 (300)
+.+.
T Consensus 235 Gagy 238 (298)
T KOG2304|consen 235 GAGY 238 (298)
T ss_pred cCCC
Confidence 8754
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-06 Score=71.00 Aligned_cols=187 Identities=19% Similarity=0.237 Sum_probs=120.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-----~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|..||..|+++||+|.+.+.|.+ ..+++...|+..+++..++++.+++.++-+|-....-.+..+ +++. .
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iare---i~~h--v 107 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIARE---ILEH--V 107 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHHHH---HHhh--C
Confidence 77899999999999999987654 456677779999999999999999999999998665556544 3333 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHH-HHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCceEEEec--------cCHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISA-AVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVG--------GSEDAYQ 146 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~~~~~~~--------g~~~~~~ 146 (300)
+.|.+|.+++|++|...-.-.+ .++.. +. ..|+..+. +.+.|.|.. +- .+..| ..++..+
T Consensus 108 pEgAVicnTCT~sp~vLy~~LE~~Lr~k----R~--dVGvssmHPAgvPGtp~h---~~-yviagr~t~g~elATeEQi~ 177 (340)
T COG4007 108 PEGAVICNTCTVSPVVLYYSLEGELRTK----RE--DVGVSSMHPAGVPGTPQH---GH-YVIAGRSTEGKELATEEQIE 177 (340)
T ss_pred cCCcEecccccCchhHHHHHhhhhhcCc----hh--hcCccccCCCCCCCCCCC---ce-EEEeccCCCceeeccHHHHH
Confidence 6778999999999875433222 22210 00 01122111 124444332 22 22221 1467779
Q ss_pred HHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Q 022237 147 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLT 204 (300)
Q Consensus 147 ~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~ 204 (300)
++.++.++.|+.++.+.. .--+++.=....+.+..+.++.+-+..+.+ .|.+.+.+-
T Consensus 178 r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIe 235 (340)
T COG4007 178 RCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIE 235 (340)
T ss_pred HHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 999999999998877653 333333333445555666777777666653 566655443
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=78.54 Aligned_cols=255 Identities=15% Similarity=0.070 Sum_probs=137.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCC-----------CCHHHHhhcCCEEEEecCChhhhhhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK-----------ETPFEVAEASDVVITMLPSSSHVLDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~-----------~~~~e~~~~adiVii~vp~~~~~~~v~~~~~ 68 (300)
||+-+|..|+++|++|++++|++++++.+.+. |.... ....+.....|+||+||... ++.+++..+.
T Consensus 13 iG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-~~~~al~~l~ 91 (305)
T PRK05708 13 LGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-DAEPAVASLA 91 (305)
T ss_pred HHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-hHHHHHHHHH
Confidence 68999999999999999999998888888754 32110 01112235689999999665 6777776554
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh-cCceEEEecc-CHHHHH
Q 022237 69 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGG-SEDAYQ 146 (300)
Q Consensus 69 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~-~g~~~~~~~g-~~~~~~ 146 (300)
..+. +...++.-..++... +.+.+.+.... -+.+..++.+...+ |.... .+...+.+|. +.+..+
T Consensus 92 ~~l~----~~t~vv~lQNGv~~~--e~l~~~~~~~~------v~~g~~~~ga~~~~-pg~v~~~~~g~~~~G~~~~~~~~ 158 (305)
T PRK05708 92 HRLA----PGAELLLLQNGLGSQ--DAVAARVPHAR------CIFASSTEGAFRDG-DWRVVFAGHGFTWLGDPRNPTAP 158 (305)
T ss_pred hhCC----CCCEEEEEeCCCCCH--HHHHHhCCCCc------EEEEEeeeceecCC-CCEEEEeceEEEEEcCCCCcchH
Confidence 4442 222333444444432 23333332210 00011222211111 11001 1111223442 233456
Q ss_pred HHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--HHHHHHH
Q 022237 147 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------------VSMLGVSEALTLGQSLGIS--ASTLTKI 206 (300)
Q Consensus 147 ~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~------------------~~~~~~~Ea~~l~~~~Gi~--~~~~~~~ 206 (300)
++.++|..-|..+....++....-.|++.|.... .....+.|+..++++.|++ .+.+.+.
T Consensus 159 ~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~~ 238 (305)
T PRK05708 159 AWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHEE 238 (305)
T ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 6777777767655555557777777777665321 2456789999999999975 2323333
Q ss_pred HHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-cCC
Q 022237 207 LNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE-NGH 281 (300)
Q Consensus 207 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~-~g~ 281 (300)
+..-.... ..+ .+.|.++....|..+- ..=...+.++++++|+++|..+.+++++..... .|.
T Consensus 239 ~~~~~~~~--~~~---~sSM~qD~~~gR~tEi-------d~i~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~~~~ 302 (305)
T PRK05708 239 VQRVIQAT--AAN---YSSMYQDVRAGRRTEI-------SYLLGYACRAADRHGLPLPRLQHLQQRLVAHLRARGL 302 (305)
T ss_pred HHHHHHhc--cCC---CcHHHHHHHcCCceee-------hhhhhHHHHHHHHcCCCCchHHHHHHHHHHHHHhcCC
Confidence 32110000 000 1112221111111110 011478899999999999999999987766554 444
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=75.57 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=67.7
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CC----CCCCCHHHHhhcCCEEEEecCChhh-hhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GV----PTKETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~----~~~~~~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~l~~ 73 (300)
||.++++.|.+.| ++|++|||++++.+++.+. +. ....+..+.++++|+||+|+|.+.. ++.+..... .
T Consensus 30 ~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~----~ 105 (155)
T cd01065 30 AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLPPS----L 105 (155)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCCCCCHH----H
Confidence 6899999999986 7899999999988876554 32 2345677778999999999999854 333322111 1
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 74 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.+++++++|+++.++.+ .+.+.+++
T Consensus 106 --~~~~~~v~D~~~~~~~~--~l~~~~~~ 130 (155)
T cd01065 106 --LKPGGVVYDVVYNPLET--PLLKEARA 130 (155)
T ss_pred --cCCCCEEEEcCcCCCCC--HHHHHHHH
Confidence 24568999999986654 66666654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.3e-06 Score=73.50 Aligned_cols=252 Identities=14% Similarity=0.180 Sum_probs=146.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP------------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~ 68 (300)
||+-++..|+++|++|+++.|++. ++++.+.|.. ......+....+|+||++|... ++++++..+.
T Consensus 11 vG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q~~~al~~l~ 88 (307)
T COG1893 11 IGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-QLEEALPSLA 88 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-cHHHHHHHhh
Confidence 799999999999999999999987 8888876532 1122235556899999999665 8888887665
Q ss_pred CcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCC--ChHhhhcCceEE--EeccCHH
Q 022237 69 GLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLTF--MVGGSED 143 (300)
Q Consensus 69 ~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g--~~~~~~~g~~~~--~~~g~~~ 143 (300)
+.+. +.+.|+ -..+..-.+ .+.+..... ..+.|+.+..+--.+ .......|...+ +.+++++
T Consensus 89 ~~~~-----~~t~vl~lqNG~g~~e--~l~~~~~~~------~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~ 155 (307)
T COG1893 89 PLLG-----PNTVVLFLQNGLGHEE--ELRKILPKE------TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDE 155 (307)
T ss_pred hcCC-----CCcEEEEEeCCCcHHH--HHHHhCCcc------eEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchH
Confidence 5553 223333 333444332 555544321 000111111111111 111111122211 2233457
Q ss_pred HHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcC--CCH
Q 022237 144 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLGQSLG--ISA 200 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~---------------------~~~~~~~Ea~~l~~~~G--i~~ 200 (300)
..+.+.++|+.-+..+.+..++-...-.|++.|.-+. .....+.|+...+++.| ++.
T Consensus 156 ~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~ 235 (307)
T COG1893 156 LVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPE 235 (307)
T ss_pred HHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 7888888898888777666667777777766665433 25677889999999999 566
Q ss_pred HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 201 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 201 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
+.+.++.......+ .. ..+.|.+ |...+-. -+.-.=...+++.++++|+++|..+.++++++.....
T Consensus 236 ~~~~~v~~~~~~~~--~~---~~sSM~q------Dl~~gr~-tEid~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 236 EVVERVLAVIRATD--AE---NYSSMLQ------DLEKGRP-TEIDAINGAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHHhcc--cc---cCchHHH------HHHcCCc-ccHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 43333333221100 01 1111222 1111100 0111114778999999999999999999998877654
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.5e-06 Score=71.79 Aligned_cols=180 Identities=16% Similarity=0.127 Sum_probs=102.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|++|...|++|++|+|.....+.....|... .+++|+++.||+|++++|++. .+.++.+ ++++. .++|+
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~-t~~V~~~--eil~~--MK~Ga 100 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ-QAHVYKA--EVEEN--LREGQ 100 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH-HHHHHHH--HHHhc--CCCCC
Confidence 799999999999999999988755555555567754 489999999999999999974 4777752 34443 34556
Q ss_pred EEEEcCC--CCHHHHHHHHHHHhhhhhhhccCCCCCce-EEEec-cCCChHhh----hcCceEEEe-c--cCHHHHHHHH
Q 022237 81 LLIDSST--IDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAP-VSGGVLAA----EAGTLTFMV-G--GSEDAYQAAK 149 (300)
Q Consensus 81 ivid~st--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-v~g~~~~~----~~g~~~~~~-~--g~~~~~~~~~ 149 (300)
+++-+-+ +... ..... .++. ++-+| -.|..... ..|...+++ - .+..+.+.+.
T Consensus 101 iL~f~hgfni~~~------~i~pp----------~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~al 164 (335)
T PRK13403 101 MLLFSHGFNIHFG------QINPP----------SYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVAL 164 (335)
T ss_pred EEEECCCcceecC------ceeCC----------CCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHH
Confidence 6653222 1111 11100 0122 22233 23332221 123333322 1 2345778899
Q ss_pred HHHHhcCCC---eEeeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022237 150 PLFLSMGKN---TIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISASTL 203 (300)
Q Consensus 150 ~ll~~lg~~---~~~~g~~g~a~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~ 203 (300)
.+...+|.. ++.+ ....-.-..+. +..+..+...++.-++....++|.+|+.+
T Consensus 165 a~a~~iG~~ragv~~t-tf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~A 222 (335)
T PRK13403 165 AYAKGVGCTRAGVIET-TFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIA 222 (335)
T ss_pred HHHHHcCCCceeEEec-chHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 999999875 2211 11111111121 12333444455555566677778887764
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=80.69 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=80.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|++|...|.+|.+|||++...+.....|+....+++++++.||+|++++|...+.+.++.+ +.++. .++|.
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~--mk~ga 278 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA--DVLSR--MKRGS 278 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH--HHHhc--CCCCc
Confidence 689999999999999999999874444344456665678999999999999999999898888853 35554 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 279 ~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 279 YLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred EEEECCCCchhhHHHHHHHHHh
Confidence 9999999998888888888875
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=79.67 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=81.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..+|+.|...|.+|.+||+++...+...+.|+....++++++++||+|++++|...+.+.++.. +.++. .++|.
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~--~~l~~--mk~ga 285 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK--ERIAK--MKKGV 285 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH--HHHhh--CCCCe
Confidence 689999999999999999999865444445557666679999999999999999999899888853 35554 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 286 ~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 286 LIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred EEEECCCCchhhHHHHHHHHHc
Confidence 9999999988888888888875
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-05 Score=65.39 Aligned_cols=118 Identities=11% Similarity=0.125 Sum_probs=80.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.++..|.++||.|+ +.+||+||+|+|.. .+.+++.+. . +
T Consensus 12 mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~~i~~~---~--------~ 53 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALNYIESY---D--------N 53 (197)
T ss_pred HHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHHHHHHh---C--------C
Confidence 89999999999999986 36999999999998 666676532 1 3
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcC--ceEEEec--cCHHHHHHHHHHHHhc
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLTFMVG--GSEDAYQAAKPLFLSM 155 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g--~~~~~~~--g~~~~~~~~~~ll~~l 155 (300)
+++|.++++....+. . ..|+ .+|++|... +..+ ...+++. .+++..+.++++++
T Consensus 54 ~v~Dv~SvK~~i~~~-------------~-----~~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~~~~~~~l~~-- 112 (197)
T PRK06444 54 NFVEISSVKWPFKKY-------------S-----GKIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNYLNEINEMFR-- 112 (197)
T ss_pred eEEeccccCHHHHHh-------------c-----CCEEecCCCCCCCc-CcccccceEEEECCCCCHHHHHHHHHHHc--
Confidence 789999999753211 0 2334 368887332 2221 2233342 25567788999998
Q ss_pred CCCeEeeCCccHHHHHHHHHHH
Q 022237 156 GKNTIYCGGAGNGAAAKICNNL 177 (300)
Q Consensus 156 g~~~~~~g~~g~a~~~k~~~n~ 177 (300)
|.+++.+.+-..-..+-.++.+
T Consensus 113 G~~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 113 GYHFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred CCEEEEeCHHHHHHHHHHHHHH
Confidence 7888888775666666655544
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=75.72 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=53.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||..|.++|+.|++|+++.. ++.+.+++||+||+|++.+..++.+. + ++|.
T Consensus 171 vG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~------i-----k~Ga 225 (301)
T PRK14194 171 VGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW------L-----KPGA 225 (301)
T ss_pred cHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh------c-----cCCc
Confidence 899999999999999999987632 78899999999999999997666554 2 3568
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
+|||+|..
T Consensus 226 iVIDvgin 233 (301)
T PRK14194 226 VVIDVGIN 233 (301)
T ss_pred EEEEeccc
Confidence 99999864
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=77.04 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=76.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|++|++|||++.... ....+.. ..++.+++++||+|++++|...+.+.++.. +.++. .+++.
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~--~~~~~--mk~ga 234 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMINE--ERLKL--MKPTA 234 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH--HHHhc--CCCCe
Confidence 699999999999999999999876432 2233443 358999999999999999998888888753 34544 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|.........+.+.+.+
T Consensus 235 ~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 235 ILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred EEEECcCchhcCHHHHHHHHHc
Confidence 9999999998888888888865
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-06 Score=75.65 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=74.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+|+.+...|++|++|||+... .+.. ...++++++++||+|++++|...+.+.++. .+.++. .+++
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~~l~~--mk~g 202 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SKMLSL--FRKG 202 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HHHHhc--CCCC
Confidence 6899999888889999999998532 2332 246899999999999999999988888875 334544 4667
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++||+|...+.....+.+.+.+
T Consensus 203 a~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 203 LAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999999999888888888865
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.9e-06 Score=69.66 Aligned_cols=185 Identities=14% Similarity=0.153 Sum_probs=120.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC--------------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG--------------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g--------------~~~~~~~~e~~~~adiVii~vp 55 (300)
.|+++|.-|+..||+|..||+.++.+... .+.| +..++++.|+++++=.|--|+|
T Consensus 14 ~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvp 93 (313)
T KOG2305|consen 14 VGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVP 93 (313)
T ss_pred ccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhch
Confidence 47899999999999999999998865432 2222 3467789999999999999999
Q ss_pred Chhhhhhh-hcCCCCcccCCCCCCCeEEEEcCCC--CHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcC
Q 022237 56 SSSHVLDV-YNGPNGLLQGGNSVRPQLLIDSSTI--DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 132 (300)
Q Consensus 56 ~~~~~~~v-~~~~~~~l~~~~~~~~~ivid~st~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g 132 (300)
.+-.++.- +.+++++++. ++|+-.||. .|+. -.+....... +.. .|.+.+|.+-+...
T Consensus 94 E~L~lkk~ly~qlD~i~d~------~tIlaSSTSt~mpS~--~s~gL~~k~q--~lv-----aHPvNPPyfiPLvE---- 154 (313)
T KOG2305|consen 94 EDLNLKKQLYKQLDEIADP------TTILASSTSTFMPSK--FSAGLINKEQ--CLV-----AHPVNPPYFIPLVE---- 154 (313)
T ss_pred HhhHHHHHHHHHHHHhcCC------ceEEeccccccChHH--Hhhhhhhhhh--eeE-----ecCCCCCcccchhe----
Confidence 98776543 4444555532 566654543 3432 2222221100 000 23333443332211
Q ss_pred ceEEEec---cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 133 TLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 133 ~~~~~~~---g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
++. ..++..++.+.+.+.+|.+++.....-.+.++..+.. +..+|-.++....++...++..+++.
T Consensus 155 ----lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~-------Ailne~wrLvasGil~v~dvD~VmS~ 223 (313)
T KOG2305|consen 155 ----LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQY-------AILNETWRLVASGILNVNDVDAVMSA 223 (313)
T ss_pred ----eccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccH-------HHHHHHHHHHHccCcchhhHHHHHhc
Confidence 122 2567889999999999988877765455556655554 44599999999989999999888888
Q ss_pred cCCCcc
Q 022237 210 SSARCW 215 (300)
Q Consensus 210 ~~~~s~ 215 (300)
+.|-.+
T Consensus 224 GLG~RY 229 (313)
T KOG2305|consen 224 GLGPRY 229 (313)
T ss_pred CCCcch
Confidence 765443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.7e-06 Score=74.02 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=51.7
Q ss_pred ChHHHHHHHHhCCCeEEEEc-CChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~d-r~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.+||..|.++|+.|++|+ |++ ++++++++||+||+|++.+..++.++ + ++|
T Consensus 170 mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~------l-----k~G 223 (296)
T PRK14188 170 VGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW------I-----KPG 223 (296)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe------e-----cCC
Confidence 89999999999999999995 764 46888999999999999997665543 2 356
Q ss_pred eEEEEcCCCC
Q 022237 80 QLLIDSSTID 89 (300)
Q Consensus 80 ~ivid~st~~ 89 (300)
++|||+++..
T Consensus 224 avVIDvGin~ 233 (296)
T PRK14188 224 ATVIDVGINR 233 (296)
T ss_pred CEEEEcCCcc
Confidence 8999988643
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.3e-06 Score=74.76 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=72.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++||++++..... .....++.+++++||+|++++|...+.+.++. +..++. .+++.
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~l~~--mk~ga 228 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAMFDH--VKKGA 228 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHHHhc--CCCCc
Confidence 69999999999999999999998754332 23446899999999999999999877777764 234443 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-..-.....+.+.+.+
T Consensus 229 vlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 229 ILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred EEEEcCCccccCHHHHHHHHHc
Confidence 9999987776666677777764
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.5e-05 Score=68.64 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=103.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-HhCCCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||.=+|..|.++||.|+++||+. ...+ ...|....+.+.+.+ +..|+|++|+.-- .++.++.... ....+.
T Consensus 63 mGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilatyp----fqrlrr 135 (480)
T KOG2380|consen 63 MGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATYP----FQRLRR 135 (480)
T ss_pred HHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhcC----chhhcc
Confidence 79999999999999999999986 4344 334766777777766 5899999999554 7777775432 111456
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcCc-eEEEe----cc----CHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGT-LTFMV----GG----SEDAYQAA 148 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g~-~~~~~----~g----~~~~~~~~ 148 (300)
|++++|..+++.-....+.+.+++ .+..+ .+|++|+....-..+ +.++. .| .++-+|.+
T Consensus 136 gtlfvdvlSvKefek~lfekYLPk-----------dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~f 204 (480)
T KOG2380|consen 136 GTLFVDVLSVKEFEKELFEKYLPK-----------DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFF 204 (480)
T ss_pred ceeEeeeeecchhHHHHHHHhCcc-----------ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHH
Confidence 799999999988878788887764 24444 468888762221122 23222 23 37888999
Q ss_pred HHHHHhcCCCeEeeC
Q 022237 149 KPLFLSMGKNTIYCG 163 (300)
Q Consensus 149 ~~ll~~lg~~~~~~g 163 (300)
.++|.+.|++.+++.
T Consensus 205 leIf~cegckmVemS 219 (480)
T KOG2380|consen 205 LEIFACEGCKMVEMS 219 (480)
T ss_pred HHHHHhcCCeEEEEE
Confidence 999999999998885
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.3e-06 Score=74.44 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=72.2
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+++|+.|+ ..|.+|++||+++.... ..++....+++++++++|+|++++|.....+.++.. +.++. .+++
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~--~~l~~--mk~g 229 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA--DLFKH--FKKG 229 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH--HHHhc--CCCC
Confidence 6899999994 46889999999876431 123445568999999999999999998666655432 23433 3567
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++||+|.........+.+.+.+
T Consensus 230 ailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 230 AVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred cEEEECCCCcccCHHHHHHHHHh
Confidence 89999999999888888888865
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=61.25 Aligned_cols=243 Identities=14% Similarity=0.174 Sum_probs=150.2
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHH-HHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKM-FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~-~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
|..++++++...|. +++.+-.+...... +...|...+.+..+.++.+|++++++ .+..+..++.+....+
T Consensus 11 ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vls~~~~~~---- 85 (267)
T KOG3124|consen 11 MAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVLSEIKPKV---- 85 (267)
T ss_pred hHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHhhcCcccc----
Confidence 45677777777775 46666554333333 67778877777789999999999999 5558899988765433
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFL 153 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~ 153 (300)
..+++++ |-....+...+.+.+.. ..+++-. +...|.....|...+..+. ..+..+.+++++.
T Consensus 86 -~~~~iiv--S~aaG~tl~~l~~~l~~-----------~~rviRv-mpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~ 150 (267)
T KOG3124|consen 86 -SKGKIIV--SVAAGKTLSSLESKLSP-----------PTRVIRV-MPNTPSVVGEGASVYAIGCHATNEDLELVEELLS 150 (267)
T ss_pred -ccceEEE--EEeecccHHHHHHhcCC-----------CCceEEe-cCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHH
Confidence 2346777 33333444444444431 1233331 3444555556663333333 3456689999999
Q ss_pred hcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCC
Q 022237 154 SMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~ 230 (300)
..|... .+.+ ++....+.-...+|.+..+.++.+. +.+.|++++..+++-.+.. |..-+......=|+.++
T Consensus 151 ~vG~~~-evpE~~iDavTgLsGSgPAy~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lk-- 224 (267)
T KOG3124|consen 151 AVGLCE-EVPEKCIDAVTGLSGSGPAYVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLK-- 224 (267)
T ss_pred hcCcce-eCcHHhhhHHhhccCCcHHHHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHh--
Confidence 999744 4443 7777888888899998888888888 8899999999988776653 21111111111122222
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 231 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 231 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
..-..|+-+ .-+.....++-|++.-++.++.+-=.++.+
T Consensus 225 --d~V~SPgG~-------TI~glh~LE~ggfRs~linaVeaa~~r~~e 263 (267)
T KOG3124|consen 225 --DDVCSPGGT-------TIYGLHALEKGGFRSGLINAVEAATKRARE 263 (267)
T ss_pred --CCCCCCCcc-------hHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 222345333 234455667778887777777665555544
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.7e-06 Score=67.17 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=73.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++|||++.........+. ...+++|++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~--~~l~~--mk~ga 121 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLINA--EFLAK--MKPGA 121 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSH--HHHHT--STTTE
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeeee--eeeec--cccce
Confidence 5899999999999999999999987765666665 4459999999999999999977677766653 34443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++-...-.-..+.+.+.+
T Consensus 122 ~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 122 VLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp EEEESSSGGGB-HHHHHHHHHT
T ss_pred EEEeccchhhhhhhHHHHHHhh
Confidence 9999887776666677777765
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=71.87 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=72.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..+|+.|...|++|++||+++++...+.. .....++++++++||+|++++|...+.+.++.+ +.+.. .++|.
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~--~~l~~--mk~ga 220 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIINQ--QLLEQ--LPDGA 220 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhHH--HHHhc--CCCCc
Confidence 6899999999999999999998765322211 112357899999999999999999888888753 34544 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++-...-.-..+.+.+.+
T Consensus 221 ~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 221 YLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred EEEECCCccccCHHHHHHHHhc
Confidence 9999987766666677777764
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=75.88 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=76.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|.+|++||++... +...+.|+....++++++++||+|++++|...+.+.++.. +.++. .+++.
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~--mk~ga 223 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGA--EELAK--MKKGV 223 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH--HHHhc--CCCCe
Confidence 6899999999999999999986322 2233446655568999999999999999998888888742 34544 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 224 ~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 224 IIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred EEEEcCCCceeCHHHHHHHHHc
Confidence 9999999888888888888765
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.3e-05 Score=75.18 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=76.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|++|++||++... +.....|+... ++++++++||+|++++|...+.+.++.. +.++. .+++.
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~--~~l~~--mk~ga 224 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGA--EELAK--MKPGV 224 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCH--HHHhc--CCCCe
Confidence 6899999999999999999996432 23334466554 8999999999999999999888888752 34544 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 225 ~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 225 RIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred EEEECCCCceeCHHHHHHHHhc
Confidence 9999999888888888888765
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.5e-05 Score=68.07 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=63.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||.++|+.|...|.+|+++||++++...+.+.|.... .++.+.++++|+||.++|....-++.+ +. .++
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l-------~~--~k~ 232 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVL-------SK--LPK 232 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHH-------hc--CCC
Confidence 6899999999999999999999998877776665433 356778899999999998762222222 22 245
Q ss_pred CeEEEEcCCCCHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRN 95 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~ 95 (300)
+.++||+++....+-.+
T Consensus 233 ~aliIDlas~Pg~tdf~ 249 (287)
T TIGR02853 233 HAVIIDLASKPGGTDFE 249 (287)
T ss_pred CeEEEEeCcCCCCCCHH
Confidence 58999999876554333
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00051 Score=57.39 Aligned_cols=177 Identities=12% Similarity=0.048 Sum_probs=111.5
Q ss_pred HHHH-HHhCCCeEE----EEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 5 MASN-LMKAGYKMA----VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 5 la~~-l~~~G~~V~----~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
+++. |.++-|.++ +-.|++++++.+.+.-.....+.+...+-.+++|.-+|+. .+..+... .+ ..++
T Consensus 21 l~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~vaa~---~~----~rpg 92 (289)
T COG5495 21 LGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVAAT---SL----NRPG 92 (289)
T ss_pred HHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHHHh---cc----cCCC
Confidence 4444 445555443 3378888888876653333334445556778999999887 44444321 22 4567
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEec--cC-CChHhhh--cCceEEEeccCHHHHHHHHHHHHh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP--VS-GGVLAAE--AGTLTFMVGGSEDAYQAAKPLFLS 154 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--v~-g~~~~~~--~g~~~~~~~g~~~~~~~~~~ll~~ 154 (300)
+++++||+........- +.+. |- +-..-+| .| |.+.... +++......+|+.-...++.+...
T Consensus 93 ~iv~HcSga~~~~il~~---~gr~------g~---~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~e 160 (289)
T COG5495 93 TIVAHCSGANGSGILAP---LGRQ------GC---IPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALE 160 (289)
T ss_pred eEEEEccCCCchhhhhh---hhhc------CC---cceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHH
Confidence 99999999776544332 2221 10 0011122 23 3333333 455444457788888899999999
Q ss_pred cCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022237 155 MGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 202 (300)
Q Consensus 155 lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~ 202 (300)
+|.++|.+-+ +.-.......|......+..+.++..+.+.+|.|.-+
T Consensus 161 mgg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e 207 (289)
T COG5495 161 MGGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPE 207 (289)
T ss_pred hCCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcc
Confidence 9999998876 6655666666666666668999999999999988543
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.7e-05 Score=66.07 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=51.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||..|.++|+.|++|+.. +.++++.+++||+||.+++.+..++..+ .++|.
T Consensus 170 vG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~-----------ik~Ga 224 (284)
T PRK14179 170 VGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF-----------VKEGA 224 (284)
T ss_pred CcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH-----------ccCCc
Confidence 8999999999999999999321 1368889999999999999997665543 24568
Q ss_pred EEEEcCCCC
Q 022237 81 LLIDSSTID 89 (300)
Q Consensus 81 ivid~st~~ 89 (300)
+|||++...
T Consensus 225 vVIDvgin~ 233 (284)
T PRK14179 225 VVIDVGMNR 233 (284)
T ss_pred EEEEeccee
Confidence 999988643
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.1e-05 Score=69.47 Aligned_cols=90 Identities=9% Similarity=-0.024 Sum_probs=64.0
Q ss_pred ChHHHHHHHHh--CCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~--~G~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..+++.+.. ...+|++|||++++++.+.+. | +..+.+++++++++|+|+.|+|.+ +.++.. +.
T Consensus 136 ~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pvl~~--~~-- 208 (314)
T PRK06141 136 LASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPLVRG--EW-- 208 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCEecH--HH--
Confidence 57778775554 346899999999998887664 4 445678899999999998888765 344432 12
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
.++|+ +|++++..+...+++...+.
T Consensus 209 ---l~~g~-~i~~ig~~~~~~~El~~~~~ 233 (314)
T PRK06141 209 ---LKPGT-HLDLVGNFTPDMRECDDEAI 233 (314)
T ss_pred ---cCCCC-EEEeeCCCCcccccCCHHHH
Confidence 23444 78888888777777765543
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=66.60 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=71.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH------------HhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF------------SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~------------~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~ 68 (300)
||..+|+.|...|.+|++|||+..+.... ...+. ...++++++++||+|++++|...+.+.++..
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~-- 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVND-- 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCH--
Confidence 68999999999999999999984322111 11112 3468999999999999999988788777753
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 69 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 69 ~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..++. .++|.++||++-...-....+.+.+.+
T Consensus 247 ~~l~~--Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 247 EFLSS--MKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred HHHhc--CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 34544 467799999987666666667776654
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.7e-05 Score=59.01 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=52.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc-CCCCcccCCCCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-GPNGLLQGGNSVRP 79 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~-~~~~~l~~~~~~~~ 79 (300)
|.+.|.+|..+|++|++..|..+ ..++..+.|... .+..|+++.+|+|++.+||. ...+++. ++.+.+ ++|
T Consensus 16 G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~-~q~~vy~~~I~p~l-----~~G 88 (165)
T PF07991_consen 16 GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDE-VQPEVYEEEIAPNL-----KPG 88 (165)
T ss_dssp HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HH-HHHHHHHHHHHHHS------TT
T ss_pred HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChH-HHHHHHHHHHHhhC-----CCC
Confidence 78899999999999999988866 777888888776 48899999999999999997 5566763 223333 455
Q ss_pred eEEEE
Q 022237 80 QLLID 84 (300)
Q Consensus 80 ~ivid 84 (300)
++++=
T Consensus 89 ~~L~f 93 (165)
T PF07991_consen 89 ATLVF 93 (165)
T ss_dssp -EEEE
T ss_pred CEEEe
Confidence 66664
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00014 Score=66.55 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=69.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChh----hhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS----HVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~----~~~~v~~~~~~~l~~~~~ 76 (300)
||+.+|+.+...|++|++||+..... .+.....++++++++||+|++++|... ....++.+ ..+.. .
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~--~~l~~--m 197 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE--AFLAS--L 197 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCH--HHHhc--C
Confidence 68999999999999999999864321 122334689999999999999999764 24444432 24443 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|.++||+|.........+.+.+.+
T Consensus 198 k~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 198 RPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 67799999999888888888887764
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00026 Score=62.12 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=65.8
Q ss_pred ChHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||..+++.|.+. ++++. +|||++++.+++.+. |. ..+.++++.++++|+|++|+|++ ...++... .++
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~-~h~e~~~~---aL~--- 89 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS-VLRAIVEP---VLA--- 89 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH-HHHHHHHH---HHH---
Confidence 688889999863 67765 789999998877654 43 45678999999999999999987 55555432 332
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.|+.++..|.......+++.+.+++
T Consensus 90 --aGk~Vi~~s~gal~~~~~L~~~A~~ 114 (271)
T PRK13302 90 --AGKKAIVLSVGALLRNEDLIDLARQ 114 (271)
T ss_pred --cCCcEEEecchhHHhHHHHHHHHHH
Confidence 2234444565555566777776665
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00023 Score=63.85 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=74.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++||+...+- .....+.....++++.+++||+|.+.+|...+.+.++... .+.. .++|.
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~--~~a~--MK~ga 227 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE--ELAK--MKPGA 227 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH--HHhh--CCCCe
Confidence 58999999999999999999933322 1222355666889999999999999999998888887642 3433 46778
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++-.....-..+.+.+.+
T Consensus 228 ilIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 228 ILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred EEEECCCcceecHHHHHHHHHc
Confidence 9999998777777777777765
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00039 Score=61.78 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=62.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
+|..++..|.+.|.+|+++||++++.......|.... .++.+.+.++|+||.++|.....++.+ +. .++
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l-------~~--~~~ 233 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVL-------SK--MPP 233 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHH-------Hc--CCC
Confidence 5889999999999999999999988877777776543 356788899999999998752222222 22 234
Q ss_pred CeEEEEcCCCCHHH
Q 022237 79 PQLLIDSSTIDPQT 92 (300)
Q Consensus 79 ~~ivid~st~~p~~ 92 (300)
+.+|||.++....+
T Consensus 234 g~vIIDla~~pggt 247 (296)
T PRK08306 234 EALIIDLASKPGGT 247 (296)
T ss_pred CcEEEEEccCCCCc
Confidence 57999988866553
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00021 Score=62.66 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=61.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHH-HhhcCCEEEEecCChh--hhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFE-VAEASDVVITMLPSSS--HVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~~~~~~~e-~~~~adiVii~vp~~~--~~~~v~~~~~~~l~~ 73 (300)
||.+++..|++.|++|+++||++++++++.+. +.....+..+ ...++|+||.|+|... .+.++... ...
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~-~~~--- 203 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVP-AEK--- 203 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCC-HHH---
Confidence 58899999999999999999999988777554 2212223333 2358999999999852 22111100 011
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 74 GNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..++.+++|+++..+.+ .+.+..++
T Consensus 204 --l~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 204 --LKEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred --cCCCCEEEEeccCCCCC--HHHHHHHH
Confidence 23557999999887766 45555554
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00047 Score=57.66 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=58.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||+.+|+.|.+.|++|+++|+++++++.+.+. |....+ ..+.. .++|+++-|.....-..+.+.+ + +
T Consensus 39 vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~-~~~l~~~~~Dv~vp~A~~~~I~~~~~~~----l------~ 107 (200)
T cd01075 39 VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVA-PEEIYSVDADVFAPCALGGVINDDTIPQ----L------K 107 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEc-chhhccccCCEEEecccccccCHHHHHH----c------C
Confidence 69999999999999999999999998888765 655443 34444 3899999775443222222221 1 2
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++|++..+..-.. .+-.+.+.+
T Consensus 108 ~~~v~~~AN~~~~~-~~~~~~L~~ 130 (200)
T cd01075 108 AKAIAGAANNQLAD-PRHGQMLHE 130 (200)
T ss_pred CCEEEECCcCccCC-HhHHHHHHH
Confidence 26888766643221 344455544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00039 Score=64.59 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=73.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+...|.+|++||+++... ..+.....+++|++++||+|.+++|...+.+.++.. ..++. .++|.
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~--~~l~~--mk~ga 233 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGA--EELAL--MKPGA 233 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCH--HHHhc--CCCCe
Confidence 58899999999999999999874321 123444568999999999999999988788777753 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-...-....+.+.+.+
T Consensus 234 ~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 234 ILINASRGTVVDIDALADALKS 255 (409)
T ss_pred EEEECCCCcccCHHHHHHHHHc
Confidence 9999998887777788887765
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00072 Score=60.68 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=73.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|.++|+++..-|.+|..|||++. -+.-...++.... ++|.++++|+|.+.+|...+.+.++.. ..++. .+++.
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~--~~l~~--mk~ga 230 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINA--EELAK--MKPGA 230 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH--HHHHh--CCCCe
Confidence 589999999977789999999986 2222222344444 999999999999999999888888764 24444 46778
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-..-...+.+.+.+++
T Consensus 231 ~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 231 ILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred EEEECCCccccCHHHHHHHHHh
Confidence 9999988777777777777765
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=59.79 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=71.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+|+.+. .-|.+|..||+....- .....+... .++++++++||+|++++|...+.+.++.. ..++. .+++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~--~~l~~--mk~g 229 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKE-AEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFGA--EQFAK--MKSS 229 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH--HHHhc--CCCC
Confidence 5889999987 6788999999874321 122334443 48999999999999999998888877753 24444 4677
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++|+++-...-.-..+.+.+.+
T Consensus 230 a~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 230 AIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred eEEEECCCccccCHHHHHHHHHc
Confidence 99999887776666777777764
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=58.25 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=64.8
Q ss_pred ChHHHHHHHHhC--CCe-EEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~--G~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..+++.|.+. +++ +.+||+++++++.+.+. +.....+.++.+.++|+|++|+|.. ...++... .++.
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~~~~~~~~---al~~--- 84 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-AVEEVVPK---SLEN--- 84 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-HHHHHHHH---HHHc---
Confidence 688899998876 355 55789999998887654 5566778899889999999999876 66665532 3321
Q ss_pred CCCeEEEEcCC---CCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSST---IDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st---~~p~~~~~~~~~~~~ 102 (300)
|+.++.+|+ ..+...+++.+..++
T Consensus 85 --Gk~Vvv~s~gAl~d~~~~~~L~~aA~~ 111 (265)
T PRK13304 85 --GKDVIIMSVGALADKELFLKLYKLAKE 111 (265)
T ss_pred --CCCEEEEchHHhcCHHHHHHHHHHHHH
Confidence 233444454 356666777766654
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0021 Score=63.71 Aligned_cols=120 Identities=12% Similarity=0.138 Sum_probs=83.9
Q ss_pred EEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHh
Q 022237 50 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLA 128 (300)
Q Consensus 50 Vii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~ 128 (300)
||+|+|.. .+.+++.++...+ +++++|.|.++++....+.+.+.+.. .. ..|+. +|++|.+..
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~-----~~~~~vtDv~SvK~~i~~~~~~~l~~-----~~-----~~fvg~HPMaG~e~~ 64 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFL-----DASTIVTDAGSTKSDVVAAARAALGA-----RI-----GQFVPGHPIAGRESS 64 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhC-----CCCcEEEecCcccHHHHHHHHHhccc-----cC-----CeEEecCCcCcCcch
Confidence 68999987 7777887654443 35589999999998888877766532 01 23443 566665432
Q ss_pred ----hh----cCceEEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHH
Q 022237 129 ----AE----AGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG 185 (300)
Q Consensus 129 ----~~----~g~~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~ 185 (300)
+. .|...+++.. +++.++.++++++.+|.+++.+.+-..-..+-+++.+-.....++
T Consensus 65 G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l 132 (673)
T PRK11861 65 GVDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFAL 132 (673)
T ss_pred hhhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHH
Confidence 22 4666777743 577899999999999999999988777777777776655443333
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.001 Score=59.58 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=70.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++|||+.... ..+.. ..++++++++||+|++++|...+.+.++.+ ..++. .+++.
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~--~~~~~--Mk~~a 226 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAY--KELKL--LKDGA 226 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCH--HHHHh--CCCCe
Confidence 58899999988899999999974321 12332 358999999999999999988888777764 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-...-....+.+.+.+
T Consensus 227 ~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 227 ILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEECCCccccCHHHHHHHHHc
Confidence 9999987776666777777764
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=60.47 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=66.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhh----hhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----VLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~----~~~v~~~~~~~l~~~~~ 76 (300)
||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++++|-... ...++.+ ..+.. .
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~--~~l~~--m 197 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE--KLIRS--L 197 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH--HHHhc--C
Confidence 68999999999999999999753211 111 2346899999999999999996532 3334432 23433 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|.++||+|-...-....+.+.+.+
T Consensus 198 k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 198 KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 66799999988777777777777754
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=53.07 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=55.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhh-hhhcCCCCcccCCCCCCCe
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~-~v~~~~~~~l~~~~~~~~~ 80 (300)
|..+|+.|...|-+|++++++|-++-+....|.... +.++++..+|++|.++.....+. +-+ +. .+.+.
T Consensus 35 G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e~~-------~~--mkdga 104 (162)
T PF00670_consen 35 GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGEHF-------RQ--MKDGA 104 (162)
T ss_dssp HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HHHH-------HH--S-TTE
T ss_pred cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHHHH-------HH--hcCCe
Confidence 889999999999999999999999888888888764 78999999999999987652221 222 22 35668
Q ss_pred EEEEcCCCCHH
Q 022237 81 LLIDSSTIDPQ 91 (300)
Q Consensus 81 ivid~st~~p~ 91 (300)
++.+.+....+
T Consensus 105 il~n~Gh~d~E 115 (162)
T PF00670_consen 105 ILANAGHFDVE 115 (162)
T ss_dssp EEEESSSSTTS
T ss_pred EEeccCcCcee
Confidence 88887765443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.022 Score=49.16 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCC
Q 022237 33 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 112 (300)
Q Consensus 33 g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
|++.+++..|+++++|++|+-+|.......++.. +++. .++|.+|.+++|++|...-++.+.+++..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikk---ii~~--lpEgAII~~tCTIpt~~ly~ilE~l~R~D-------- 192 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKK---FIDD--IPEGAIVTHACTIPTTKFAKIFEDLGRED-------- 192 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHH---HHhh--CCCCCEEeccccCChHHHHHHHHhhCccc--------
Confidence 6778888899999999999999988544455543 3333 56789999999999987777766654311
Q ss_pred CCceEEEeccCCChHhhhcCceEEEec-cCHHHHHHHHHHHHhcCCCeEeeCC
Q 022237 113 ENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGG 164 (300)
Q Consensus 113 ~~~~~~~~pv~g~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~lg~~~~~~g~ 164 (300)
+...+ -..++.+... ++..+.-+ .+++..+++-++.+..++.++.+..
T Consensus 193 --vgVsS-~HPaaVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA 241 (340)
T TIGR01723 193 --LNVTS-YHPGCVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMPA 241 (340)
T ss_pred --CCeec-cCCCCCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 11111 1122222222 33233222 2788899999999999998887753
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.001 Score=59.99 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=53.7
Q ss_pred hHHHHHHHHh--CCCeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 2 GFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 2 G~~la~~l~~--~G~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
|...++.|.. ...+|.+|||++++++.+.+. | ...+.+++++++++|+|++|+|... .++.. ..
T Consensus 140 A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P~~~~--~~--- 211 (325)
T TIGR02371 140 AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---PVVKA--DW--- 211 (325)
T ss_pred HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---cEecH--HH---
Confidence 4444444443 345899999999998877552 5 3457899999999999999998762 33321 12
Q ss_pred CCCCCCeEEEEcCCCCHH
Q 022237 74 GNSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~ 91 (300)
.++|..|...++..|.
T Consensus 212 --l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 212 --VSEGTHINAIGADAPG 227 (325)
T ss_pred --cCCCCEEEecCCCCcc
Confidence 2456677766665554
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=56.44 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---HhcCCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 022237 168 GAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 243 (300)
Q Consensus 168 a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (300)
|+.+||++|.+.++.|++++|++.+.+. .|++.+++.+++ +.+...||+.+..... + .+.+.++.+-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~i---l----~~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADI---L----RKKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHH---H----T-B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHH---H----hhccCccCcchh
Confidence 6889999999999999999999999995 689887765544 4666678876533211 1 111211111111
Q ss_pred h------HHHHHHHHHHHHHHcCCCchHHHHHH-HHHHHH
Q 022237 244 L------MAKDLNLALASAKEVGVDCPLTSQAQ-DIYAKL 276 (300)
Q Consensus 244 ~------~~kd~~~~~~~a~~~g~~~~~~~~~~-~~~~~a 276 (300)
. -...-+...+.+-++|+|.|.+.++. .++.++
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~ 113 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAVFARFLSA 113 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHHHHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 1 11123677788999999999998665 444433
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0025 Score=56.38 Aligned_cols=269 Identities=12% Similarity=0.075 Sum_probs=149.4
Q ss_pred ChHHHHHHHHhC--CC-----eEEEEcCCh------hhHHHHHhC---------------CCCCCCCHHHHhhcCCEEEE
Q 022237 1 MGFRMASNLMKA--GY-----KMAVHDVNC------NVMKMFSDM---------------GVPTKETPFEVAEASDVVIT 52 (300)
Q Consensus 1 mG~~la~~l~~~--G~-----~V~~~dr~~------~~~~~~~~~---------------g~~~~~~~~e~~~~adiVii 52 (300)
+|+++|+-+.++ ++ +|..|-+.. +++.+.... ++.+.+++.+++.++|+++.
T Consensus 32 WGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea~~dADilvf 111 (372)
T KOG2711|consen 32 WGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEAAKDADILVF 111 (372)
T ss_pred HHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHHhccCCEEEE
Confidence 478888877764 22 577774332 233333222 34567889999999999999
Q ss_pred ecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC-CC---CHH-HHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChH
Q 022237 53 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TI---DPQ-TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 127 (300)
Q Consensus 53 ~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s-t~---~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~ 127 (300)
.+|.+ .+.++++++.+.++. +...|-++ +. .+. ..+-+.+.+.+. .| .+..++.+|.+..+.
T Consensus 112 ~vPhQ-f~~~ic~~l~g~vk~-----~~~aISL~KG~e~~~~g~~i~liS~iI~~~-----lg--I~~~vL~GaNiA~EV 178 (372)
T KOG2711|consen 112 VVPHQ-FIPRICEQLKGYVKP-----GATAISLIKGVEVGEEGPGIRLISQIIHRA-----LG--IPCSVLMGANIASEV 178 (372)
T ss_pred eCChh-hHHHHHHHHhcccCC-----CCeEEEeecceeccCCCCceeehHHHHHHH-----hC--CCceeecCCchHHHH
Confidence 99997 888899887776643 23344333 11 111 234444444431 11 124577777777666
Q ss_pred hhhcCceEEEecc-CHHHHHHHHHHHHhcCCCeEeeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 128 AAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEA 189 (300)
Q Consensus 128 ~~~~g~~~~~~~g-~~~~~~~~~~ll~~lg~~~~~~g~~-----------------g~a~~~k~~~n~~~~~~~~~~~Ea 189 (300)
..+.-+-+.+..- +.+.-..+..+|+.--.++..+.+. |-...+.+.+|...+.+-..+.|+
T Consensus 179 a~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em 258 (372)
T KOG2711|consen 179 ANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEM 258 (372)
T ss_pred HhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHH
Confidence 5544332222222 3333335777777555444333321 445566678888888888999999
Q ss_pred HHHHHHc-CC-CHHHHHHH------HHhcCCCccccccCCCCCCcccCCCCCCC-CC-----C-CcchhhHHHHHHHHHH
Q 022237 190 LTLGQSL-GI-SASTLTKI------LNSSSARCWSSDSYNPVPGVMEGVPASRN-YG-----G-GFASKLMAKDLNLALA 254 (300)
Q Consensus 190 ~~l~~~~-Gi-~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~-----~-~~~~~~~~kd~~~~~~ 254 (300)
..+++.. .- .+.++++. +.+-.++ +++.....+.. ++. .+ - .-......-..+.+.+
T Consensus 259 ~~F~~~f~p~~~~~t~~escGvaDlitTC~gG----RNr~~aeafak----tgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~ 330 (372)
T KOG2711|consen 259 IKFATHFYPGSKPTTFFESCGVADLITTCYGG----RNRKVAEAFAK----TGKSLEELEKELLNGQKLQGPATAKEVYE 330 (372)
T ss_pred HHHHHHhCCCCCcceeeccccHHHHHHHHhcC----ccHHHHHHHHH----cCCCHHHHHHHhhCCCcccCcHHHHHHHH
Confidence 8888764 22 34443332 2221111 01000000000 000 00 0 0001123334577788
Q ss_pred HHHHcCC--CchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCC
Q 022237 255 SAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 297 (300)
Q Consensus 255 ~a~~~g~--~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 297 (300)
+++..++ ..|++.+++++. +++....++++++.+..
T Consensus 331 ~L~~~~l~~kfPlftaVykI~-------~~~~~~~~lle~l~~~~ 368 (372)
T KOG2711|consen 331 LLQKKGLVEKFPLFTAVYKIC-------YERLPPQALLECLRNHP 368 (372)
T ss_pred HHHHcChhhhCcHHHHHHHHH-------hcCCCHHHHHHHHhccc
Confidence 8888888 789999988886 35567777777766543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00092 Score=53.04 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--------------CHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------TPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~--------------~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||.-+|..|.++|++|.++.|++ +.+.+.+.|..... +..+.....|+||+|+... ++++++..
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~~~~~l~~ 86 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-QLEQALQS 86 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-GHHHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-chHHHHHH
Confidence 68999999999999999999999 88888776532211 1224567899999999776 77888876
Q ss_pred CCCccc
Q 022237 67 PNGLLQ 72 (300)
Q Consensus 67 ~~~~l~ 72 (300)
+++.+.
T Consensus 87 l~~~~~ 92 (151)
T PF02558_consen 87 LKPYLD 92 (151)
T ss_dssp HCTGEE
T ss_pred HhhccC
Confidence 666653
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0021 Score=57.63 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=69.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++||+++.. .. . ....++++++++||+|++++|-..+.+.++.. ..++. .++|.
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~--~~---~-~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~--~~l~~--mk~ga 227 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGAS--VC---R-EGYTPFEEVLKQADIVTLHCPLTETTQNLINA--ETLAL--MKPTA 227 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccc--cc---c-cccCCHHHHHHhCCEEEEcCCCChHHhcccCH--HHHHh--CCCCe
Confidence 5889999998889999999986431 11 1 12358999999999999999988788777764 34443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++-...-....+.+.+.+
T Consensus 228 ~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 228 FLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred EEEECCCccccCHHHHHHHHHc
Confidence 9999987776666677777764
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0022 Score=57.57 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=68.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|++||+.... ... ...++++++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~------~~~-~~~~l~ell~~sDiv~l~lPlt~~T~~li~~--~~~~~--mk~ga 227 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP------ARP-DRLPLDELLPQVDALTLHCPLTEHTRHLIGA--RELAL--MKPGA 227 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc------ccc-cccCHHHHHHhCCEEEECCCCChHHhcCcCH--HHHhc--CCCCe
Confidence 5889999999889999999986421 111 1348999999999999999988888877764 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-...-....+.+.+.+
T Consensus 228 ~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 228 LLINTARGGLVDEQALADALRS 249 (317)
T ss_pred EEEECCCccccCHHHHHHHHHc
Confidence 9999887666666677777764
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.032 Score=48.10 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=77.1
Q ss_pred CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCC
Q 022237 33 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 112 (300)
Q Consensus 33 g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
|++.+++..|+++++|++|+-+|.......++.. +++. .++|.+|.+++|++|...-++.+.+++..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikk---i~~~--ipEgAII~~tCTIpt~~ly~~le~l~R~D-------- 194 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEK---FADD--IKEGAIVTHACTIPTTKFAKIFKDLGRDD-------- 194 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHH---HHhh--CCCCCEEeccccCCHHHHHHHHHHhCccc--------
Confidence 6777888899999999999999988644555543 3333 46779999999999987777666654321
Q ss_pred CCceEE-EeccCCChHhhhcCceEEEec-cCHHHHHHHHHHHHhcCCCeEeeCC
Q 022237 113 ENPVML-DAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGG 164 (300)
Q Consensus 113 ~~~~~~-~~pv~g~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~lg~~~~~~g~ 164 (300)
.|+... .+.+.+.+ |+..+--+ .+++..+++-++.+..++.++.+..
T Consensus 195 vgIsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA 243 (342)
T PRK00961 195 LNVTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPA 243 (342)
T ss_pred CCeeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 111111 12244443 44222222 2788899999999999998887753
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00067 Score=52.99 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=46.7
Q ss_pred ChHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCC------CCCCCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMG------VPTKETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~-V~~~dr~~~~~~~~~~~g------~~~~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||++++..|.+.|.+ |+++||+.++++++.+.- .....+..+.+.++|+||.|+|.+..
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 578999999999986 999999999998887651 12344566778999999999998743
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0022 Score=57.46 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=56.0
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCCC--CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~~~~--~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..+++.|...| ++|+++||++++...+.+. |.... .+..+++.++|+||.|+|.+.. ..++.. .+... .
T Consensus 189 iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~~---~~~~~-~ 263 (311)
T cd05213 189 MGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIVER---AMKKR-S 263 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHHHH---HHhhC-C
Confidence 6888899998866 6899999999998777654 54322 2456778899999999998743 222221 11110 1
Q ss_pred CCCeEEEEcCC
Q 022237 77 VRPQLLIDSST 87 (300)
Q Consensus 77 ~~~~ivid~st 87 (300)
.++.++||.+.
T Consensus 264 ~~~~~viDlav 274 (311)
T cd05213 264 GKPRLIVDLAV 274 (311)
T ss_pred CCCeEEEEeCC
Confidence 24579999884
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0056 Score=56.38 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=68.6
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhh-HHHHH-hCC------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNV-MKMFS-DMG------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~-~~~~~-~~g------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|+.+|+.+. .-|.+|++||+++.. ...+. ..| .....++++++++||+|++++|-..+.+.++.
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin 255 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLIN 255 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcC
Confidence 5888999985 668899999998642 22111 111 12235899999999999999998878777776
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 66 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
. ..++. .++|.++||++-..--....+.+.+.+
T Consensus 256 ~--~~l~~--MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 256 K--ERLAL--MKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred H--HHHHh--CCCCeEEEECCCccccCHHHHHHHHHh
Confidence 4 34443 467799999886665555666666654
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0052 Score=57.58 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=58.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+...|.+|+++++++.+.......|+.. .++.++++.+|+|++++.+...+. . ..++. .+++.
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~----~--e~~~~--MKpGA 335 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIIT----L--EHMRR--MKNNA 335 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccC----H--HHHhc--cCCCc
Confidence 589999999999999999999988875555566653 478899999999999986543222 1 12222 24567
Q ss_pred EEEEcCCCC
Q 022237 81 LLIDSSTID 89 (300)
Q Consensus 81 ivid~st~~ 89 (300)
+++|++-..
T Consensus 336 iLINvGr~d 344 (476)
T PTZ00075 336 IVGNIGHFD 344 (476)
T ss_pred EEEEcCCCc
Confidence 999987764
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0054 Score=54.84 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=76.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|++|...|..+.-++|++...+...+.+.. ..+..+.+.++|+|++|.|.....+.++.+ ..++. .+++.
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk--~~~~~--mk~g~ 247 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINK--KFIEK--MKDGA 247 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhH--HHHHh--cCCCe
Confidence 58999999999994455558877777777666655 468899999999999999999999888874 35554 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|+++-...-.-+.+.+.+.+
T Consensus 248 vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 248 VLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred EEEeccccccccHHHHHHHHhc
Confidence 9999887777777777777764
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0072 Score=53.95 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=56.6
Q ss_pred ChHHHHHHHHh-CCC-eEEEEcCChhhHHHHHhC----CCCC-CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMK-AGY-KMAVHDVNCNVMKMFSDM----GVPT-KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~-~G~-~V~~~dr~~~~~~~~~~~----g~~~-~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||...++.+.. .+. +|.+|||++++++.+.+. +... +.+.++++.++|+|+.|+|.+. .++.. .
T Consensus 136 qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl~~~---~--- 206 (304)
T PRK07340 136 QARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PVYPE---A--- 206 (304)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ceeCc---c---
Confidence 45666777754 453 699999999998877654 2222 4678899999999999999873 34432 1
Q ss_pred CCCCCCeEEEEcCCCCHHH
Q 022237 74 GNSVRPQLLIDSSTIDPQT 92 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~~ 92 (300)
.++|+.|+..++..|..
T Consensus 207 --~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 207 --ARAGRLVVAVGAFTPDM 223 (304)
T ss_pred --CCCCCEEEecCCCCCCc
Confidence 34567777777766653
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0035 Score=46.74 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHH---hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~---~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
..+++.|.+.|.+|.+||..-....... ..+.....++.++++++|+||++++.+ +.+.+-. +.+... ..++
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~--~~~~~~--~~~~ 94 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDW--EEIAKL--MRKP 94 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGH--HHHHHH--SCSS
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCH--HHHHHh--cCCC
Confidence 4688999999999999998866554444 246777789999999999999999887 5554211 111111 1244
Q ss_pred eEEEEcCCC
Q 022237 80 QLLIDSSTI 88 (300)
Q Consensus 80 ~ivid~st~ 88 (300)
++|+|+-++
T Consensus 95 ~~iiD~~~~ 103 (106)
T PF03720_consen 95 PVIIDGRNI 103 (106)
T ss_dssp EEEEESSST
T ss_pred CEEEECccc
Confidence 799998764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=44.67 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=49.2
Q ss_pred EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022237 135 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG---AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 206 (300)
Q Consensus 135 ~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a---~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 206 (300)
.+.+.||++..+.++++++.+|.+++.+.+-... .+.-+++|+.. ..+..+..++++.|++.++..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~----~L~~~a~~ll~~~gi~~~~a~~~ 73 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLV----ALYALAAELLEQAGIDFEEALEA 73 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTT-SHHH--HH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHcCCCchhHHHH
Confidence 4556679999999999999999999999763333 55566778777 66677888899999999554443
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0053 Score=58.29 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=58.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC--CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+++..|.+.|++|+++||++++++.+.+. +... ..+.. .+.++|+||.|+|....+.. .+
T Consensus 343 iG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~-~l~~~DiVInatP~g~~~~~-------~l------ 408 (477)
T PRK09310 343 AAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLP-ELHRIDIIINCLPPSVTIPK-------AF------ 408 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhc-ccCCCCEEEEcCCCCCcchh-------HH------
Confidence 68999999999999999999999988877654 2111 11222 25689999999998743211 11
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
. ++++|++..++.+. +.+.++
T Consensus 409 ~-~~v~D~~Y~P~~T~--ll~~A~ 429 (477)
T PRK09310 409 P-PCVVDINTLPKHSP--YTQYAR 429 (477)
T ss_pred h-hhEEeccCCCCCCH--HHHHHH
Confidence 1 48999998776654 444444
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0029 Score=56.72 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=48.2
Q ss_pred CeEEEEcCChhhHHHHHhC----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 14 YKMAVHDVNCNVMKMFSDM----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.+|.+|||++++++++.+. +. ..+++.++++++||||++|++... .++.. +. .++|+.|+-.++
T Consensus 154 ~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P~~~~--~~-----l~~G~hi~~iGs 223 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---PLLQA--ED-----IQPGTHITAVGA 223 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---ceeCH--HH-----cCCCcEEEecCC
Confidence 3799999999998876542 33 336789999999999999998662 34421 12 345677776666
Q ss_pred CCHH
Q 022237 88 IDPQ 91 (300)
Q Consensus 88 ~~p~ 91 (300)
..|.
T Consensus 224 ~~p~ 227 (315)
T PRK06823 224 DSPG 227 (315)
T ss_pred CCcc
Confidence 6664
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0028 Score=56.83 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=41.5
Q ss_pred eEEEEcCChhhHHHHHhC----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 15 KMAVHDVNCNVMKMFSDM----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
+|.+|+|++++++++.+. +. ..+.++++++++||+|+.|+|.... ..++.. +. .++|+.|+..++.
T Consensus 155 ~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~-~P~~~~--~~-----l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 155 EVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP-APVFDA--EW-----LKPGTHINAIGSY 226 (313)
T ss_dssp EEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE-EESB-G--GG-----S-TT-EEEE-S-S
T ss_pred EEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC-CccccH--HH-----cCCCcEEEEecCC
Confidence 799999999988877553 33 4577999999999999999988731 134321 12 3556777776766
Q ss_pred CHH
Q 022237 89 DPQ 91 (300)
Q Consensus 89 ~p~ 91 (300)
.|.
T Consensus 227 ~~~ 229 (313)
T PF02423_consen 227 TPG 229 (313)
T ss_dssp STT
T ss_pred CCc
Confidence 554
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0085 Score=55.71 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=60.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhh-hhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~-~v~~~~~~~l~~~~~~~~ 79 (300)
||..+|+.+...|.+|+++|+++.+.......|... .+.+++++.+|+||.|+.+...+. +.+. . .++|
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~~~~~----~-----mK~G 292 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITAEHME----A-----MKDG 292 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHHHHHh----c-----CCCC
Confidence 588999999999999999999999877766667653 467889999999999987664443 2221 1 2455
Q ss_pred eEEEEcCCCCH
Q 022237 80 QLLIDSSTIDP 90 (300)
Q Consensus 80 ~ivid~st~~p 90 (300)
.++++.+....
T Consensus 293 ailiNvG~~d~ 303 (425)
T PRK05476 293 AILANIGHFDN 303 (425)
T ss_pred CEEEEcCCCCC
Confidence 78888776553
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0065 Score=50.45 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=54.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCC--C--CCC---HHHHhhcCCEEEEecCChhhhhhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP--T--KET---PFEVAEASDVVITMLPSSSHVLDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~--~--~~~---~~e~~~~adiVii~vp~~~~~~~v~~~~~ 68 (300)
+|..+++.|++.|++|++++|++++++.+.+. +.. . ..+ ..++++++|+||.++|.+.... .. ..
T Consensus 40 iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~-~~--~~ 116 (194)
T cd01078 40 VGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAGVELL-EK--LA 116 (194)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCceec-hh--hh
Confidence 47889999999999999999999988776542 111 1 122 3467889999999998874311 11 01
Q ss_pred CcccCCCCCCCeEEEEcCCCCH
Q 022237 69 GLLQGGNSVRPQLLIDSSTIDP 90 (300)
Q Consensus 69 ~~l~~~~~~~~~ivid~st~~p 90 (300)
.. ..++.+++|..-..+
T Consensus 117 ~~-----~~~~~vv~D~~~~~~ 133 (194)
T cd01078 117 WA-----PKPLAVAADVNAVPP 133 (194)
T ss_pred cc-----cCceeEEEEccCCCC
Confidence 01 123578999765444
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.015 Score=53.82 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=63.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhh-hhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~-v~~~~~~~l~~~~~~~~ 79 (300)
+|..+|+.+...|.+|+++|+++.+.......|... .+.+++++.+|+||.++.....+.. .+. . .++|
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG~~~vI~~~~~~----~-----mK~G 275 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATGNKDVIRGEHFE----N-----MKDG 275 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCCCHHHHHHHHHh----c-----CCCC
Confidence 488899999999999999999998877666667644 3568889999999999977644442 221 1 2455
Q ss_pred eEEEEcCCCCH-HHHHHHHH
Q 022237 80 QLLIDSSTIDP-QTSRNISA 98 (300)
Q Consensus 80 ~ivid~st~~p-~~~~~~~~ 98 (300)
.++++.+-... -....+.+
T Consensus 276 ailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 276 AIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred cEEEEECCCCceeCHHHHHH
Confidence 78898776543 33334433
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0065 Score=54.15 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=46.9
Q ss_pred eEEEEcCChhhHHHHHhC-----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 15 KMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~-----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
+|.+|||++++++++.+. | +..+.++++++++||||++|+|... .++.. +. .++|+.|.-.++
T Consensus 144 ~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---P~~~~--~~-----l~pg~hV~aiGs 213 (301)
T PRK06407 144 RIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---PIFNR--KY-----LGDEYHVNLAGS 213 (301)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---cEecH--HH-----cCCCceEEecCC
Confidence 799999999998877543 4 3456899999999999999998762 34321 12 234566665555
Q ss_pred CCHH
Q 022237 88 IDPQ 91 (300)
Q Consensus 88 ~~p~ 91 (300)
..|.
T Consensus 214 ~~p~ 217 (301)
T PRK06407 214 NYPN 217 (301)
T ss_pred CCCC
Confidence 5554
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=55.41 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=59.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhh-hhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV-LDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~-~~v~~~~~~~l~~~~~~~~ 79 (300)
+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+||.+..+...+ .+.+. . .+++
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~L~----~-----MK~G 334 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDHMR----K-----MKNN 334 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHHHh----c-----CCCC
Confidence 5899999999999999999999988766666676543 6788999999999988765333 33332 1 2455
Q ss_pred eEEEEcCCC
Q 022237 80 QLLIDSSTI 88 (300)
Q Consensus 80 ~ivid~st~ 88 (300)
.++++++..
T Consensus 335 AiLiNvGr~ 343 (477)
T PLN02494 335 AIVCNIGHF 343 (477)
T ss_pred CEEEEcCCC
Confidence 799998774
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0045 Score=47.28 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=46.7
Q ss_pred ChHHHHHHHHhC-CCeEEEE-cCChhhHHHHHhCCCCC------CCCHHHH-hhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA-GYKMAVH-DVNCNVMKMFSDMGVPT------KETPFEV-AEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~-dr~~~~~~~~~~~g~~~------~~~~~e~-~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
+|..++..|.+. ++++... ++++++.+.+...+... .-+..+. ..++|+||+|+|++... +++.. +.
T Consensus 11 ~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~-~~~~~---~~ 86 (122)
T smart00859 11 VGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSK-EIAPL---LP 86 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHH-HHHHH---HH
Confidence 355677777774 7777654 76654444433322110 0111111 25899999999998544 44321 11
Q ss_pred cCCCCCCCeEEEEcCCCC
Q 022237 72 QGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~ 89 (300)
.. ..+|++|||+|++.
T Consensus 87 ~~--~~~g~~viD~s~~~ 102 (122)
T smart00859 87 KA--AEAGVKVIDLSSAF 102 (122)
T ss_pred hh--hcCCCEEEECCccc
Confidence 11 24568999999864
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.01 Score=53.59 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=43.7
Q ss_pred ChHHHHHHHHh-CCC-eEEEEcCChhhHHHHHhC-----CCC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMK-AGY-KMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~-~G~-~V~~~dr~~~~~~~~~~~-----g~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|...++.|.. .+. +|++|+|++++++++.+. |.. ...+++++++++|+|+.|+|..
T Consensus 140 qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 140 QARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred HHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 35566777763 564 699999999999887653 433 3578899999999999999876
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.019 Score=54.09 Aligned_cols=145 Identities=13% Similarity=0.134 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCC--CeEeeCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHH
Q 022237 142 EDAYQAAKPLFLSMGK--NTIYCGGAG-----NGAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILN 208 (300)
Q Consensus 142 ~~~~~~~~~ll~~lg~--~~~~~g~~g-----~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~----~--Gi~~~~~~~~~~ 208 (300)
++++.+..+.++.... ...+.|+.+ .++.+|++.|++.+..+.+.+|++.+.++ + .+|..++.++++
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 4566666666655421 112345433 27899999999999999999999999987 4 589999999999
Q ss_pred hcC-CCccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 209 SSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 209 ~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
.|+ ..||+++..... +.....-.+ +.+.|. +......++.++..+-+.|+|+|.+.+++..|+.....-+..
T Consensus 351 ~GcIIRs~lL~~i~~a---~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~a 427 (459)
T PRK09287 351 GGCIIRAQFLQKITDA---YEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPA 427 (459)
T ss_pred CCCEEeHHHHHHHHHH---HHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Confidence 887 567765432211 000000001 111121 233444568899999999999999999998888777665554
Q ss_pred CchHHH
Q 022237 284 KDFSCV 289 (300)
Q Consensus 284 ~d~~~~ 289 (300)
.=+.+.
T Consensus 428 nliqaq 433 (459)
T PRK09287 428 NLIQAQ 433 (459)
T ss_pred HHHHHH
Confidence 434433
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.023 Score=53.76 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCC--CeEeeCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHH
Q 022237 142 EDAYQAAKPLFLSMGK--NTIYCGGAG------NGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKIL 207 (300)
Q Consensus 142 ~~~~~~~~~ll~~lg~--~~~~~g~~g------~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~ 207 (300)
.+++++..+.++.... ...+.|+.+ ..+.+|++.|++.+..+.+.+|++.+.++ +++|..++.+++
T Consensus 278 ~av~~R~~S~~k~~r~~~~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iW 357 (467)
T TIGR00873 278 ESVFARYLSSLKEERVAASKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIW 357 (467)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 4556666666655421 112334422 37899999999999999999999999987 789999999999
Q ss_pred HhcC-CCccccccCCCCCCcccCCCCCCC--CCCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCC
Q 022237 208 NSSS-ARCWSSDSYNPVPGVMEGVPASRN--YGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 282 (300)
Q Consensus 208 ~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g 282 (300)
+.++ ..+++++..... +.....-.+ +++.|. +......++.++..+-+.|+|+|.+.++...|+.....-+.
T Consensus 358 r~GcIIrs~lL~~i~~a---~~~~~~l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~ 434 (467)
T TIGR00873 358 RGGCIIRSGFLDKITKA---FAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLP 434 (467)
T ss_pred CCCceeeHhHHHHHHHH---HHcCCChhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCccc
Confidence 9987 567765532211 100000001 111121 23445556889999999999999999999888887764444
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0072 Score=54.24 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=50.1
Q ss_pred CeEEEEcCChhhHHHHHhC----C---CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC
Q 022237 14 YKMAVHDVNCNVMKMFSDM----G---VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS 86 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~----g---~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s 86 (300)
-+|.+|+|+++.++++... + +..+.|.++++++||+|+.|+|+.. .++.. +. .++|+.|.-.+
T Consensus 156 ~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---Pil~~--~~-----l~~G~hI~aiG 225 (330)
T COG2423 156 REIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---PVLKA--EW-----LKPGTHINAIG 225 (330)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---CeecH--hh-----cCCCcEEEecC
Confidence 3799999999998887643 3 4578899999999999999999884 44431 22 34566666556
Q ss_pred CCCHHHH
Q 022237 87 TIDPQTS 93 (300)
Q Consensus 87 t~~p~~~ 93 (300)
+-.|...
T Consensus 226 ad~p~k~ 232 (330)
T COG2423 226 ADAPGKR 232 (330)
T ss_pred CCCcccc
Confidence 5555433
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.017 Score=53.57 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=58.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhh-hcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v-~~~~~~~l~~~~~~~~ 79 (300)
+|..+++.+...|.+|+++|+++.+.......|+... +.+++++.+|+||.|+..+..+..- +. .+ ++|
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~~l~----~m-----k~G 282 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGEHFE----QM-----KDG 282 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHHHHh----cC-----CCC
Confidence 5888999999999999999999999988888887543 5678889999999999776444432 21 22 344
Q ss_pred eEEEEcCC
Q 022237 80 QLLIDSST 87 (300)
Q Consensus 80 ~ivid~st 87 (300)
.++++.+.
T Consensus 283 gilvnvG~ 290 (413)
T cd00401 283 AIVCNIGH 290 (413)
T ss_pred cEEEEeCC
Confidence 68887774
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0079 Score=54.53 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=46.9
Q ss_pred CeEEEEcCChhhHHHHHhC----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 14 YKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.+|++|+|++++++.+.+. + +..+.++++++++||||++|+|.. .-..++.. +. .++|+.|.-.++
T Consensus 155 ~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~Pvl~~--~~-----lkpG~hV~aIGs 226 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNATILTD--DM-----VEPGMHINAVGG 226 (346)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCCceecH--HH-----cCCCcEEEecCC
Confidence 3799999999998876543 3 334678999999999999999754 21133321 12 345566665555
Q ss_pred CCHH
Q 022237 88 IDPQ 91 (300)
Q Consensus 88 ~~p~ 91 (300)
..|.
T Consensus 227 ~~p~ 230 (346)
T PRK07589 227 DCPG 230 (346)
T ss_pred CCCC
Confidence 5554
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0087 Score=57.19 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=46.5
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--CCC----CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--GVP----TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~--g~~----~~~~~~e~~~~adiVii~vp~~ 57 (300)
||..+++.|...|+ +|+++||++++++.+.+. +.. ...+..+++.++|+||.|+|.+
T Consensus 277 mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 277 MGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 78999999999997 699999999999888764 221 2346677889999999998665
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.017 Score=52.14 Aligned_cols=81 Identities=10% Similarity=0.122 Sum_probs=55.1
Q ss_pred hHHHHHHHHh-CCC-eEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 2 GFRMASNLMK-AGY-KMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 2 G~~la~~l~~-~G~-~V~~~dr~~~~~~~~~~~-----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
|...+..+.. .+. +|.+|||++++++++.+. +. ....+.++++.++|+|++|+|... .++. ..
T Consensus 139 a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~---p~i~---~~-- 210 (325)
T PRK08618 139 AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT---PVFS---EK-- 210 (325)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC---cchH---Hh--
Confidence 4455555543 343 799999999999887652 33 346788999999999999999873 2332 12
Q ss_pred CCCCCCCeEEEEcCCCCHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTS 93 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~ 93 (300)
.++|+.|+..++-.|...
T Consensus 211 ---l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 211 ---LKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred ---cCCCcEEEecCCCCcccc
Confidence 345677777777666543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.016 Score=46.99 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=45.6
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|..+++.|.+.|.+|++.+|+. .++.+.+.++|+||.|++.+. ++.. +.+ .++.+
T Consensus 57 G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~~--~~~-----~~~~v 111 (168)
T cd01080 57 GKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVKG--DMV-----KPGAV 111 (168)
T ss_pred HHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eecH--HHc-----cCCeE
Confidence 6678999999998899999873 355678899999999998873 2221 122 23478
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.+..
T Consensus 112 iIDla~p 118 (168)
T cd01080 112 VIDVGIN 118 (168)
T ss_pred EEEccCC
Confidence 9997763
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=52.50 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=48.3
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCC---C-------CCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG---V-------PTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g---~-------~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
+|++.|..|+++| ++|++.||++++++++.... . .....+.+++++.|+||.|.|.....
T Consensus 12 Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~ 82 (389)
T COG1748 12 VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVDL 82 (389)
T ss_pred hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhhH
Confidence 4899999999999 89999999999999986653 1 12224567888999999999988543
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.045 Score=43.93 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=36.0
Q ss_pred CeEEEEcCChhh----HHHHHhCCCC------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEE
Q 022237 14 YKMAVHDVNCNV----MKMFSDMGVP------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI 83 (300)
Q Consensus 14 ~~V~~~dr~~~~----~~~~~~~g~~------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivi 83 (300)
-+|.+.+|+.-- ...+.+.++. .+.++.+.+++||+||.+++.+..++. +. .++|.+||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~i~~------~~-----ik~gavVI 105 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGKPNLIKA------DW-----IKPGAVVI 105 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-B-G------GG-----S-TTEEEE
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeecccccccc------cc-----ccCCcEEE
Confidence 456666666432 1223333432 124678889999999999988844321 12 35668999
Q ss_pred EcCCCCH
Q 022237 84 DSSTIDP 90 (300)
Q Consensus 84 d~st~~p 90 (300)
|++....
T Consensus 106 DvG~~~~ 112 (160)
T PF02882_consen 106 DVGINYV 112 (160)
T ss_dssp E--CEEE
T ss_pred ecCCccc
Confidence 9887544
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.015 Score=53.41 Aligned_cols=83 Identities=13% Similarity=0.170 Sum_probs=53.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCC---CC---CCHHHHhhcCCEEEEecCChhh-hhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP---TK---ETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~---~~---~~~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~l~ 72 (300)
+|...++.+.+.|.+|+++||++++++.+... +.. .. .++.+.++++|+||.|++.+.. ...++. ...+.
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit--~~~l~ 255 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVS--NSLVA 255 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcC--HHHHh
Confidence 47888999999999999999999998877654 221 11 2345678899999999854211 111221 11222
Q ss_pred CCCCCCCeEEEEcCC
Q 022237 73 GGNSVRPQLLIDSST 87 (300)
Q Consensus 73 ~~~~~~~~ivid~st 87 (300)
. .+++.+|||.+.
T Consensus 256 ~--mk~g~vIvDva~ 268 (370)
T TIGR00518 256 Q--MKPGAVIVDVAI 268 (370)
T ss_pred c--CCCCCEEEEEec
Confidence 2 234578999775
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.021 Score=51.58 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=53.0
Q ss_pred ChHHHHHHHHhC-CC-eEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~-G~-~V~~~dr~~~~~~~~~~~-----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||...++.|... +. .|.+|||++++.+++.+. +. ....+.+++++ +|+|++|+|... .++.. +.
T Consensus 140 qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---P~~~~--~~- 212 (326)
T PRK06046 140 QARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---PVVKA--EW- 212 (326)
T ss_pred HHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---cEecH--HH-
Confidence 355666666643 33 688999999998877653 32 34668888887 999999999862 34321 11
Q ss_pred cCCCCCCCeEEEEcCCCCHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~ 91 (300)
.++|+.|...++..|.
T Consensus 213 ----l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 213 ----IKEGTHINAIGADAPG 228 (326)
T ss_pred ----cCCCCEEEecCCCCCc
Confidence 3455677766665554
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.011 Score=55.26 Aligned_cols=58 Identities=21% Similarity=0.231 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCC--CCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVP--TKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~~--~~~~~~e~~~~adiVii~vp~~~ 58 (300)
||..+++.|...| .+|++|||+++++..+.+. |.. ...+..+.+.++|+||.|++.+.
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 6889999999999 7899999999988777654 432 22456678889999999997764
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.072 Score=40.15 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=65.2
Q ss_pred hHHHHHHHHhC--CCeEE-EEcCChhhHHHHHh-CCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 2 GFRMASNLMKA--GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 2 G~~la~~l~~~--G~~V~-~~dr~~~~~~~~~~-~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
|......+.+. ++++. ++|+++++.+.+.+ .|....+|.++.++ +.|+|++++|+....+-+.. .++.
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~----~l~~-- 85 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKK----ALEA-- 85 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHH----HHHT--
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHH----HHHc--
Confidence 44555666665 44654 78999999988744 47788889999987 79999999999865544432 2321
Q ss_pred CCCCeEEEEcC-CCCHHHHHHHHHHHhhh
Q 022237 76 SVRPQLLIDSS-TIDPQTSRNISAAVSNC 103 (300)
Q Consensus 76 ~~~~~ivid~s-t~~p~~~~~~~~~~~~~ 103 (300)
+..++++-= ...+.+.+++.+...+.
T Consensus 86 --g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 86 --GKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp --TSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred --CCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 225666632 35778888888887653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.045 Score=42.95 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=46.1
Q ss_pred CCeEEEEcCChhhHHHHH----hCCCC--CCC----CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEE
Q 022237 13 GYKMAVHDVNCNVMKMFS----DMGVP--TKE----TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL 82 (300)
Q Consensus 13 G~~V~~~dr~~~~~~~~~----~~g~~--~~~----~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~iv 82 (300)
|.+|.+|+|+....+.+. +.|+. .++ ++++.+++||+|+.+++.+.. +. .+. .++|.+|
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~----i~--~~~-----ikpGa~V 96 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK----VP--TEW-----IKPGATV 96 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc----cC--HHH-----cCCCCEE
Confidence 558999999988765543 34543 233 788999999999999988722 21 112 3566899
Q ss_pred EEcCCCC
Q 022237 83 IDSSTID 89 (300)
Q Consensus 83 id~st~~ 89 (300)
+|.+...
T Consensus 97 idvg~~~ 103 (140)
T cd05212 97 INCSPTK 103 (140)
T ss_pred EEcCCCc
Confidence 9987655
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.032 Score=50.48 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=42.7
Q ss_pred hHHHHHHHHh-CC-CeEEEEcCChhhHHHHHhC-----CCC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~-~G-~~V~~~dr~~~~~~~~~~~-----g~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
|.+.+..+.. .+ .+|.+|+|++++++.+.+. |.. ...++++++.++|+|+.|+|..
T Consensus 144 a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 4555566664 34 4799999999999888663 333 3578889999999999999876
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.041 Score=48.43 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=45.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|.++|..|...|..|++++++. .++.+.+++||+||.+++.+.-+.. +.+ ++|.
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~------~~v-----k~ga 224 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK------DVV-----KEGA 224 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH------HHc-----CCCc
Confidence 47788888888888888877542 3567889999999999988732221 122 3458
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
+|||.++.
T Consensus 225 vVIDvGi~ 232 (286)
T PRK14175 225 VIIDVGNT 232 (286)
T ss_pred EEEEcCCC
Confidence 99998763
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.047 Score=45.04 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=50.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---CCCCC--CC----HHHHhhcCCEEEEecCChhh-hhhhhcCCCCc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---GVPTK--ET----PFEVAEASDVVITMLPSSSH-VLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~---g~~~~--~~----~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~ 70 (300)
.|.+||.-|.+.|..|+++|.+.-.. +... .-..+ .+ +.+.+++|||||.+++.+.- +. .+.
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~------~d~ 145 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP------TEL 145 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccC------HHH
Confidence 48899999999999999997654322 1100 00011 12 67889999999999999843 22 112
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
.++|.+|||.++..
T Consensus 146 -----ik~GavVIDVGi~~ 159 (197)
T cd01079 146 -----LKDGAICINFASIK 159 (197)
T ss_pred -----cCCCcEEEEcCCCc
Confidence 34568999988754
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.051 Score=47.76 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=40.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.+++..|.+.|..|++++. .+.++.+.+++||+||.+++.+.-+.. +. .++|.+
T Consensus 171 GkPla~lL~~~~atVt~~hs--------------~t~~l~~~~~~ADIVV~avG~~~~i~~------~~-----ik~gav 225 (285)
T PRK14189 171 GKPMAMLLLQAGATVTICHS--------------KTRDLAAHTRQADIVVAAVGKRNVLTA------DM-----VKPGAT 225 (285)
T ss_pred HHHHHHHHHHCCCEEEEecC--------------CCCCHHHHhhhCCEEEEcCCCcCccCH------HH-----cCCCCE
Confidence 55555555555555555432 134677889999999999998733221 12 345689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.++.
T Consensus 226 VIDVGin 232 (285)
T PRK14189 226 VIDVGMN 232 (285)
T ss_pred EEEcccc
Confidence 9998864
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.015 Score=54.50 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=46.1
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCC--CCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~~--~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||..+++.|...|+ +|+++||+++++..+... |... ..+..+.+.++|+||.|+|.+..
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP 255 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence 68889999999997 799999999998877654 4322 23456678899999999987743
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.12 Score=48.87 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCC--C
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 236 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~----~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 236 (300)
+.++.+|.+.|++.+..+.+.+|++.+.++ + ++|..++.++++.++ ..+++++..... +.....-.+ +
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a---~~~~~~l~nl~~ 392 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNA---FKKNPQLDLLFL 392 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHH---HhcCCChhhhcC
Confidence 678999999999999999999999999873 4 899999999999887 567765532211 000000001 1
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCC
Q 022237 237 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 282 (300)
Q Consensus 237 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g 282 (300)
.+.|. +......++.++..+-+.|+|+|.+.+++..|+.....-+.
T Consensus 393 ~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~ 440 (470)
T PTZ00142 393 DPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLP 440 (470)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc
Confidence 11121 23344556889999999999999999999977776655444
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.026 Score=52.50 Aligned_cols=58 Identities=5% Similarity=0.060 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-C-CC--CCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G-VP--TKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g-~~--~~~~~~e~~~~adiVii~vp~~~ 58 (300)
||..++..|...|. +++++||++++++.+.+. + .. ..++..+.+.++|+||.|++.+.
T Consensus 192 ~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 192 TGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 78999999999995 799999999999888765 2 22 22445677889999999998873
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.028 Score=51.81 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.-.|++|..+| .+|++.||+.+++.++.+. |+. ..+.+.+.+.++|+||.++..+
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 7888999999999 5799999999999988775 533 3445677889999999998655
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.056 Score=48.28 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHH----HhC--------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SDM--------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~----~~~--------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||..+|..++..|+ +|.++|++++..+.. .+. .+..+.+.++ +++||+||++++.+
T Consensus 12 vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 12 VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 79999999999887 899999987654311 111 1223456665 78999999999854
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.032 Score=47.55 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=47.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh--CCCC---C-CC---CHHHH-hhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MGVP---T-KE---TPFEV-AEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~--~g~~---~-~~---~~~e~-~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|+.+|+.|.+.||+|.+.|++++++++... .... . .+ .+.++ +.++|+++.++.++ .+..++.
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d-~~N~i~~ 84 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND-EVNSVLA 84 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC-HHHHHHH
Confidence 5899999999999999999999999988554 2221 1 11 23344 56899999999887 5444443
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.056 Score=48.25 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=38.7
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHH----hC----C--CC--CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM----G--VP--TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~----~~----g--~~--~~~~~~e~~~~adiVii~vp 55 (300)
||.++|..++..|+ +|.++|+++++++... +. + .+ ...+. +.+++||+||+++.
T Consensus 13 vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 13 VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 68999999999876 9999999987654321 11 1 11 22344 56899999999974
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.094 Score=40.67 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=48.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-----CCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
|..+|..|.+.|++|++.|.|++.++.+.+.+.. .....-+..+++|+|-.+-|.++-.+.++
T Consensus 28 G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~ 95 (134)
T PRK04148 28 YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL 95 (134)
T ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 4568999999999999999999999888777543 22334567889999999999885444443
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.058 Score=48.04 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=38.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHH----HHhC----C----CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM----G----VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~----~~~~----g----~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||..+|..|+..|+ +|+++|++++++.. +... + +....+ .+.+++||+||+++..
T Consensus 9 vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g~ 76 (300)
T cd01339 9 VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAGI 76 (300)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecCC
Confidence 79999999998887 99999999876431 1111 1 112234 4568999999998843
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.036 Score=48.78 Aligned_cols=58 Identities=9% Similarity=0.060 Sum_probs=44.0
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCC-C----CCCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG-V----PTKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g-~----~~~~~~~e~~~~adiVii~vp~~~ 58 (300)
+|++++..|.+.| .+|+++||++++++.+.+.- . ....+..+.+.++|+||-|+|...
T Consensus 134 ~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 134 AARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 4789999999999 68999999999988876541 1 111123466788999999998763
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.093 Score=46.11 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=40.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.+++.-|.+.|..|+++++. +.++.+.++++|+||.+++.+..+.. +. .++|.+
T Consensus 172 G~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~------~~-----vk~gav 226 (285)
T PRK10792 172 GRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG------EW-----IKPGAI 226 (285)
T ss_pred HHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH------HH-----cCCCcE
Confidence 555555555555555555432 34678889999999999988743322 12 345689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.++.
T Consensus 227 VIDvGin 233 (285)
T PRK10792 227 VIDVGIN 233 (285)
T ss_pred EEEcccc
Confidence 9998753
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.058 Score=52.88 Aligned_cols=64 Identities=11% Similarity=0.211 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---H-HhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---E-VAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e-~~~~adiVii~vp~~~~~~~v~ 64 (300)
+|..+++.|.++|+++++.|.|+++++.+.+.|... +++++ + -++++|.+++++++++....+.
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~ 482 (601)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIV 482 (601)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHH
Confidence 478899999999999999999999999998877532 12222 1 1568999999999986654444
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.062 Score=47.15 Aligned_cols=68 Identities=26% Similarity=0.288 Sum_probs=53.0
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc-CCCCcc
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-GPNGLL 71 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~-~~~~~l 71 (300)
|.+=|.+|..+|.+|++--|.-.. .+...+.|... .+.+|+++.+|+|++.+||. .-.+|+. ++.+.+
T Consensus 30 G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe-~q~~vy~~~I~p~L 99 (338)
T COG0059 30 GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDE-QQKEVYEKEIAPNL 99 (338)
T ss_pred HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchh-hHHHHHHHHhhhhh
Confidence 677889999999999887665544 67777778775 58999999999999999997 4466776 444444
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.15 Score=44.40 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=60.9
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||..+++.+.+. ++++. ++|+++++.......++....+++++++++|+|+.++|.. ...+++.. .++. +
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~-~~~~~~~~---al~~----G 84 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE-ATLENLEF---ALEH----G 84 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH-HHHHHHHH---HHHc----C
Confidence 788888888764 67755 5899987765553335666788888888999999888665 44555432 2321 2
Q ss_pred CeEEEEcCCCCHHHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISA 98 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~ 98 (300)
-.+|+-+++.++....++.+
T Consensus 85 ~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 85 KPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred CCEEEECCCCCHHHHHHHHH
Confidence 25666655667777777766
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.12 Score=45.36 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=29.8
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.+++.+.-+.. +. .++|.+|||.++..
T Consensus 192 ~~l~~~~~~ADIvI~AvG~~~~i~~------~~-----vk~GavVIDvGin~ 232 (284)
T PRK14170 192 KDLPQVAKEADILVVATGLAKFVKK------DY-----IKPGAIVIDVGMDR 232 (284)
T ss_pred CCHHHHHhhCCEEEEecCCcCccCH------HH-----cCCCCEEEEccCcc
Confidence 4678889999999999998843221 12 34568999988754
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.049 Score=48.16 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----C-CC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G-VP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g-~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|++++..|.+.|. +|+++||+.++++.+.+. . .. ...+..+.++++|+||-|+|..
T Consensus 138 aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 138 AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 47889999999997 799999999999888653 1 11 1234455678899999999865
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.76 E-value=3.3 Score=38.06 Aligned_cols=267 Identities=14% Similarity=0.148 Sum_probs=140.8
Q ss_pred HHHHHHHhCCC-eEEEEcCChhhHHHHHhC---------------------CC----CCCCCHHHHhhcCCEEEEecCCh
Q 022237 4 RMASNLMKAGY-KMAVHDVNCNVMKMFSDM---------------------GV----PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 4 ~la~~l~~~G~-~V~~~dr~~~~~~~~~~~---------------------g~----~~~~~~~e~~~~adiVii~vp~~ 57 (300)
-+|..|.+.+. +|=+.+|...+.+.+-+. |- ....+.+++..+=|.+|+|||.+
T Consensus 15 QLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g~WdtlILavtaD 94 (429)
T PF10100_consen 15 QLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEGEWDTLILAVTAD 94 (429)
T ss_pred HHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcccccEEEEEechH
Confidence 35666666554 588889987776655331 10 12345566667889999999998
Q ss_pred hhhhhhhcCCC-CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhh----hhhccCCCCCceEEEeccC-CChHhhhc
Q 022237 58 SHVLDVYNGPN-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI----LKEKKDSWENPVMLDAPVS-GGVLAAEA 131 (300)
Q Consensus 58 ~~~~~v~~~~~-~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~pv~-g~~~~~~~ 131 (300)
+-.+|+.++. ..+.. .+ ++|+-..|.... .-+...+.+.+ +.+-..+....++++.-.. .-...+.+
T Consensus 95 -AY~~VL~ql~~~~L~~---vk-~iVLvSPtfGS~--~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~vlt~~vK 167 (429)
T PF10100_consen 95 -AYLDVLQQLPWEVLKR---VK-SIVLVSPTFGSH--LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRVLTTAVK 167 (429)
T ss_pred -HHHHHHHhcCHHHHhh---CC-EEEEECcccchH--HHHHHHHHhcCCCceEEEeecccccceeccCCCcceehhhhhh
Confidence 7788988763 23332 12 444443343322 12233333210 0000000011222222100 00111222
Q ss_pred CceEEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHH-----------------HH-------------------
Q 022237 132 GTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAA-----------------AK------------------- 172 (300)
Q Consensus 132 g~~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~-----------------~k------------------- 172 (300)
. .+++|. +....+++..+++.+|-.+..+..+=.|+. ++
T Consensus 168 ~--kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEG 245 (429)
T PF10100_consen 168 K--KIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEG 245 (429)
T ss_pred c--eEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCC
Confidence 2 344543 456778999999999965555544222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CC---ccc---cccCCCCCCccc--------------C--
Q 022237 173 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-AR---CWS---SDSYNPVPGVME--------------G-- 229 (300)
Q Consensus 173 ~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~---s~~---~~~~~~~~~~~~--------------~-- 229 (300)
-+...++.-+.....|.+.+..+.|+++--+++.++... .. +.. -+.+...+...+ .
T Consensus 246 PIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRYtsiLIDPFS 325 (429)
T PF10100_consen 246 PITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRYTSILIDPFS 325 (429)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHhhhheeCCCC
Confidence 122233344567889999999999999988888888641 00 000 011111111000 0
Q ss_pred --CCCCCCCCC--------------Ccchh----hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 230 --VPASRNYGG--------------GFASK----LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 230 --~~~~~~~~~--------------~~~~~----~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
.-..+-|+. -+.+. +-.+-+..+..+++.+|+++|..+...+.|+....+
T Consensus 326 ~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~~ 395 (429)
T PF10100_consen 326 EPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLSQ 395 (429)
T ss_pred CCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 000111111 11111 223347899999999999999999999998887763
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.49 Score=42.44 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCCh-hhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~-~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||...++.+.++ ++++. +||+++ +++.. ..+.....+..+...+.|+|++|+|+......+.. .+.
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~~--~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~----~L~----- 82 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLDT--ETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAP----YFA----- 82 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh--cCCccccCCHHHhccCCCEEEEcCCCccCHHHHHH----HHH-----
Confidence 578888888765 67876 579995 44331 22444445667777899999999998765544432 232
Q ss_pred CCeEEEEcCC
Q 022237 78 RPQLLIDSST 87 (300)
Q Consensus 78 ~~~ivid~st 87 (300)
.|.-+|++..
T Consensus 83 aG~NVV~s~~ 92 (324)
T TIGR01921 83 QFANTVDSFD 92 (324)
T ss_pred cCCCEEECCC
Confidence 2356776543
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.12 Score=45.64 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=29.6
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.+++.+.-+. .+. .++|.+|||+++..
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~------~~~-----ik~gavVIDvGin~ 233 (297)
T PRK14186 193 QDLASITREADILVAAAGRPNLIG------AEM-----VKPGAVVVDVGIHR 233 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC------HHH-----cCCCCEEEEecccc
Confidence 467888999999999999884322 112 34568999987643
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.13 Score=45.21 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=29.7
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.+++.+.-+. .+. .++|.+|||.++..
T Consensus 190 ~~l~~~~~~ADIvIsAvGkp~~i~------~~~-----vk~GavVIDVGin~ 230 (287)
T PRK14173 190 QDLPAVTRRADVLVVAVGRPHLIT------PEM-----VRPGAVVVDVGINR 230 (287)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC------HHH-----cCCCCEEEEccCcc
Confidence 467888999999999998883322 122 34568999988643
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.13 Score=45.15 Aligned_cols=40 Identities=8% Similarity=0.120 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++|||||.+++.+.-+.. +. .++|.+|||.+..
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~i~~------~~-----vk~GavVIDvGin 230 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHFIGA------DA-----VKPGAVVIDVGIS 230 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH------HH-----cCCCcEEEEeecc
Confidence 4678889999999999998843321 12 3456899998763
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.14 Score=44.92 Aligned_cols=41 Identities=7% Similarity=0.157 Sum_probs=30.1
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+..++||+||.+++.+.-+. .+. .++|.+|||.++..
T Consensus 194 ~~l~~~~~~ADIvIsAvGk~~~i~------~~~-----ik~gavVIDvGin~ 234 (284)
T PRK14177 194 QNLPSIVRQADIIVGAVGKPEFIK------ADW-----ISEGAVLLDAGYNP 234 (284)
T ss_pred CCHHHHHhhCCEEEEeCCCcCccC------HHH-----cCCCCEEEEecCcc
Confidence 467788999999999999884332 112 34668999988754
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.13 Score=45.41 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++||+||.++..+.-+. .+. .++|.+|||.+...
T Consensus 202 ~nl~~~~~~ADIvv~AvGk~~~i~------~~~-----vk~gavVIDvGin~ 242 (299)
T PLN02516 202 PDPESIVREADIVIAAAGQAMMIK------GDW-----IKPGAAVIDVGTNA 242 (299)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC------HHH-----cCCCCEEEEeeccc
Confidence 467888999999999998873222 112 34668999988643
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.099 Score=45.61 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCChhhHHHHHhC-----------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFSDM-----------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~e~~~~adiVii~v 54 (300)
||..++..|+..| .+|.++|+++++++..... .+..++++.+++++||+||++.
T Consensus 10 vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 10 VGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 6889999999988 6899999998765433221 1223456688999999999966
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.062 Score=48.02 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC--------C--CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G--VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~--------g--~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+++|..|+..| ++|.++|+++++++.+... + ........+.+++||+||+++..+
T Consensus 11 vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 11 VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 5899999999999 6899999999887655332 1 112223345578999999999764
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.05 Score=44.23 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=42.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp~ 56 (300)
+|..+++.|.+.||+|++..|++++.+. ..++. ...+..++++++|.||.+++.
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 4889999999999999999999998887 33321 112346778899999999974
|
... |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.041 Score=50.63 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=35.1
Q ss_pred eEEEEcCChhhHHHHHhC------C---CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 15 KMAVHDVNCNVMKMFSDM------G---VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~------g---~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+|||++++++++.+. + +..+.++++++++||||+.|++..
T Consensus 183 ~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 183 TIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 799999999998876542 2 335689999999999999999764
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.15 Score=44.73 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=29.7
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+..++|||||.+++.+.-+.. +. .++|.+|||++...
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~i~~------~~-----vk~GavVIDvGin~ 232 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNLLRS------DM-----VKEGVIVVDVGINR 232 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccCH------HH-----cCCCCEEEEecccc
Confidence 4678889999999999998843321 12 34568999987643
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.071 Score=51.78 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=47.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---H-HhhcCCEEEEecCChhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---E-VAEASDVVITMLPSSSHVLDV 63 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e-~~~~adiVii~vp~~~~~~~v 63 (300)
+|+.+++.|.++|++|+++|.|+++++++.+.|... ..+++ + -++++|.++++++++.....+
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~i 498 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEI 498 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHH
Confidence 488999999999999999999999999998876432 12222 1 146899999999887554333
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.15 Score=44.71 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=29.1
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+..++||+||.+++.+.-+.. +. .++|.+|||.++.
T Consensus 193 ~dl~~~~k~ADIvIsAvGkp~~i~~------~~-----vk~gavVIDvGin 232 (282)
T PRK14180 193 TDLKSHTTKADILIVAVGKPNFITA------DM-----VKEGAVVIDVGIN 232 (282)
T ss_pred CCHHHHhhhcCEEEEccCCcCcCCH------HH-----cCCCcEEEEeccc
Confidence 4677889999999999998843321 12 3456899998763
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.16 Score=44.56 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=29.5
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++||+||.+++.+.-+. .+. .++|.+|||.+...
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~------~~~-----ik~gavVIDvGin~ 233 (278)
T PRK14172 193 KNLKEVCKKADILVVAIGRPKFID------EEY-----VKEGAIVIDVGTSS 233 (278)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC------HHH-----cCCCcEEEEeeccc
Confidence 467888999999999999884322 112 34568999986543
|
|
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.0019 Score=51.27 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHhcC----CCccccccCCCCCCcccCCCCCCCCC---
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS-TLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYG--- 237 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~-~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~--- 237 (300)
|....+++..|+..+.+..++.|+..+++..|-+++ +++.....+. ..+..++++..+..+.++. ..++
T Consensus 21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~---~~~~~~~ 97 (149)
T PF07479_consen 21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGG---KSIEEAE 97 (149)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTT---S-HHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccC---CCHHHHH
Confidence 555667778999999999999999999999999888 5544322221 1111122222111111110 0010
Q ss_pred ---CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 022237 238 ---GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 274 (300)
Q Consensus 238 ---~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~ 274 (300)
..-...+....++.+.+++++.++++|++.++++++.
T Consensus 98 ~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 98 KEMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILY 137 (149)
T ss_dssp HHHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHH
T ss_pred HhhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHc
Confidence 0112345667789999999999999999999999875
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.15 Score=44.83 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=39.0
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.+++.-|.+.|..|++++. .+.++.+.+++||+||.+++.+.-+. .+. .++|.+
T Consensus 171 G~Pla~lL~~~~atVt~chs--------------~t~~l~~~~~~ADIvI~AvG~p~~i~------~~~-----ik~gav 225 (284)
T PRK14190 171 GKPVGQLLLNENATVTYCHS--------------KTKNLAELTKQADILIVAVGKPKLIT------ADM-----VKEGAV 225 (284)
T ss_pred HHHHHHHHHHCCCEEEEEeC--------------CchhHHHHHHhCCEEEEecCCCCcCC------HHH-----cCCCCE
Confidence 45555555555555554431 12467788999999999998874221 112 345689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.+..
T Consensus 226 VIDvGi~ 232 (284)
T PRK14190 226 VIDVGVN 232 (284)
T ss_pred EEEeecc
Confidence 9998764
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.48 Score=43.00 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=60.7
Q ss_pred ChHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCCh----hhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS----SHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~----~~~~~v~~~~~~~l~ 72 (300)
||...+..+.+. ++++. ++|+++++++++.+. |+...++.++.+++.|++++++|+. ...+-+.. .++
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~----aL~ 88 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARA----LLA 88 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHH----HHh
Confidence 455666777664 46655 679999999888765 7777889999999899999998652 22221211 222
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
. +.+++++ .-....+++++.+..++
T Consensus 89 a----GkHVL~E-KPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 89 R----GIHVLQE-HPLHPRDIQDLLRLAER 113 (343)
T ss_pred C----CCeEEEc-CCCCHHHHHHHHHHHHH
Confidence 1 1134443 44446777887777765
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.052 Score=48.74 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH----HhC-------C-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF----SDM-------G-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~----~~~-------g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+||..+..+|++++..|.|..-++.- ... + .... ....-++++|.|+-+|-.
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~-~Dy~~~~~~dmvieav~e 79 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVET-LDYTGFANADMVIEAVFE 79 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccc-cccccccccceeccchhh
Confidence 99999999999999999999996554311 110 1 1111 112346799999888866
Q ss_pred hhhhh-hhhcCCCCc
Q 022237 57 SSHVL-DVYNGPNGL 70 (300)
Q Consensus 57 ~~~~~-~v~~~~~~~ 70 (300)
+-.++ +++.+++.+
T Consensus 80 dl~Lk~~l~~~le~v 94 (380)
T KOG1683|consen 80 DLELKHELFKSLEKV 94 (380)
T ss_pred hHHHHHHHHHHHHhh
Confidence 64443 344444333
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.17 Score=44.66 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.1
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++|||||.+++.+.-+.. +. .++|.+|||.+..
T Consensus 195 ~~l~~~~~~ADIvVsAvGkp~~i~~------~~-----ik~gaiVIDVGin 234 (294)
T PRK14187 195 RDLADYCSKADILVAAVGIPNFVKY------SW-----IKKGAIVIDVGIN 234 (294)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH------HH-----cCCCCEEEEeccc
Confidence 4678889999999999998843321 12 3456899997753
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.18 Score=44.28 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=30.2
Q ss_pred CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 37 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 37 ~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
+.++.+.+++||+||.+++.+.-+. .+. .++|.+|||++...
T Consensus 194 T~~l~~~~k~ADIvV~AvGkp~~i~------~~~-----ik~GavVIDvGin~ 235 (284)
T PRK14193 194 TRDLAAHTRRADIIVAAAGVAHLVT------ADM-----VKPGAAVLDVGVSR 235 (284)
T ss_pred CCCHHHHHHhCCEEEEecCCcCccC------HHH-----cCCCCEEEEccccc
Confidence 3467888999999999999884322 112 34568999987643
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.15 Score=43.53 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=53.8
Q ss_pred EEEEcCChhhHHHHHhC-CCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC---CH
Q 022237 16 MAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI---DP 90 (300)
Q Consensus 16 V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~---~p 90 (300)
+.+||+++++++.+.+. |...+.+.++.+ .+.|+|++|+|.. ...+...+ .++. +.++++ .|.. ..
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~-~H~e~a~~---aL~a----GkhVl~-~s~gAlad~ 75 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQE-AVKEYAEK---ILKN----GKDLLI-MSVGALADR 75 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChH-HHHHHHHH---HHHC----CCCEEE-ECCcccCCH
Confidence 55899999999888664 677788899886 5899999999998 44444432 3332 224555 4543 45
Q ss_pred HHHHHHHHHHhh
Q 022237 91 QTSRNISAAVSN 102 (300)
Q Consensus 91 ~~~~~~~~~~~~ 102 (300)
...+++.+..++
T Consensus 76 e~~~~l~~aA~~ 87 (229)
T TIGR03855 76 ELRERLREVARS 87 (229)
T ss_pred HHHHHHHHHHHh
Confidence 667777777665
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.053 Score=50.74 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=36.9
Q ss_pred HhCCCeEEEEcCChhhHHHHHhC--------C----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 10 MKAGYKMAVHDVNCNVMKMFSDM--------G----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 10 ~~~G~~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
..+|++|.+||+++++++..... + +..+++..+++++||+||+++|..
T Consensus 26 ~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~~ 85 (423)
T cd05297 26 ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQVG 85 (423)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEec
Confidence 44578999999999887665332 1 234668889999999999999864
|
linked to 3D####ucture |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.19 Score=44.09 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++||+||.+++.+.-+. .+. .++|.+|||.++..
T Consensus 192 ~~l~~~~~~ADIvV~AvGkp~~i~------~~~-----vk~gavvIDvGin~ 232 (281)
T PRK14183 192 KDLKAHTKKADIVIVGVGKPNLIT------EDM-----VKEGAIVIDIGINR 232 (281)
T ss_pred cCHHHHHhhCCEEEEecCcccccC------HHH-----cCCCcEEEEeeccc
Confidence 456788999999999998884322 112 34568999988643
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.2 Score=44.05 Aligned_cols=40 Identities=5% Similarity=0.085 Sum_probs=28.9
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.++..+..+. .+. .++|.+|||.++.
T Consensus 199 ~~l~~~~~~ADIvv~AvG~p~~i~------~~~-----vk~gavVIDvGin 238 (287)
T PRK14176 199 DDLKKYTLDADILVVATGVKHLIK------ADM-----VKEGAVIFDVGIT 238 (287)
T ss_pred CCHHHHHhhCCEEEEccCCccccC------HHH-----cCCCcEEEEeccc
Confidence 467888999999999998874321 112 3456899998864
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.21 Score=43.98 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=29.0
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++|||||.++..+..+.. +. .++|.+|||++..
T Consensus 194 ~~L~~~~~~ADIvV~AvGkp~~i~~------~~-----vk~GavVIDvGin 233 (288)
T PRK14171 194 HNLSSITSKADIVVAAIGSPLKLTA------EY-----FNPESIVIDVGIN 233 (288)
T ss_pred CCHHHHHhhCCEEEEccCCCCccCH------HH-----cCCCCEEEEeecc
Confidence 4678889999999999988843321 12 3456899998753
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.18 Score=38.54 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=55.8
Q ss_pred ChHHHHHHHHh-CCCeEE-EEcCChh-hH----HHH---HhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMK-AGYKMA-VHDVNCN-VM----KMF---SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~-~G~~V~-~~dr~~~-~~----~~~---~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||+.+++.+.+ .++++. +++++++ .. .++ ...|....++++++++.+|+||-.. .+..+.+.+.. .
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~---~ 87 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAVYDNLEY---A 87 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHHHHHHHH---H
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHhHHHHHH---H
Confidence 89999999998 678855 5688872 11 122 1336677789999999999999988 66566666542 2
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAAV 100 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~~ 100 (300)
++. +-.+|+=+|+-.++...++.+..
T Consensus 88 ~~~----g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 88 LKH----GVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHH----T-EEEEE-SSSHHHHHHHHHHHT
T ss_pred HhC----CCCEEEECCCCCHHHHHHHHHHh
Confidence 221 22455544445556556665543
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.15 Score=44.62 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=39.9
Q ss_pred CCeEEEEcCChhhHHH---H-HhCCCC------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEE
Q 022237 13 GYKMAVHDVNCNVMKM---F-SDMGVP------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL 82 (300)
Q Consensus 13 G~~V~~~dr~~~~~~~---~-~~~g~~------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~iv 82 (300)
|.+|.+.+|+...-.. + ...|+. .+.++.+.+++||+||.+++.+.- +. .+.+ ++|.+|
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~l----v~--~~~v-----k~GavV 220 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGF----IT--PDMV-----KPGATV 220 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccc----cC--HHHc-----CCCcEE
Confidence 4467777777544333 2 223332 124577889999999999986622 21 1122 456899
Q ss_pred EEcCCC
Q 022237 83 IDSSTI 88 (300)
Q Consensus 83 id~st~ 88 (300)
||.+..
T Consensus 221 IDVgi~ 226 (279)
T PRK14178 221 IDVGIN 226 (279)
T ss_pred EEeecc
Confidence 998864
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.099 Score=46.16 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=42.3
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-C----CCCCC---CHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G----VPTKE---TPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g----~~~~~---~~~e~~~~adiVii~vp~~~ 58 (300)
||++++..|.+.|. +|+++||++++++.+.+. + +.... +..+.+.++|+||-|+|...
T Consensus 136 aarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 136 TSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 57889999999997 699999999999888653 1 11111 12244577899999988763
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.23 Score=43.63 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=28.8
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.+++.+.-+. .+. .++|.+|||.+..
T Consensus 192 ~nl~~~~~~ADIvI~AvGk~~~i~------~~~-----ik~gaiVIDvGin 231 (282)
T PRK14182 192 ADLAGEVGRADILVAAIGKAELVK------GAW-----VKEGAVVIDVGMN 231 (282)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC------HHH-----cCCCCEEEEeece
Confidence 467788999999999998873322 112 3456899998764
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.22 Score=44.84 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+..++|||||.+++.+.-+.. +. .++|.+|||.+..
T Consensus 249 ~nl~~~~~~ADIvIsAvGkp~~v~~------d~-----vk~GavVIDVGin 288 (345)
T PLN02897 249 KDPEQITRKADIVIAAAGIPNLVRG------SW-----LKPGAVVIDVGTT 288 (345)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH------HH-----cCCCCEEEEcccc
Confidence 4678889999999999998843321 12 3466899998764
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.12 Score=46.34 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHH----HHhCC-----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDMG-----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~----~~~~g-----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..|+..| .+|.++|+++++++. +.... .....+..+.+++||+||++++.+
T Consensus 11 VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 11 VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 4899999999999 589999999877653 32211 011112346689999999999865
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.3 Score=36.49 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=47.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHHH----HhhcCCEEEEecCChhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFE----VAEASDVVITMLPSSSHVLDV 63 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~e----~~~~adiVii~vp~~~~~~~v 63 (300)
+|..+++.|.+.+.+|++.|++++..+.+.+.|... ..++.. -+++++.|+++++++..-..+
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~ 79 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI 79 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence 478899999997779999999999999999887532 122221 246899999999888543333
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.062 Score=50.04 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=47.1
Q ss_pred ChHHHHHHHHhCCCeEEEE------cCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVH------DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~------dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|.+.|.+|...|++|++- |.+....+.+.+.|... .+..|+++.||+|++.+|+. .-..+..
T Consensus 47 qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~~ 115 (487)
T PRK05225 47 QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVVR 115 (487)
T ss_pred HHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHHH
Confidence 3777888888899998843 33345566666678755 68999999999999999998 4444553
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.25 Score=44.71 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++|||||.+++.+.-+.. +. .++|.+|||.+..
T Consensus 266 ~nl~~~~r~ADIVIsAvGkp~~i~~------d~-----vK~GAvVIDVGIn 305 (364)
T PLN02616 266 KNPEEITREADIIISAVGQPNMVRG------SW-----IKPGAVVIDVGIN 305 (364)
T ss_pred CCHHHHHhhCCEEEEcCCCcCcCCH------HH-----cCCCCEEEecccc
Confidence 4678889999999999988843321 12 3466899997753
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.22 Score=43.78 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=27.6
Q ss_pred CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 39 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 39 ~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
++.+.+++||+||.+++.+.-+. .+. .++|.+|||.+..
T Consensus 193 ~l~~~~~~ADIvV~AvG~p~~i~------~~~-----vk~GavVIDvGi~ 231 (285)
T PRK14191 193 DLSFYTQNADIVCVGVGKPDLIK------ASM-----VKKGAVVVDIGIN 231 (285)
T ss_pred HHHHHHHhCCEEEEecCCCCcCC------HHH-----cCCCcEEEEeecc
Confidence 45678899999999998883322 112 3456899998763
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.3 Score=42.98 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.+++.+.-+. .+. .++|.+|||.+..
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~------~~~-----ik~GavVIDvGin 231 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIK------EEM-----IAEKAVIVDVGTS 231 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC------HHH-----cCCCCEEEEeccc
Confidence 467888999999999998883322 112 3466899998764
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.45 Score=40.14 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=41.7
Q ss_pred Ce-EEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 14 YK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 14 ~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
++ +.+|||+.+++..+.+. +.+..++++|.+++.|+++-|-. ++++++...+
T Consensus 26 ~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~~~ 79 (255)
T COG1712 26 FELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYVPK 79 (255)
T ss_pred eeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHhHH
Confidence 44 78999999999888765 55566889999999999999994 4588887643
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.25 Score=45.12 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
..++..|.+.|.+|.+||.....-....-.+....++++++++++|++++++.++ +++++-
T Consensus 333 ~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~-ef~~~d 393 (414)
T COG1004 333 LDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD-EFRDLD 393 (414)
T ss_pred HHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH-HHhccC
Confidence 3578899999999999997643322222124677889999999999999999887 666653
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.1 Score=39.52 Aligned_cols=73 Identities=19% Similarity=0.376 Sum_probs=46.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.-+.+.|.++|++|+..|.+.+.+ .|.....++.|.-...|++++++|.. .+.+++.+.... .-+.+
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~~~~~~------g~~~v 83 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVDEAAAL------GVKAV 83 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHHHHHHH------T-SEE
T ss_pred HHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHHHHHHc------CCCEE
Confidence 5667889999999999998776433 35667788888447999999999876 666777543221 12257
Q ss_pred EEEcC
Q 022237 82 LIDSS 86 (300)
Q Consensus 82 vid~s 86 (300)
|+..+
T Consensus 84 ~~~~g 88 (116)
T PF13380_consen 84 WLQPG 88 (116)
T ss_dssp EE-TT
T ss_pred EEEcc
Confidence 77655
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.23 Score=48.95 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=49.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---H-HhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---E-VAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e-~~~~adiVii~vp~~~~~~~v~ 64 (300)
+|..+++.|.++|+++++.|.|+++++.+.+.|... .++++ + -++++|.+++++++++....+.
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~ 482 (621)
T PRK03562 411 FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQLV 482 (621)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHH
Confidence 488899999999999999999999999998887532 12222 1 2458999999998876544444
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.49 Score=41.35 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+..+++|+|+.++..+.-++ .+. .++|.++||.+...
T Consensus 191 ~~l~~~~k~ADIvv~AvG~p~~i~------~d~-----vk~gavVIDVGinr 231 (283)
T COG0190 191 KDLASITKNADIVVVAVGKPHFIK------ADM-----VKPGAVVIDVGINR 231 (283)
T ss_pred CCHHHHhhhCCEEEEecCCccccc------ccc-----ccCCCEEEecCCcc
Confidence 467788999999999998873332 122 34568999977643
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.3 Score=42.13 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=36.2
Q ss_pred eEEEEcCChhhHHHHHhC----------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 15 KMAVHDVNCNVMKMFSDM----------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~----------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+|+|+++.+.++.+. .+..+.+..+++..+|||+.|++..
T Consensus 166 eVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst 218 (333)
T KOG3007|consen 166 EVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST 218 (333)
T ss_pred EEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence 799999999998888763 2456778899999999999999775
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.29 Score=44.03 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=37.6
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHH----HhC----CC--C--CCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMF----SDM----GV--P--TKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~----~~~----g~--~--~~~~~~e~~~~adiVii~v 54 (300)
||.+++..++..| .++.++|+++++++.. ... +. . ...+.+ ++++||+||++.
T Consensus 16 vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 16 IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 6889999999888 5899999998754321 111 11 1 224444 789999999999
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.42 Score=42.34 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=28.9
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.++..+.-+. .+. .++|.+|||.+..
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp~~i~------~~~-----ik~gavVIDvGin 239 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVPNLVK------PEW-----IKPGATVIDVGVN 239 (297)
T ss_pred cCHHHHHhhCCEEEEecCCcCccC------HHH-----cCCCCEEEecCCC
Confidence 467888999999999998874322 112 3466899998763
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.17 Score=47.73 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC-------CCCHHHH-hhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT-------KETPFEV-AEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~-------~~~~~e~-~~~adiVii~vp~~~ 58 (300)
+|..+++.|.+.|++|+++|+++++.+.+.+ .+... ...+.++ +.++|.||++++++.
T Consensus 11 ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 11 VGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 5889999999999999999999999988876 33211 1123344 678999999998873
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.21 Score=44.69 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.++||+|++.+|++++...+...++. ...+..++++++|+||-+++
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 48999999999999999999998776555444432 12245677889999998864
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.36 Score=42.60 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=42.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.+++..|.+.|..|+++++. +.++.+.++++|+||.|++.+.- +. .+. .+++.+
T Consensus 172 Gkpia~~L~~~gatVtv~~~~--------------t~~L~~~~~~aDIvI~AtG~~~~----v~--~~~-----lk~gav 226 (283)
T PRK14192 172 GKPMAMMLLNANATVTICHSR--------------TQNLPELVKQADIIVGAVGKPEL----IK--KDW-----IKQGAV 226 (283)
T ss_pred HHHHHHHHHhCCCEEEEEeCC--------------chhHHHHhccCCEEEEccCCCCc----CC--HHH-----cCCCCE
Confidence 678888888888888888763 23455667899999999976531 11 112 245689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|+|+...
T Consensus 227 ViDvg~n 233 (283)
T PRK14192 227 VVDAGFH 233 (283)
T ss_pred EEEEEEe
Confidence 9997754
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.87 Score=40.97 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=59.9
Q ss_pred HHHHHHHhCCC--e-EEEEcCChhhHHHHHhC-CC-CCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 4 RMASNLMKAGY--K-MAVHDVNCNVMKMFSDM-GV-PTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 4 ~la~~l~~~G~--~-V~~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
..+..+.+.+. . |.++|+++++++.+.+. |. ...++.++.+++ .|+|+||+|+....+-+... +..
T Consensus 18 ~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~A----L~a--- 90 (342)
T COG0673 18 AHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAA----LEA--- 90 (342)
T ss_pred HhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHH----Hhc---
Confidence 34556666553 3 56789999999888765 65 377899999875 59999999999766555432 221
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+.+++++-= +....+++++.+..++
T Consensus 91 -GkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 91 -GKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred -CCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 113444311 3556677777776654
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.5 Score=41.72 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=29.8
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.+++.+.-+. .+. .++|.+|||.+...
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~------~~~-----vk~gavVIDvGin~ 236 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVK------ADM-----VKEGAVVIDVGTTR 236 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC------HHH-----cCCCCEEEEecCcc
Confidence 467888999999999999884332 122 34568999987643
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.31 Score=44.08 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=43.5
Q ss_pred ChHHHHHHHHhC-C-CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~-G-~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||+.+++.|... | .++++++|+++++..+..+ +.....+..+++.++|+|+.+...+
T Consensus 167 IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 167 IGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP 226 (340)
T ss_pred HHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC
Confidence 689999999854 5 5899999999988887654 2122236778899999999988554
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.39 Score=34.05 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
||.+++..|.+. +.+|.+||| |++|.|++.+..+
T Consensus 34 ~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~ 68 (86)
T cd05191 34 VGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPV 68 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCc
Confidence 477888888887 568888988 9999999877444
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.46 Score=41.96 Aligned_cols=91 Identities=12% Similarity=0.202 Sum_probs=61.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
|..+-.++...|++ .+|..||.+ .+++ .|.+...+..|+-+. .|++++++|.+ .+.+++.+. .+. .-+
T Consensus 19 ~~~~~~~~~~~g~~-~v~~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~e~---~~~--Gvk 89 (286)
T TIGR01019 19 GSFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIFEA---IDA--GIE 89 (286)
T ss_pred HHHHHHHHHhCCCC-EEEEECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHHHH---HHC--CCC
Confidence 56677788888998 777777763 2222 377888899998776 79999999987 666666543 211 112
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..+|-+++......+++.+..++
T Consensus 90 -~avIis~Gf~e~~~~~l~~~a~~ 112 (286)
T TIGR01019 90 -LIVCITEGIPVHDMLKVKRYMEE 112 (286)
T ss_pred -EEEEECCCCCHHHHHHHHHHHHH
Confidence 46666666665545667776655
|
ATP citrate lyases appear to form an outgroup. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.078 Score=40.39 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhCCC-e-EEEEcCChhhHHHHHhC-----C---CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKAGY-K-MAVHDVNCNVMKMFSDM-----G---VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~G~-~-V~~~dr~~~~~~~~~~~-----g---~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
+|+.|.+.|.++-+ + +.++.++.+.-..+... + ........+.+.++|+||+|+|.. ...+.... +
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~~~~~~~---~ 86 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-ASKELAPK---L 86 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HHHHHHHH---H
T ss_pred HHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HHHHHHHH---H
Confidence 47889999988433 4 55667666322222222 1 122222334569999999999887 44555432 2
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
+ ..|..|||.|+..
T Consensus 87 ~-----~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 87 L-----KAGIKVIDLSGDF 100 (121)
T ss_dssp H-----HTTSEEEESSSTT
T ss_pred h-----hCCcEEEeCCHHH
Confidence 2 2347899999854
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.49 Score=41.93 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=59.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
|+.+.++|.+.|++ .+|=.||.+ .+++ .|.+...+..|+-+. .|+.++++|.+ .+.+++.+. .+. .-+
T Consensus 21 g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l~e~---~~~--gvk 91 (291)
T PRK05678 21 GTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPP-FAADAILEA---IDA--GID 91 (291)
T ss_pred HHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHHHHH---HHC--CCC
Confidence 66778888888887 555444432 1222 377788899998776 89999999987 666666543 221 112
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..+|-+++......+++.+..++
T Consensus 92 -~avI~s~Gf~~~~~~~l~~~a~~ 114 (291)
T PRK05678 92 -LIVCITEGIPVLDMLEVKAYLER 114 (291)
T ss_pred -EEEEECCCCCHHHHHHHHHHHHH
Confidence 45666677665545577776655
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.25 Score=42.92 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=42.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh-cCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~-~adiVii~vp~~ 57 (300)
||++|...|.+.||+|++..|++.+.+..........+..++... .+|+||=-...+
T Consensus 10 IG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~ 67 (297)
T COG1090 10 IGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEP 67 (297)
T ss_pred hhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCc
Confidence 699999999999999999999998887665544333344455555 689888655443
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.34 Score=42.91 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=38.1
Q ss_pred ChHHHHHHHHhCCCe-EEEEcCCh---hhHHHHHhC----CC--CC--C--C---CHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYK-MAVHDVNC---NVMKMFSDM----GV--PT--K--E---TPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~-V~~~dr~~---~~~~~~~~~----g~--~~--~--~---~~~e~~~~adiVii~vp~~ 57 (300)
+|++++..|++.|.+ |+++||++ ++++++.+. +. .. . . +..+.++.+|+||-|+|-.
T Consensus 137 agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~G 210 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVG 210 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCC
Confidence 378899999999986 99999997 666555431 11 11 1 1 1223456789999988765
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.53 Score=41.45 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=28.0
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.++.+.+++||+||.+++.+.-+.. +. .++|.+|||.+.
T Consensus 196 ~~l~~~~~~ADIVI~AvG~p~li~~------~~-----vk~GavVIDVGi 234 (286)
T PRK14184 196 PDLAEECREADFLFVAIGRPRFVTA------DM-----VKPGAVVVDVGI 234 (286)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCH------HH-----cCCCCEEEEeee
Confidence 3577889999999999988743221 12 245689999775
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.69 Score=40.98 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=29.3
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.+++|||||.++..+.-+.. +. .++|.+|||.+...
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~i~~------~~-----ik~gaiVIDvGin~ 236 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPELIDG------SM-----LSEGATVIDVGINR 236 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH------HH-----cCCCCEEEEccccc
Confidence 4677889999999999988843221 12 34568999987643
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.4 Score=40.70 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=43.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh--hHHHHHhCCCCC-------CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPT-------KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~--~~~~~~~~g~~~-------~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|.+.+|+|.+.-|++. ..+.+...|+.. ..++.++++++|.||+++|.
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 489999999999999999988864 466777776532 22445678999999999983
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.38 Score=42.85 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=41.2
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC--------C-CCC--CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G-VPT--KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~--------g-~~~--~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+++|..|+..| +++.++|++++++...... . ... ..+ .+.+++||+||++...+
T Consensus 9 VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 9 VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP 77 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence 4889999999988 5899999999876554332 1 111 233 56889999999999754
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.29 Score=45.19 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=42.7
Q ss_pred ChHHHHHHHHhCC-C-eEEEEcCChhhHHHHHhC--C---------CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG-Y-KMAVHDVNCNVMKMFSDM--G---------VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G-~-~V~~~dr~~~~~~~~~~~--g---------~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||+.+++.|++.+ + +|++.||+.++++++.+. + +....++.+.++++|+||-|+|..
T Consensus 9 vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 5899999999886 4 899999999999888753 1 111123456788999999999776
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.51 Score=41.98 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCC
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
-+++.|.+.|++|.++.-+.+. ....|+....+.+++++++|+|+..+|.
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred HHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 4788999999999987544321 1234777777888999999999999885
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.55 Score=44.84 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=39.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--CC---------------C----------HHHHhhcCCEEEEec
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KE---------------T----------PFEVAEASDVVITML 54 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~---------------~----------~~e~~~~adiVii~v 54 (300)
|...+..+...|..|+++|+++++.+.+...|... .+ + ..+.++++|+||.|+
T Consensus 176 Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~Ta 255 (511)
T TIGR00561 176 GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTA 255 (511)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 66667777788999999999999988887766542 00 1 234567899999999
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.3 Score=38.81 Aligned_cols=93 Identities=15% Similarity=0.297 Sum_probs=58.5
Q ss_pred ChHHHHHHHHh-CCCeEE-EEcCC-hhhH----HHHHh---CCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMK-AGYKMA-VHDVN-CNVM----KMFSD---MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~-~G~~V~-~~dr~-~~~~----~~~~~---~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||..+++.+.+ .++++. ++||+ ++.. ..+.. .|+..+.++++....+|+||.++|.. ...+++.. .
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~-~~~~~~~~---a 88 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPE-GVLNHLKF---A 88 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChH-HHHHHHHH---H
Confidence 78999999886 467755 57854 3321 12211 24555678887755799999999776 55555432 2
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
++. +-.+|+-+++.++...+++.+..+
T Consensus 89 l~~----g~~vVigttg~~~e~~~~l~~aA~ 115 (266)
T TIGR00036 89 LEH----GVRLVVGTTGFSEEDKQELADLAE 115 (266)
T ss_pred HHC----CCCEEEECCCCCHHHHHHHHHHHh
Confidence 321 225777666777777777766654
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.91 E-value=3.8 Score=34.48 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 022237 33 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 100 (300)
Q Consensus 33 g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~ 100 (300)
|...+++.+|+++++|+|+.=+|...--.+++.. +.+. .++|.||.+.+|+.-....++-+..
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikk---fidd--ipegaivthactipttkf~kifed~ 188 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKK---FIDD--IPEGAIVTHACTIPTTKFKKIFEDM 188 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHH---HHhc--CCCCceEeeecccchHHHHHHHHHh
Confidence 4566778899999999999999987433444432 3332 5678999999998866555554444
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.47 Score=42.78 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=57.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|..+|+++...|.+|++++.+|-++-+..=.|.+. ...+|++..+|++|+|+... +|+.. +.+.. .+.+.|
T Consensus 221 GrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V-~~m~~Aa~~gDifiT~TGnk----dVi~~--eh~~~--MkDgaI 291 (420)
T COG0499 221 GRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKTGDIFVTATGNK----DVIRK--EHFEK--MKDGAI 291 (420)
T ss_pred chHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEE-EEhHHhhhcCCEEEEccCCc----CccCH--HHHHh--ccCCeE
Confidence 78999999999999999999999887776668766 46789999999999999765 23321 12222 345667
Q ss_pred EEEcC
Q 022237 82 LIDSS 86 (300)
Q Consensus 82 vid~s 86 (300)
+.+.+
T Consensus 292 l~N~G 296 (420)
T COG0499 292 LANAG 296 (420)
T ss_pred Eeccc
Confidence 77755
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.45 Score=43.33 Aligned_cols=80 Identities=23% Similarity=0.182 Sum_probs=47.2
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHh-C----CC---CC-CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M----GV---PT-KETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~-~----g~---~~-~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
+|..+.+.|.+. ++++. ++++++..-+.+.+ . +. .. ..+.++..+++|+||+|+|+. ...++...
T Consensus 12 vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-~s~~~~~~--- 87 (346)
T TIGR01850 12 TGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-VSAELAPE--- 87 (346)
T ss_pred HHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-HHHHHHHH---
Confidence 477888888876 45777 55654422222221 1 11 11 114556656899999999998 44445432
Q ss_pred cccCCCCCCCeEEEEcCCCC
Q 022237 70 LLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~ 89 (300)
+. ..|..|||.|+..
T Consensus 88 ~~-----~~G~~VIDlS~~f 102 (346)
T TIGR01850 88 LL-----AAGVKVIDLSADF 102 (346)
T ss_pred HH-----hCCCEEEeCChhh
Confidence 22 2347899999854
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.9 Score=40.25 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=28.0
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.+++||+||.+++.+.- +. .+. .++|.+|||.+..
T Consensus 198 ~~l~~~~~~ADIvI~Avg~~~l----i~--~~~-----vk~GavVIDVgi~ 237 (295)
T PRK14174 198 KDIPSYTRQADILIAAIGKARF----IT--ADM-----VKPGAVVIDVGIN 237 (295)
T ss_pred hhHHHHHHhCCEEEEecCccCc----cC--HHH-----cCCCCEEEEeecc
Confidence 3568889999999999977622 21 122 2456899998753
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.1 Score=38.21 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=49.1
Q ss_pred ChHHHHHHHHhCCC---eEEEEcCC----hhhH-------HHHHhC-CCC-CCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGY---KMAVHDVN----CNVM-------KMFSDM-GVP-TKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~---~V~~~dr~----~~~~-------~~~~~~-g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
+|.+++..|.+.|. +++++||+ .++. ..+.+. +.. ...++.++++++|+||-++|...-.++++
T Consensus 36 Ag~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~~~~~l 115 (226)
T cd05311 36 AGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEMI 115 (226)
T ss_pred HHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCCCCCCCCHHHH
Confidence 47889999999997 59999999 4543 223222 111 11367788889999999997432112222
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 65 NGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 65 ~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.. + .++.+|.+.++-.
T Consensus 116 ~~----m-----~~~~ivf~lsnP~ 131 (226)
T cd05311 116 KK----M-----AKDPIVFALANPV 131 (226)
T ss_pred Hh----h-----CCCCEEEEeCCCC
Confidence 21 1 1235777888544
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.89 Score=41.01 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=41.3
Q ss_pred HHHHHHHh-CCCeEEEEcCChhhHHHHHhCCCCCC-----CCHHHHh-hcCCEEEEecCChhhhhhhh
Q 022237 4 RMASNLMK-AGYKMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVA-EASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 4 ~la~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~e~~-~~adiVii~vp~~~~~~~v~ 64 (300)
.+|.-+++ .|.+|+++||++++.+.+.+.|+... .+..+.+ +..|+|+.++| +..+.+-+
T Consensus 180 h~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l 246 (339)
T COG1064 180 HMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL 246 (339)
T ss_pred HHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH
Confidence 35555665 79999999999999999988876421 1122222 23888888888 65666554
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.36 Score=37.87 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=39.7
Q ss_pred hHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC----------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM----------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~----------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
|.++|..|...+. ++.++|+++++++..... .........+.+++||+|+++...+
T Consensus 13 G~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 13 GSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred HHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 7889999998875 799999998766433221 1223335567788999999988443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.57 Score=41.95 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh------HHHHHhC---------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV------MKMFSDM---------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~------~~~~~~~---------g~~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+.+.|+++||.|.+.=|+++. +.++... -+....+..+++++||.||=+.
T Consensus 18 Igswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 18 IGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 5889999999999999999888876 3333211 1334567889999999999754
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.77 Score=39.26 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=41.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|.++|+.|+++|++|++..|+.++++++..+-. + ..+..+.+=|.+..+++..+.
T Consensus 18 iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~-------~--~~~~~~~~DVtD~~~~~~~i~ 73 (246)
T COG4221 18 IGEATARALAEAGAKVVLAARREERLEALADEIG-------A--GAALALALDVTDRAAVEAAIE 73 (246)
T ss_pred HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhc-------c--CceEEEeeccCCHHHHHHHHH
Confidence 5899999999999999999999999999976411 0 244455555667666555554
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.72 Score=35.04 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=29.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~ 35 (300)
+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~ 36 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD 36 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc
Confidence 36677777778899999999999999999888753
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.56 Score=37.86 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=50.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC--------------------------CHHHHhhcCCEEEEecC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------------------TPFEVAEASDVVITMLP 55 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~--------------------------~~~e~~~~adiVii~vp 55 (300)
|..-++.+...|++|+++|.++++.+.+...+..... .+.+.++.+|+||.+.-
T Consensus 32 g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~ 111 (168)
T PF01262_consen 32 GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADIVIGNGL 111 (168)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHH
T ss_pred HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeecc
Confidence 5566777888999999999999988888776432111 23466788999997552
Q ss_pred -ChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 56 -SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 56 -~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
+......++.+ ..++. .+++.+|+|.|-
T Consensus 112 ~~~~~~P~lvt~--~~~~~--m~~gsvIvDis~ 140 (168)
T PF01262_consen 112 YWGKRAPRLVTE--EMVKS--MKPGSVIVDISC 140 (168)
T ss_dssp BTTSS---SBEH--HHHHT--SSTTEEEEETTG
T ss_pred cCCCCCCEEEEh--HHhhc--cCCCceEEEEEe
Confidence 22122223321 22333 346789999874
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.06 E-value=0.45 Score=41.42 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|..+|+.|+++||+|++..|+.+++.++.++
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 58999999999999999999999999988653
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.62 Score=43.53 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=37.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|+.|.+.|++|+++|++++.........-....+......++|+||.+.+.+
T Consensus 14 ~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 14 TGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 588999999999999999999876543211000011223344457899999988554
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.2 Score=41.62 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhh
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD 62 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~ 62 (300)
..+++.|.+.|.+|.+||..-..... . ......++.++++++|+|++++.++ +.++
T Consensus 336 ~~~~~~L~~~g~~v~~~DP~~~~~~~-~--~~~~~~~~~~~~~~ad~~v~~t~~~-~~~~ 391 (411)
T TIGR03026 336 LDIIELLKEKGAKVKAYDPLVPEEEV-K--GLPLIDDLEEALKGADALVILTDHD-EFKD 391 (411)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhhh-h--hcccCCCHHHHHhCCCEEEEecCCH-HHhc
Confidence 46789999999999999986433211 1 1223578889999999999999887 5443
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.67 Score=44.84 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++++|+.++...+.
T Consensus 92 IG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 92 VGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.66 Score=37.97 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=41.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-----CCCCCCHHHHhhcCCEEEEecCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g-----~~~~~~~~e~~~~adiVii~vp~ 56 (300)
|+.|.+-..+.||+|+..-||++++....... +-.-++..+.+..-|+||.+...
T Consensus 13 Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 13 GSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred HHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 78889999999999999999999987753221 11122345778899999998843
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.72 Score=41.93 Aligned_cols=79 Identities=25% Similarity=0.243 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-----CC--CCCCCHH-HHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-----GV--PTKETPF-EVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-----g~--~~~~~~~-e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
+|..+++.|.+. ++++. +.+++ +..+.+.+. +. ....+.. ...+++|+||+|+|+... .++... .
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-~~~v~~---a 88 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-MDLAPQ---L 88 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-HHHHHH---H
Confidence 477788888876 56765 45643 222222211 11 0122222 245789999999999844 444432 2
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
+ ..|..|||.|+..
T Consensus 89 ~-----~aG~~VID~S~~f 102 (343)
T PRK00436 89 L-----EAGVKVIDLSADF 102 (343)
T ss_pred H-----hCCCEEEECCccc
Confidence 2 2357999999755
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=2.3 Score=36.97 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred ChHHHHHHHHhCC---Ce-EEEEcCChhhHHHHHhCCCCCCCCHHHH-hhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G---~~-V~~~dr~~~~~~~~~~~g~~~~~~~~e~-~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||..++..|.+.+ ++ +.+++|++++.+.+... ...+.++++. ...+|+|+-|-+.. ++++.... +|..
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~-av~e~~~~---iL~~-- 85 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQ-AIAEHAEG---CLTA-- 85 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHH-HHHHHHHH---HHhc--
Confidence 5777777776532 44 45689999888888765 6778889996 58899999999654 88777643 4432
Q ss_pred CCCCeEEEEcCC---CCHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDSST---IDPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~st---~~p~~~~~~~~~~~~ 102 (300)
|.-++-.|. ..+...+++.+...+
T Consensus 86 ---g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 86 ---GLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred ---CCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 223333453 234455555555543
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.61 Score=41.20 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++|+-|++.|++|.+..|+++|++...++
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 69999999999999999999999999888654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.22 E-value=1.1 Score=38.89 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++.+.+
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999988776653
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=88.06 E-value=2.3 Score=40.11 Aligned_cols=60 Identities=22% Similarity=0.480 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
+|..+.++|.+.|| +|+.+|.+.+. + .|.....+.+|+-...|++++++|.. .+.+++.+
T Consensus 22 ~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i--~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~e 83 (447)
T TIGR02717 22 VGYAIMKNLIEGGYKGKIYPVNPKAGE---I--LGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVEE 83 (447)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCCCCc---c--CCccccCCHHHCCCCCCEEEEecCHH-HHHHHHHH
Confidence 47788899999998 57666655432 1 37788889999877899999999887 66677654
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.84 Score=41.10 Aligned_cols=53 Identities=25% Similarity=0.247 Sum_probs=37.8
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHH-----HHHh---CC----CCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMK-----MFSD---MG----VPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~-----~~~~---~g----~~~~~~~~e~~~~adiVii~v 54 (300)
||..+|..++..|+ +|.++|++++++. .... .+ +....+. +++++||+||++.
T Consensus 17 vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 17 IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 68999999999996 8999999998542 1111 11 1223444 6789999999977
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.92 Score=39.98 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=51.2
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC----CCC-CCCCHH--HHhhcCCEEEEecCChhhhhh---hhcCCCCc
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM----GVP-TKETPF--EVAEASDVVITMLPSSSHVLD---VYNGPNGL 70 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~----g~~-~~~~~~--e~~~~adiVii~vp~~~~~~~---v~~~~~~~ 70 (300)
+++++..|++.|. +++++||+.++++++.+. +.. ...... +...++|+||=|+|....-.. .+. ...
T Consensus 138 arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~--~~~ 215 (283)
T COG0169 138 ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVP--AEL 215 (283)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCCCCCCCc--HHh
Confidence 5788999999995 799999999999888664 211 111111 112269999999988744332 111 112
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
.++..++.|+--.+
T Consensus 216 -----l~~~~~v~D~vY~P 229 (283)
T COG0169 216 -----LPKGAIVYDVVYNP 229 (283)
T ss_pred -----cCcCCEEEEeccCC
Confidence 23457888865444
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.72 E-value=1.5 Score=45.49 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhCC-Ce-------------EEEEcCChhhHHHHHhC--CC---CC-CCCHHHH---hhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG-YK-------------MAVHDVNCNVMKMFSDM--GV---PT-KETPFEV---AEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G-~~-------------V~~~dr~~~~~~~~~~~--g~---~~-~~~~~e~---~~~adiVii~vp~~ 57 (300)
||+..++.|++.. ++ |.+.|+++++++++.+. ++ .. +.+.++. ++++|+|++|+|..
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCch
Confidence 6888899998753 33 88999999998887653 32 22 3454444 46899999999997
Q ss_pred hh
Q 022237 58 SH 59 (300)
Q Consensus 58 ~~ 59 (300)
-.
T Consensus 660 ~H 661 (1042)
T PLN02819 660 CH 661 (1042)
T ss_pred hh
Confidence 44
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=0.9 Score=41.03 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++++.+
T Consensus 19 IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 19 IGQATAEAFARRGARLVLAARDEEALQAVAE 49 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
|
| >PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=87.42 E-value=5.6 Score=30.94 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=49.4
Q ss_pred HHHHHHhCCCeEEEEcCChhhH----HHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 5 MASNLMKAGYKMAVHDVNCNVM----KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 5 la~~l~~~G~~V~~~dr~~~~~----~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
.+..|.+.||+|++=.-.-+.. ++..+.|+...++.++++.+||+|+-.-|.+. .++- . .++|+
T Consensus 19 ~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~--~e~~-----~-----l~~g~ 86 (136)
T PF05222_consen 19 DVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSE--EELA-----L-----LKPGQ 86 (136)
T ss_dssp HHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---G--GGGG-----G-----S-TTC
T ss_pred HHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCH--HHHh-----h-----cCCCc
Confidence 4678899999998754321221 34566799888888899999999988775531 1111 1 23557
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
+++- -..|....++.+.+..
T Consensus 87 ~li~--~~~~~~~~~~~~~l~~ 106 (136)
T PF05222_consen 87 TLIG--FLHPAQNKELLEALAK 106 (136)
T ss_dssp EEEE--E--GGGHHHHHHHHHH
T ss_pred EEEE--eeccccCHHHHHHHHH
Confidence 8773 3334344555555443
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A .... |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=87.37 E-value=0.67 Score=40.43 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=37.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--CCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|++.........+... .....+.+.++|+||-|..
T Consensus 10 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 10 IGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred hhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 589999999999999999999987654332111111 1233455667888877764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.3 Score=36.99 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=38.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCC-CCCCC-C-HHHHhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTKE-T-PFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~-~~~~~~~~g-~~~~~-~-~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
||...++.|.+.|++|++++++.. .+..+...+ +.... . ..+.+.++|+||.|+.++ ++...+
T Consensus 21 va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~-elN~~i 87 (202)
T PRK06718 21 VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP-RVNEQV 87 (202)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH-HHHHHH
Confidence 466778889999999999987642 344554443 11111 1 123457888888888776 444333
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=1.9 Score=37.68 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=53.5
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcC--ChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDV--NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr--~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..+++.+.+. +.++. ++++ +.++.......+....++.+++-.+.|+|+.|.|.. ...+.... .+..
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~~~---aL~a--- 84 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHVVP---ILKA--- 84 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHHHH---HHHc---
Confidence 688888888875 45543 4444 333333333335566778877745699999999887 54555432 3322
Q ss_pred CCCeEEEEcCCC---CHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTI---DPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~---~p~~~~~~~~~~~~ 102 (300)
+..+++ .|+. .+...+++.+..++
T Consensus 85 -Gk~Vvi-~s~~Al~d~~~~~~L~~~A~~ 111 (265)
T PRK13303 85 -GIDCAV-ISVGALADEALRERLEQAAEA 111 (265)
T ss_pred -CCCEEE-eChHHhcCHHHHHHHHHHHHH
Confidence 113444 3432 35445666666554
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.75 E-value=2.1 Score=40.72 Aligned_cols=82 Identities=11% Similarity=0.169 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHH--HHh--------------------CCCCCCCCHHHHhhcCCEEEEecCChhhh
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKM--FSD--------------------MGVPTKETPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~--~~~--------------------~g~~~~~~~~e~~~~adiVii~vp~~~~~ 60 (300)
..++..|.+.|.+|.+||.--...+. ... .+...+.++.++++++|+|++++..+ +.
T Consensus 347 ~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~-ef 425 (473)
T PLN02353 347 IDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILTEWD-EF 425 (473)
T ss_pred HHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEEEECCCCh-Hh
Confidence 46889999999999999976332211 110 01234557778999999999999887 55
Q ss_pred hhh-hcCCCCcccCCCCCCCeEEEEcCCCCH
Q 022237 61 LDV-YNGPNGLLQGGNSVRPQLLIDSSTIDP 90 (300)
Q Consensus 61 ~~v-~~~~~~~l~~~~~~~~~ivid~st~~p 90 (300)
+.+ +..+...+. +..+|+|+.++-.
T Consensus 426 ~~l~~~~~~~~m~-----~~~~viD~rn~l~ 451 (473)
T PLN02353 426 KTLDYQKIYDNMQ-----KPAFVFDGRNVLD 451 (473)
T ss_pred cccCHHHHHHhcc-----CCCEEEECCCCCC
Confidence 543 111111121 2248999888764
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.4 Score=37.91 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++++.|+++|++|++.+|++++.+.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 18 IGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988777654
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=86.60 E-value=0.87 Score=39.86 Aligned_cols=56 Identities=16% Similarity=0.018 Sum_probs=38.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC----CCCCCCHHHHh------hc-CCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPTKETPFEVA------EA-SDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g----~~~~~~~~e~~------~~-adiVii~vp~ 56 (300)
+|+.+++.|.+.|++|.+..|++++.....-.. ....+++.+++ +. +|.|+++.|.
T Consensus 11 iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 589999999999999999999987653211111 11123344555 45 8999988874
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.56 E-value=1 Score=40.50 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=39.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHh----C-----CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD----M-----GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~----~-----g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|+..|. ++.++|++.+++..... . ......+..+.+++||+||++...
T Consensus 17 vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 17 VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 48899999998887 79999999886543322 1 112223445678999999998754
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=86.43 E-value=1.9 Score=36.03 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.5
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVN 22 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~ 22 (300)
||+.+|..|++.|+ +++++|.+
T Consensus 32 lGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 32 LGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC
Confidence 69999999999999 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.41 E-value=1.5 Score=38.48 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=38.3
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+++++..|.+.|. +|+++||++++.+.+.+. +......+ ....+|+||=|+|-.
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 5788889999897 599999999999888654 21111111 124589999999854
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=1.6 Score=40.33 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
..+++.|.+.|.+|.+||..-.... ..+...++++.++++++|+|++.+-++ +++.+-
T Consensus 319 ~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 376 (388)
T PRK15057 319 QGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMAE-ELKDVA 376 (388)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCcH-HHHhhh
Confidence 4688999999999999998633332 236778899999999999999999776 766543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=1.5 Score=38.28 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 16 iG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred HHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 5899999999999999999999988776654
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=2.2 Score=40.88 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=28.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~ 35 (300)
|..-+..+...|.+|+++|+++++.+...+.|+.
T Consensus 177 GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 177 GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 5555666667799999999999999999888875
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=86.25 E-value=0.85 Score=40.54 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=38.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|+++....+...++. ...+..++++.+|+||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 12 VGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred hhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 58999999999999999999988765444322321 11234456677888887763
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=2 Score=37.24 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (274)
T PRK05693 13 IGRALADAFKAAGYEVWATARKAEDVEALAA 43 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766654
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.6 Score=38.55 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=39.5
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----CC--CCCCCH---HHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV--PTKETP---FEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g~--~~~~~~---~e~~~~adiVii~vp~~ 57 (300)
|++++..|++.|. +|+++||++++++.+.+. +. ....+. .+....+|+||=|+|-.
T Consensus 139 arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 139 GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 6788999999996 799999999999888653 11 011121 23456789888888755
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=85.85 E-value=0.75 Score=41.83 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=44.1
Q ss_pred hHHHHHHHHhCCCe---EEEE--cCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYK---MAVH--DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~---V~~~--dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|..+.+.|.+.+|+ +... .|+..+.-..............+.++++|+||+|+|.. ...++... ..
T Consensus 20 G~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~~~~~---~~----- 90 (344)
T PLN02383 20 GQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKKFGPI---AV----- 90 (344)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHHHHHH---HH-----
Confidence 77888889888884 3222 44443332221111111111224558999999999998 44444431 11
Q ss_pred CCCeEEEEcCCC
Q 022237 77 VRPQLLIDSSTI 88 (300)
Q Consensus 77 ~~~~ivid~st~ 88 (300)
..|..|||.|+.
T Consensus 91 ~~g~~VIDlS~~ 102 (344)
T PLN02383 91 DKGAVVVDNSSA 102 (344)
T ss_pred hCCCEEEECCch
Confidence 235789999873
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=1.9 Score=38.47 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 38 IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVPARRPDVAREALA 68 (315)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766543
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.26 E-value=1.4 Score=39.84 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++++.+.
T Consensus 20 IG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 20 VGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999988776654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=85.24 E-value=2.1 Score=40.24 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--CCCC----CCCHH----HHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--GVPT----KETPF----EVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--g~~~----~~~~~----e~~~~adiVii~vp~~ 57 (300)
+|..+++.|.+.|++|++.|+++++.+.+.+. +... ..+.. ..++++|.|+++.+++
T Consensus 242 ~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 47889999999999999999999999888764 2211 11222 1245888888888766
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.06 E-value=2.2 Score=40.28 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=37.6
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 53 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~ 53 (300)
|.+.|+.|.+.|++|+++|+++.....+...|+.......+.+.++|+||..
T Consensus 21 G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 21 GLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred HHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 6678999999999999999886655556666765433223445789988863
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=1.4 Score=38.42 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=28.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++++.|++.|++|++.+|++++++.+.+.
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 58899999999999999999999988777654
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=84.97 E-value=1.3 Score=36.95 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=29.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++|++|...|.+|+++.|+.+++++..+.
T Consensus 17 IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~ 48 (245)
T COG3967 17 IGLALAKRFLELGNTVIICGRNEERLAEAKAE 48 (245)
T ss_pred hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc
Confidence 68999999999999999999999999988765
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.91 E-value=3.1 Score=33.20 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=53.6
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-CCCC-CCH-HHHhhcCCEEEEecCChhhhhhhhcCC---CCccc---
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTK-ETP-FEVAEASDVVITMLPSSSHVLDVYNGP---NGLLQ--- 72 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g-~~~~-~~~-~e~~~~adiVii~vp~~~~~~~v~~~~---~~~l~--- 72 (300)
|...++.|.+.|++|++++ ++..+++.+.+ .... ..+ ++-++++|+||.++.++ ++...+... .....
T Consensus 25 a~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~-e~N~~i~~~a~~~~~vn~~d 101 (157)
T PRK06719 25 AYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH-AVNMMVKQAAHDFQWVNVVS 101 (157)
T ss_pred HHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCH-HHHHHHHHHHHHCCcEEECC
Confidence 5566788889999999995 44444444432 1111 111 23367899999999776 433322211 00000
Q ss_pred ---------CCCCCCCeEEE--EcCCCCHHHHHHHHHHHhh
Q 022237 73 ---------GGNSVRPQLLI--DSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 73 ---------~~~~~~~~ivi--d~st~~p~~~~~~~~~~~~ 102 (300)
+.....+.+.| -+++.+|..++++.+.+.+
T Consensus 102 ~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 102 DGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred CCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 00001223333 4445788888888877764
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.88 E-value=1.5 Score=38.83 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++++++.+
T Consensus 52 IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 52 IGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999888766643
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.71 E-value=2.5 Score=38.11 Aligned_cols=79 Identities=23% Similarity=0.231 Sum_probs=42.9
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-----CC---CC-CCCHHHH-hhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV---PT-KETPFEV-AEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g~---~~-~~~~~e~-~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
|.-|.+.|+.+.+ ++..+..+..+=..+.+. |. .. ..++++. .++||+||+|+|...+.+ .... +
T Consensus 15 G~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~s~~-~v~~---l 90 (349)
T COG0002 15 GLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGVSAE-LVPE---L 90 (349)
T ss_pred HHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchhHHH-HHHH---H
Confidence 5667777776543 666554433222222221 21 11 1233443 446999999999995544 3321 2
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
++ .+..|||+|+-.
T Consensus 91 ~~-----~g~~VIDLSadf 104 (349)
T COG0002 91 LE-----AGCKVIDLSADF 104 (349)
T ss_pred Hh-----CCCeEEECCccc
Confidence 32 235699999855
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.63 E-value=9.2 Score=36.18 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=37.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-----hHHHHHhCCCCCC--CCHHHHhhcCCEEEEec
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTK--ETPFEVAEASDVVITML 54 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-----~~~~~~~~g~~~~--~~~~e~~~~adiVii~v 54 (300)
|.++|+.|.+.|++|+++|+++. ...++.+.|+... ....+.+.++|+||.+.
T Consensus 26 G~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 26 NIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 67899999999999999998753 2244666676442 22345568899998874
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.5 Score=38.98 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=39.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|+..+. ++.++|++.+++... ... ......+..+.+++||+||++...
T Consensus 7 VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 7 VGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 48899999988876 699999988755322 221 122333456788999999998754
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=84.55 E-value=2.5 Score=36.07 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=49.6
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHh----CCCC---CCCCHHHHhh---cCCEEEEe-----cCChhhhhhhhcC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSD----MGVP---TKETPFEVAE---ASDVVITM-----LPSSSHVLDVYNG 66 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~----~g~~---~~~~~~e~~~---~adiVii~-----vp~~~~~~~v~~~ 66 (300)
|+.|+..+++.|.+|++.|.+++.++-... .|+. ...+.+|... .=|+|+++ ||++.. ++..
T Consensus 70 gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~---~~~~ 146 (243)
T COG2227 70 GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPES---FLRA 146 (243)
T ss_pred ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHH---HHHH
Confidence 678999999999999999999988765542 2433 2234455443 46887764 677754 3333
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 022237 67 PNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st~~ 89 (300)
...++ .|+|.+++ ||+-
T Consensus 147 c~~lv----kP~G~lf~--STin 163 (243)
T COG2227 147 CAKLV----KPGGILFL--STIN 163 (243)
T ss_pred HHHHc----CCCcEEEE--eccc
Confidence 33344 34554544 5544
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.11 E-value=2 Score=37.20 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 17 IGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5889999999999999999999988776543
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.02 E-value=32 Score=31.00 Aligned_cols=234 Identities=15% Similarity=0.133 Sum_probs=120.5
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCC-CcccCCCCCCCeEEEEcCCCCHH-HHHHHHHHHhhhh-hhhccCCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPN-GLLQGGNSVRPQLLIDSSTIDPQ-TSRNISAAVSNCI-LKEKKDSWEN 114 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~-~~l~~~~~~~~~ivid~st~~p~-~~~~~~~~~~~~~-~~~~~~~~~~ 114 (300)
.+++++..+=+.+|+|||.+ +-.+|+.++. +.++. -+ ++|+-.+|.... ..+.....+..-. +.+-..+...
T Consensus 77 kd~a~~~~dwqtlilav~aD-aY~dvlqqi~~e~L~~---vk-~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~d 151 (431)
T COG4408 77 KDLAQAVGDWQTLILAVPAD-AYYDVLQQIPWEALPQ---VK-SVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYAD 151 (431)
T ss_pred hhHHHhhchhheEEEEeecH-HHHHHHhcCCHhHhcc---cc-EEEEecccccccHHHHHHHhhhCCCceEEEeehhccc
Confidence 46677778889999999998 7788888763 22322 12 233333333322 2233222221100 0000001112
Q ss_pred ceEEEeccCCCh-HhhhcCceEEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHH-------------------
Q 022237 115 PVMLDAPVSGGV-LAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA------------------- 171 (300)
Q Consensus 115 ~~~~~~pv~g~~-~~~~~g~~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~------------------- 171 (300)
.++++..-.... ..+.+. .++.|. +....+.+..+++..|-.+..+.++-.|+.-
T Consensus 152 Tk~id~~~p~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~a 229 (431)
T COG4408 152 TKYIDAEQPNRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQA 229 (431)
T ss_pred ceeecccCcchHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHH
Confidence 233332111100 011111 244443 4566678888888888665555543322211
Q ss_pred ------------H-----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC--------CccccccCCCCCCc
Q 022237 172 ------------K-----ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--------RCWSSDSYNPVPGV 226 (300)
Q Consensus 172 ------------k-----~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~--------~s~~~~~~~~~~~~ 226 (300)
| -+..+++.-+.....|.+++..+.|+.+-.+++.++..-. ..+. +.+...+..
T Consensus 230 if~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dI-d~F~~~~~i 308 (431)
T COG4408 230 IFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDI-DEFPQLPPI 308 (431)
T ss_pred HhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccch-hhcccCChH
Confidence 1 1233444445677899999999999998888888875510 0010 111111111
Q ss_pred ccC--------------C--C-CCC-CCCC---Cc-----------chh----hHHHHHHHHHHHHHHcCCCchHHHHHH
Q 022237 227 MEG--------------V--P-ASR-NYGG---GF-----------ASK----LMAKDLNLALASAKEVGVDCPLTSQAQ 270 (300)
Q Consensus 227 ~~~--------------~--~-~~~-~~~~---~~-----------~~~----~~~kd~~~~~~~a~~~g~~~~~~~~~~ 270 (300)
.+. - . +.| -|+. .| .+. +-..-+..+..++..+++.||..+...
T Consensus 309 ~QeYlLfVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~l 388 (431)
T COG4408 309 EQEYLLFVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLL 388 (431)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 110 0 0 011 1110 01 011 122336889999999999999999999
Q ss_pred HHHHHHHHc
Q 022237 271 DIYAKLCEN 279 (300)
Q Consensus 271 ~~~~~a~~~ 279 (300)
..|+.|+++
T Consensus 389 t~ye~a~k~ 397 (431)
T COG4408 389 TRYEQALKA 397 (431)
T ss_pred HHHHHHHHH
Confidence 999999884
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.01 E-value=1.5 Score=37.47 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|.+.|++|++.+|++++.+.+.
T Consensus 16 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.81 E-value=12 Score=33.67 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=55.5
Q ss_pred CCCeEE-EEcCChhhHHHHHhC-CC---CCCCCHHHHhhcC--CEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEE
Q 022237 12 AGYKMA-VHDVNCNVMKMFSDM-GV---PTKETPFEVAEAS--DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID 84 (300)
Q Consensus 12 ~G~~V~-~~dr~~~~~~~~~~~-g~---~~~~~~~e~~~~a--diVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid 84 (300)
++|+|. ++||+.+++.++.+. ++ +...+.+|.+++. |+|.+..|.+...+-+.. .+. .+..++++
T Consensus 31 s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l----~l~----~~K~VL~E 102 (351)
T KOG2741|consen 31 SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVML----ALN----KGKHVLCE 102 (351)
T ss_pred cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHH----HHH----cCCcEEec
Confidence 367755 679999999888775 33 5678999999865 999999999977665543 222 12235554
Q ss_pred cC-CCCHHHHHHHHHHHhh
Q 022237 85 SS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 85 ~s-t~~p~~~~~~~~~~~~ 102 (300)
-= .....+++++.+..+.
T Consensus 103 KPla~n~~e~~~iveaA~~ 121 (351)
T KOG2741|consen 103 KPLAMNVAEAEEIVEAAEA 121 (351)
T ss_pred ccccCCHHHHHHHHHHHHH
Confidence 22 2445666777666654
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.79 E-value=2.1 Score=36.53 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=26.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|.+.|++|++.+|++++++.+.+
T Consensus 12 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 12 FGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4889999999999999999999988766643
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=1.9 Score=36.90 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|+++..+.+.
T Consensus 23 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 23 LGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999987766553
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=83.65 E-value=1.8 Score=39.95 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=46.6
Q ss_pred hHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCC-------CCCCCCHH-HHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 2 GFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VPTKETPF-EVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 2 G~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~-e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
|..|.+.|.++ .++|..+.+++..-+.+.... .....+.+ +.++++|+||+|+|.. ...++... +.
T Consensus 51 G~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-~s~~i~~~----~~ 125 (381)
T PLN02968 51 GAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-TTQEIIKA----LP 125 (381)
T ss_pred HHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-HHHHHHHH----Hh
Confidence 67788888877 568887766544332222111 11111122 2258899999999987 55555532 21
Q ss_pred CCCCCCCeEEEEcCCCC
Q 022237 73 GGNSVRPQLLIDSSTID 89 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~ 89 (300)
.+..|||.|+..
T Consensus 126 -----~g~~VIDlSs~f 137 (381)
T PLN02968 126 -----KDLKIVDLSADF 137 (381)
T ss_pred -----CCCEEEEcCchh
Confidence 236899999744
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=2.4 Score=39.89 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=39.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh-hhH----HHHHhCCCCC--CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC-NVM----KMFSDMGVPT--KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~-~~~----~~~~~~g~~~--~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|+.|++.|++|+++|++. +.+ +++.+.|... .....+....+|+||.+.-.
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 47899999999999999999985 333 3344445432 22334556789999998743
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=83.61 E-value=2.5 Score=37.72 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhCCC-eEE-EEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGY-KMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
.|.-|.+.|..+.+ ++. +..++. + . ..+.++.++++|++|+|+|...+ .+.... +. ..
T Consensus 13 ~G~el~rlL~~HP~~el~~l~s~~~-----~-----~-~~~~~~~~~~~D~vFlalp~~~s-~~~~~~---~~-----~~ 72 (310)
T TIGR01851 13 TGLQIRERLSGRDDIELLSIAPDRR-----K-----D-AAERAKLLNAADVAILCLPDDAA-REAVSL---VD-----NP 72 (310)
T ss_pred hHHHHHHHHhCCCCeEEEEEecccc-----c-----C-cCCHhHhhcCCCEEEECCCHHHH-HHHHHH---HH-----hC
Confidence 37778888887643 333 333321 1 1 12455666899999999999844 444432 11 23
Q ss_pred CeEEEEcCC
Q 022237 79 PQLLIDSST 87 (300)
Q Consensus 79 ~~ivid~st 87 (300)
|..|||.|+
T Consensus 73 g~~VIDlSa 81 (310)
T TIGR01851 73 NTCIIDAST 81 (310)
T ss_pred CCEEEECCh
Confidence 478999997
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.52 E-value=2.6 Score=39.36 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=41.3
Q ss_pred HHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhh
Q 022237 3 FRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD 62 (300)
Q Consensus 3 ~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~ 62 (300)
..+++.|.+.| .+|.+||..-.......... ....++.++++++|+|+++++.+ +.++
T Consensus 343 ~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~-~~~~~~~~~~~~ad~vvi~t~~~-~~~~ 401 (415)
T PRK11064 343 MEIAELIAQWHSGETLVVEPNIHQLPKKLDGL-VTLVSLDEALATADVLVMLVDHS-QFKA 401 (415)
T ss_pred HHHHHHHHhcCCcEEEEECCCCCchhhhccCc-eeeCCHHHHHhCCCEEEECCCCH-Hhcc
Confidence 46889999996 99999998643322211111 23468889999999999999887 5553
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=11 Score=34.02 Aligned_cols=86 Identities=17% Similarity=0.301 Sum_probs=53.2
Q ss_pred HHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 7 SNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 7 ~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
..+.+. +.++. ++|++++++.. .. +...+.+.++.++ +.|+|++|+|+....+-+.. .++. +.++
T Consensus 22 ~~~~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~----al~a----GkhV 91 (346)
T PRK11579 22 PLIAGTPGLELAAVSSSDATKVKA--DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA----ALEA----GKHV 91 (346)
T ss_pred HHHhhCCCCEEEEEECCCHHHHHh--hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC----CCeE
Confidence 334443 56765 68999887642 22 4456789999986 57999999999876655443 2221 2245
Q ss_pred EEEcC-CCCHHHHHHHHHHHhh
Q 022237 82 LIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 82 vid~s-t~~p~~~~~~~~~~~~ 102 (300)
+++-- .....+++++.+..++
T Consensus 92 l~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 92 VVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 55522 3455666777666654
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.35 E-value=2.5 Score=35.49 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|+++..+.+.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 589999999999999999999988766554
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=83.34 E-value=1.4 Score=39.63 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++++|++++++++.+
T Consensus 65 IG~alA~~La~~G~~Vil~~R~~~~l~~~~~ 95 (320)
T PLN02780 65 IGKGFAFQLARKGLNLVLVARNPDKLKDVSD 95 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998876643
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=83.24 E-value=1.7 Score=37.13 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+++.
T Consensus 14 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999987766554
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=3.1 Score=39.77 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=40.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHhhcCCEEEEecC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLP 55 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~~~e~~~~adiVii~vp 55 (300)
|.+.++.|.+.|++|+++|+++...+.+.+.|+... ....+.++++|+||.+-.
T Consensus 24 G~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG 79 (488)
T PRK03369 24 GRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG 79 (488)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC
Confidence 677788888999999999988777766666676442 223455678999998763
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=82.95 E-value=2.7 Score=36.04 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=25.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|+.+++.|+++||+|++..|++++....
T Consensus 29 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 29 TGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 58999999999999999999998876554
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.91 E-value=4.5 Score=36.38 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=69.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
+|+-.|+++..-|-.|+.||. .+.. ...+.|+.. .+.+|+...||.|-+-+|-..+.+.++... .+.. .++|
T Consensus 157 IGseVA~r~k~~gm~vI~~dpi~~~~--~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~T~~lin~~--tfA~--mKkG 229 (406)
T KOG0068|consen 157 IGSEVAVRAKAMGMHVIGYDPITPMA--LAEAFGVQL-VSLEEILPKADFITLHVPLTPSTEKLLNDE--TFAK--MKKG 229 (406)
T ss_pred chHHHHHHHHhcCceEEeecCCCchH--HHHhcccee-eeHHHHHhhcCEEEEccCCCcchhhccCHH--HHHH--hhCC
Confidence 588899999988888888864 3332 333446555 589999999999999999887888777642 3433 4677
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..||++|-........+-+.+..
T Consensus 230 VriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 230 VRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred cEEEEecCCceechHHHHHHHhc
Confidence 89999997766666666665543
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=82.80 E-value=1.1 Score=36.84 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=30.0
Q ss_pred eEEEEcCChhhHHHHHh--------CCC----CCCCCHHHHhhcCCEEEEecCCh
Q 022237 15 KMAVHDVNCNVMKMFSD--------MGV----PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~--------~g~----~~~~~~~e~~~~adiVii~vp~~ 57 (300)
++.++|+++++++.... .|. ..++|.+++++++|.||.++-..
T Consensus 30 ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 30 EIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TT
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 78999999998864422 232 34779999999999999998554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=82.66 E-value=2.3 Score=38.14 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=37.7
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC----C---CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM----G---VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~----g---~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|+..|. ++.++|++++++... ... . +....+.++ +++||+||++...
T Consensus 14 VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 14 VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 48889999988876 799999988765322 111 1 122345554 7999999997743
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=6.4 Score=36.94 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=37.5
Q ss_pred ChHHHHHHHHhC--------C--Ce-EEEEcCChhhHHHHHhCCCCCCCCHHHHhh--cCCEEEEecCCh
Q 022237 1 MGFRMASNLMKA--------G--YK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~--------G--~~-V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~ 57 (300)
||+.+++.|.++ | .+ +.++||++++...+...+...+.+.++.++ +.|+|+.|++..
T Consensus 14 VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 14 VGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 466776666543 3 34 446799988765432234456778888885 479999998654
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=82.31 E-value=6.7 Score=37.53 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCCC--C
Q 022237 167 NGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNY--G 237 (300)
Q Consensus 167 ~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~--~ 237 (300)
....+.-+.+++....+.+.+|++.+.++ +++|..++.++++.|+ ..||+++..... +.....-.++ .
T Consensus 326 ~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a---~~~~~~l~~l~~~ 402 (493)
T PLN02350 326 KKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKA---YDRNPDLASLLVD 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHH---HHcCCChhhhcCC
Confidence 45677788899999999999999999883 3699999999999987 577776532211 0000000011 1
Q ss_pred CCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 238 GGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 238 ~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
+.|. +.....+.+.++..+-+.|+|+|.+.+....|+.....-+..
T Consensus 403 ~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~ 450 (493)
T PLN02350 403 PEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPA 450 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccH
Confidence 1121 234555678899999999999999999999777666554443
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=1.8 Score=37.44 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++|+.|++.|++|++.+|++++.+++.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 20 IGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 689999999999999999999988776654
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.10 E-value=2.6 Score=40.70 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=38.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC--CCCHHHHh-hcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEVA-EASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~e~~-~~adiVii~vp~~ 57 (300)
+|++++..|++.|.+|+++||+.++++.+.+. +... ..+..+.. ..+|+|+-++|-.
T Consensus 390 agrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 390 AGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence 47899999999999999999999998888653 2111 11111111 2457777666654
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=82.09 E-value=1.4 Score=37.40 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=24.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
||.++|+.|++.|++|++.+|++++.
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~~~~ 33 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNEEKL 33 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 58999999999999999999999974
|
... |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.82 E-value=2.1 Score=36.77 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 24 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 24 LGLQIAEALGEAGARVVLSARKAEELEEAA 53 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=81.59 E-value=2.8 Score=37.52 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=36.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCCh--hhHHH----HHh----CCC----CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNC--NVMKM----FSD----MGV----PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~--~~~~~----~~~----~g~----~~~~~~~e~~~~adiVii~vp~ 56 (300)
.|..++..|+..|+ +|+++||++ ++++. +.+ .+. ....+ .+.++++|+||+|+..
T Consensus 12 vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViitag~ 82 (309)
T cd05294 12 VGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIITAGV 82 (309)
T ss_pred HHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEecCC
Confidence 37889999999987 499999965 43321 111 121 12234 4568999999999964
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.50 E-value=4.4 Score=33.93 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=37.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
+|..+++.|+++|++|++.+|++++..+..+. .. ....+++..-+.+..+++.++.+
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 19 LGRATAAWLAARGARVALIGRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred HhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHHHHHH
Confidence 58899999999999999999998776544321 00 01234444555555566555543
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.48 E-value=2.8 Score=39.40 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=37.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh----HHHHHhCCCCCC--CCHHHHhhc-CCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTK--ETPFEVAEA-SDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~----~~~~~~~g~~~~--~~~~e~~~~-adiVii~v 54 (300)
+|.+.|+.|++.|++|+++|+++.. .+.+.+.|.... ....+.... .|+||...
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 4888999999999999999987532 344555565432 234454444 89888865
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=2.9 Score=36.20 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 19 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 19 IGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 589999999999999999999987765553
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.26 E-value=3.1 Score=35.15 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=25.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+++.
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~ 48 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLARTEENLKAVA 48 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999988766553
|
|
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=81.18 E-value=3.7 Score=31.08 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 022237 179 MAVSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 256 (300)
Q Consensus 179 ~~~~~~~~~Ea~~l~~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a 256 (300)
.......+.|+.+++++.|++ .+.+.+.+........ ...+.+.+ |+..+-. -+...=...+++.+
T Consensus 37 ~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~-----~~~~SM~~------D~~~gr~-tEid~i~G~vv~~a 104 (125)
T PF08546_consen 37 RELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP-----DNRSSMLQ------DIEAGRP-TEIDYINGYVVRLA 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT-----TT--HHHH------HHHTTB---SHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC-----CccccHHH------HHHHccc-ccHHHHHHHHHHHH
Confidence 344558889999999999954 4434444332210000 00111221 1111111 11222258899999
Q ss_pred HHcCCCchHHHHHHHHHHH
Q 022237 257 KEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~ 275 (300)
+++|+++|..+.++++++.
T Consensus 105 ~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 105 KKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HHTT---HHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHHHHHHH
Confidence 9999999999999988764
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=2 Score=36.47 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|..+++.|++.|++|++.+|++++.+++.+.
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 58899999999999999999999888777543
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.05 E-value=3 Score=35.24 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=26.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 21 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 21 IGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999887766643
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=81.01 E-value=2.9 Score=35.19 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|.++|++|++.+|++++.+.+.
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 488999999999999999999988765543
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=80.96 E-value=4 Score=34.05 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.7
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCN 24 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~ 24 (300)
+|+.+++.|++.|. +++++|.+.-
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEE
Confidence 48899999999997 7999998743
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=80.76 E-value=5.7 Score=35.11 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=49.5
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhH--HHHHhCCCCC-CCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVM--KMFSDMGVPT-KETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~--~~~~~~g~~~-~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||..++..+.+. ++++. ++|+++++. ....+.|... ..+.++.++ +.|+|++|+|+....+.... .+
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a~~----al-- 85 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHARL----LA-- 85 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HH--
Confidence 355566666653 45655 679988763 3444457654 446777775 57889999999855443331 12
Q ss_pred CCCCCCeEEEEcCCCC
Q 022237 74 GNSVRPQLLIDSSTID 89 (300)
Q Consensus 74 ~~~~~~~ivid~st~~ 89 (300)
..|+.++|.+...
T Consensus 86 ---~aGk~VIdekPa~ 98 (285)
T TIGR03215 86 ---ELGKIVIDLTPAA 98 (285)
T ss_pred ---HcCCEEEECCccc
Confidence 2346777766544
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.55 E-value=2.1 Score=36.90 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 18 IGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999887766643
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.40 E-value=4.4 Score=35.96 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=35.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH---HHHhC-----C-------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK---MFSDM-----G-------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~---~~~~~-----g-------~~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.++||+|.+.+|+++... .+... . +.......++++++|+||-+..
T Consensus 16 IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 16 IASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeCC
Confidence 589999999999999999988765432 22111 1 1111234566778888887763
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.39 E-value=2.4 Score=35.94 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|.+.+|++++++++.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 17 LGRTISCHFARLGATLILCDQDQSALKDTYE 47 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=1.6 Score=39.56 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=44.6
Q ss_pred hHHHHHHHHhCCCeE---EEEcCChhhHHHHHhCC--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V---~~~dr~~~~~~~~~~~g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|..+.+.|.+.||++ ....++.+.-+.+.-.+ ....+...+.++++|+||+|+|.. ..+++... +++
T Consensus 14 G~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~~~---~~~---- 85 (334)
T PRK14874 14 GREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYAPK---AAA---- 85 (334)
T ss_pred HHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHHHH---HHh----
Confidence 788999999988853 55544333222221112 112111123347899999999987 44455432 222
Q ss_pred CCCeEEEEcCCC
Q 022237 77 VRPQLLIDSSTI 88 (300)
Q Consensus 77 ~~~~ivid~st~ 88 (300)
.|..|||.|+.
T Consensus 86 -~G~~VIDlS~~ 96 (334)
T PRK14874 86 -AGAVVIDNSSA 96 (334)
T ss_pred -CCCEEEECCch
Confidence 34689998874
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=2.2 Score=35.90 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++.+.+
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=80.09 E-value=3.8 Score=37.05 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=36.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C-----------CCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-----------VPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g-----------~~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+++.|++.|++|++.+|+++....+... + +....+..++++++|.||-+.
T Consensus 17 IGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A 85 (351)
T PLN02650 17 IGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA 85 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence 58999999999999999998887655432210 1 111223456677888888765
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.03 E-value=12 Score=34.01 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=51.2
Q ss_pred CCeEE-EEcCChhhHHHHHhCC-CCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC-C
Q 022237 13 GYKMA-VHDVNCNVMKMFSDMG-VPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-T 87 (300)
Q Consensus 13 G~~V~-~~dr~~~~~~~~~~~g-~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s-t 87 (300)
+++|. ++|+++++.+...+.+ ....++.++.++ +.|+|++|+|+....+-+.. .++. +.+++++-= .
T Consensus 27 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~----al~a----GkhVl~EKPla 98 (344)
T PRK10206 27 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKR----ALEA----GKNVLVEKPFT 98 (344)
T ss_pred CEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHH----HHHc----CCcEEEecCCc
Confidence 45664 6899987653333344 556788999985 67999999999866554443 2221 124555421 2
Q ss_pred CCHHHHHHHHHHHhh
Q 022237 88 IDPQTSRNISAAVSN 102 (300)
Q Consensus 88 ~~p~~~~~~~~~~~~ 102 (300)
....+.+++.+..++
T Consensus 99 ~~~~ea~~l~~~a~~ 113 (344)
T PRK10206 99 PTLAEAKELFALAKS 113 (344)
T ss_pred CCHHHHHHHHHHHHH
Confidence 345666777666654
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=80.01 E-value=5.2 Score=32.49 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~ 23 (300)
||+.++..|++.|. +++++|.+.
T Consensus 10 lGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 10 LGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999998 599999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 300 | ||||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 5e-75 | ||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 6e-75 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 4e-41 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 5e-41 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 6e-35 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 7e-30 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 1e-29 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 6e-29 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 2e-26 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 8e-25 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 1e-23 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 2e-22 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 3e-22 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 3e-16 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 5e-10 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 5e-09 |
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-134
Identities = 146/297 (49%), Positives = 185/297 (62%), Gaps = 12/297 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NLMK GY + ++DV + K F D G +P +VAE +D +ITMLP+S +
Sbjct: 11 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINA 70
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V V +DA
Sbjct: 71 IEAYSGANGILKKVK--KGSLLIDSSTIDPAVSKELAKEVEK----------MGAVFMDA 118
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAKICNN+ +A
Sbjct: 119 PVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLA 178
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240
+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF
Sbjct: 179 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 238
Query: 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 297
+ LMAKDL LA SA L S A IY +C G+ KDFS VFQ +
Sbjct: 239 GTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 327 bits (842), Expect = e-113
Identities = 99/294 (33%), Positives = 148/294 (50%), Gaps = 20/294 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+K G + D+ + G E +VA ASD++ T LP++ V
Sbjct: 15 MGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIV 74
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
V NGP G+L + +++D S++ P ++ ++ EK +D
Sbjct: 75 ETVMNGPGGVLSA---CKAGTVIVDMSSVSPSSTLKMAKV-----AAEK-----GIDYVD 121
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSGG AEAGTLT MVG SE ++ +P+ +GK+ + G G G A KI NNL +
Sbjct: 122 APVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLL 181
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
+M ++EAL LG G+ T+ +I+ SS R ++ ++ ME S ++ GG
Sbjct: 182 GCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKFIMSGDFAGG 235
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
FA L KDL LAL + KE V P+T+ A I+ G +D S V + +
Sbjct: 236 FAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVW 289
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = e-108
Identities = 74/286 (25%), Positives = 120/286 (41%), Gaps = 17/286 (5%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA+ + + + V+D+ M ++ G ++ +VA A + IT+L + V
Sbjct: 26 MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVLDDA-QV 84
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G + G ++ STI T+ ++ LK + + ++DA
Sbjct: 85 REVVGELAGHAKPG-----TVIAIHSTISDTTAVELARD-----LKAR-----DIHIVDA 129
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
PVSGG AA G L MVG + Y+ KP F I+ G G G K+ N+
Sbjct: 130 PVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTF 189
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GGG 239
S EA+ L ++ G+ L +++ + A + + + P + Y
Sbjct: 190 TSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFL 249
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 285
L KDL+LALA + V VD PL A + A H K+
Sbjct: 250 HTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = e-101
Identities = 103/294 (35%), Positives = 148/294 (50%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG M+ NL+KAGY + V D N + G T T +AE DV+ITMLP+S HV
Sbjct: 16 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHV 75
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
+V G NG+++G +P +LID S+I P SR IS A LK K MLD
Sbjct: 76 KEVALGENGIIEG---AKPGTVLIDMSSIAPLASREISDA-----LKAK-----GVEMLD 122
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSGG A GTL+ MVGG + + L +M + ++ G G G K+ N + +
Sbjct: 123 APVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIV 182
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
A+++ +SEALTL G++ + + + A D+ P + RN+ G
Sbjct: 183 ALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPG 235
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F L KDL AL ++ VG PLT+ ++ L +GH + D S + +Y
Sbjct: 236 FRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYY 289
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = e-100
Identities = 86/294 (29%), Positives = 131/294 (44%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL+KAG + + + + + + +G TP EV E+ V ML +
Sbjct: 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAA 71
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
+V G +G+L+G + + +D ST+DP TS+ I A + K L+
Sbjct: 72 EEVCFGKHGVLEG---IGEGRGYVDMSTVDPATSQRIGVA-----VVAK-----GGRFLE 118
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSG AE GTL + G + Y A P F MGK I+ G G GA K+ N+ M
Sbjct: 119 APVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVM 178
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
M E L LG+ G++ + ++ + + + RN+
Sbjct: 179 GGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGG-------LIRDRNFAPA 231
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F K M KDL LA+A VG ++ A +++ G +DFS +F+ Y
Sbjct: 232 FPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTY 285
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 288 bits (740), Expect = 8e-98
Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 26/294 (8%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG+ MA +L + + + ++ + G + P E + V+ T LP++ V
Sbjct: 12 MGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEARVIFTCLPTTREV 69
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
+V L +R +D+++ +P+ SR ++ L+EK LD
Sbjct: 70 YEVAEA---LYPY---LREGTYWVDATSGEPEASRRLAER-----LREK-----GVTYLD 113
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSGG AEAGTLT M+GG E+A + +P L+ K ++ G G G A K NN +
Sbjct: 114 APVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVGPVGAGHAVKAINNALL 172
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
AV++ E L G+SA +++N+SS R ++++ P +R +
Sbjct: 173 AVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR------VLTRAFPKT 226
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
FA L+ KDL +A+ PL A+++Y D +
Sbjct: 227 FALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLL 280
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 287 bits (737), Expect = 2e-97
Identities = 83/294 (28%), Positives = 133/294 (45%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA+NL++AG+ + V + N +G +P EV A D+ I ML +
Sbjct: 12 MGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAA 71
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
+V G NG+L+G + + ID ST+D +TS I AA + + L+
Sbjct: 72 REVCFGANGVLEG---IGGGRGYIDMSTVDDETSTAIGAA-----VTARGGR-----FLE 118
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSG AE GTL + G + + A P F ++GK ++ G G GA K+ N+ M
Sbjct: 119 APVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIM 178
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
M + E + LG++ G+ L ++L++ + + S +
Sbjct: 179 GQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQ-------MLLSGEFPTS 231
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F K M KDL LA+ +G + A + + + GH +DF+ VF+
Sbjct: 232 FPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVL 285
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 1e-96
Identities = 75/296 (25%), Positives = 127/296 (42%), Gaps = 23/296 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTKETPFEVAEASDVVITMLPSSSH 59
MG A + ++AG D+N G + E A D ++ ++ +++
Sbjct: 18 MGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQ 77
Query: 60 VLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 118
V V G +G+ ++P ++ SSTI ++ I+AA L N ML
Sbjct: 78 VRQVLFGEDGVAHL---MKPGSAVMVSSTISSADAQEIAAA-----LTAL-----NLNML 124
Query: 119 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNL 177
DAPVSGG + A G +T M GSE A+ KP+ ++ N G G+ KI + L
Sbjct: 125 DAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQL 184
Query: 178 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYG 237
V + +EA+ L GI + ++ ++ W + N + V++ +Y
Sbjct: 185 LAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFE--NRMQHVVD-----GDYT 237
Query: 238 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
A + KDL L +AK + PL S A +++ G+ +D S V + +
Sbjct: 238 PRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIF 293
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 3e-91
Identities = 79/294 (26%), Positives = 120/294 (40%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG + SNL+K G+ + V + +F G TP EV D+ +
Sbjct: 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAA 100
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
D+ GP+G+LQG +RP + +D ST+D T ++ + + L+
Sbjct: 101 KDLVLGPSGVLQG---IRPGKCYVDMSTVDADTVTELAQV-----IVSRGGR-----FLE 147
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSG + G L + G Y+ F +MGK + + G GN A + N+
Sbjct: 148 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 207
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
M ++E LTL Q G S TL ILN D + N+
Sbjct: 208 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ---NI----LQGNFKPD 260
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F K + KDL LA+A V P+ + A ++Y + D S V++ Y
Sbjct: 261 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 271 bits (695), Expect = 1e-90
Identities = 84/294 (28%), Positives = 123/294 (41%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG M+ NL+K G+K+ V + + + G E+P EV + I ML
Sbjct: 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAA 91
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
L V G+L+ + + ID ST+D +TS I+ A + K ++
Sbjct: 92 LSVVFDKGGVLEQ---ICEGKGYIDMSTVDAETSLKINEA-----ITGKGGR-----FVE 138
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
PVSG AE G L + G + ++ + P F +GK + Y G GNGA K+ N+ M
Sbjct: 139 GPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIM 198
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
M SE L L G+S+ TL IL+ + P +Y
Sbjct: 199 GSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGP-------SMNKSSYPPA 251
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F K KD+ LALA E V P+ + A + + K G DFS V +
Sbjct: 252 FPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAV 305
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 264 bits (678), Expect = 2e-88
Identities = 88/294 (29%), Positives = 136/294 (46%), Gaps = 22/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA NL +AG+++ V + V +G ET +V E +D++ M+P + V
Sbjct: 14 MGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQV 72
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
DV G +G + + ++D S+I P ++ + + E LD
Sbjct: 73 EDVLFGEHGCAKT---SLQGKTIVDMSSISPIETKRFAQR-----VNEM-----GADYLD 119
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
APVSGG + A GTL+ MVGG + + KPLF +GKN GG G+G K+ N + +
Sbjct: 120 APVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIV 179
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
A+++ VSEAL G + + L A + + +R + G
Sbjct: 180 ALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMINRTFEPG 232
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
F L KDLNLAL SAK + ++ P T+ Q+++ NG D S + Q
Sbjct: 233 FKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQAL 286
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 3e-80
Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 23/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA L +AGY + V + + +G E A +D+V++ML + + V
Sbjct: 42 MGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVV 101
Query: 61 LDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
DV G+ ++P L +D ++I P+ +R+ +A L + LD
Sbjct: 102 QDVLFA-QGVAAA---MKPGSLFLDMASITPREARDHAAR-----LGALGIA-----HLD 147
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179
PVSGG + AE GTL M GG ++ + PL G+ + G G+G K+ N + +
Sbjct: 148 TPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR-ATHVGPHGSGQLTKLANQMIV 206
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG 239
+++ V+EAL G + + + + A + M R++
Sbjct: 207 GITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ---RM----VERDFAPR 259
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
+ KD+ ALA+A+E+G D P+T + +YA+ E+G D S +F
Sbjct: 260 ARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVEL 313
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 6e-74
Identities = 41/294 (13%), Positives = 95/294 (32%), Gaps = 21/294 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA L+K G ++A+ + + G E+ AS I +L +
Sbjct: 20 MGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHAT 79
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G G+ + + + ++D +T + + + +
Sbjct: 80 HEVL-GMPGVARA---LAHRTIVDYTTNAQDEGLALQGL-----VNQA-----GGHYVKG 125
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA 180
+ + G +A++ + L + +T++ A A + +
Sbjct: 126 MIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAH-AF 184
Query: 181 VSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GGG 239
+M+ EA+ G G+ S ++L +S + ++++ G
Sbjct: 185 AAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVA-----DALEEAVRRLETQDFKGDQ 239
Query: 240 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293
+ A S GV P+ + + G+ +D + + +
Sbjct: 240 ARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSF 293
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 2e-49
Identities = 52/290 (17%), Positives = 92/290 (31%), Gaps = 31/290 (10%)
Query: 1 MGFRMASNLMKAG-YKMAVHDVNCN--VMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 57
+AS L +AG MA +D ++GV K + EVA DV+ +++ +
Sbjct: 35 AASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQ 94
Query: 58 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 117
+ + L +G L D ++ P R I +S +
Sbjct: 95 AALEVAQQAGPHLCEG------ALYADFTSCSPAVKRAIGDVIS--------RHRPSAQY 140
Query: 118 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 177
V V G +V + A + L + + G G A K+C +
Sbjct: 141 AAVAVMSAV--KPHGHRVPLVVDGDGARRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSA 198
Query: 178 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYG 237
+ EAL + +G++ L + S + V +E A R
Sbjct: 199 VLKGLEALFLEALAAAEKMGLADRVLASLDASFPEHHLRDLALYLVERNLE--HADR--- 253
Query: 238 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 287
A +L A+ VGV+ + ++ + K
Sbjct: 254 -------RAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRP 296
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 1e-44
Identities = 41/295 (13%), Positives = 92/295 (31%), Gaps = 41/295 (13%)
Query: 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-------GVPTKETPFEVAEASDVVIT 52
+A L ++A +D+ N + GV + +A A DVV++
Sbjct: 35 AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACA-DVVLS 93
Query: 53 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 112
++ ++ V L + ID +++ P T + A++
Sbjct: 94 LVVGAATK-AVAASAAPHLSDE-----AVFIDLNSVGPDTKALAAGAIAT---------- 137
Query: 113 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAA 171
++ V V + G ++G N G G ++
Sbjct: 138 GKGSFVEGAVMARVPPYAEKVPILVAGRRAVE---VAERLNALGMNLEAVGETPGQASSL 194
Query: 172 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 231
K+ ++ + + EAL+ + G++ L + + W + + E
Sbjct: 195 KMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDWRDVADYYLSRTFE--H 252
Query: 232 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDF 286
+R ++ A + + G++ P++ A + A D
Sbjct: 253 GAR----------RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLS 297
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 3e-36
Identities = 35/229 (15%), Positives = 70/229 (30%), Gaps = 26/229 (11%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
+ +AS L G ++ + + V ET E + VVI+ + +
Sbjct: 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL 70
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+ + +D + I P+T R S+ + +DA
Sbjct: 71 GAARRAGRHV--------RGIYVDINNISPETVRMASSLIEKG------------GFVDA 110
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTM 179
+ G V A G + + G N G G+ +A K+ +
Sbjct: 111 AIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNIEVRGREPGDASAIKMLRSSYT 166
Query: 180 AVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 228
+ E LT LG+ + ++L + + + + +
Sbjct: 167 KGVSALLWETLTAAHRLGLEE-DVLEMLEYTEGNDFRESAISRLKSSCI 214
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 1e-08
Identities = 25/237 (10%), Positives = 66/237 (27%), Gaps = 26/237 (10%)
Query: 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSS 58
+ +A L + G++ + V+ + + EV + + I L S+
Sbjct: 21 LATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSA 80
Query: 59 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 118
++ G I + + + ++ + E
Sbjct: 81 -FAELLQG----------------IVEGKREEALMVHTAGSIPMNVW-EGHVPHYGVFYP 122
Query: 119 DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT 178
S F+ S + K + ++ N +Y + + + T
Sbjct: 123 MQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLS-NRVYDADSEQRKSLHLAAVFT 181
Query: 179 MAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRN 235
+ + A L + + + +++ ++ + + G PA R
Sbjct: 182 CNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTAQTG-----PAIRY 233
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 28/183 (15%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---VVITMLPSS 57
MG M L K G++ V+D+N N ++ G+ + E VV M+P++
Sbjct: 33 MGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA 92
Query: 58 SHVLDVYNGPNGLLQGGNSVRPQLLID---SSTIDPQTSRNISAAVSNCILKEKKDSWEN 114
V + LL + ++ID S D R ++ + ++
Sbjct: 93 V-VDSMLQRMTPLLAAND-----IVIDGGNSHYQD--DIRRADQ------MRAQGITY-- 136
Query: 115 PVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNTIYCGGAGNGAAAK 172
+D SGG+ E G M+GG + A + P+F L+ G
Sbjct: 137 ---VDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGT 192
Query: 173 ICN 175
Sbjct: 193 AEL 195
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 4e-08
Identities = 32/228 (14%), Positives = 66/228 (28%), Gaps = 21/228 (9%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG R+ + + + +A ++ MG+P + +DVV+ LP + +
Sbjct: 23 MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALP-DNII 80
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD----SWENPV 116
V ++ G +++ P A + + E
Sbjct: 81 EKVAEDIVPRVRPG-----TIVLILDAAAPYAGVMPERADITYFIGHPCHPPLFNDETDP 135
Query: 117 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 176
GG+ A+ + ++ G E+ Y + +M A +
Sbjct: 136 AARTDYHGGI--AKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPG 193
Query: 177 LT---MAVSMLGVSEALT-LGQSLGISASTLTKI----LNSSSARCWS 216
L+ + + A+ GI LN A +
Sbjct: 194 LSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG 241
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 3e-07
Identities = 21/180 (11%), Positives = 49/180 (27%), Gaps = 28/180 (15%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
+A+ L+ +G+K+ V N E + +V+ + +
Sbjct: 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFVAVFREHYS 97
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
L + + ++L+D S Q + + + +
Sbjct: 98 --------SLCSLSDQLAGKILVDVSNPTEQEHLQHRESNA---------EYLASLFPTC 140
Query: 121 PVSGGV----------LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 170
V + + G +A +A + L+MG + G +
Sbjct: 141 TVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSLASAWE 200
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-05
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 11/170 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
G + +++ GY + N V + E A SDV++ + +
Sbjct: 30 FGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVL--CYSEAASRSDVIVLAVHREHYD 87
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
L + +S++ ++LID S S A L + + A
Sbjct: 88 F--------LAELADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFNTISA 139
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 170
+A F+ G A + ++G + G
Sbjct: 140 WALQS-GTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKE 188
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 35/170 (20%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTKETPFE-----VA--EASDV 49
MG +A N+ + G+K+AV + MK + FE A +
Sbjct: 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRK 71
Query: 50 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-TSRNISAAVSNCILKEK 108
+ ++ + + + + G+ +L+D+ + R L+
Sbjct: 72 ALILVQAGAATDSTIEQLKKVFEKGD-----ILVDTGNAHFKDQGRRAQQ------LEAA 120
Query: 109 KDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLSM 155
+ L +SGG E G F GG+ ++ +P+ +
Sbjct: 121 GLRF-----LGMGISGG----EEGARKGPAFFPGGTLSVWEEIRPIVEAA 161
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 4e-04
Identities = 19/171 (11%), Positives = 36/171 (21%), Gaps = 17/171 (9%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG + N AG+++ + + + + P+ A V
Sbjct: 30 MGQAIGHNFEIAGHEVTYYGSK---DQATTLGEIVIMAVPYPALAALAKQYATQLKGKIV 86
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+D+ N N V + A + +
Sbjct: 87 VDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTT---------FAATLQSG 137
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 171
V+G + G + A Q G
Sbjct: 138 QVNGKEPTT-----VLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRAREL 183
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.97 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.97 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.97 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.96 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.96 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.96 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.96 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.96 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.96 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.96 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.94 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.94 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.94 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.93 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.93 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.9 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.9 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.84 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.84 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.84 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.84 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.83 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.82 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.82 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.81 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.81 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.8 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.78 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.76 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.76 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.75 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.74 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.73 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.72 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.71 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.71 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.7 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.68 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.65 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.65 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.64 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.64 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.64 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.63 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.62 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.6 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.58 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.55 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.54 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.52 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.52 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.52 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.26 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.49 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.48 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.47 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.42 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.41 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.38 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.38 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.36 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.35 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.31 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.23 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.02 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.95 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.85 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.85 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.81 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.72 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.67 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.66 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.65 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.65 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.63 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.6 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.59 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.58 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.56 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.56 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.56 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.56 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.56 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.55 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.55 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.54 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.54 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.53 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.53 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.53 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.53 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.52 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.51 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.44 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.4 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.39 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.38 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.38 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.37 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.36 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.31 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.31 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.3 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.22 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.21 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.2 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.15 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.11 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.1 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.06 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.03 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.97 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.75 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.72 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.65 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.64 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.61 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.61 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.59 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.57 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.52 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.52 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.5 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.49 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.44 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.43 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.43 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.4 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.38 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.37 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.35 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.33 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.33 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.33 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.29 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.29 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.29 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.26 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.26 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.26 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.26 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.15 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.14 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.13 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.1 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.07 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.06 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.04 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.03 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.02 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.0 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.96 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.96 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.91 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.89 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 96.89 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.85 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.84 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.84 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.8 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 96.79 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.78 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.73 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.7 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.69 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.65 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.64 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.64 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.59 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.59 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.54 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.49 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.48 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.43 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.41 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.4 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.32 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.24 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.23 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.22 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.19 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.19 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.17 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.16 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.11 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.1 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 96.09 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.08 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.08 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.03 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 95.95 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.93 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.89 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.83 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.83 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.82 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.81 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 95.8 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.77 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.77 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.73 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.72 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.71 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 95.67 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 95.6 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.59 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.58 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.58 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.57 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.47 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.42 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.39 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.36 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.36 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 95.35 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.33 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 95.27 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.25 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 95.2 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 95.13 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 95.12 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 95.08 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.02 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.99 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 94.94 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 94.93 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 94.92 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 94.92 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 94.91 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 94.86 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 94.74 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 94.69 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 94.58 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 94.58 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 94.54 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 94.49 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.46 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 94.32 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 94.3 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 94.28 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 94.25 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 94.22 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 94.2 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 94.17 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 94.12 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.08 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 94.02 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 93.93 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 93.81 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 93.56 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 93.48 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 93.45 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 93.44 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 93.33 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 93.33 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 93.29 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.26 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 93.22 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 93.21 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.21 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 93.01 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 92.98 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 92.91 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 92.89 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 92.8 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 92.71 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 92.67 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 92.66 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 92.57 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.26 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 92.16 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 92.07 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 92.04 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 91.96 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 91.82 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 91.64 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 91.55 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 91.47 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 91.28 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 91.22 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 91.22 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 91.18 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 91.16 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 91.13 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 91.09 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.83 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 90.8 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.76 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 90.75 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 90.71 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 90.7 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 90.66 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 90.62 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 90.46 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 90.44 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 90.41 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 90.32 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 90.18 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 90.14 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 90.09 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 90.06 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 90.06 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 90.0 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 89.97 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 89.97 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 89.94 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 89.86 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.86 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 89.84 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 89.65 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 89.63 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 89.63 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 89.59 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 89.58 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 89.54 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 89.39 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 89.35 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 89.34 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 89.3 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 89.25 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 89.08 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 89.03 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 89.01 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 89.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 88.98 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 88.93 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 88.9 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 88.86 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 88.81 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 88.8 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 88.8 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 88.78 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 88.71 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 88.69 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 88.64 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 88.57 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 88.53 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 88.45 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 88.33 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 88.28 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 88.15 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 88.14 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 88.1 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 87.84 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 87.83 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 87.73 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 87.72 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 87.61 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 87.6 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 87.59 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 87.54 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.51 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 87.47 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 87.46 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 87.43 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 87.31 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 87.15 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 87.11 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 87.05 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 86.9 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 86.83 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 86.74 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 86.71 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 86.51 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 86.45 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 86.31 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 86.23 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 86.19 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 85.85 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 85.8 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 85.77 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 85.7 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 85.66 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 85.44 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 85.41 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 85.36 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.35 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 85.34 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 85.2 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 85.11 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 85.07 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 85.02 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 85.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 85.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 84.99 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 84.98 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 84.7 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 84.69 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 84.61 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 84.38 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 84.25 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 84.08 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 84.05 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 84.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 83.98 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 83.92 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 83.91 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 83.88 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 83.86 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 83.79 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 83.71 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 83.7 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 83.66 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 83.62 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 83.47 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 83.35 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 83.33 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 83.33 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 83.29 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 83.21 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 83.18 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 83.1 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 83.05 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 83.03 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 83.02 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 82.92 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 82.9 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 82.89 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 82.81 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 82.78 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 82.69 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 82.66 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 82.63 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 82.62 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 82.59 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 82.58 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 82.52 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 82.49 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 82.48 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 82.46 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 82.39 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 82.31 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 82.3 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 82.28 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 82.28 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 82.23 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 82.14 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 82.13 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 82.12 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 82.12 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 82.11 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 82.11 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 82.11 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 82.11 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 82.07 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 82.05 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 82.04 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 81.96 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 81.8 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 81.78 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 81.76 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 81.74 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 81.71 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 81.6 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 81.6 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 81.58 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 81.45 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 81.42 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 81.42 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 81.38 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 81.37 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 81.28 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 81.24 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 81.2 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 81.2 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 81.17 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 81.07 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 80.84 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 80.73 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 80.65 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 80.65 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 80.65 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 80.53 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 80.51 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 80.46 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 80.41 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 80.27 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 80.25 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 80.18 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-56 Score=393.78 Aligned_cols=285 Identities=43% Similarity=0.691 Sum_probs=270.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|.++||+|++|||++++++.+.+.|+..+.|+.|+++++|+||+|||++.++++|+....++++. ..+|+
T Consensus 14 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~--~~~g~ 91 (300)
T 3obb_A 14 MGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAH--IAPGT 91 (300)
T ss_dssp THHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTS--CCC-C
T ss_pred HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhc--CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887777765 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.++ |++|+|+|++|++..+..|++++++||+++++++++++|+.+|.+++
T Consensus 92 iiId~sT~~p~~~~~~a~~~~~~----------G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 161 (300)
T 3obb_A 92 LVLECSTIAPTSARKIHAAARER----------GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIF 161 (300)
T ss_dssp EEEECSCCCHHHHHHHHHHHHTT----------TCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999763 38999999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
|+|+.|+++.+|+++|.+.+.++.+++|++.++++.|+|++.++++++.+++.+|.++.+.|.+......+..++|+++|
T Consensus 162 ~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f 241 (300)
T 3obb_A 162 HAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGF 241 (300)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSS
T ss_pred EeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999888888877776667889999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCC
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 297 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 297 (300)
+++.+.||++++.+++++.|+++|+.+.+.++|+++.++|+|++|+++++++|.+..
T Consensus 242 ~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~ 298 (300)
T 3obb_A 242 MAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQ 298 (300)
T ss_dssp BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999987643
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-52 Score=365.44 Aligned_cols=276 Identities=21% Similarity=0.326 Sum_probs=247.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|+++||+|++|||++++++++.+.|+..+.++.|+++.+|+||+|+|++.++++++.. .++.. ..+++
T Consensus 16 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~--~~~~~--~~~~~ 91 (297)
T 4gbj_A 16 LGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSM--ELVEK--LGKDG 91 (297)
T ss_dssp THHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCH--HHHHH--HCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHH--HHHhh--cCCCe
Confidence 999999999999999999999999999999999999999999999999999999999888887753 23333 34668
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.++ +++|+|+|++|++..+..|++++++||+++.+++++++|+.++.+++
T Consensus 92 iiid~sT~~p~~~~~~~~~~~~~----------g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~ 161 (297)
T 4gbj_A 92 VHVSMSTISPETSRQLAQVHEWY----------GAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVF 161 (297)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEE
T ss_pred EEEECCCCChHHHHHHHHHHHhc----------CCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeE
Confidence 99999999999999999998763 38999999999999999999999999999999999999999999999
Q ss_pred eeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCC-
Q 022237 161 YCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG- 238 (300)
Q Consensus 161 ~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~- 238 (300)
++|+ +|.++.+|+++|.+.+.++.+++|++.+++++|+|+++++++++.+.+.||.++.+.+ ++..++|.|
T Consensus 162 ~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~p~ 234 (297)
T 4gbj_A 162 DFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGK-------LVASNTYEPV 234 (297)
T ss_dssp ECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHH-------HHHHTCCCSC
T ss_pred EecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCc-------cccCCCCCCc
Confidence 9985 8999999999999999999999999999999999999999999999999988765433 245789986
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCC
Q 022237 239 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 297 (300)
Q Consensus 239 ~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 297 (300)
+|+++.+.||++++.+++++.|+|+|+.+.+.++|+++.++|+|++||++++++++++.
T Consensus 235 ~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~a 293 (297)
T 4gbj_A 235 AFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDDA 293 (297)
T ss_dssp SSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999987653
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=326.82 Aligned_cols=278 Identities=30% Similarity=0.421 Sum_probs=252.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|+++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||++.++++++....++++. .++++
T Consensus 32 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~--l~~g~ 109 (310)
T 3doj_A 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQ--ICEGK 109 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGG--CCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhc--cCCCC
Confidence 7999999999999999999999999999999999888999999999999999999988899998433344443 35668
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||+.|.+.+++.+.+.+. +.+|+++|+++++..+..|+++++++|+++.+++++++|+.+|.+++
T Consensus 110 ~vv~~st~~~~~~~~~~~~~~~~----------g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~~ 179 (310)
T 3doj_A 110 GYIDMSTVDAETSLKINEAITGK----------GGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSF 179 (310)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999887652 37899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.++.+|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.+|.++.+.+ ++.+++|.++|
T Consensus 180 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~f 252 (310)
T 3doj_A 180 YLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGP-------SMNKSSYPPAF 252 (310)
T ss_dssp ECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHH-------HHHTTCCCCSS
T ss_pred EeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhh-------hhhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999998877776554322 24568999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCC
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 297 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 297 (300)
.++++.||++++.+++++.|+++|+++.+.++|+.+.++|+|++||+++++++++.+
T Consensus 253 ~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 309 (310)
T 3doj_A 253 PLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFSR 309 (310)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998754
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=323.69 Aligned_cols=277 Identities=26% Similarity=0.413 Sum_probs=251.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|++|+++||+|++|||++++++++.+.|+..+.++.++++++|+||+|||++..++.++... ++++. ..+++
T Consensus 42 mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~-~~~~~--l~~~~ 118 (320)
T 4dll_A 42 MGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ-GVAAA--MKPGS 118 (320)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT-CHHHH--CCTTC
T ss_pred HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch-hHHhh--CCCCC
Confidence 8999999999999999999999999999999999888999999999999999999988899888632 34433 34668
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..|+++++++|+++.+++++++|+.+ .+++
T Consensus 119 ~vi~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~~ 187 (320)
T 4dll_A 119 LFLDMASITPREARDHAARLGAL----------GIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRAT 187 (320)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEEE
T ss_pred EEEecCCCCHHHHHHHHHHHHHc----------CCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCEE
Confidence 99999999999999999887652 379999999999999999999999999999999999999999 8899
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.++.+|+++|.+.+.++.+++|++.++++.|+|++++.++++.+.+.||.++.+.+ ++.+++|.++|
T Consensus 188 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~l~~~~~~gf 260 (320)
T 4dll_A 188 HVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ-------RMVERDFAPRA 260 (320)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHH-------HHHTTCCCCSS
T ss_pred EeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhh-------hhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999998888887664432 24578999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCCC
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 298 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 298 (300)
+++++.||++++.+++++.|+++|+.+.+.++|+++.++|+|++|++++++++++...
T Consensus 261 ~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 318 (320)
T 4dll_A 261 RLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNG 318 (320)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999986543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=319.28 Aligned_cols=275 Identities=31% Similarity=0.458 Sum_probs=250.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|++|+++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||++.++++++....++.+. .++++
T Consensus 12 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~--l~~g~ 89 (287)
T 3pdu_A 12 MGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEG--IGGGR 89 (287)
T ss_dssp THHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGT--CCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhc--ccCCC
Confidence 8999999999999999999999999999998899888999999999999999999988899988433334433 34668
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..|+++++++++++.+++++++|+.+|.+++
T Consensus 90 ~vv~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 159 (287)
T 3pdu_A 90 GYIDMSTVDDETSTAIGAAVTAR----------GGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCL 159 (287)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999998887652 37999999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.+..+|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.||.++.+.+ ++.+++|.++|
T Consensus 160 ~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~ 232 (287)
T 3pdu_A 160 HLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQ-------MLLSGEFPTSF 232 (287)
T ss_dssp ECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH-------HHHHTCCCCSS
T ss_pred EcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhcc-------ccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998888887654422 24467898999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHh
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 294 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (300)
.++++.||++++.+++++.|+++|+.+.+.++|+++.++|+|++||++++++++
T Consensus 233 ~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 233 PLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999875
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=317.30 Aligned_cols=275 Identities=31% Similarity=0.467 Sum_probs=249.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|++|+++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||++.++++++....++.+. .++++
T Consensus 12 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~--l~~~~ 89 (287)
T 3pef_A 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEG--IGEGR 89 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHH--CCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhc--CCCCC
Confidence 7999999999999999999999999999999999888999999999999999999888999998433334432 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||+.|.+.+++.+.+.+. +.+|+++|+++++..+..+++.++++++++.+++++++|+.+|.+++
T Consensus 90 ~vi~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 159 (287)
T 3pef_A 90 GYVDMSTVDPATSQRIGVAVVAK----------GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKII 159 (287)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHh----------CCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeE
Confidence 99999999999999999887652 37899999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++|+.|.++.+|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.||.++.+.+ ++.+++|.++|
T Consensus 160 ~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~ 232 (287)
T 3pef_A 160 HLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGG-------LIRDRNFAPAF 232 (287)
T ss_dssp ECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH-------HHHTTCCCCSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhh-------hhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998888887654422 24567999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHh
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 294 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (300)
.++++.||++++.++++++|+++|+.+.+.++|+++.++|+|++|+++++++++
T Consensus 233 ~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 233 PLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999765
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=318.81 Aligned_cols=277 Identities=26% Similarity=0.385 Sum_probs=248.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||++||++|+++||+|++|||++++++.+.+.|... +.++.++++++|+||+|||++..++.++...+++.+. .+++
T Consensus 18 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~--l~~g 95 (303)
T 3g0o_A 18 MGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHL--MKPG 95 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGG--SCTT
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhh--CCCC
Confidence 799999999999999999999999999999999887 7899999999999999999988899988433334433 3466
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCe
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT 159 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~ 159 (300)
++|||+||+.|.+.+++.+.+.+. +.+|+++|+++++..+..|++.++++++++.+++++++|+.+|+++
T Consensus 96 ~ivv~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~ 165 (303)
T 3g0o_A 96 SAVMVSSTISSADAQEIAAALTAL----------NLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNV 165 (303)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHTT----------TCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEE
T ss_pred CEEEecCCCCHHHHHHHHHHHHHc----------CCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCE
Confidence 899999999999999998887642 3789999999999999999999999999999999999999999999
Q ss_pred EeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCC
Q 022237 160 IYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG 238 (300)
Q Consensus 160 ~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 238 (300)
+++++ +|.++.+|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.||.++.+. +. +..++|.+
T Consensus 166 ~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~--~~-----~~~~~~~~ 238 (303)
T 3g0o_A 166 YRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRM--QH-----VVDGDYTP 238 (303)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHH--HH-----HHTTCCCC
T ss_pred EECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhh--HH-----HhcCCCCC
Confidence 99998 999999999999999999999999999999999999999999999888888765432 22 34678989
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcC
Q 022237 239 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 296 (300)
Q Consensus 239 ~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (300)
+|.++++.||++++.++++++|+++|+.+.+.++|+++.++|+|++||++++++++++
T Consensus 239 ~~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (303)
T 3g0o_A 239 RSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296 (303)
T ss_dssp SSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred CCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999987654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=307.95 Aligned_cols=273 Identities=14% Similarity=0.175 Sum_probs=237.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|+++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||++.++++++.. ..+ .. ..+++
T Consensus 20 mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~-~~l-~~--~~~g~ 95 (306)
T 3l6d_A 20 MGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM-PGV-AR--ALAHR 95 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS-TTH-HH--HTTTC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc-cch-hh--ccCCC
Confidence 799999999999999999999999999999889888899999999999999999999889998852 122 22 24568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||+.|.+.+++.+.+.+. +++|+++|++++++....+.++++++|+++.+++++++|+.+|.+++
T Consensus 96 ivid~st~~~~~~~~l~~~~~~~----------g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~~ 165 (306)
T 3l6d_A 96 TIVDYTTNAQDEGLALQGLVNQA----------GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTV 165 (306)
T ss_dssp EEEECCCCCTTHHHHHHHHHHHT----------TCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999887652 37999999999988777777789999999999999999999988999
Q ss_pred ee--CC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC--CCccccccCCCCCCcccCCCCCCC
Q 022237 161 YC--GG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASRN 235 (300)
Q Consensus 161 ~~--g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~ 235 (300)
++ |+ +|.++.+| .+.+.++.+++|++.++++.|+|++++.++++.+. +.+|.++.+.+ ++.+++
T Consensus 166 ~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~ 234 (306)
T 3l6d_A 166 FLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVR-------RLETQD 234 (306)
T ss_dssp ECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTC
T ss_pred EecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHH-------HHhcCC
Confidence 99 86 89999999 45567889999999999999999999999999875 56776654432 245678
Q ss_pred CCCC-cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCCC
Q 022237 236 YGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 298 (300)
Q Consensus 236 ~~~~-~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 298 (300)
|.++ |+++++.||++++.+++++.|+++|+.+.+.++|+++.++|+|++||+++++++++...
T Consensus 235 ~~~~~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~~ 298 (306)
T 3l6d_A 235 FKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQE 298 (306)
T ss_dssp CCTTSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC----
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHHh
Confidence 9874 79999999999999999999999999999999999999999999999999998876554
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=293.01 Aligned_cols=258 Identities=26% Similarity=0.328 Sum_probs=232.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|++|+++||+|++|||++++++.+.+.|+..+.+++++++ +|+||+|||++.++++++.+ +.+. .++++
T Consensus 26 mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~---l~~~--l~~g~ 99 (296)
T 3qha_A 26 MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGE---LAGH--AKPGT 99 (296)
T ss_dssp THHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHH---HHTT--CCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHH---HHHh--cCCCC
Confidence 899999999999999999999999999999999998899999999 99999999998888888854 3332 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||+.|.+.+++.+.+.+. +++|+++|+++++..+..+++.++++++++.+++++++|+.+|.+++
T Consensus 100 ivv~~st~~~~~~~~~~~~~~~~----------g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 169 (296)
T 3qha_A 100 VIAIHSTISDTTAVELARDLKAR----------DIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVI 169 (296)
T ss_dssp EEEECSCCCHHHHHHHHHHHGGG----------TCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHHc----------CCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeE
Confidence 99999999999999999888652 37999999999999999999999999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHHhcCCCccccccCCCCCCcccCCCCCC
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL------TKILNSSSARCWSSDSYNPVPGVMEGVPASR 234 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 234 (300)
++|+.|.++.+|+++|.+.+.++++++|++.++++.|+|++++ .++++.+.+.||..+ .+. +..+
T Consensus 170 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~----~~~-----~~~~ 240 (296)
T 3qha_A 170 HAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD----NMK-----DLEP 240 (296)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS----SCS-----CCCT
T ss_pred EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh----chh-----hhhc
Confidence 9999999999999999999999999999999999999999999 999998888777533 222 3455
Q ss_pred CCCCCcch-----hhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q 022237 235 NYGGGFAS-----KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 284 (300)
Q Consensus 235 ~~~~~~~~-----~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~ 284 (300)
|.++|.+ +++.||++++.++++++|+++|+++.+.++|+.+.++|++++
T Consensus 241 -~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 241 -DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp -TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred -CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence 8889999 999999999999999999999999999999999999999654
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=285.81 Aligned_cols=286 Identities=51% Similarity=0.834 Sum_probs=252.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++++.+|.++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|+|++..++.++.+..++++. ..+++
T Consensus 11 mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~--l~~~~ 88 (296)
T 2gf2_A 11 MGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKK--VKKGS 88 (296)
T ss_dssp THHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGGGT--CCTTC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHHhc--CCCCC
Confidence 8999999999999999999999999999988888878899999999999999999988899988765544432 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+||++|++.+.+.+++.+.+.+. +..|+++|+.+++..+..+.+.++++++++.+++++++|+.+|.+++
T Consensus 89 ~vv~~s~~~~~~~~~~~~~~~~~----------g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~ 158 (296)
T 2gf2_A 89 LLIDSSTIDPAVSKELAKEVEKM----------GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVV 158 (296)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeE
Confidence 99999999999988887776541 26889999998887777888888999999999999999999999889
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
+++..|.+..+|+++|.+.+..+.++.|++.++++.|++++++.+++..+.+.+|.+....+.++++...+..++|.++|
T Consensus 159 ~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~ 238 (296)
T 2gf2_A 159 YCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 238 (296)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSS
T ss_pred EeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCC
Confidence 99888999999999999999999999999999999999999999999987777777665556666655445667898999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcCCC
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 298 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 298 (300)
.++...||++.+.++++++|+++|+.+.++++|+.+.++|+|++||+++++++.+.+|
T Consensus 239 ~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~ 296 (296)
T 2gf2_A 239 GTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEET 296 (296)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCCCC
T ss_pred chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999876653
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=271.36 Aligned_cols=276 Identities=36% Similarity=0.518 Sum_probs=240.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..++..|.++|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.+++.++....++.+. ..+++
T Consensus 16 ~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~--l~~~~ 93 (299)
T 1vpd_A 16 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEG--AKPGT 93 (299)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHH--CCTTC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhc--CCCCC
Confidence 8999999999999999999999999999988888888899999999999999999887888888322223222 24568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+||++|+..|.+.+++.+.+.+. +++|+++|++++++.+..+.++++++++++.++.++++|+.+|.+++
T Consensus 94 ~vv~~s~~~~~~~~~l~~~~~~~----------g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~ 163 (299)
T 1vpd_A 94 VLIDMSSIAPLASREISDALKAK----------GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 163 (299)
T ss_dssp EEEECSCCCHHHHHHHHHHHHTT----------TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeE
Confidence 99999999998888888887642 37899999999888877888889999999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++++.+.+..+|+++|.+.+.++.++.|++.++++.|++++++.+++..+...+|.+... .+. +..++|.++|
T Consensus 164 ~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~~-----~l~~~~~~g~ 236 (299)
T 1vpd_A 164 HTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAK--APM-----VMDRNFKPGF 236 (299)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHH--HHH-----HHTTCCCCSS
T ss_pred EeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHh--hhH-----hhcCCCCCCC
Confidence 999899999999999999999999999999999999999999999998876666543322 122 3356777889
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
.++...||++.+.++++++|+++|+.+.++++++++.++|+|++||+++++++++
T Consensus 237 ~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (299)
T 1vpd_A 237 RIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 291 (299)
T ss_dssp BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998864
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=266.23 Aligned_cols=277 Identities=34% Similarity=0.509 Sum_probs=240.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..++..|.+.||+|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.+++.++...+.+.+. ..+++
T Consensus 15 ~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~--l~~~~ 92 (301)
T 3cky_A 15 MGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSA--CKAGT 92 (301)
T ss_dssp THHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHH--SCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhc--CCCCC
Confidence 8999999999999999999999999999988888878899999999999999999988888888522223322 24568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+||++++..|.+.+++.+.+.+. +++|+++|+.+++..+..|.++++++++++.++.++++|+.+|.+++
T Consensus 93 ~vv~~~~~~~~~~~~l~~~~~~~----------g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~ 162 (301)
T 3cky_A 93 VIVDMSSVSPSSTLKMAKVAAEK----------GIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIY 162 (301)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHT----------TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEE
Confidence 99999999998888888877642 27889999999887777788788899999999999999999999888
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++++.+.+..+|+++|.+.+.++.++.|++.++++.|++++++.+++..+...++.+....+. . +..++|.++|
T Consensus 163 ~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~l~~~~~~g~ 236 (301)
T 3cky_A 163 HVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEK-F-----IMSGDFAGGF 236 (301)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCC-C-----CCTCCCSSSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhh-h-----hhcCCCCCCc
Confidence 899899999999999999999999999999999999999999999999876666554322210 1 3467888899
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
.++...||+..+.++++++|+++|+.+.++++++++.+.|+|++||+++++++.+
T Consensus 237 ~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (301)
T 3cky_A 237 AMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQ 291 (301)
T ss_dssp BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998854
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=276.53 Aligned_cols=261 Identities=15% Similarity=0.226 Sum_probs=219.0
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCCh-------hhHHHHHhCCCCCCC-CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNC-------NVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~-------~~~~~~~~~g~~~~~-~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||++||++|+++| |+|++|||++ +..+.+.+.|+ +. ++.++++++|+||+|||++...+ ++.+ +.
T Consensus 35 mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~~-~~~~---i~ 108 (317)
T 4ezb_A 35 AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATKA-VAAS---AA 108 (317)
T ss_dssp HHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHHH-HHHH---HG
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHHH-HHHH---HH
Confidence 7999999999999 9999999998 56677777777 66 88999999999999999985554 4432 33
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 151 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~l 151 (300)
+. .+++++|||+||+.|.+.+++.+.+.+. +.+|+++|++|+ ..+..++++++++|+++ ++++++
T Consensus 109 ~~--l~~~~ivv~~st~~p~~~~~~~~~l~~~----------g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~--~~~~~l 173 (317)
T 4ezb_A 109 PH--LSDEAVFIDLNSVGPDTKALAAGAIATG----------KGSFVEGAVMAR-VPPYAEKVPILVAGRRA--VEVAER 173 (317)
T ss_dssp GG--CCTTCEEEECCSCCHHHHHHHHHHHHTS----------SCEEEEEEECSC-STTTGGGSEEEEESTTH--HHHHHH
T ss_pred hh--cCCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEEeccCCCC-chhhcCCEEEEEeCChH--HHHHHH
Confidence 32 3456899999999999999999888652 378999999996 44567888999999877 999999
Q ss_pred HHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccCCCCCCcccC
Q 022237 152 FLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEG 229 (300)
Q Consensus 152 l~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~ 229 (300)
|+.+|.+++++|+ +|.++.+|+++|.+.+.++++++|++.++++.|+|++ +++.+..+. +.+|. .+. +
T Consensus 174 l~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~~--~~~--~----- 243 (317)
T 4ezb_A 174 LNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDWR--DVA--D----- 243 (317)
T ss_dssp HHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHH--HHH--H-----
T ss_pred HHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccHH--Hhh--h-----
Confidence 9999999999998 8999999999999999999999999999999999995 566666554 33331 111 1
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH----HHHHHHcCCC-CCchHHHHHHHhc
Q 022237 230 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI----YAKLCENGHD-SKDFSCVFQHYYG 295 (300)
Q Consensus 230 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~----~~~a~~~g~g-~~d~~~~~~~~~~ 295 (300)
++.+++|.++|+ +.||++++.+++++.|+++|+++.+.++ |+.+.+.|++ ++||+++++.++.
T Consensus 244 ~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~ 311 (317)
T 4ezb_A 244 YYLSRTFEHGAR---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLAR 311 (317)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHH
T ss_pred hhhcCCCCCCcc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 234567777777 4999999999999999999999999999 8888899997 9999999998754
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=263.67 Aligned_cols=275 Identities=32% Similarity=0.488 Sum_probs=239.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.++..|.+.||+|++|| ++++++.+.+.|+....++.++++++|+||+|+|++.+++.++.....+.+. ..+++
T Consensus 14 ~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~--l~~~~ 90 (295)
T 1yb4_A 14 MGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKT--SLQGK 90 (295)
T ss_dssp THHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTS--CCTTE
T ss_pred HHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhc--CCCCC
Confidence 89999999999999999999 9999999988888888899999999999999999997788888632223322 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+||++|+..|.+.+++.+.+.+. +++|+++|+.+++..+..+.++++++++++.+++++++|+.+|.+++
T Consensus 91 ~vv~~s~~~~~~~~~l~~~~~~~----------g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~ 160 (295)
T 1yb4_A 91 TIVDMSSISPIETKRFAQRVNEM----------GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNIT 160 (295)
T ss_dssp EEEECSCCCHHHHHHHHHHHHTT----------TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEE
Confidence 99999999999888888877641 37889999999887777888788899999999999999999999889
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++++.+.+..+|+++|.+.+..+.++.|++.++++.|++++++.+++..+...+|.+... .+ .+..++|.++|
T Consensus 161 ~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~-----~~~~~~~~~g~ 233 (295)
T 1yb4_A 161 LVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVH--GE-----RMINRTFEPGF 233 (295)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHH--HH-----HHHTTCCCCSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh--hH-----HHhcCCCCCCC
Confidence 999899999999999999999999999999999999999999999998877555543311 11 13356888999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
++..+.||+..+.+++++.|+++|+.++++++++++.+.|+|++||+++++++++
T Consensus 234 ~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (295)
T 1yb4_A 234 KIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL 288 (295)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998864
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=266.30 Aligned_cols=275 Identities=28% Similarity=0.431 Sum_probs=240.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++++..|.+.|++|++|||++++++.+.+.|.....++.++++++|+||+|+|++..+++++.+..++++. ..+++
T Consensus 41 mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~--l~~~~ 118 (316)
T 2uyy_A 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQG--IRPGK 118 (316)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGG--CCTTC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhc--CCCCC
Confidence 7999999999999999999999999999988888777889999999999999999887899888765434332 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+||++|++.|...+++.+.+... +..|+++|+++++.....+.+.++++++++.+++++++|+.+|.+++
T Consensus 119 ~vv~~s~~~~~~~~~l~~~~~~~----------~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~ 188 (316)
T 2uyy_A 119 CYVDMSTVDADTVTELAQVIVSR----------GGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSF 188 (316)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEE
Confidence 99999999999998888877531 26899999999988888888888889999999999999999999999
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++++++.+...|++.|.+...++..+.|++.++++.|++++++.+++..+...++.+.... +. +..++|.++|
T Consensus 189 ~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~~-----~l~~~~~~g~ 261 (316)
T 2uyy_A 189 FLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKC--QN-----ILQGNFKPDF 261 (316)
T ss_dssp ECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHH--HH-----HHHTCCCCSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhh--HH-----hhcCCCCCCC
Confidence 9988999999999999999999999999999999999999999999998776555433221 11 2346788899
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHh
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 294 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (300)
+++.+.||++.+.+++++.|+++|+.++++++++++.+.|+|++||++++++++
T Consensus 262 ~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 262 YLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998653
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=267.89 Aligned_cols=255 Identities=19% Similarity=0.208 Sum_probs=215.6
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCC--hhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVN--CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~--~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||++||++|+++|| +|++|||+ +++.+.+.+.|+..+.++.++++++|+||+|||++... +++.+ +.+. .+
T Consensus 35 mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~-~~~~~---l~~~--l~ 108 (312)
T 3qsg_A 35 AASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAAL-EVAQQ---AGPH--LC 108 (312)
T ss_dssp HHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHH-HHHHH---HGGG--CC
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHH-HHHHh---hHhh--cC
Confidence 79999999999999 99999997 58888888889988899999999999999999998554 45543 3322 34
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
++++|||+||+.|.+.+++.+.+.+. . .+.+|+++|++++++.. .++++++++|+++ ++++++|+.+|.
T Consensus 109 ~~~ivvd~st~~~~~~~~~~~~~~~~----~----~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~~ll~~~g~ 177 (312)
T 3qsg_A 109 EGALYADFTSCSPAVKRAIGDVISRH----R----PSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQAAFTLYGC 177 (312)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHH----C----TTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHHHHHHTTTC
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhh----c----CCCeEEeccccCCchhh-cCCEEEEecCChH--HHHHHHHHHhCC
Confidence 56899999999999999999887652 1 13799999999976554 7888999999887 999999999999
Q ss_pred CeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCC
Q 022237 158 NTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY 236 (300)
Q Consensus 158 ~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 236 (300)
+++++|+ +|.++.+|+++|++.+.++.+++|++.++++.|+|+ ++++.++.+.+ ++.++.+. + ++..++|
T Consensus 178 ~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~~-~~~~~~~~--~-----~~~~~~~ 248 (312)
T 3qsg_A 178 RIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASFP-EHHLRDLA--L-----YLVERNL 248 (312)
T ss_dssp EEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHSG-GGTHHHHH--H-----HHHHHHH
T ss_pred CeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcCC-chhHHHhh--h-----HhhcCCC
Confidence 9999998 899999999999999999999999999999999999 57788887653 33322221 1 2345778
Q ss_pred CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q 022237 237 GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 284 (300)
Q Consensus 237 ~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~ 284 (300)
.++|++ .||++++.+++++.|+++|+++.+.++|+++.+.|++++
T Consensus 249 ~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~~ 293 (312)
T 3qsg_A 249 EHADRR---AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALK 293 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred Ccccch---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCccc
Confidence 888875 799999999999999999999999999999999988773
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=260.08 Aligned_cols=271 Identities=27% Similarity=0.384 Sum_probs=233.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..++..|.+ ||+|++|||++++.+.+.+.|...+. +.++++++|+||+|+|.+..+++++.++... ..+++
T Consensus 12 ~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~-----l~~~~ 84 (289)
T 2cvz_A 12 MGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAEALYPY-----LREGT 84 (289)
T ss_dssp THHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHHHTTT-----CCTTE
T ss_pred HHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHHHHHHhh-----CCCCC
Confidence 89999999999 99999999999999988877766655 7788899999999999986688877443222 24568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+||++|+..+...+++.+.+.+. +.+|+++|+++++..+..|.++++++++++.++.++++| .+|.+++
T Consensus 85 ~vv~~s~~~~~~~~~l~~~~~~~----------g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~ 153 (289)
T 2cvz_A 85 YWVDATSGEPEASRRLAERLREK----------GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVV 153 (289)
T ss_dssp EEEECSCCCHHHHHHHHHHHHTT----------TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeE
Confidence 99999999999988888887641 268899999888887778888888899999999999999 9998888
Q ss_pred eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc
Q 022237 161 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF 240 (300)
Q Consensus 161 ~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (300)
++++.+.+..+|++.|.+.+.++.++.|++.++++.|++++++.+++..+...++++.... ++ .+..+++.++|
T Consensus 154 ~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~~----~~l~~~~~~g~ 227 (289)
T 2cvz_A 154 HVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLI--PQ----RVLTRAFPKTF 227 (289)
T ss_dssp EEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTH--HH----HTTTSCCCCSS
T ss_pred EcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhc--cc----hhhcCCCCCCc
Confidence 9988899999999999999999999999999999999999999999988765555433221 10 13456788899
Q ss_pred chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 241 ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 241 ~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
+++...||++.+.++++++|+++|+.++++++++++.+.|+|++||+++++.+.+
T Consensus 228 ~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~ 282 (289)
T 2cvz_A 228 ALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER 282 (289)
T ss_dssp BHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998864
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=256.62 Aligned_cols=264 Identities=21% Similarity=0.302 Sum_probs=218.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcC---CEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS---DVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~a---diVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||.+||++|+++||+|++|||++++++.+.+.|+..+.+++++++++ |+||+|||++ .+++++.++... ..
T Consensus 33 mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl~~l~~~-----l~ 106 (358)
T 4e21_A 33 MGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSMLQRMTPL-----LA 106 (358)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHHHHHGGG-----CC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHHHHHHhh-----CC
Confidence 79999999999999999999999999999999999889999999999 9999999998 888888643322 34
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcC-
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG- 156 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg- 156 (300)
++++|||+||+.|.+++++.+.+.+. +++|+++|++|++..+..|. ++++||+++++++++++|+.++
T Consensus 107 ~g~iiId~st~~~~~~~~~~~~l~~~----------g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg~ 175 (358)
T 4e21_A 107 ANDIVIDGGNSHYQDDIRRADQMRAQ----------GITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAP 175 (358)
T ss_dssp TTCEEEECSSCCHHHHHHHHHHHHTT----------TCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHSC
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHC----------CCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhcc
Confidence 56899999999999999998887652 37999999999999999998 9999999999999999999999
Q ss_pred -------------------CCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------
Q 022237 157 -------------------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--------------------- 196 (300)
Q Consensus 157 -------------------~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--------------------- 196 (300)
..++++|+.|+++.+|+++|.+.+..+.+++|++.++++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~ 255 (358)
T 4e21_A 176 GIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDF 255 (358)
T ss_dssp CGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGG
T ss_pred ccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchh
Confidence 5789999999999999999999999999999999999998
Q ss_pred ---CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCCCCCCc-chhhHHHH---HHHHHHHHHHcCCCchHHHH
Q 022237 197 ---GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGF-ASKLMAKD---LNLALASAKEVGVDCPLTSQ 268 (300)
Q Consensus 197 ---Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kd---~~~~~~~a~~~g~~~~~~~~ 268 (300)
|+|.+++++.++.++ ..||+++.... .+. ++ +.+ .+....|| .+.....+.+.|+|+|.+.+
T Consensus 256 ~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~---~~~-----~~--p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~ 325 (358)
T 4e21_A 256 YRYDLDLADITEVWRRGSVISSWLLDLSAT---ALL-----DS--PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSS 325 (358)
T ss_dssp CCCCCCHHHHHHHHTTTSTTCBHHHHHHHH---HHH-----HC--TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHH
T ss_pred cccCCCHHHHHHHHhCccHHHHHHHHHHHH---HHh-----hC--CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHH
Confidence 899999999999987 78998764321 111 11 111 11222233 37799999999999999986
Q ss_pred HHHHHHHHHHcCCCCCchHH-HHHHHhc
Q 022237 269 AQDIYAKLCENGHDSKDFSC-VFQHYYG 295 (300)
Q Consensus 269 ~~~~~~~a~~~g~g~~d~~~-~~~~~~~ 295 (300)
+. +.+... .+..++++ ++..+++
T Consensus 326 al--~~~~~s--~~~~~~~~~l~~a~r~ 349 (358)
T 4e21_A 326 AL--YERFSS--RGEDDFANRLLSAMRY 349 (358)
T ss_dssp HH--HHHHHH--TTTTHHHHHHHHHHC-
T ss_pred HH--HHHHHH--CCCcccHHHHHHHHHH
Confidence 53 333333 35666654 7776654
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=259.72 Aligned_cols=253 Identities=17% Similarity=0.224 Sum_probs=208.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC---C--CCCCHHHHhh---cCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV---P--TKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~---~--~~~~~~e~~~---~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||++||++|+++||+|++|||++++++.+.+.+. . .+.+++|+++ ++|+||+|||.+..+++++.++.+.
T Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~-- 92 (484)
T 4gwg_A 15 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPL-- 92 (484)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHHHHHHHHHh--
Confidence 8999999999999999999999999999987642 2 3578999887 4999999999987888888654333
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
..++++|||+||+.|.+++++.+.+.+. +++|+++|++|++..+..|. .+++||+++++++++++|
T Consensus 93 ---L~~g~iIId~st~~~~~t~~~~~~l~~~----------Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll 158 (484)
T 4gwg_A 93 ---LDTGDIIIDGGNSEYRDTTRRCRDLKAK----------GILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIF 158 (484)
T ss_dssp ---CCTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHH
T ss_pred ---cCCCCEEEEcCCCCchHHHHHHHHHHhh----------ccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHH
Confidence 3456899999999999999888877652 37999999999999999999 899999999999999999
Q ss_pred HhcCCCe-------EeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---HhcCCCccccccCC
Q 022237 153 LSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYN 221 (300)
Q Consensus 153 ~~lg~~~-------~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~---~~~~~~s~~~~~~~ 221 (300)
+.++.++ +++|+.|+++.+||++|.+.++.+++++|++.++++ .|+|++++.+++ +.+.+.||+++...
T Consensus 159 ~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~ 238 (484)
T 4gwg_A 159 QGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA 238 (484)
T ss_dssp HHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHH
T ss_pred HHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHH
Confidence 9999887 899999999999999999999999999999999999 999999998875 67778899877553
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHcCCCchHH-HHHHHHHHHH
Q 022237 222 PVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCPLT-SQAQDIYAKL 276 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~~~~-~~~~~~~~~a 276 (300)
+. +..+|+++++.++... |+. ....+.+.++|+|+|++ .++..++.++
T Consensus 239 ~~-------l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~ 293 (484)
T 4gwg_A 239 NI-------LKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 293 (484)
T ss_dssp HH-------HHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HH-------HhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence 21 2334555445555433 222 34567788999999954 4666776665
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=254.61 Aligned_cols=251 Identities=18% Similarity=0.227 Sum_probs=214.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----CCCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----~g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||++||.+|+++||+|++|||++++++++.+ .|+..+.++++++++ +|+||+|||++..+++++.++.+.+
T Consensus 21 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l- 99 (497)
T 2p4q_A 21 MGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLL- 99 (497)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHHHHHHHHhC-
Confidence 8999999999999999999999999999987 577778899999887 9999999999778898986543332
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
.++++|||+||+.|..++++.+.+.+. +++|+++|+++++..+..|+ ++++|++++.+++++++|
T Consensus 100 ----~~g~iIId~s~~~~~~~~~l~~~l~~~----------g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll 164 (497)
T 2p4q_A 100 ----EKGDIIIDGGNSHFPDSNRRYEELKKK----------GILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIF 164 (497)
T ss_dssp ----CTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHH
T ss_pred ----CCCCEEEECCCCChhHHHHHHHHHHHc----------CCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHH
Confidence 456899999999999998888877642 27899999999999999998 888999999999999999
Q ss_pred HhcCCC------eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---HhcCCCccccccCCC
Q 022237 153 LSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYNP 222 (300)
Q Consensus 153 ~~lg~~------~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~---~~~~~~s~~~~~~~~ 222 (300)
+.+|.+ +.++|+.|.+..+|+++|.+.+..+++++|++.++++ .|++++++.+++ +.+.+.||+++.+.+
T Consensus 165 ~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~ 244 (497)
T 2p4q_A 165 QSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRD 244 (497)
T ss_dssp HHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHH
T ss_pred HHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 999987 7889988999999999999999999999999999999 699999999888 456677777664432
Q ss_pred CCCcccCCCCCCCCCCCcchhhHH-----HHHH-HHHHHHHHcCCCchHHHHHH-HHHH
Q 022237 223 VPGVMEGVPASRNYGGGFASKLMA-----KDLN-LALASAKEVGVDCPLTSQAQ-DIYA 274 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~g~~~~~~~~~~-~~~~ 274 (300)
.+..++|+++|.++... ||+. ...+.++++|+++|++..+. ..+.
T Consensus 245 -------~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~ 296 (497)
T 2p4q_A 245 -------ILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCL 296 (497)
T ss_dssp -------HHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred -------HHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 13456776678888777 7775 78899999999999998753 4443
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=237.92 Aligned_cols=249 Identities=14% Similarity=0.173 Sum_probs=199.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHhhcCCEEEEecCChh--
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSS-- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~e~~~~adiVii~vp~~~-- 58 (300)
||+++|.+|+++||+|++|||++++++.+++. | +..++++.+++++||+||+|||++.
T Consensus 19 vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvvii~Vptp~~~ 98 (446)
T 4a7p_A 19 VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRR 98 (446)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEEEEEcCCCCcc
Confidence 79999999999999999999999999988763 1 3456789999999999999999885
Q ss_pred --------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh
Q 022237 59 --------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 130 (300)
Q Consensus 59 --------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~ 130 (300)
.+++++.++ .+. .+++++||++||++|.+++++.+.+.+.+ . ..++.++.+|.+..+..+.
T Consensus 99 ~~~~~Dl~~v~~v~~~i---~~~--l~~g~iVV~~STv~pgtt~~l~~~l~e~~----~--~~d~~v~~~Pe~a~eG~a~ 167 (446)
T 4a7p_A 99 GDGHADLSYVFAAAREI---AEN--LTKPSVIVTKSTVPVGTGDEVERIIAEVA----P--NSGAKVVSNPEFLREGAAI 167 (446)
T ss_dssp TTCCBCTHHHHHHHHHH---HHS--CCSCCEEEECSCCCTTHHHHHHHHHHHHS----T--TSCCEEEECCCCCCTTSHH
T ss_pred ccCCccHHHHHHHHHHH---HHh--cCCCCEEEEeCCCCchHHHHHHHHHHHhC----C--CCCceEEeCcccccccchh
Confidence 477777543 322 34568999999999999999999887631 1 1246778888777655432
Q ss_pred c--Cce-EEEeccC-HHHHHHHHHHHHhcCCC---eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022237 131 A--GTL-TFMVGGS-EDAYQAAKPLFLSMGKN---TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 203 (300)
Q Consensus 131 ~--g~~-~~~~~g~-~~~~~~~~~ll~~lg~~---~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~ 203 (300)
. ... .+++|++ +++.++++++|+.++.. ++++++++.++..|+++|++.+.++++++|+..+|++.|+|++++
T Consensus 168 ~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~~v 247 (446)
T 4a7p_A 168 EDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQEV 247 (446)
T ss_dssp HHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 1 111 5677775 88999999999999875 578888999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 204 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 204 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
.++++.+..-++ ..+ +..++|...++.||+.++...++++|+++|+++++.++.+..
T Consensus 248 ~~~~~~~~rig~--~~l--------------~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~ 304 (446)
T 4a7p_A 248 SRGIGMDNRIGG--KFL--------------HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDAR 304 (446)
T ss_dssp HHHHHTSTTC-----CC--------------CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCC--ccC--------------CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999987641111 111 123578889999999999999999999999999998875543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=244.34 Aligned_cols=246 Identities=19% Similarity=0.264 Sum_probs=208.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||++||.+|+++||+|++|||++++++++.+. |+..+.++++++++ +|+||+|||.+..+++++.++.+.+
T Consensus 26 MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l-- 103 (480)
T 2zyd_A 26 MGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYL-- 103 (480)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHHHHHHGGGC--
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHHhhc--
Confidence 89999999999999999999999999998875 67778899999887 9999999999768899986543333
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHH
Q 022237 74 GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL 153 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~ 153 (300)
.++++|||+|+..+..++++.+.+.+. +++|+++|+++++..+..|. +++++++++.++.++++|+
T Consensus 104 ---~~g~iIId~s~g~~~~t~~l~~~l~~~----------g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~ 169 (480)
T 2zyd_A 104 ---DKGDIIIDGGNTFFQDTIRRNRELSAE----------GFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILT 169 (480)
T ss_dssp ---CTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHHH
T ss_pred ---CCCCEEEECCCCCHHHHHHHHHHHHHC----------CCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHHH
Confidence 456899999999999988888877642 27899999999999888888 8999999999999999999
Q ss_pred hcCCC-------eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---HhcCCCccccccCCC
Q 022237 154 SMGKN-------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---NSSSARCWSSDSYNP 222 (300)
Q Consensus 154 ~lg~~-------~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~---~~~~~~s~~~~~~~~ 222 (300)
.+|.+ +.++|+.|.+..+|+++|.+.+..+++++|++.++++ .|++++++.+++ +.+...|++.+...+
T Consensus 170 ~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~ 249 (480)
T 2zyd_A 170 KIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKD 249 (480)
T ss_dssp HHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHH
T ss_pred HHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 99987 7889999999999999999999999999999999999 699999999887 456667776554432
Q ss_pred CCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHcCCCchHHHHH
Q 022237 223 VPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCPLTSQA 269 (300)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~~~~~~~ 269 (300)
.+.+++|.++|.++... |+. ....+.++++|+++|++..+
T Consensus 250 -------~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 250 -------IFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES 295 (480)
T ss_dssp -------HHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred -------HHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence 12355776667777554 443 47889999999999999976
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=236.52 Aligned_cols=250 Identities=15% Similarity=0.106 Sum_probs=195.5
Q ss_pred ChHHHHHHHHhC-CC-eEEEEcCChh----hHHHHHhC---------------------C-CCCCCCHHHHhhcCCEEEE
Q 022237 1 MGFRMASNLMKA-GY-KMAVHDVNCN----VMKMFSDM---------------------G-VPTKETPFEVAEASDVVIT 52 (300)
Q Consensus 1 mG~~la~~l~~~-G~-~V~~~dr~~~----~~~~~~~~---------------------g-~~~~~~~~e~~~~adiVii 52 (300)
||.++|..|+++ || +|++||++++ +++.+++. | ...+++ .+++++||+||+
T Consensus 29 mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~ea~~~aDvVii 107 (478)
T 3g79_A 29 VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FSRISELDAVTL 107 (478)
T ss_dssp THHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GGGGGGCSEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HHHHhcCCEEEE
Confidence 899999999999 99 9999999999 88887652 2 223344 678899999999
Q ss_pred ecCChh--------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh-h-hhhhhccCCCCCceEEEecc
Q 022237 53 MLPSSS--------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS-N-CILKEKKDSWENPVMLDAPV 122 (300)
Q Consensus 53 ~vp~~~--------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~pv 122 (300)
|||++. +++.|.....++.+. .+++++||++||++|.+++++.+.+. + .++ ..-..+.++++|+
T Consensus 108 aVptp~~~~~~~~~dl~~v~~~~~~i~~~--l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~----~~~~d~~v~~~Pe 181 (478)
T 3g79_A 108 AIQTPFANPKDLEPDFSALIDGIRNVGKY--LKPGMLVVLESTITPGTTEGMAKQILEEESGL----KAGEDFALAHAPE 181 (478)
T ss_dssp CCCCCCCSSCCSSCCCHHHHHHHHHHHHH--CCTTCEEEECSCCCTTTTTTHHHHHHHHHHCC----CBTTTBEEEECCC
T ss_pred ecCCchhccCCccccHHHHHHHHHHHHhh--cCCCcEEEEeCCCChHHHHHHHHHHHHHhcCC----CcCCceeEEeCCc
Confidence 999983 232232222233332 34668999999999999999987543 2 110 0012378999999
Q ss_pred CCChHhhhcCce---EEEeccCHHHHHHHHHHHHhc-CCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 022237 123 SGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 198 (300)
Q Consensus 123 ~g~~~~~~~g~~---~~~~~g~~~~~~~~~~ll~~l-g~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi 198 (300)
+..+..+..+.+ .+++|++++.+++++++|+.+ +..++++++++.|+.+|+++|++.+.++++++|+..+|++.|+
T Consensus 182 ~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~Gi 261 (478)
T 3g79_A 182 RVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLALYCEAMGI 261 (478)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888776654443 678888999999999999999 7888999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCC-------chHHHHH
Q 022237 199 SASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVD-------CPLTSQA 269 (300)
Q Consensus 199 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~-------~~~~~~~ 269 (300)
|++++.++++.. |.+ ++..+.|.|+ |...|+.||+.++...++++|++ +++++++
T Consensus 262 D~~~v~~~~~~~----~~~------------ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~ 325 (478)
T 3g79_A 262 NVYDVRTGVDSL----KGE------------GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLA 325 (478)
T ss_dssp CHHHHHHHHHTS----CCS------------SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHH
T ss_pred CHHHHHHHHCCC----chh------------hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHH
Confidence 999999999854 211 0122345554 45679999999999999999987 8999988
Q ss_pred HHHH
Q 022237 270 QDIY 273 (300)
Q Consensus 270 ~~~~ 273 (300)
.++-
T Consensus 326 ~~iN 329 (478)
T 3g79_A 326 RKVN 329 (478)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=229.42 Aligned_cols=253 Identities=17% Similarity=0.175 Sum_probs=197.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--------------------CCCCCCCHHHHhhcCCEEEEecCChh--
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVVITMLPSSS-- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--------------------g~~~~~~~~e~~~~adiVii~vp~~~-- 58 (300)
||.++|..|+++||+|++||+++++++.+.+. ++..++++.++++++|+||+|||++.
T Consensus 13 vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvViiaVptp~~~ 92 (450)
T 3gg2_A 13 VGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGE 92 (450)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEEEEEcCCCccc
Confidence 79999999999999999999999999888762 13456788999999999999999984
Q ss_pred -------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc
Q 022237 59 -------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 131 (300)
Q Consensus 59 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~ 131 (300)
.+++++.++...+ +++++||++||++|.+++++.+.+.+.+.. .+....+.++.+|.+..+.....
T Consensus 93 ~~~~dl~~v~~v~~~i~~~l-----~~g~iVV~~STv~pgt~~~l~~~l~~~~~~--~~~~~d~~v~~~Pe~a~eG~~~~ 165 (450)
T 3gg2_A 93 DGSADMSYVLDAARSIGRAM-----SRYILIVTKSTVPVGSYRLIRKAIQEELDK--REVLIDFDIASNPEFLKEGNAID 165 (450)
T ss_dssp TSSBCCHHHHHHHHHHHHHC-----CSCEEEEECSCCCTTHHHHHHHHHHHHHHH--TTCCCCEEEEECCCCCCTTSHHH
T ss_pred CCCcChHHHHHHHHHHHhhC-----CCCCEEEEeeeCCCcchHHHHHHHHHhccc--cCcCcceeEEechhhhcccchhh
Confidence 6777775433332 456899999999999999998887653210 01112356677777665543311
Q ss_pred ---CceEEEecc-CHHHHHHHHHHHHhcCC--CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022237 132 ---GTLTFMVGG-SEDAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 205 (300)
Q Consensus 132 ---g~~~~~~~g-~~~~~~~~~~ll~~lg~--~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~ 205 (300)
....+++|+ +++++++++++|+.++. .++++++++.++.+|+++|++.+.++++++|+..+|++.|+|++++.+
T Consensus 166 ~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~ 245 (450)
T 3gg2_A 166 DFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGADVSMVRL 245 (450)
T ss_dssp HHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 111466776 58999999999999986 367788899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 206 ILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 206 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
+++.+.. |....+.| .++|...++.||+.++...++++|+++|+++++.++.+..
T Consensus 246 ~~~~~~r--ig~~~~~p--------------g~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~ 300 (450)
T 3gg2_A 246 GIGSDSR--IGSKFLYP--------------GCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQ 300 (450)
T ss_dssp HHHTSTT--TCSSSCCC--------------SSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHcCCCC--CCcccCCC--------------CCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9986531 11111111 2357788999999999999999999999999999875443
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=233.77 Aligned_cols=253 Identities=17% Similarity=0.212 Sum_probs=209.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----CCCCCCCCHHHHhh---cCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAE---ASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----~g~~~~~~~~e~~~---~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||++||.+|+++||+|.+|||++++++.+.+ .|+..+.+++++++ ++|+||+|||++..+++++.++.+.+
T Consensus 13 mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l- 91 (482)
T 2pgd_A 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLL- 91 (482)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHHHHHHHHhhc-
Confidence 8999999999999999999999999999987 56777789999875 89999999999778888886433333
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
.++++|||+++..+..++++.+.+.+. +++|+++|+++++..+..|+ .++++++++.++.++++|
T Consensus 92 ----~~g~iII~~s~~~~~~~~~l~~~l~~~----------g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll 156 (482)
T 2pgd_A 92 ----DIGDIIIDGGNSEYRDTMRRCRDLKDK----------GILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIF 156 (482)
T ss_dssp ----CTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHH
T ss_pred ----CCCCEEEECCCCCHHHHHHHHHHHHHc----------CCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHH
Confidence 345899999999998888887777541 27899999999998888888 778899999999999999
Q ss_pred HhcCCCe-------EeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHH---hcCCCccccccCC
Q 022237 153 LSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILN---SSSARCWSSDSYN 221 (300)
Q Consensus 153 ~~lg~~~-------~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-Gi~~~~~~~~~~---~~~~~s~~~~~~~ 221 (300)
+.+|.++ .++|+.|.+..+|+++|.+.+..+.+++|++.++++. |++++++.+++. .+...|++.+...
T Consensus 157 ~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~ 236 (482)
T 2pgd_A 157 QGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 236 (482)
T ss_dssp HHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHH
T ss_pred HHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHh
Confidence 9999876 6788889999999999999999999999999999999 999999999885 4445666655432
Q ss_pred CCCCcccCCCCCCCCCCCcchhhH------HHHHHHHHHHHHHcCCCchHHH-HHHHHHHHH
Q 022237 222 PVPGVMEGVPASRNYGGGFASKLM------AKDLNLALASAKEVGVDCPLTS-QAQDIYAKL 276 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~~~~~-~~~~~~~~a 276 (300)
+ .+..++|++++.++.. .++.+.+.++++++|+|+|+.. +++.++...
T Consensus 237 ~-------~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~ 291 (482)
T 2pgd_A 237 S-------ILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 291 (482)
T ss_dssp H-------HHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred H-------HhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence 1 1234566666766654 4677889999999999999996 677766444
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=230.87 Aligned_cols=242 Identities=19% Similarity=0.232 Sum_probs=178.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC-CHHHH---------------hhcCCEEEEecCChhh-----
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-TPFEV---------------AEASDVVITMLPSSSH----- 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~-~~~e~---------------~~~adiVii~vp~~~~----- 59 (300)
||.++|.+|+++||+|++||+++++++.+++....... .+++. +++||+||+|||++..
T Consensus 22 vGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~VpTp~~~~~~~ 101 (431)
T 3ojo_A 22 IGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYR 101 (431)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEECCCCCBCSSSSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEEEeCCCccccccC
Confidence 89999999999999999999999999999874322111 11111 3579999999999852
Q ss_pred ------hhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh-hhhhhccCCCCCceEEEeccCCChHhhhcC
Q 022237 60 ------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN-CILKEKKDSWENPVMLDAPVSGGVLAAEAG 132 (300)
Q Consensus 60 ------~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g 132 (300)
++.+.. ++.+. .+++++||+.||++|.+++++.+.+.+ .++. .-..+.++++|++..+..+..+
T Consensus 102 ~~Dl~~V~~~~~---~i~~~--l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~----~~~d~~v~~~Pe~~~~G~A~~~ 172 (431)
T 3ojo_A 102 SCDISLVMRALD---SILPF--LKKGNTIIVESTIAPKTMDDFVKPVIENLGFT----IGEDIYLVHCPERVLPGKILEE 172 (431)
T ss_dssp BBCCHHHHHHHH---HHGGG--CCTTEEEEECSCCCTTHHHHTHHHHHHTTTCC----BTTTEEEEECCCCCCTTSHHHH
T ss_pred CccHHHHHHHHH---HHHHh--CCCCCEEEEecCCChhHHHHHHHHHHHHcCCC----cCCCeEEEECCCcCCCcchhhc
Confidence 333333 34433 356789999999999999999887543 2110 0123689999998877665544
Q ss_pred ce---EEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 133 TL---TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 133 ~~---~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
.+ .+++|++++++++++++|+.++..++++++++.|+.+|+++|++.+.++++++|+..+|++.|+|++++.++++.
T Consensus 173 ~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~ 252 (431)
T 3ojo_A 173 LVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANK 252 (431)
T ss_dssp HHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcc
Confidence 43 678888999999999999999988888898999999999999999999999999999999999999999999986
Q ss_pred cCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 022237 210 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 272 (300)
Q Consensus 210 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~ 272 (300)
...- ..+.| .+||...|..||...+...+++.+ ++++++.++
T Consensus 253 ~~ri----~~l~p--------------G~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~i 294 (431)
T 3ojo_A 253 HPRV----NIHQP--------------GPGVGGHCLAVDPYFIIAKDPENA---KLIQTGREI 294 (431)
T ss_dssp STTC----CCCCC--------------CSCCCCCCBCSCC---------CC---HHHHHHHHH
T ss_pred CCCc----ccCCC--------------CCCccccchhhhHHHHHHHHHHHh---HHHHHHHHH
Confidence 5421 11122 134556678888888888888876 777777764
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=217.27 Aligned_cols=245 Identities=18% Similarity=0.191 Sum_probs=198.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcC--ChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr--~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||++|+.+|+++||+|++||| ++++++.+.+.|+. .++.++++++|+||+|||++...+.+ . .+.+. .+
T Consensus 11 mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~-~---~~~~~---~~ 81 (264)
T 1i36_A 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA-R---RAGRH---VR 81 (264)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH-H---HHHTT---CC
T ss_pred HHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH-H---HHHHh---cC
Confidence 799999999999999999999 78888888777776 67888899999999999998666554 2 23322 12
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCC
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 158 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~ 158 (300)
+ +|||+|++.|.+.+++.+.+.+ . + |+++|+.+++..+..|.. ++++++.. +++++ |+.+|.+
T Consensus 82 ~-~vi~~s~~~~~~~~~l~~~~~~------~----g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~ 144 (264)
T 1i36_A 82 G-IYVDINNISPETVRMASSLIEK------G----G--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLN 144 (264)
T ss_dssp S-EEEECSCCCHHHHHHHHHHCSS------S----E--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCE
T ss_pred c-EEEEccCCCHHHHHHHHHHHhh------C----C--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCe
Confidence 3 9999999999988888887653 1 2 789999999888888886 88888766 88899 9999998
Q ss_pred eEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCC
Q 022237 159 TIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYG 237 (300)
Q Consensus 159 ~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 237 (300)
++++++ +|.+..+|+++|++.+.++.++.|++.++++.|++++ .++.+..+.+.++... . +. +..++|.
T Consensus 145 ~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~~--~--~~-----~~~~~~~ 214 (264)
T 1i36_A 145 IEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRES--A--IS-----RLKSSCI 214 (264)
T ss_dssp EEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHHH--H--HH-----HHHHHHH
T ss_pred eEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHHH--H--HH-----HhcCCCC
Confidence 899987 8999999999999999999999999999999999987 7788887654444321 1 11 2345677
Q ss_pred CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCc
Q 022237 238 GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 285 (300)
Q Consensus 238 ~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d 285 (300)
++++ ..||++.+.+++++. +++|+.++++++++++.+.|++.+|
T Consensus 215 ~g~~---~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~ 258 (264)
T 1i36_A 215 HARR---RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA 258 (264)
T ss_dssp THHH---HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred cchh---hHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence 7766 689999999999999 9999999999999999999987766
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=229.58 Aligned_cols=246 Identities=21% Similarity=0.290 Sum_probs=204.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||++||.+|+++||+|.+|||++++++.+.+. |+..+.++++++++ +|+||+|||.+..+++++.++.+.+
T Consensus 16 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~vl~~l~~~l-- 93 (474)
T 2iz1_A 16 MGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLL-- 93 (474)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHHHHHHGGGC--
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHHHHHHHhhC--
Confidence 79999999999999999999999999988765 66677899998886 9999999999778888886443333
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHH
Q 022237 74 GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL 153 (300)
Q Consensus 74 ~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~ 153 (300)
.++++|||+++..+..++++.+.+.+ . +++|+++|+++++..+..|. +++++++++.++.++++|+
T Consensus 94 ---~~g~iiId~s~~~~~~~~~l~~~l~~------~----g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~ 159 (474)
T 2iz1_A 94 ---DIGDILIDGGNTHFPDTMRRNAELAD------S----GINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFE 159 (474)
T ss_dssp ---CTTCEEEECSCCCHHHHHHHHHHTTT------S----SCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHH
T ss_pred ---CCCCEEEECCCCCHHHHHHHHHHHHH------C----CCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHH
Confidence 35689999999999888888877653 1 37899999999988888888 7788999999999999999
Q ss_pred hcCCC--------eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCccccccCC
Q 022237 154 SMGKN--------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYN 221 (300)
Q Consensus 154 ~lg~~--------~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~ 221 (300)
.+|.+ +.++|+.|.+..+|+++|.+.+..+.+++|++.++++ .|++++++.+++. .+...|++.+...
T Consensus 160 ~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~ 239 (474)
T 2iz1_A 160 QIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITK 239 (474)
T ss_dssp HHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHH
T ss_pred HHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhh
Confidence 99987 5788889999999999999999999999999999999 7999999988884 3545666554332
Q ss_pred CCCCcccCCCCCCCCCCC-cchhhHH-----HHHH-HHHHHHHHcCCCchHHHHH
Q 022237 222 PVPGVMEGVPASRNYGGG-FASKLMA-----KDLN-LALASAKEVGVDCPLTSQA 269 (300)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~-~~~~~~~-----kd~~-~~~~~a~~~g~~~~~~~~~ 269 (300)
+ .+..+||.++ |.++... |+.. ...+.++++|+++|+...+
T Consensus 240 ~-------~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a 287 (474)
T 2iz1_A 240 E-------VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES 287 (474)
T ss_dssp H-------HTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred h-------HhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence 2 1235677665 7777544 6655 6789999999999999976
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=226.52 Aligned_cols=246 Identities=17% Similarity=0.279 Sum_probs=201.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-C-------CCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-------VPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g-------~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||++||.+|+++||+|++|||++++++.+.+. | +..+.++++++++ +|+||+|||.+..+++++.++.+
T Consensus 12 mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~ 91 (478)
T 1pgj_A 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKK 91 (478)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHHHHHHHHHHHh
Confidence 89999999999999999999999999988764 5 5567789898874 99999999997688888854333
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHH
Q 022237 70 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 149 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~ 149 (300)
.+ .++++|||+++..+..++++.+.+.+ . +++|+++|+++++..+..|. .++++++++.++.++
T Consensus 92 ~l-----~~g~iIId~sng~~~~~~~l~~~l~~------~----g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~ 155 (478)
T 1pgj_A 92 VF-----EKGDILVDTGNAHFKDQGRRAQQLEA------A----GLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIR 155 (478)
T ss_dssp HC-----CTTCEEEECCCCCHHHHHHHHHHHHT------T----TCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHH
T ss_pred hC-----CCCCEEEECCCCChHHHHHHHHHHHH------C----CCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHH
Confidence 33 34589999999999888888877754 1 37899999999988888888 788899999999999
Q ss_pred HHHHhcCCC-------eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH----hcCCCccccc
Q 022237 150 PLFLSMGKN-------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN----SSSARCWSSD 218 (300)
Q Consensus 150 ~ll~~lg~~-------~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~----~~~~~s~~~~ 218 (300)
++|+.+|.+ +.++|+.|.+..+|+++|.+.+..+.++.|++.++++.|++++++.+++. .+.+.|+..+
T Consensus 156 ~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~ 235 (478)
T 1pgj_A 156 PIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLD 235 (478)
T ss_dssp HHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHH
T ss_pred HHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHH
Confidence 999999987 68889899999999999999999999999999999999999999999886 4556666554
Q ss_pred cCCCCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHcCCCchHHHHH
Q 022237 219 SYNPVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCPLTSQA 269 (300)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~~~~~~~ 269 (300)
...+ + +.++++.+.+.++... |+. +.+.++++++|+++|+.+.+
T Consensus 236 ~~~~---~----l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~a 285 (478)
T 1pgj_A 236 ISIA---A----ARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMA 285 (478)
T ss_dssp HHHH---H----HHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred hhch---h----hhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHH
Confidence 3321 1 1234552226666554 444 69999999999999999983
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=216.05 Aligned_cols=236 Identities=15% Similarity=0.143 Sum_probs=189.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------------------CCCCCCCHHHHhhcCCEEEEecCChh----
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------GVPTKETPFEVAEASDVVITMLPSSS---- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~------------------g~~~~~~~~e~~~~adiVii~vp~~~---- 58 (300)
||.++|..|++ ||+|++||+++++++.+++. ++..++++.+++++||+||+|||++.
T Consensus 47 mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~ 125 (432)
T 3pid_A 47 VGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVIIATPTDYDPKT 125 (432)
T ss_dssp HHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEEECCCCEEETTT
T ss_pred HHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEEEeCCCcccccc
Confidence 79999999998 99999999999999888762 34556788999999999999999973
Q ss_pred ------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcC
Q 022237 59 ------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 132 (300)
Q Consensus 59 ------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g 132 (300)
.+++++.++.. + .++++||++||++|.+++++.+.+.+ ..+..+|+++.+..+..+
T Consensus 126 ~~~Dl~~V~~v~~~i~~-l-----~~g~iVV~~STv~pgtt~~l~~~l~~------------~~v~~sPe~~~~G~A~~~ 187 (432)
T 3pid_A 126 NYFNTSTVEAVIRDVTE-I-----NPNAVMIIKSTIPVGFTRDIKERLGI------------DNVIFSPEFLREGRALYD 187 (432)
T ss_dssp TEEECHHHHHHHHHHHH-H-----CTTSEEEECSCCCTTHHHHHHHHHTC------------CCEEECCCCCCTTSHHHH
T ss_pred ccccHHHHHHHHHHHHh-c-----CCCcEEEEeCCCChHHHHHHHHHHhh------------ccEeecCccCCcchhhhc
Confidence 45666654332 2 34589999999999999999987753 245669999999888877
Q ss_pred ce---EEEeccCHHHHHHHHHHHHh--cCCC-eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022237 133 TL---TFMVGGSEDAYQAAKPLFLS--MGKN-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 206 (300)
Q Consensus 133 ~~---~~~~~g~~~~~~~~~~ll~~--lg~~-~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 206 (300)
.+ .+++|++++.++++.++|.. ++.. +++.++++.|+.+|+++|++.+.++++++|+..+|++.|+|++++.++
T Consensus 188 ~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~ 267 (432)
T 3pid_A 188 NLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEG 267 (432)
T ss_dssp HHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 76 78999999999999999987 4432 456678899999999999999999999999999999999999999999
Q ss_pred HHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 022237 207 LNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 273 (300)
Q Consensus 207 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~ 273 (300)
++....-+. ....| .+||...|+.||...+... ..|++.++++++.++-
T Consensus 268 ~~~dprig~--~~~~p--------------g~G~GG~C~pkD~~~L~~~--~~~~~~~li~~~~~~N 316 (432)
T 3pid_A 268 VCLDPRIGN--HYNNP--------------SFGYGGYCLPKDTKQLLAN--YESVPNNIIAAIVDAN 316 (432)
T ss_dssp HHTSTTTCS--SSCCC--------------CSCCCTTTHHHHHHHHHHH--TTTSCCSHHHHHHHHH
T ss_pred HccCCCCCc--ccCCC--------------CCCCcccchhhhHHHHHHH--hcCCchhHHHHHHHHH
Confidence 986531000 00011 1256667999999988644 4688999999998753
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=215.27 Aligned_cols=250 Identities=16% Similarity=0.181 Sum_probs=190.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------------CCCCCCHHHHhhcCCEEEEecCCh---
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------------VPTKETPFEVAEASDVVITMLPSS--- 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------------~~~~~~~~e~~~~adiVii~vp~~--- 57 (300)
||+++|..|+++||+|++||+++++++.+++.+ +..+++++++++++|+||+|||+|
T Consensus 19 vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvviiaVptp~~~ 98 (478)
T 2y0c_A 19 VGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDE 98 (478)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEEEEEeCCCccc
Confidence 799999999999999999999999999987652 234567778899999999999996
Q ss_pred ------hhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCC-CCceEEEeccCCChHhhh
Q 022237 58 ------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW-ENPVMLDAPVSGGVLAAE 130 (300)
Q Consensus 58 ------~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pv~g~~~~~~ 130 (300)
..+++++.++...+ .++++||+.||++|.+.+++.+.+.+. +. .+.+ ..+..+..|.+..+....
T Consensus 99 ~~~~dl~~v~~v~~~i~~~l-----~~~~iVV~~STv~~gt~~~l~~~l~~~-~~--~g~~~~~~~v~~~Pe~~~eG~~~ 170 (478)
T 2y0c_A 99 DGSADLQYVLAAARNIGRYM-----TGFKVIVDKSTVPVGTAERVRAAVAEE-LA--KRGGDQMFSVVSNPEFLKEGAAV 170 (478)
T ss_dssp TSSBCCHHHHHHHHHHHHHC-----CSCEEEEECSCCCTTHHHHHHHHHHHH-HH--HTTCCCCEEEEECCCCCCTTCHH
T ss_pred CCCccHHHHHHHHHHHHHhc-----CCCCEEEEeCCcCCCchHHHHHHHHHH-hc--CCCCCccEEEEEChhhhccccee
Confidence 57888876543333 456899999999999999988887652 00 1100 123445556544433221
Q ss_pred c---CceEEEeccC-H----HHHHHHHHHHHhcCC--CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 022237 131 A---GTLTFMVGGS-E----DAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 200 (300)
Q Consensus 131 ~---g~~~~~~~g~-~----~~~~~~~~ll~~lg~--~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~ 200 (300)
. ....+++|++ + +..+.++++|+.+.. .++++++++.++..|++.|.+.+.++++++|+..+|++.|+|+
T Consensus 171 ~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~~Gid~ 250 (478)
T 2y0c_A 171 DDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLADRFGADI 250 (478)
T ss_dssp HHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred eccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 0 1114666764 5 788999999998875 5788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 201 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 201 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
+++.+.++.... +..+.+.++ +...+..||+..+.++++++|+++|+.++++++++..
T Consensus 251 ~~v~~~i~~~~r------------------ig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~ 310 (478)
T 2y0c_A 251 EAVRRGIGSDPR------------------IGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQ 310 (478)
T ss_dssp HHHHHHHHTSTT------------------TCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc------------------cCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence 999988874310 011233343 3445789999999999999999999999999987654
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=212.14 Aligned_cols=245 Identities=12% Similarity=0.130 Sum_probs=189.6
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCC-------------------CCCCCCHHHHhhcCCEEEEecCChh-
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASDVVITMLPSSS- 58 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~~~g-------------------~~~~~~~~e~~~~adiVii~vp~~~- 58 (300)
||+++|.+|+++ ||+|++|||++++++.+.+.+ ...++++.++++++|+||+|||++.
T Consensus 20 vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDvvii~Vptp~~ 99 (481)
T 2o3j_A 20 VGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTK 99 (481)
T ss_dssp THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSEEEECCCCCBC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCEEEEecCCccc
Confidence 899999999998 799999999999999887521 2345577788899999999999874
Q ss_pred -------------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh-hhhhhccCCCCCceEEEeccCC
Q 022237 59 -------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN-CILKEKKDSWENPVMLDAPVSG 124 (300)
Q Consensus 59 -------------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pv~g 124 (300)
.+++++.++... ..++++||++||+.|.+++++.+.+.+ .+.. . ...+.+..+|.+.
T Consensus 100 ~~g~~~~~~~dl~~v~~~~~~i~~~-----l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~--~--~~d~~v~~~Pe~~ 170 (481)
T 2o3j_A 100 MYGRGKGMAPDLKYVESVSRTIAQY-----AGGPKIVVEKSTVPVKAAESIGCILREAQKNN--E--NLKFQVLSNPEFL 170 (481)
T ss_dssp CSSTTTTTSBCCHHHHHHHHHHHHH-----CCSCEEEEECSCCCTTHHHHHHHHHHHHTC--------CCEEEEECCCCC
T ss_pred cccccccCCCcHHHHHHHHHHHHHh-----CCCCCEEEECCCCCCCHHHHHHHHHHHhhCcC--c--CCceEEEeCcccc
Confidence 255565433222 245689999999999999998888764 2100 0 0124567788877
Q ss_pred ChHhhhcCce---EEEeccCH-----HHHHHHHHHHHhcCC-CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 125 GVLAAEAGTL---TFMVGGSE-----DAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 195 (300)
Q Consensus 125 ~~~~~~~g~~---~~~~~g~~-----~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~ 195 (300)
.+..+..+.. .+++|++. +++++++++|+.++. .++++++++.++..|++.|++.+.++++++|+..+|++
T Consensus 171 ~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~ 250 (481)
T 2o3j_A 171 AEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEA 250 (481)
T ss_dssp CTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655432211 56677753 578899999999996 77888889999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCC--chHHHHHHH
Q 022237 196 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVD--CPLTSQAQD 271 (300)
Q Consensus 196 ~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~--~~~~~~~~~ 271 (300)
.|+|++++.++++.+.. +. .+.|.| +|...++.||+.++..++++.|++ +|+++++.+
T Consensus 251 ~Gid~~~v~~~~~~~~r--i~----------------~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~ 312 (481)
T 2o3j_A 251 TGAEISEVAHAVGYDTR--IG----------------SKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVIN 312 (481)
T ss_dssp HSCCHHHHHHHHHTSTT--TC----------------SSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHccCCC--CC----------------CCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 99999999999986531 11 112334 346778999999999999999999 999988876
Q ss_pred H
Q 022237 272 I 272 (300)
Q Consensus 272 ~ 272 (300)
+
T Consensus 313 ~ 313 (481)
T 2o3j_A 313 I 313 (481)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=215.29 Aligned_cols=231 Identities=14% Similarity=0.179 Sum_probs=178.1
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHHh-------------------CCCCCCCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD-------------------MGVPTKETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||+++|.+|+++ ||+|++|||++++++.+.+ .++..++++.++++++|+||+|||++..
T Consensus 16 mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDvViiaVptp~~ 95 (467)
T 2q3e_A 16 VGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTK 95 (467)
T ss_dssp THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSEEEECCCCCBC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCEEEEEcCCchh
Confidence 899999999999 8999999999999888643 2344567888899999999999998865
Q ss_pred hhh--------------hhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCC
Q 022237 60 VLD--------------VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 125 (300)
Q Consensus 60 ~~~--------------v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~ 125 (300)
.+. ++.+ +.+. ..++++||++||+.|.+.+++.+.+.+. + ..+++.++.++
T Consensus 96 ~~~v~~~~~~dl~~v~~~~~~---i~~~--l~~g~iVV~~STv~~g~~~~l~~~l~~~------~----~~~~d~~V~~~ 160 (467)
T 2q3e_A 96 TYGMGKGRAADLKYIEACARR---IVQN--SNGYKIVTEKSTVPVRAAESIRRIFDAN------T----KPNLNLQVLSN 160 (467)
T ss_dssp CSSTTTTTSBCCHHHHHHHHH---HHHT--CCSEEEEEECSCCCTTHHHHHHHHHHHT------C----CTTCEEEEEEC
T ss_pred hccccccCCCcHHHHHHHHHH---HHhh--CCCCCEEEECCcCCchHHHHHHHHHHHh------C----CCCCCeEEEeC
Confidence 432 2222 2221 2456899999999999999988877652 1 12244444444
Q ss_pred hHhhhcCceE--------EEecc-----CHHHHHHHHHHHHhc-CCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 126 VLAAEAGTLT--------FMVGG-----SEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALT 191 (300)
Q Consensus 126 ~~~~~~g~~~--------~~~~g-----~~~~~~~~~~ll~~l-g~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~ 191 (300)
|.....|... +++|+ +++..++++++|+.+ +..++++++++.++..|++.|.+.+.++++++|+..
T Consensus 161 Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~ 240 (467)
T 2q3e_A 161 PEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISA 240 (467)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445533 67787 678899999999999 667888888999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC
Q 022237 192 LGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD 262 (300)
Q Consensus 192 l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~ 262 (300)
+|++.|+|++++.++++.+.. +....+.| .++|...++.||+.++...++++|++
T Consensus 241 l~~~~Gid~~~v~~~~~~~~~--~~~~~~~p--------------g~g~gg~c~~kD~~~l~~~a~~~g~~ 295 (467)
T 2q3e_A 241 LCEATGADVEEVATAIGMDQR--IGNKFLKA--------------SVGFGGSCFQKDVLNLVYLCEALNLP 295 (467)
T ss_dssp HHHHHTCCHHHHHHHHHTSTT--TCSSSCCC--------------CSCCCSSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhCcCHHHHHHHHcCCCC--CCccccCC--------------CCCCCCccHHHHHHHHHHHHHHcCCc
Confidence 999999999999999986542 11111111 12356678999999999999999987
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=208.11 Aligned_cols=252 Identities=13% Similarity=0.110 Sum_probs=188.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHhhcCCEEEEecCChhh-
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSSH- 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~e~~~~adiVii~vp~~~~- 59 (300)
||+++|..|+++||+|++|||++++++.+.+. | +..++++.++++++|+||+|||++..
T Consensus 11 vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvviiaVptp~~~ 90 (436)
T 1mv8_A 11 VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKK 90 (436)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEEEEcCCCccc
Confidence 89999999999999999999999999988763 2 34566888889999999999999854
Q ss_pred --------hhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHH-HHHHHHHHhhhhhhhccCCC--CCceEEEeccCCChHh
Q 022237 60 --------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT-SRNISAAVSNCILKEKKDSW--ENPVMLDAPVSGGVLA 128 (300)
Q Consensus 60 --------~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pv~g~~~~ 128 (300)
+++++.++...+.. ..++++||++||+.|.+ .+.+.+.+.+. .+.. .++.....|.+-.+..
T Consensus 91 ~~~~dl~~v~~v~~~i~~~l~~--~~~~~iVV~~Stv~~g~t~~~l~~~l~~~-----~g~~~~~~~~v~~~Pe~~~~G~ 163 (436)
T 1mv8_A 91 NGDLDLGYIETVCREIGFAIRE--KSERHTVVVRSTVLPGTVNNVVIPLIEDC-----SGKKAGVDFGVGTNPEFLREST 163 (436)
T ss_dssp TSSBCCHHHHHHHHHHHHHHTT--CCSCCEEEECSCCCTTHHHHTHHHHHHHH-----HSCCBTTTBEEEECCCCCCTTS
T ss_pred CCCcchHHHHHHHHHHHHHhcc--cCCCcEEEEeCCcCCCchHHHHHHHHHHh-----cCcccCCcEEEEECcccccccc
Confidence 77777544333321 00168999999999988 67777776542 0100 1234455565544332
Q ss_pred hh---cCceEEEeccC-HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 022237 129 AE---AGTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 204 (300)
Q Consensus 129 ~~---~g~~~~~~~g~-~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 204 (300)
.. .....+++|++ ++..+.++++++.++..+++ ++++.+...|++.|.+.+..+++++|+..+|++.|+|.+++.
T Consensus 164 ~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~ 242 (436)
T 1mv8_A 164 AIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVM 242 (436)
T ss_dssp HHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 21 11114566765 88899999999999986554 778999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 205 KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 205 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
++++... .+. + ..+++.+ +|...+..||+..+..+++++|+++|+.++++++.+..
T Consensus 243 ~~~~~~~--r~~-----~---------~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~ 300 (436)
T 1mv8_A 243 DVICQDH--KLN-----L---------SRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQ 300 (436)
T ss_dssp HHHTTCT--TTT-----T---------SSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHH
T ss_pred HHhcCCC--CCC-----C---------cccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHh
Confidence 9887432 010 0 0123333 56777899999999999999999999999998875543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=196.27 Aligned_cols=236 Identities=16% Similarity=0.115 Sum_probs=184.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC------------------CCCCCHHHHhhcCCEEEEecCChh----
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV------------------PTKETPFEVAEASDVVITMLPSSS---- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~------------------~~~~~~~e~~~~adiVii~vp~~~---- 58 (300)
||+++|..|++ ||+|++|||++++++.+.+.+. ..++++.++++++|+||+|||++.
T Consensus 11 vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviiavpt~~~~~~ 89 (402)
T 1dlj_A 11 VGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIATPTNYNSRI 89 (402)
T ss_dssp HHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEECCCCCEETTT
T ss_pred HHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEecCCCcccCC
Confidence 79999999999 9999999999999999987664 334577788899999999999984
Q ss_pred ------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcC
Q 022237 59 ------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 132 (300)
Q Consensus 59 ------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g 132 (300)
.+++++..+.. + .++++||++||+.|.+.+++.+.+.+ -.++.+|.+..+..+..+
T Consensus 90 ~~~dl~~v~~v~~~i~~-l-----~~~~iVV~~ST~~~g~~~~l~~~~~~------------~~v~~~Pe~~~~G~a~~~ 151 (402)
T 1dlj_A 90 NYFDTQHVETVIKEVLS-V-----NSHATLIIKSTIPIGFITEMRQKFQT------------DRIIFSPEFLRESKALYD 151 (402)
T ss_dssp TEECCHHHHHHHHHHHH-H-----CSSCEEEECSCCCTTHHHHHHHHTTC------------SCEEECCCCCCTTSTTHH
T ss_pred CCccHHHHHHHHHHHHh-h-----CCCCEEEEeCCCCccHHHHHHHHhCC------------CeEEECCccccCcchhhc
Confidence 47777754433 3 24589999999999999998877642 156788887766554322
Q ss_pred ce---EEEeccCH-------HHHHHHHHHHHh-cCC-C-eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 022237 133 TL---TFMVGGSE-------DAYQAAKPLFLS-MGK-N-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 199 (300)
Q Consensus 133 ~~---~~~~~g~~-------~~~~~~~~ll~~-lg~-~-~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~ 199 (300)
.. .+++|+++ +..+.+.++|.. ... . +++.++++.++..|++.|.+.+.++++++|+..+|++.|+|
T Consensus 152 ~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid 231 (402)
T 1dlj_A 152 NLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLN 231 (402)
T ss_dssp HHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22 36778765 566777888865 322 2 57778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022237 200 ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 200 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~ 275 (300)
.+++.++++.+.. . . .+.+.| +|...++.||+..+...++ |+++|+++++.++-+.
T Consensus 232 ~~~v~~~~~~~~r---i----~-----------~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~ 289 (402)
T 1dlj_A 232 SHMIIQGISYDDR---I----G-----------MHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNV 289 (402)
T ss_dssp HHHHHHHHHTSTT---T----C-----------SSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCC---C----C-----------cCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHH
Confidence 9999999986541 1 1 111223 6777899999999998885 8899999998875443
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=184.48 Aligned_cols=251 Identities=15% Similarity=0.151 Sum_probs=186.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------------------C-CCCCCCHHHHhhcCCEEEEecCChh--
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVVITMLPSSS-- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------------------g-~~~~~~~~e~~~~adiVii~vp~~~-- 58 (300)
||.++|..|++.||+|+++|.++++++.+++. | ...++++.++++++|++|+|||+|.
T Consensus 32 VGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~~I~VpTP~~~ 111 (444)
T 3vtf_A 32 VGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDATFIAVGTPPAP 111 (444)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCceEEEecCCCCC
Confidence 58999999999999999999999999887642 1 3456788899999999999999873
Q ss_pred -------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc
Q 022237 59 -------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 131 (300)
Q Consensus 59 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~ 131 (300)
.++.+...+...+.. ..++++||..||++|.+++++...+.+. ..+ -..+....+|.+-.+..+..
T Consensus 112 d~~~Dl~~v~~a~~~I~~~l~~--~~~g~lVV~eSTVppGtte~~~~~~l~~----~~~-~~~f~v~~~PErl~eG~a~~ 184 (444)
T 3vtf_A 112 DGSADLRYVEAAARAVGRGIRA--KGRWHLVVVKSTVPPGTTEGLVARAVAE----EAG-GVKFSVASNPEFLREGSALE 184 (444)
T ss_dssp TSSBCCHHHHHHHHHHHHHHHH--HCSCCEEEECSCCCTTTTTTHHHHHHHT----TTT-TCCCEEEECCCCCCTTSHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhh--cCCCeEEEEeCCCCCchHHHHHHHHHHH----hCC-CCCceeecCcccccCCcccc
Confidence 233333333233321 1246899999999999998865543321 111 12366777898766554332
Q ss_pred ---CceEEEecc-CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022237 132 ---GTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 207 (300)
Q Consensus 132 ---g~~~~~~~g-~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 207 (300)
..-.+++|+ ++.+.+.++++++.+...++++ ++..|++.|++.|.+.+.++++++|...+|++.|+|..++.+++
T Consensus 185 d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~-~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~GiDv~eV~~a~ 263 (444)
T 3vtf_A 185 DFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVM-KPREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYRVFEAV 263 (444)
T ss_dssp HHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEe-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 112345554 6778899999999988766655 45899999999999999999999999999999999999999999
Q ss_pred HhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022237 208 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 208 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~ 275 (300)
+....-++ ..+.| .+||...|..||...+...++++|++.++++++.++-+.
T Consensus 264 ~~d~rig~--~~l~P--------------G~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~ 315 (444)
T 3vtf_A 264 GLDKRIGR--HYFGA--------------GLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEY 315 (444)
T ss_dssp HTSTTSCS--TTCCC--------------SSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ccCCCCCC--CCCCC--------------CCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHH
Confidence 86431111 11122 235666789999999999999999999999998876443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.2e-25 Score=197.17 Aligned_cols=269 Identities=15% Similarity=0.074 Sum_probs=192.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC--------------CCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV--------------PTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~--------------~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+++|..|+++||+|++|+|++++++.+.+.+. ..+.++.++++++|+||+|||.+ .+++++.+
T Consensus 40 mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp~~-~~~~vl~~ 118 (356)
T 3k96_A 40 WGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSF-AFHEVITR 118 (356)
T ss_dssp HHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCCHH-HHHHHHHH
Confidence 7999999999999999999999999998877542 23568889999999999999987 88999876
Q ss_pred CCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHH
Q 022237 67 PNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 145 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~ 145 (300)
+.+.+ +++++||++++ +.+.+ +.+.+.+.+. .+ ...+.++.+|.+.........+..++.+.+++..
T Consensus 119 i~~~l-----~~~~ivvs~~kGi~~~t-~~~se~i~~~-----l~-~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~~ 186 (356)
T 3k96_A 119 MKPLI-----DAKTRIAWGTKGLAKGS-RLLHEVVATE-----LG-QVPMAVISGPSLATEVAANLPTAVSLASNNSQFS 186 (356)
T ss_dssp HGGGC-----CTTCEEEECCCSCBTTT-BCHHHHHHHH-----HC-SCCEEEEESSCCHHHHHTTCCEEEEEEESCHHHH
T ss_pred HHHhc-----CCCCEEEEEeCCCCcCc-cCHHHHHHHH-----cC-CCCEEEEECccHHHHHHcCCCeEEEEecCCHHHH
Confidence 55444 34578887765 66654 5555555431 01 0135688899887766665566566667789999
Q ss_pred HHHHHHHHhcCCCeEeeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 146 QAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 146 ~~~~~ll~~lg~~~~~~g~~-----------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
++++++|+..+.+++...++ |.+..+|+..|...+....+++|+.+++++.|+++++++++..
T Consensus 187 ~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g 266 (356)
T 3k96_A 187 KDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLAG 266 (356)
T ss_dssp HHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTT
T ss_pred HHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcccch
Confidence 99999999888777665552 4455678889999999999999999999999999999885422
Q ss_pred hcC----CCccccccCCCCCCcccCCCCCCCCCC----CcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 209 SSS----ARCWSSDSYNPVPGVMEGVPASRNYGG----GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 209 ~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
.+. +.|..++++..+..+.++ ..++. ...+.+..++.+.+.++++++|+++|+++++++++.
T Consensus 267 ~gDl~~tc~s~~sRN~~~G~~l~~g----~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~------ 336 (356)
T 3k96_A 267 LGDLVLTCTDNQSRNRRFGLALGEG----VDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILH------ 336 (356)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHT----CCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH------
T ss_pred hhHHHHhccCCCCccHHHHHHHHCC----CCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHh------
Confidence 221 122333333221111111 01110 023457889999999999999999999999999874
Q ss_pred CCCCchHHHHHHH
Q 022237 281 HDSKDFSCVFQHY 293 (300)
Q Consensus 281 ~g~~d~~~~~~~~ 293 (300)
+..+....++.|
T Consensus 337 -~~~~~~~~~~~l 348 (356)
T 3k96_A 337 -EDLDPQQAVQEL 348 (356)
T ss_dssp -SCCCHHHHHHHH
T ss_pred -CCCCHHHHHHHH
Confidence 444544444443
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-21 Score=175.04 Aligned_cols=261 Identities=14% Similarity=0.118 Sum_probs=174.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-----------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g-----------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||++||.+|+++||+|++|||++++++.+.+.| +..+.++.+ ++.+|+||+|||+ .++++++.++.+
T Consensus 25 mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~~~~~v~~~l~~ 102 (335)
T 1z82_A 25 WGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-QYIREHLLRLPV 102 (335)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-GGHHHHHTTCSS
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-HHHHHHHHHhCc
Confidence 799999999999999999999999999998776 345667888 8899999999997 599999875432
Q ss_pred cccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceE-EEeccCHHHHHH
Q 022237 70 LLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT-FMVGGSEDAYQA 147 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~-~~~~g~~~~~~~ 147 (300)
++++||+++ ++.+.+.+.+.+.+.+. .+ ....++..|...... ..|..+ +.+++++ ++.
T Consensus 103 --------~~~~vv~~~nGi~~~~~~~l~~~~~~~-----~~--~~~~~~~~P~~~~~~--~~g~~~~~~~g~~~--~~~ 163 (335)
T 1z82_A 103 --------KPSMVLNLSKGIEIKTGKRVSEIVEEI-----LG--CPYAVLSGPSHAEEV--AKKLPTAVTLAGEN--SKE 163 (335)
T ss_dssp --------CCSEEEECCCCCCTTTCCCHHHHHHHH-----TC--CCEEEEESSCCHHHH--HTTCCEEEEEEETT--HHH
T ss_pred --------CCCEEEEEeCCCCCCccCcHHHHHHHH-----cC--CceEEEECCccHHHH--hCCCceEEEEEehh--HHH
Confidence 347899998 56776666667666541 11 123445555543322 234433 3334433 789
Q ss_pred HHHHHHhcCCCeEeeCCc---c--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 148 AKPLFLSMGKNTIYCGGA---G--------------NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 148 ~~~ll~~lg~~~~~~g~~---g--------------~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
++++|+..+.++.+.+++ + ....+|+..|.+......++.|+..++++.|++++++.++...+
T Consensus 164 ~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~ 243 (335)
T 1z82_A 164 LQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIG 243 (335)
T ss_dssp HHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHH
T ss_pred HHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhccccccc
Confidence 999999988877766552 1 12334455788888899999999999999999998876531110
Q ss_pred ----CCCccccccCCCCCCcccCCCCCCCCC----CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCC
Q 022237 211 ----SARCWSSDSYNPVPGVMEGVPASRNYG----GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 282 (300)
Q Consensus 211 ----~~~s~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g 282 (300)
+..++.++++.....+..+ +.+. ..+......||+..+.+++++.|+++|+.+.++++++ .
T Consensus 244 ~~~~t~~s~~~~n~~~~~~~~~g----~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~-------~ 312 (335)
T 1z82_A 244 DLMVTCNSRYSRNRRFGELIARG----FNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVY-------E 312 (335)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHT----CCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------S
T ss_pred ceeeeccCccCcHHHHHHHHhCC----CCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------C
Confidence 0011111111000001000 0010 0123345789999999999999999999999999873 4
Q ss_pred CCchHHHHHHH
Q 022237 283 SKDFSCVFQHY 293 (300)
Q Consensus 283 ~~d~~~~~~~~ 293 (300)
..+...+++.|
T Consensus 313 ~~~~~~~~~~l 323 (335)
T 1z82_A 313 GKPPLQSMRDL 323 (335)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45666666655
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-21 Score=164.40 Aligned_cols=241 Identities=11% Similarity=0.079 Sum_probs=173.5
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||++++..|.++| ++|++|||++++++.+.+. |+....++.+++ ++|+||+||| +..+++++.++.. +
T Consensus 11 mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~l~~-------~- 80 (263)
T 1yqg_A 11 MAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKNIRT-------N- 80 (263)
T ss_dssp HHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTTCCC-------T-
T ss_pred HHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHHhcc-------C-
Confidence 7999999999999 9999999999999998775 877777788888 9999999999 6688888865422 2
Q ss_pred CeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHHhc
Q 022237 79 PQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSM 155 (300)
Q Consensus 79 ~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~l 155 (300)
+++|+++ ++..+ +.+.+.+.. +.+++.+ +.+.+.....|...++.++ +++.++.++++|+.+
T Consensus 81 ~~ivv~~~~g~~~---~~l~~~~~~-----------~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~ 145 (263)
T 1yqg_A 81 GALVLSVAAGLSV---GTLSRYLGG-----------TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSV 145 (263)
T ss_dssp TCEEEECCTTCCH---HHHHHHTTS-----------CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCCCH---HHHHHHcCC-----------CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhC
Confidence 4799998 66666 345444431 2467776 6666666667776677776 788999999999999
Q ss_pred CCCeEeeC-C--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-ccccCCCCCCcccCCC
Q 022237 156 GKNTIYCG-G--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVP 231 (300)
Q Consensus 156 g~~~~~~g-~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~ 231 (300)
|..+ +++ + .....++.-..+.+.+..+..+.|+ +++.|++++++.+++..+...++ +......-|.. +
T Consensus 146 g~~~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 217 (263)
T 1yqg_A 146 GLTV-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEK----L 217 (263)
T ss_dssp EEEE-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH----H
T ss_pred CCEE-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----H
Confidence 9766 777 4 1122222212344455566666776 88899999999998876543333 21211111211 2
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q 022237 232 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 281 (300)
Q Consensus 232 ~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~ 281 (300)
..+.+.+++++....|++ ++.|++.++.+++.+.++++.+.|.
T Consensus 218 ~~~~~~~~~~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~~ 260 (263)
T 1yqg_A 218 QKNVTSKGGTTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEMER 260 (263)
T ss_dssp HHHTCCTTSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCChhHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 245677888877666666 7799999999999999999988763
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=157.43 Aligned_cols=238 Identities=13% Similarity=0.115 Sum_probs=176.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.+++..|.+.|++|.+|||++++++.+.+. |+..+.++.++++++|+||+|+| +..+++++.++. ++
T Consensus 14 mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~l~---------~~ 83 (259)
T 2ahr_A 14 MASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLH---------FK 83 (259)
T ss_dssp HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSC---------CC
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHHHhc---------cC
Confidence 79999999999999999999999999888765 88777889999999999999999 458888876431 34
Q ss_pred eEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHHhcC
Q 022237 80 QLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMG 156 (300)
Q Consensus 80 ~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~lg 156 (300)
+++|+++ +..+.. +.+.+.. +.+++. ++.+.+.....|...++.++ +++.++.++++|+.+|
T Consensus 84 ~~vv~~~~~~~~~~---l~~~~~~-----------~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G 148 (259)
T 2ahr_A 84 QPIISMAAGISLQR---LATFVGQ-----------DLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG 148 (259)
T ss_dssp SCEEECCTTCCHHH---HHHHHCT-----------TSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE
T ss_pred CEEEEeCCCCCHHH---HHHhcCC-----------CCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC
Confidence 6888884 666653 4444331 135555 66777777767765666665 7889999999999999
Q ss_pred CCeEeeCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-ccccCCCCCCcccCCCCC
Q 022237 157 KNTIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPAS 233 (300)
Q Consensus 157 ~~~~~~g~~g~a~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~ 233 (300)
.++++++......+++. .|.+.+.++..+.|+ +++.|++.+++.+++..+...++ ........|..+ ..
T Consensus 149 -~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l----~~ 220 (259)
T 2ahr_A 149 -STFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDF----ID 220 (259)
T ss_dssp -EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHH----HH
T ss_pred -CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HH
Confidence 68889886777777764 456666666667766 78899999999999987765554 222222112222 13
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 234 RNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 234 ~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
..+.++|++....||+ ++.|++..+.+++...++++.+
T Consensus 221 ~~~~p~~~~~~~~~~l-------~~~g~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 221 AICSPGGTTIAGLMEL-------ERLGLTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp HHCCTTSHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCChhHHHHHHHH-------HHCChHHHHHHHHHHHHHHHhc
Confidence 3457888888888877 4678888888888888887764
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=168.30 Aligned_cols=256 Identities=13% Similarity=0.119 Sum_probs=175.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC------------CCHHHHhh---cCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK------------ETPFEVAE---ASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------------~~~~e~~~---~adiVii~vp~~~~~~~v~~ 65 (300)
||+++|..|+++||+|++|||++++++.+.+.|.... .+..+..+ ++|+||+|||.+ .+++++.
T Consensus 14 ~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v~~ 92 (316)
T 2ew2_A 14 MGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTKAQ-QLDAMFK 92 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSCHH-HHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEeccc-cHHHHHH
Confidence 7999999999999999999999999998887664321 13444444 899999999976 7888886
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCC--hHhhhcCceEEEe--ccC
Q 022237 66 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMV--GGS 141 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~--~~~~~~g~~~~~~--~g~ 141 (300)
++.+.+ .++++||++++..+ ..+.+.+.+.+..+ ..+..+..++..++ +.....|.+.+.. +++
T Consensus 93 ~l~~~l-----~~~~~iv~~~~g~~-~~~~l~~~~~~~~v------i~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~ 160 (316)
T 2ew2_A 93 AIQPMI-----TEKTYVLCLLNGLG-HEDVLEKYVPKENI------LVGITMWTAGLEGPGRVKLLGDGEIELENIDPSG 160 (316)
T ss_dssp HHGGGC-----CTTCEEEECCSSSC-THHHHTTTSCGGGE------EEEEECCCCEEEETTEEEECSCCCEEEEESSGGG
T ss_pred HHHHhc-----CCCCEEEEecCCCC-cHHHHHHHcCCccE------EEEEeeeeeEEcCCCEEEEecCCcEEEeecCCCc
Confidence 544333 34578998876432 33444444432100 00112222333332 1123345555543 457
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCCH
Q 022237 142 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGISA 200 (300)
Q Consensus 142 ~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gi~~ 200 (300)
++.++.++++|+.+|..+.+.++++.+...|++.|..+ .....++.|+..++++.|+++
T Consensus 161 ~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~~~ 240 (316)
T 2ew2_A 161 KKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYL 240 (316)
T ss_dssp HHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 78899999999999998888888999999999999642 557789999999999999986
Q ss_pred --HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022237 201 --STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 277 (300)
Q Consensus 201 --~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 277 (300)
+.+.+.+...........++ +.+. +|+ ..++..+ ..+++..+.++++++|+++|+.+.++++++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~---~sm~------~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~ 310 (316)
T 2ew2_A 241 DQAEVYTHIVQTYDPNGIGLHY---PSMY------QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGKE 310 (316)
T ss_dssp CHHHHHHHHHHTTCTTTTTTSC---CHHH------HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhccccCCCCC---cHHH------HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 46667766432111001111 1111 234 4445555 789999999999999999999999999998876
Q ss_pred Hc
Q 022237 278 EN 279 (300)
Q Consensus 278 ~~ 279 (300)
..
T Consensus 311 ~~ 312 (316)
T 2ew2_A 311 EL 312 (316)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-21 Score=167.20 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=130.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh--------------HHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV--------------MKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~--------------~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
||++||++|+++||+|++|||++++ .+++.+. +...+.++.++++++|+||+|||++ .+.+++.
T Consensus 30 mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilavp~~-~~~~~~~ 108 (245)
T 3dtt_A 30 VGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATEGA-SSIAALT 108 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECSCGG-GHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEccCcH-HHHHHHH
Confidence 7999999999999999999999997 5555443 5556678999999999999999988 5556654
Q ss_pred CC-CCcccCCCCCCCeEEEEcC-----------CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 66 GP-NGLLQGGNSVRPQLLIDSS-----------TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 66 ~~-~~~l~~~~~~~~~ivid~s-----------t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
++ ...+ ++++|||+| |+.|.+.+.+.+.+.+. +.... ...++.++++|+++++..+..++
T Consensus 109 ~i~~~~l------~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~-l~~~~-vv~~~~~~~a~v~~~~~~a~~g~ 180 (245)
T 3dtt_A 109 AAGAENL------AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRT-FPEAK-VVKTLNTMNASLMVDPGRAAGGD 180 (245)
T ss_dssp HHCHHHH------TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHH-STTSE-EEECSTTSCHHHHHCGGGTGGGC
T ss_pred Hhhhhhc------CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHH-CCCCe-EEEeecccCHHHhcCccccCCCC
Confidence 33 1222 458999999 55555444444444321 00000 00136788999999988877888
Q ss_pred eEEEecc-CHHHHHHHHHHHHhcCCC-eEeeCCccHHHHHHHHHHHHHHHH
Q 022237 134 LTFMVGG-SEDAYQAAKPLFLSMGKN-TIYCGGAGNGAAAKICNNLTMAVS 182 (300)
Q Consensus 134 ~~~~~~g-~~~~~~~~~~ll~~lg~~-~~~~g~~g~a~~~k~~~n~~~~~~ 182 (300)
+.++++| +++++++++++|+.+|.. ++++|++|.+..+|+++|++...+
T Consensus 181 ~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 181 HSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred eeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHH
Confidence 7788766 589999999999999975 689999999999999999998665
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=164.66 Aligned_cols=179 Identities=13% Similarity=0.175 Sum_probs=138.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-------CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-------g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||++||.+|+ +||+|++|||++++++++.+. ++..++++++ +++||+||.|+|++.+++.++.+. +..
T Consensus 23 MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~l~~~---l~~ 97 (293)
T 1zej_A 23 MGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVEVLRE---VER 97 (293)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHHHHHH---HHT
T ss_pred HHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHHHHHH---Hhc
Confidence 8999999999 999999999999999888776 6666777776 899999999999999888776431 222
Q ss_pred CCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc---CHHHHHHHH
Q 022237 74 GNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAK 149 (300)
Q Consensus 74 ~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g---~~~~~~~~~ 149 (300)
. +++++ .|+||.+|....+. +.. ..++.+.||++ |+... .+..++.+ +++.+++++
T Consensus 98 --~-~~~IlasntSti~~~~~a~~---~~~------~~r~~G~Hf~~-Pv~~~-------~lveiv~g~~t~~~~~~~~~ 157 (293)
T 1zej_A 98 --L-TNAPLCSNTSVISVDDIAER---LDS------PSRFLGVHWMN-PPHVM-------PLVEIVISRFTDSKTVAFVE 157 (293)
T ss_dssp --T-CCSCEEECCSSSCHHHHHTT---SSC------GGGEEEEEECS-STTTC-------CEEEEEECTTCCHHHHHHHH
T ss_pred --C-CCCEEEEECCCcCHHHHHHH---hhc------ccceEeEEecC-ccccC-------CEEEEECCCCCCHHHHHHHH
Confidence 2 44676 48889998744332 221 11223478888 54432 23444443 899999999
Q ss_pred HHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 022237 150 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 215 (300)
Q Consensus 150 ~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~ 215 (300)
++++.+|++++++++. +++++.+. ..++|++.++++ |++++++.++++.+.+.+|
T Consensus 158 ~l~~~lGk~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~ 212 (293)
T 1zej_A 158 GFLRELGKEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLY 212 (293)
T ss_dssp HHHHHTTCEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHcCCeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCC
Confidence 9999999999999863 77888776 679999999999 8899999999987766554
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-21 Score=175.79 Aligned_cols=259 Identities=14% Similarity=0.089 Sum_probs=169.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||++||.+|+++||+|++|||++++++.+.+.+ +..+.++.++++++|+||+|||+. .+++++.+
T Consensus 26 mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~~-~~~~v~~~ 104 (366)
T 1evy_A 26 FGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ-FLRGFFEK 104 (366)
T ss_dssp HHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCChH-HHHHHHHH
Confidence 799999999999999999999999998887643 234467888899999999999974 88888865
Q ss_pred ----CCCcccCCCCCC-CeEEEEcC-CCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc
Q 022237 67 ----PNGLLQGGNSVR-PQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 140 (300)
Q Consensus 67 ----~~~~l~~~~~~~-~~ivid~s-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g 140 (300)
+...+ .+ +++||+++ ++.+.+.+.+.+.+.+. .+. ....++.+|.+............++.++
T Consensus 105 ~~~gl~~~l-----~~~~~ivv~~~~gi~~~~~~~~~~~l~~~-----~~~-~~~~v~~gp~~~~~~~~g~~~~~~~~~~ 173 (366)
T 1evy_A 105 SGGNLIAYA-----KEKQVPVLVCTKGIERSTLKFPAEIIGEF-----LPS-PLLSVLAGPSFAIEVATGVFTCVSIASA 173 (366)
T ss_dssp HCHHHHHHH-----HHHTCCEEECCCSCCTTTCCCHHHHHTTT-----SCG-GGEEEEESSCCHHHHHTTCCEEEEEECS
T ss_pred hHHHHHHhc-----CccCCEEEEECCcCCCccccCHHHHHHHH-----CCC-CcEEEEeCCChHHHHHhCCceEEEEecC
Confidence 33333 23 47889888 56776555555655431 110 0123455554433222222233455566
Q ss_pred CHHHHHHHHHHHHhc--CCCeEeeCCcc---HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022237 141 SEDAYQAAKPLFLSM--GKNTIYCGGAG---NGAA--------------AKICNNLTMAVSMLGVSEALTLGQSLGISAS 201 (300)
Q Consensus 141 ~~~~~~~~~~ll~~l--g~~~~~~g~~g---~a~~--------------~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 201 (300)
+++.++.++++|+.. +.++++.+++. -+.. +|+.+|.+....+.++.|++.++++.|++++
T Consensus 174 ~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~~ 253 (366)
T 1evy_A 174 DINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGS 253 (366)
T ss_dssp SHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 888999999999998 77766666532 2222 3455788888999999999999999999987
Q ss_pred HHHHHHHhc----CCCccccccCCCCCCcccCCCCCCCCC----CCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 022237 202 TLTKILNSS----SARCWSSDSYNPVPGVMEGVPASRNYG----GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 273 (300)
Q Consensus 202 ~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~ 273 (300)
++.++...+ ...++.++++.....+..+ +.+. ..+......||+..+.++++++|+++|+.+.+++++
T Consensus 254 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~ 329 (366)
T 1evy_A 254 AVFGLAGLGDLQLTCSSELSRNFTVGKKLGKG----LPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIV 329 (366)
T ss_dssp TTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTT----CCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred cccccccchhheeeecCCCCchHHHHHHHhCC----CCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 664321100 0011111111000111100 0010 012334578999999999999999999999999887
Q ss_pred HH
Q 022237 274 AK 275 (300)
Q Consensus 274 ~~ 275 (300)
+.
T Consensus 330 ~~ 331 (366)
T 1evy_A 330 YK 331 (366)
T ss_dssp HS
T ss_pred HC
Confidence 54
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=161.28 Aligned_cols=259 Identities=14% Similarity=0.074 Sum_probs=176.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcC--ChhhHHHHHhCCC-----------CCCC--CHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMGV-----------PTKE--TPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr--~~~~~~~~~~~g~-----------~~~~--~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
||+++|..|+++||+|++||| ++++++.+.+.|. .... ++.++++++|+||+|||.+ .+++++.
T Consensus 11 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~~~~v~~ 89 (335)
T 1txg_A 11 MGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTD-GVLPVMS 89 (335)
T ss_dssp HHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCGG-GHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCChH-HHHHHHH
Confidence 799999999999999999999 9999999988764 2334 6778889999999999987 8888886
Q ss_pred CCCCcccCCCCCCCeEEEEcC-CC---CHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc--eEEEec
Q 022237 66 GPNGLLQGGNSVRPQLLIDSS-TI---DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT--LTFMVG 139 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~s-t~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~--~~~~~~ 139 (300)
++.+ + .++++||+++ ++ .|.+.+.+.+.+.+. .+......+...|.. ......+. ..++.+
T Consensus 90 ~i~~-l-----~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~-----~g~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~ 156 (335)
T 1txg_A 90 RILP-Y-----LKDQYIVLISKGLIDFDNSVLTVPEAVWRLK-----HDLRERTVAITGPAI--AREVAKRMPTTVVFSS 156 (335)
T ss_dssp HHTT-T-----CCSCEEEECCCSEEEETTEEEEHHHHHHTTS-----TTCGGGEEEEESSCC--HHHHHTTCCEEEEEEC
T ss_pred HHhc-C-----CCCCEEEEEcCcCccCCCCcCccHHHHHHHh-----cCCCCcEEEEECCCc--HHHHHccCCcEEEEEe
Confidence 5444 4 2347889887 55 555556666666531 010001223333432 22222233 334445
Q ss_pred cCHHHHHHHHHHHHhcCCCeEeeCCccH-----------------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcC
Q 022237 140 GSEDAYQAAKPLFLSMGKNTIYCGGAGN-----------------GAAAKIC-----NNLTMAVSMLGVSEALTLGQSLG 197 (300)
Q Consensus 140 g~~~~~~~~~~ll~~lg~~~~~~g~~g~-----------------a~~~k~~-----~n~~~~~~~~~~~Ea~~l~~~~G 197 (300)
.+++.++.++++|+..|.++.+.+++.. ...+|+. .|.+......++.|+..++++.|
T Consensus 157 ~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G 236 (335)
T 1txg_A 157 PSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILG 236 (335)
T ss_dssp SCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 5788899999999998888777776532 3345777 88888889999999999999999
Q ss_pred CCHHHHH------HHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc--------------chhhHHHHHHHHHHHHH
Q 022237 198 ISASTLT------KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF--------------ASKLMAKDLNLALASAK 257 (300)
Q Consensus 198 i~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~kd~~~~~~~a~ 257 (300)
+++++++ +.+..... +. ++. . .+.+.++| ...+..||+..+.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-~~---~~~-~---------~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~ 302 (335)
T 1txg_A 237 GDRETAFGLSGFGDLIATFRG-GR---NGM-L---------GELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSS 302 (335)
T ss_dssp SCGGGGGSTTTHHHHHHTTTC-HH---HHH-H---------HHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCcchhhcccchhheeecccc-Cc---cHH-H---------HHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHH
Confidence 9987664 44443221 10 000 0 00111122 22345699999999999
Q ss_pred HcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHh
Q 022237 258 EVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 294 (300)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 294 (300)
++|+++|+.+.++++++. ..+...+++.+.
T Consensus 303 ~~gv~~P~~~~~~~~~~~-------~~~~~~~~~~l~ 332 (335)
T 1txg_A 303 KINADTKLLDSIYRVLYE-------GLKVEEVLFELA 332 (335)
T ss_dssp HTTCCCHHHHHHHHHHHS-------CCCHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 999999999999988763 235555555443
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=160.43 Aligned_cols=260 Identities=13% Similarity=0.116 Sum_probs=168.9
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCChh--hHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNCN--VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~~--~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||++|+.+|.++| |+|++|||+++ +++.+.+.|+..+.++.++++++|+||+|||. ..+++++.++...+
T Consensus 33 mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~-~~~~~vl~~l~~~l--- 108 (322)
T 2izz_A 33 LAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKP-HIIPFILDEIGADI--- 108 (322)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCG-GGHHHHHHHHGGGC---
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCH-HHHHHHHHHHHhhc---
Confidence 7999999999999 89999999986 88888877888888899999999999999995 58888886543332
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccC---HHHHHHHHHH
Q 022237 75 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS---EDAYQAAKPL 151 (300)
Q Consensus 75 ~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~---~~~~~~~~~l 151 (300)
.++++||++++..+. ..+.+.+.+. . .+.+++. .+...+.....|. +++++++ ++.++.++++
T Consensus 109 --~~~~ivvs~s~gi~~--~~l~~~l~~~-----~---~~~~vv~-~~p~~p~~~~~g~-~v~~~g~~~~~~~~~~v~~l 174 (322)
T 2izz_A 109 --EDRHIVVSCAAGVTI--SSIEKKLSAF-----R---PAPRVIR-CMTNTPVVVREGA-TVYATGTHAQVEDGRLMEQL 174 (322)
T ss_dssp --CTTCEEEECCTTCCH--HHHHHHHHTT-----S---SCCEEEE-EECCGGGGGTCEE-EEEEECTTCCHHHHHHHHHH
T ss_pred --CCCCEEEEeCCCCCH--HHHHHHHhhc-----C---CCCeEEE-EeCCcHHHHcCCe-EEEEeCCCCCHHHHHHHHHH
Confidence 345799998754432 2455555421 0 0123333 2333344444454 6666665 7889999999
Q ss_pred HHhcCCCeEeeCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccc-ccCCCCCCccc
Q 022237 152 FLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS-DSYNPVPGVME 228 (300)
Q Consensus 152 l~~lg~~~~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~ 228 (300)
|+.+|..++ +.+ .....++..+.|.+.+.++..+.|+ +++.|++++++.+++..+...++.. ......|..+
T Consensus 175 l~~~G~~~~-~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~l- 249 (322)
T 2izz_A 175 LSSVGFCTE-VEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQL- 249 (322)
T ss_dssp HHTTEEEEE-CCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHH-
T ss_pred HHhCCCEEE-eCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-
Confidence 999997654 444 2333333334566666666666666 6889999999999998775443321 1111112111
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 022237 229 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
....+.++++ +...++.+++.|++.++.+++.+.++++.+.|.+++..+.--..+
T Consensus 250 ---~~~v~sp~g~-------t~~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~~~~~~~~~~ 304 (322)
T 2izz_A 250 ---KDNVSSPGGA-------TIHALHVLESGGFRSLLINAVEASCIRTRELQSMADQEQVSPAAI 304 (322)
T ss_dssp ---HHHHCCTTSH-------HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ---HHhCCCCCcH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccHHHH
Confidence 1122245444 334556778899999999999999999999888766655444333
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=159.21 Aligned_cols=241 Identities=10% Similarity=0.056 Sum_probs=163.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||+++|..|+++||+|++|||++++.+.+...+.. ...+ .+.++++|+||+|||.+ .+++++.++.+.+
T Consensus 11 ~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~v~~~l~~~l- 87 (291)
T 1ks9_A 11 LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSDAVKSLASTL- 87 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHHHHHHHHhhC-
Confidence 79999999999999999999999877665443311 1233 46778999999999987 6788886543333
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCce----EEEeccCCChHhhhcCceEEEe-ccCHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV----MLDAPVSGGVLAAEAGTLTFMV-GGSEDAYQA 147 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~pv~g~~~~~~~g~~~~~~-~g~~~~~~~ 147 (300)
.++++||++++.. ...+.+.+.+.+ ...+.. +...| . +.....|.+.+.. +++++.++.
T Consensus 88 ----~~~~~vv~~~~g~-~~~~~l~~~~~~--------~~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~~~~~~~~~~~ 151 (291)
T 1ks9_A 88 ----PVTTPILLIHNGM-GTIEELQNIQQP--------LLMGTTTHAARRDGN-V--IIHVANGITHIGPARQQDGDYSY 151 (291)
T ss_dssp ----CTTSCEEEECSSS-CTTGGGTTCCSC--------EEEEEECCEEEEETT-E--EEEEECCCEEEEESSGGGTTCTH
T ss_pred ----CCCCEEEEecCCC-CcHHHHHHhcCC--------eEEEEEeEccEEcCC-E--EEEecccceEEccCCCCcchHHH
Confidence 3457888876532 222233332211 000112 23334 1 2334456655544 456677889
Q ss_pred HHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHH----
Q 022237 148 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------------AVSMLGVSEALTLGQSLGISA--STL---- 203 (300)
Q Consensus 148 ~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~------------------~~~~~~~~Ea~~l~~~~Gi~~--~~~---- 203 (300)
++++|+.+|.++.+.++++.+...|++.|... .....++.|++.++++.|++. +.+
T Consensus 152 ~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~ 231 (291)
T 1ks9_A 152 LADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYV 231 (291)
T ss_dssp HHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999888888999999999999988 788899999999999999986 454
Q ss_pred HHHHHhcC-CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022237 204 TKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 277 (300)
Q Consensus 204 ~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 277 (300)
.+++.... ..+.+ . +|+..++..+. .++...+.++++++|+++|+.+.++++++...
T Consensus 232 ~~~~~~~~~~~ssm----------~------~d~~~g~~~e~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e 289 (291)
T 1ks9_A 232 MQVIDATAENISSM----------L------QDIRALRHTEI-DYINGFLLRRARAHGIAVPENTRLFEMVKRKE 289 (291)
T ss_dssp HHHHHHTTTCCCHH----------H------HHHHTTCCCSG-GGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCChH----------H------HHHHcCCccHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 33333221 11111 1 12222222222 25688899999999999999999999988654
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-19 Score=159.39 Aligned_cols=253 Identities=12% Similarity=0.051 Sum_probs=169.1
Q ss_pred ChHHHHHHHHhCC-------CeEEEEcCChh-----hHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDM--------------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G-------~~V~~~dr~~~-----~~~~~~~~--------------g~~~~~~~~e~~~~adiVii~v 54 (300)
||++||..|+++| |+|++|||+++ +++.+.+. ++..+.++.++++++|+||+||
T Consensus 32 mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~~~aDvVilav 111 (375)
T 1yj8_A 32 WASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVINDADLLIFIV 111 (375)
T ss_dssp HHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHHcCCCEEEEcC
Confidence 7999999999999 99999999998 88877653 2334567888899999999999
Q ss_pred CChhhhhhhhcCCCC----cccCCCCCCCeEEEEcCC-CCH--HHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChH
Q 022237 55 PSSSHVLDVYNGPNG----LLQGGNSVRPQLLIDSST-IDP--QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 127 (300)
Q Consensus 55 p~~~~~~~v~~~~~~----~l~~~~~~~~~ivid~st-~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~ 127 (300)
|++ .+++++.++.+ .+ .++++||++++ +.+ .+.+.+.+.+.+. .+ ....++.+|.+....
T Consensus 112 ~~~-~~~~vl~~i~~~~~~~l-----~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~-----~~--~~~~v~~gp~~a~~v 178 (375)
T 1yj8_A 112 PCQ-YLESVLASIKESESIKI-----ASHAKAISLTKGFIVKKNQMKLCSNYISDF-----LN--IPCSALSGANIAMDV 178 (375)
T ss_dssp CHH-HHHHHHHHHTC---CCC-----CTTCEEEECCCSCEEETTEEECHHHHHHHH-----SS--SCEEEEECSCCHHHH
T ss_pred CHH-HHHHHHHHHhhhhhccC-----CCCCEEEEeCCccccCCccccCHHHHHHHH-----cC--CCEEEEeCCchHHHH
Confidence 975 88999875443 33 34578998884 454 2233444444331 11 123445555543322
Q ss_pred hhhcCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCcc---HHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 022237 128 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAG---NGAA--------------AKICNNLTMAVSMLGVSEAL 190 (300)
Q Consensus 128 ~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g---~a~~--------------~k~~~n~~~~~~~~~~~Ea~ 190 (300)
........++.+++++.++.++++|+..+.++.+.+++. -+.+ +|+..|........++.|+.
T Consensus 179 ~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~ 258 (375)
T 1yj8_A 179 AMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMI 258 (375)
T ss_dssp HTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Confidence 222333445556788899999999999888877777642 2222 34457888889999999999
Q ss_pred HHHHHc--CCCHHHHHHH------HHhcCCCccccccCCCCCCcccCCCCCC---CCCC------CcchhhHHHHHHHHH
Q 022237 191 TLGQSL--GISASTLTKI------LNSSSARCWSSDSYNPVPGVMEGVPASR---NYGG------GFASKLMAKDLNLAL 253 (300)
Q Consensus 191 ~l~~~~--Gi~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~kd~~~~~ 253 (300)
.++++. |++++++.++ +..... + +++.....+.. .+ .+.. .+...+..|++..+.
T Consensus 259 ~la~a~G~G~~~~~~~~~~g~~dl~~t~~~-~---~~~~~~~~~~~----~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~ 330 (375)
T 1yj8_A 259 LFGKVFFQKFNENILLESCGFADIITSFLA-G---RNAKCSAEFIK----STPKKTWEELENEILKGQKLQGTVTLKYVY 330 (375)
T ss_dssp HHHHHHSSCCCGGGGGSTTTHHHHHHHHSS-S---SHHHHHHHHHH----HTTSSCHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHhccCCCcchhhccccccceeEeeeC-C---ccHHHHHHHHh----cCCCCCHHHHHHhhcCCcEeeHHHHHHHHH
Confidence 999999 6998776432 222211 0 11000000000 01 1111 034557899999999
Q ss_pred HHHHHcCC--CchHHHHHHHHHH
Q 022237 254 ASAKEVGV--DCPLTSQAQDIYA 274 (300)
Q Consensus 254 ~~a~~~g~--~~~~~~~~~~~~~ 274 (300)
++++++|+ ++|+.+.++++++
T Consensus 331 ~~a~~~gv~~~~P~~~~v~~~~~ 353 (375)
T 1yj8_A 331 HMIKEKNMTNEFPLFTVLHKISF 353 (375)
T ss_dssp HHHHHTTCGGGCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHh
Confidence 99999999 9999999998874
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=151.14 Aligned_cols=190 Identities=13% Similarity=0.138 Sum_probs=146.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++++.|.++||+|++|||++++++.+.+.|+... ++.++++++|+||+|||.+ .+++++.++...+ .+++
T Consensus 23 mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~-~~~~v~~~l~~~l-----~~~~ 95 (286)
T 3c24_A 23 MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDN-IIEKVAEDIVPRV-----RPGT 95 (286)
T ss_dssp HHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHH-HHHHHHHHHGGGS-----CTTC
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCch-HHHHHHHHHHHhC-----CCCC
Confidence 7999999999999999999999999998888776553 6778889999999999987 5788886543322 3458
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCCh------HhhhcCc-------eEE--EeccCHHH
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGV------LAAEAGT-------LTF--MVGGSEDA 144 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~------~~~~~g~-------~~~--~~~g~~~~ 144 (300)
+|+|+|+..+.. .+.+ . ..+.+++ .+|+++++ +....|. ..+ ..+++++.
T Consensus 96 ivv~~s~~~~~~--~l~~-~-----------~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~ 161 (286)
T 3c24_A 96 IVLILDAAAPYA--GVMP-E-----------RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEH 161 (286)
T ss_dssp EEEESCSHHHHH--TCSC-C-----------CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHH
T ss_pred EEEECCCCchhH--HHHh-h-----------hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHH
Confidence 999977755432 1211 1 1136788 89999877 5455663 222 34678899
Q ss_pred HHHHHHHHHhcCC---CeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHhcC
Q 022237 145 YQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILNSSS 211 (300)
Q Consensus 145 ~~~~~~ll~~lg~---~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~~~~ 211 (300)
++.++++|+.+|. +++++++.+.+...|.+.|.....++..+.|++..+.+ .|++.+++.+++..+.
T Consensus 162 ~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~ 232 (286)
T 3c24_A 162 YAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHL 232 (286)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999998 78999876666666999988888888999998866555 4999999999887654
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=153.56 Aligned_cols=248 Identities=10% Similarity=0.053 Sum_probs=161.7
Q ss_pred ChHHHHHHHHhC-----C-CeEEEEcCChhhHHHHHh-CCCCCCC-------------CHHHHhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKA-----G-YKMAVHDVNCNVMKMFSD-MGVPTKE-------------TPFEVAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~-----G-~~V~~~dr~~~~~~~~~~-~g~~~~~-------------~~~e~~~~adiVii~vp~~~~~ 60 (300)
||+++|..|+++ | |+|++|+| +++++.+.+ .|..... +..+.+..+|+||+|||.+ .+
T Consensus 19 mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk~~-~~ 96 (317)
T 2qyt_A 19 VGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYILFCTKDY-DM 96 (317)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEEEECCSSS-CH
T ss_pred HHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEEEEecCcc-cH
Confidence 799999999999 9 99999999 888999988 7754332 3445678999999999998 67
Q ss_pred hhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCC--hHhhhcCceEEEe
Q 022237 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMV 138 (300)
Q Consensus 61 ~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~--~~~~~~g~~~~~~ 138 (300)
++++.++...+. ++++||++++. ....+.+.+.+.+. ....++.++++++.++ ......|...++.
T Consensus 97 ~~v~~~i~~~l~-----~~~~iv~~~nG-~~~~~~l~~~l~~~------~v~~g~~~~~a~~~~pg~~~~~~~g~~~~ig 164 (317)
T 2qyt_A 97 ERGVAEIRPMIG-----QNTKILPLLNG-ADIAERMRTYLPDT------VVWKGCVYISARKSAPGLITLEADRELFYFG 164 (317)
T ss_dssp HHHHHHHGGGEE-----EEEEEEECSCS-SSHHHHHTTTSCTT------TBCEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred HHHHHHHHhhcC-----CCCEEEEccCC-CCcHHHHHHHCCCC------cEEEEEEEEEEEEcCCCEEEEcCCCceEEEc
Confidence 888765444332 34788887654 33334444444321 0111245666666542 1223344433232
Q ss_pred c----cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Q 022237 139 G----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-------------------VSMLGVSEALTLGQS 195 (300)
Q Consensus 139 ~----g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~-------------------~~~~~~~Ea~~l~~~ 195 (300)
+ ++.+.+ .++++|+..|..+.+.++++.+...|++.|.... ....++.|++.++++
T Consensus 165 ~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~~a 243 (317)
T 2qyt_A 165 SGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELFRA 243 (317)
T ss_dssp CCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 246666 8999999999988888889999999999998753 455899999999999
Q ss_pred cCCCHH--HHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 022237 196 LGISAS--TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 273 (300)
Q Consensus 196 ~Gi~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~ 273 (300)
.|++++ .+.+.+.... +....+. +.+. .|+..++..+. ...+..+.++++++|+++|+.+.+++++
T Consensus 244 ~G~~~~~~~~~~~~~~~~--~~~~~~~---~sm~------~d~~~g~~~E~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~ 311 (317)
T 2qyt_A 244 KYGQVPDDVVQQLLDKQR--KMPPEST---SSMH------SDFLQGGSTEV-ETLTGYVVREAEALRVDLPMYKRMYREL 311 (317)
T ss_dssp HTSCCCSSHHHHHHHHHH--HC------------------------------CTTTHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred cCCCCChHHHHHHHHHHh--ccCCCCC---ChHH------HHHHcCCccCH-HHHhhHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999864 5666665421 0001111 1111 23333333211 1237899999999999999999999877
Q ss_pred HH
Q 022237 274 AK 275 (300)
Q Consensus 274 ~~ 275 (300)
+.
T Consensus 312 ~~ 313 (317)
T 2qyt_A 312 VS 313 (317)
T ss_dssp CC
T ss_pred HH
Confidence 54
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=155.09 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=165.0
Q ss_pred ChHHHHHHHHhCC-------CeEEEEcCChh-----hHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G-------~~V~~~dr~~~-----~~~~~~~~g--------------~~~~~~~~e~~~~adiVii~v 54 (300)
||+++|..|+++| |+|++|||+++ +.+.+.+.+ +..+.++.++++++|+||+||
T Consensus 19 mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vilav 98 (354)
T 1x0v_A 19 WGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVV 98 (354)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHHcCCCEEEEeC
Confidence 7999999999999 99999999998 887776421 233467888899999999999
Q ss_pred CChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC-CC--HHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc
Q 022237 55 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-ID--PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 131 (300)
Q Consensus 55 p~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st-~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~ 131 (300)
|.. .+++++.++...+ .++++||++++ +. |.+.+.+.+.+.+. .+ .....+.+|.+.. ....
T Consensus 99 ~~~-~~~~v~~~i~~~l-----~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~-----~~--~~~~v~~gp~~a~--~v~~ 163 (354)
T 1x0v_A 99 PHQ-FIGKICDQLKGHL-----KANATGISLIKGVDEGPNGLKLISEVIGER-----LG--IPMSVLMGANIAS--EVAD 163 (354)
T ss_dssp CGG-GHHHHHHHHTTCS-----CTTCEEEECCCCBCSSSSSCCBHHHHHHHH-----HT--CCEEEEECSCCHH--HHHT
T ss_pred CHH-HHHHHHHHHHhhC-----CCCCEEEEECCccCCCCCccccHHHHHHHH-----cC--CCEEEEECCCcHH--HHHh
Confidence 975 8888886544333 34578998886 43 33333444444321 11 1133445554332 2223
Q ss_pred C--ceEEEeccCHHHHHHHHHHHHhcCCCeEeeCCccHHHH---H--------------HHHHHHHHHHHHHHHHHHHHH
Q 022237 132 G--TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA---A--------------KICNNLTMAVSMLGVSEALTL 192 (300)
Q Consensus 132 g--~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~---~--------------k~~~n~~~~~~~~~~~Ea~~l 192 (300)
+ ...++.+.+++.+++++++|+..+.++.+.+++..... + |+.+|........++.|+..+
T Consensus 164 g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~l 243 (354)
T 1x0v_A 164 EKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF 243 (354)
T ss_dssp TCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 3 33444566788899999999999888777776433222 2 333788888899999999999
Q ss_pred HHHcCC---CHHHHHH------HHHhcCCCccccccCCCCCCcccCCCCCCCCCC------CcchhhHHHHHHHHHHHHH
Q 022237 193 GQSLGI---SASTLTK------ILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG------GFASKLMAKDLNLALASAK 257 (300)
Q Consensus 193 ~~~~Gi---~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~kd~~~~~~~a~ 257 (300)
+++.|+ +++++.+ .+..... + +++...+.+... ...+.. .+...+..||+..+.++++
T Consensus 244 a~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~---~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~ 316 (354)
T 1x0v_A 244 AKLFCSGPVSSATFLESCGVADLITTCYG-G---RNRKVAEAFART---GKSIEQLEKELLNGQKLQGPETARELYSILQ 316 (354)
T ss_dssp HHHHSSSCCCGGGGGSTTTHHHHHHHHHH-C---HHHHHHHHHHHH---CCCHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcccccccchHHHHHHhhcc-c---ccHHHHHHHHhc---CCCHHHHHHhhcCCcEeehHHHHHHHHHHHH
Confidence 999999 8876532 2221111 0 000000011000 000100 1345567899999999999
Q ss_pred HcCC--CchHHHHHHHHHH
Q 022237 258 EVGV--DCPLTSQAQDIYA 274 (300)
Q Consensus 258 ~~g~--~~~~~~~~~~~~~ 274 (300)
++|+ ++|+.+.++++++
T Consensus 317 ~~gv~~~~P~~~~v~~~~~ 335 (354)
T 1x0v_A 317 HKGLVDKFPLFMAVYKVCY 335 (354)
T ss_dssp HHTCGGGSHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHh
Confidence 9999 9999999998875
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=148.28 Aligned_cols=190 Identities=12% Similarity=0.135 Sum_probs=139.9
Q ss_pred ChHHHHHHHHhCCCe-EEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||..++..|.+.|++ |.+|||++++++.+.+. |+....++.++++++|+||+|+|++ .+++++.++... .++
T Consensus 21 mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~~~l~~~-----~~~ 94 (266)
T 3d1l_A 21 LATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELLQGIVEG-----KRE 94 (266)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHHHHHHTT-----CCT
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHHHHHHhh-----cCC
Confidence 799999999999999 89999999999888775 7777778888889999999999988 668887543222 235
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEe-ccCHHHHHHHHHHHHhcCC
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV-GGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~-~g~~~~~~~~~~ll~~lg~ 157 (300)
+++|+++|+..+.+. +.+.+.+ . +..+..+|+.+++... .+...+++ +++++.++.++++|+.+|.
T Consensus 95 ~~ivv~~s~~~~~~~--l~~~~~~------~----~~~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~g~ 161 (266)
T 3d1l_A 95 EALMVHTAGSIPMNV--WEGHVPH------Y----GVFYPMQTFSKQREVD-FKEIPFFIEASSTEDAAFLKAIASTLSN 161 (266)
T ss_dssp TCEEEECCTTSCGGG--STTTCSS------E----EEEEECCCC---CCCC-CTTCCEEEEESSHHHHHHHHHHHHTTCS
T ss_pred CcEEEECCCCCchHH--HHHHHHh------c----cCcCCceecCCCchhh-cCCCeEEEecCCHHHHHHHHHHHHhcCC
Confidence 689999998877532 3322221 1 1345566766643322 23334445 7789999999999999999
Q ss_pred CeEeeCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 022237 158 NTIYCGGAG---NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSAR 213 (300)
Q Consensus 158 ~~~~~g~~g---~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~ 213 (300)
+++++++.+ .....|+++|... ++..+.|+ ++++.|++++++.+++..+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~ 216 (266)
T 3d1l_A 162 RVYDADSEQRKSLHLAAVFTCNFTN--HMYALAAE--LLKKYNLPFDVMLPLIDETARK 216 (266)
T ss_dssp CEEECCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHTTCCGGGGHHHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHcCCCHHHHHHHHHHHHHH
Confidence 999998754 5688899999853 34556665 6789999999999988876533
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=135.39 Aligned_cols=191 Identities=13% Similarity=0.155 Sum_probs=130.2
Q ss_pred ChHHHHHHHHhCCC----eEEEEcCChhhHHHHHh-CCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++|+++|.++|| +|++|||++++++.+.+ .|+..+.++.++++++|+||+|||.. .+++++.++...+
T Consensus 13 mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~-~~~~v~~~l~~~l---- 87 (247)
T 3gt0_A 13 MGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPD-LYASIINEIKEII---- 87 (247)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTT-THHHHC---CCSS----
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHH-HHHHHHHHHHhhc----
Confidence 79999999999999 99999999999999875 48888889999999999999999765 8889987654433
Q ss_pred CCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEe--ccCHHHHHHHHHHH
Q 022237 76 SVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV--GGSEDAYQAAKPLF 152 (300)
Q Consensus 76 ~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~--~g~~~~~~~~~~ll 152 (300)
+++++|| ++++++.. .+.+.+.. +..++.. +...|.....|...++. +++++.+++++++|
T Consensus 88 -~~~~~vvs~~~gi~~~---~l~~~~~~-----------~~~~v~~-~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 151 (247)
T 3gt0_A 88 -KNDAIIVTIAAGKSIE---STENAFNK-----------KVKVVRV-MPNTPALVGEGMSALCPNEMVTEKDLEDVLNIF 151 (247)
T ss_dssp -CTTCEEEECSCCSCHH---HHHHHHCS-----------CCEEEEE-ECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCCCHH---HHHHHhCC-----------CCcEEEE-eCChHHHHcCceEEEEeCCCCCHHHHHHHHHHH
Confidence 3446777 56666654 34444431 1223321 12333333345544444 25889999999999
Q ss_pred HhcCCCeEeeCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccc
Q 022237 153 LSMGKNTIYCGGAGNG--AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS 216 (300)
Q Consensus 153 ~~lg~~~~~~g~~g~a--~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~ 216 (300)
+.+|. ++++++.... ..+.-..+.+.+.++.++.++ +++.|++++++.+++..+..+++.
T Consensus 152 ~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a---~~~~Gl~~~~a~~~~~~~~~gs~~ 213 (247)
T 3gt0_A 152 NSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADA---AVLDGMPRNQAYKFAAQAVLGSAK 213 (247)
T ss_dssp GGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99998 6677652222 333333455554444444443 889999999999999988655444
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=141.00 Aligned_cols=236 Identities=13% Similarity=0.089 Sum_probs=157.9
Q ss_pred ChHHHHHHHHhCC----CeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAG----YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G----~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++|+.+|.++| ++|++|||++++ .|+....++.++++++|+||+|||.. .+++++.++.+.+
T Consensus 15 mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~~-~~~~v~~~l~~~l----- 82 (262)
T 2rcy_A 15 MGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKPD-IAGSVLNNIKPYL----- 82 (262)
T ss_dssp HHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCTT-THHHHHHHSGGGC-----
T ss_pred HHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCHH-HHHHHHHHHHHhc-----
Confidence 7999999999999 799999999887 47777778999999999999999965 8888887654333
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc---CHHHHHHHHHHHH
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFL 153 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~ 153 (300)
+++.+|.+++++.+.. +.+.+... .. .++++ .+.|.....| .++++++ +++.++.++++|+
T Consensus 83 ~~~~vv~~~~gi~~~~---l~~~~~~~----~~----~v~~~----p~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~ 146 (262)
T 2rcy_A 83 SSKLLISICGGLNIGK---LEEMVGSE----NK----IVWVM----PNTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFN 146 (262)
T ss_dssp TTCEEEECCSSCCHHH---HHHHHCTT----SE----EEEEE----CCGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHH---HHHHhCCC----Cc----EEEEC----CChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHH
Confidence 2345777888888864 33444320 00 02222 2223333356 5666655 6888999999999
Q ss_pred hcCCCeEeeCCccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccc-cCCCCCCcccCC
Q 022237 154 SMGKNTIYCGGAGNGAAAKI--CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNPVPGVMEGV 230 (300)
Q Consensus 154 ~lg~~~~~~g~~g~a~~~k~--~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~ 230 (300)
.+|. ++++++.......++ +.|.+.+..+..+.|+ +++.|++++.+.+++..+...++... .....|.++
T Consensus 147 ~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--- 219 (262)
T 2rcy_A 147 SCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQL--- 219 (262)
T ss_dssp TSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHH---
T ss_pred hCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---
Confidence 9997 888886444444444 4577776666666665 68999999999888876543222111 001112222
Q ss_pred CCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 231 PASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 231 ~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
.+.+ .++++. ...++..++.|++..+.+++.+.++++.+.+
T Consensus 220 --~d~~~~~~~t~-------~~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 220 --KDNIVSPGGIT-------AVGLYSLEKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp --HHHHCCTTSHH-------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHhcCCCChHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 1222 344443 3344444667899999999999999988764
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=143.95 Aligned_cols=243 Identities=15% Similarity=0.151 Sum_probs=167.0
Q ss_pred ChHHHHHHHHhCCC---eEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc-ccCCC
Q 022237 1 MGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL-LQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~---~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~-l~~~~ 75 (300)
||++|+++|.++|+ +|++|||++++++.+.+. |+..+.++.++++++|+||+|||.. .+++++.++.+. +.
T Consensus 14 mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~-~~~~vl~~l~~~~l~--- 89 (280)
T 3tri_A 14 MARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPH-QIKMVCEELKDILSE--- 89 (280)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGG-GHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHH-HHHHHHHHHHhhccC---
Confidence 79999999999999 899999999999999886 8888889999999999999999764 888888765544 42
Q ss_pred CCCCeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc---CHHHHHHHHHH
Q 022237 76 SVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPL 151 (300)
Q Consensus 76 ~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g---~~~~~~~~~~l 151 (300)
++++||.. ++++. ..+.+.+.. +.+++.. ++..|.....|. +.++.+ +++.++.++++
T Consensus 90 --~~~iiiS~~agi~~---~~l~~~l~~-----------~~~vvr~-mPn~p~~v~~g~-~~l~~~~~~~~~~~~~v~~l 151 (280)
T 3tri_A 90 --TKILVISLAVGVTT---PLIEKWLGK-----------ASRIVRA-MPNTPSSVRAGA-TGLFANETVDKDQKNLAESI 151 (280)
T ss_dssp --TTCEEEECCTTCCH---HHHHHHHTC-----------CSSEEEE-ECCGGGGGTCEE-EEEECCTTSCHHHHHHHHHH
T ss_pred --CCeEEEEecCCCCH---HHHHHHcCC-----------CCeEEEE-ecCChHHhcCcc-EEEEeCCCCCHHHHHHHHHH
Confidence 33577743 44443 455555542 1223321 223344443443 444433 57899999999
Q ss_pred HHhcCCCeEeeC-C--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccc-cCCCCCCcc
Q 022237 152 FLSMGKNTIYCG-G--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD-SYNPVPGVM 227 (300)
Q Consensus 152 l~~lg~~~~~~g-~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~ 227 (300)
|+.+|. ++++. + .....++..+.+.+++.++.++.|+ +.+.|++++++.+++..+..++..+- ....-|..+
T Consensus 152 ~~~iG~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l 227 (280)
T 3tri_A 152 MRAVGL-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVVQL 227 (280)
T ss_dssp HGGGEE-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHCCC-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999997 55553 3 4555666666788888888888888 77999999999999887642222111 000111111
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 022237 228 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 280 (300)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g 280 (300)
..+-..|+.+ ....++..++.|++..+.+++...++++.+.|
T Consensus 228 ----~~~v~spgGt-------T~~~l~~le~~g~~~~~~~av~aa~~r~~el~ 269 (280)
T 3tri_A 228 ----RQFVTSPGGT-------TEQAIKVLESGNLRELFIKALTAAVNRAKELS 269 (280)
T ss_dssp ----HHHHCCTTSH-------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHhccCCChH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 1222344333 34566777899999999999999888887754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=139.20 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=127.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC--CCCCHHH-HhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFE-VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~--~~~~~~e-~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++||+.|.++|+ +|++|||++++++.+.+.|+. ...++.+ ++++||+||+|||.. .+.+++.++...+
T Consensus 44 mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~~l~~~l---- 118 (314)
T 3ggo_A 44 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAKKLSYIL---- 118 (314)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHHHHHHHHhhcc----
Confidence 79999999999999 999999999999999888873 4567888 899999999999987 6777775543332
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCC----hHhhh----cCceEEEec---cCHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGG----VLAAE----AGTLTFMVG---GSED 143 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~----~~~~~----~g~~~~~~~---g~~~ 143 (300)
+++++|+|++++++...+.+.+.+.. +|+. +|++|+ +..+. .|..++++. ++++
T Consensus 119 -~~~~iv~d~~Svk~~~~~~~~~~l~~-------------~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~ 184 (314)
T 3ggo_A 119 -SEDATVTDQGSVKGKLVYDLENILGK-------------RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKK 184 (314)
T ss_dssp -CTTCEEEECCSCCTHHHHHHHHHHGG-------------GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHH
T ss_pred -CCCcEEEECCCCcHHHHHHHHHhcCC-------------CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHH
Confidence 45689999999998888777776532 3454 577663 44333 466677774 5789
Q ss_pred HHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHH
Q 022237 144 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 181 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~ 181 (300)
.+++++++|+.+|.+++++++......+.+++.+-...
T Consensus 185 ~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~ 222 (314)
T 3ggo_A 185 RLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAV 222 (314)
T ss_dssp HHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877888888887665544
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-17 Score=150.58 Aligned_cols=179 Identities=21% Similarity=0.253 Sum_probs=131.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CCC-------------CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MGV-------------PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~-------------~~~~~~~e~~~~adiVii~vp~ 56 (300)
||++||..|+++||+|++||+++++++.+.+ .|. ..++++ +.+++||+||+|||.
T Consensus 16 MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeAVpe 94 (483)
T 3mog_A 16 MGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HALAAADLVIEAASE 94 (483)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGGGGCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHhcCCCEEEEcCCC
Confidence 8999999999999999999999999887654 232 234555 468999999999999
Q ss_pred hhhhh-hhhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhcCc
Q 022237 57 SSHVL-DVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGT 133 (300)
Q Consensus 57 ~~~~~-~v~~~~~~~l~~~~~~~~~iv-id~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~g~ 133 (300)
+.+++ +++.++...+ ++++++ .|+||.++. ++++.+.+ ...+.+.||+++ |+. .
T Consensus 95 ~~~vk~~v~~~l~~~~-----~~~~IlasntSti~i~---~ia~~~~~------p~~~ig~hf~~Pa~v~---------~ 151 (483)
T 3mog_A 95 RLEVKKALFAQLAEVC-----PPQTLLTTNTSSISIT---AIAAEIKN------PERVAGLHFFNPAPVM---------K 151 (483)
T ss_dssp CHHHHHHHHHHHHHHS-----CTTCEEEECCSSSCHH---HHTTTSSS------GGGEEEEEECSSTTTC---------C
T ss_pred cHHHHHHHHHHHHHhh-----ccCcEEEecCCCCCHH---HHHHHccC------ccceEEeeecChhhhC---------C
Confidence 86664 4554433333 345677 578888875 33333321 112223566652 222 4
Q ss_pred eEEEecc---CHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 134 LTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 134 ~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
+..++++ +++.++.+.++++.+|+.++++++ .| +++||++.. .++|++.++++.+.|++++.+++..
T Consensus 152 Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~Nr~l~~----~~~Ea~~l~~~g~~~~~~id~a~~~ 222 (483)
T 3mog_A 152 LVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPG-----FIVNRVARP----YYSEAWRALEEQVAAPEVIDAALRD 222 (483)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT-----TTHHHHTHH----HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc-----chHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 5667776 789999999999999999999987 44 777887773 7899999999999999999999986
Q ss_pred cCC
Q 022237 210 SSA 212 (300)
Q Consensus 210 ~~~ 212 (300)
+.+
T Consensus 223 ~~G 225 (483)
T 3mog_A 223 GAG 225 (483)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-16 Score=134.71 Aligned_cols=183 Identities=16% Similarity=0.193 Sum_probs=127.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----------C--------------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------G--------------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----------g--------------~~~~~~~~e~~~~adiVii~vp 55 (300)
||++||..|+++|++|++||+++++++.+.+. | +..+.++.+++++||+||+|+|
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~ 94 (283)
T 4e12_A 15 LGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVKDADLVIEAVP 94 (283)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhccCCEEEEecc
Confidence 79999999999999999999999988776543 1 3456788899999999999999
Q ss_pred Chhhh-hhhhcCCCCcccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 56 SSSHV-LDVYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 56 ~~~~~-~~v~~~~~~~l~~~~~~~~~ivid-~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
.+.++ +.++.++...+ ++++++++ +|+.++ .++++.+.+ ...+.+.||++++ ..+.
T Consensus 95 ~~~~~~~~v~~~l~~~~-----~~~~il~s~tS~~~~---~~la~~~~~------~~~~ig~h~~~p~--------~~~~ 152 (283)
T 4e12_A 95 ESLDLKRDIYTKLGELA-----PAKTIFATNSSTLLP---SDLVGYTGR------GDKFLALHFANHV--------WVNN 152 (283)
T ss_dssp SCHHHHHHHHHHHHHHS-----CTTCEEEECCSSSCH---HHHHHHHSC------GGGEEEEEECSST--------TTSC
T ss_pred CcHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCH---HHHHhhcCC------CcceEEEccCCCc--------ccCc
Confidence 87544 34444332222 45578885 444443 344554432 1112224444321 1233
Q ss_pred eEEEecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 134 LTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 134 ~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
+..++.+ +++.++.++++++.+|+.+++++....+. ++++.+. ..+.|++.++++.+++++++.+++..+
T Consensus 153 lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~---i~nr~~~----~~~~ea~~l~~~g~~~~~~id~~~~~~ 225 (283)
T 4e12_A 153 TAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY---VLNSLLV----PLLDAAAELLVDGIADPETIDKTWRIG 225 (283)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT---THHHHHH----HHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE---EehHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 4555554 68999999999999999999985423333 3455554 568999999999999999999999866
Q ss_pred CC
Q 022237 211 SA 212 (300)
Q Consensus 211 ~~ 212 (300)
.+
T Consensus 226 ~g 227 (283)
T 4e12_A 226 TG 227 (283)
T ss_dssp HC
T ss_pred cC
Confidence 53
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-15 Score=130.55 Aligned_cols=165 Identities=16% Similarity=0.261 Sum_probs=127.0
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCC--CCCCHHHHhh-cCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~--~~~~~~e~~~-~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++++..|.++|+ +|++|||++++.+.+.+.|.. ...++.++++ ++|+||+|||.+ .+.+++.++...+
T Consensus 12 mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~~l~~~l---- 86 (281)
T 2g5c_A 12 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAKKLSYIL---- 86 (281)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHHHHHhhC----
Confidence 79999999999999 999999999999988888865 2567888899 999999999987 6677775432222
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCC----ChHhhh----cCceEEEe---ccCHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSG----GVLAAE----AGTLTFMV---GGSED 143 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g----~~~~~~----~g~~~~~~---~g~~~ 143 (300)
+++++|++++++++...+.+.+.+.. .++. +|+++ +|..+. .+..++++ +++++
T Consensus 87 -~~~~iv~~~~~~~~~~~~~l~~~l~~-------------~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~ 152 (281)
T 2g5c_A 87 -SEDATVTDQGSVKGKLVYDLENILGK-------------RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKK 152 (281)
T ss_dssp -CTTCEEEECCSCCTHHHHHHHHHHGG-------------GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHH
T ss_pred -CCCcEEEECCCCcHHHHHHHHHhccc-------------cceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHH
Confidence 34579999999998777777776642 1333 45544 334432 46656666 56888
Q ss_pred HHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHH
Q 022237 144 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 184 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~ 184 (300)
.++.++++|+.+|.+++++++......+|+++|...+....
T Consensus 153 ~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~ 193 (281)
T 2g5c_A 153 RLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFA 193 (281)
T ss_dssp HHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888777789999999887654333
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-16 Score=137.33 Aligned_cols=162 Identities=11% Similarity=0.101 Sum_probs=126.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhc----CCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA----SDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~----adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||++||+.|.++|++|++|||++++++.+.+.|+..+.++.+++++ +|+||+|||.. .+.+++.++...
T Consensus 19 mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~-~~~~vl~~l~~~------ 91 (341)
T 3ktd_A 19 IGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMT-AIDSLLDAVHTH------ 91 (341)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHH-HHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHH-HHHHHHHHHHcc------
Confidence 7999999999999999999999999999988898777888887764 69999999965 788888643322
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCCh-Hhhh-------cCceEEEecc---CHH-
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV-LAAE-------AGTLTFMVGG---SED- 143 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~-~~~~-------~g~~~~~~~g---~~~- 143 (300)
+++++|+|++++++...+.+.+... +.+|+. +|++|+. .+.. .|..++++.+ +++
T Consensus 92 ~~~~iv~Dv~Svk~~i~~~~~~~~~------------~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~ 159 (341)
T 3ktd_A 92 APNNGFTDVVSVKTAVYDAVKARNM------------QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTD 159 (341)
T ss_dssp CTTCCEEECCSCSHHHHHHHHHTTC------------GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCC
T ss_pred CCCCEEEEcCCCChHHHHHHHHhCC------------CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhh
Confidence 3458999999999988777765432 156777 7988864 2211 3445777764 456
Q ss_pred -------HHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHH
Q 022237 144 -------AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 181 (300)
Q Consensus 144 -------~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~ 181 (300)
.+++++++|+.+|.+++++++......+.+++.+-...
T Consensus 160 ~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~i 204 (341)
T 3ktd_A 160 INSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHIL 204 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHH
Confidence 88999999999999999998877777777776665543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=131.13 Aligned_cols=162 Identities=15% Similarity=0.238 Sum_probs=123.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-C-------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g-------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||+.+++.|.++|++|++|||++++.+.+.+. + .. ..++.++++++|+||+|+|.+ .+++++.++...+
T Consensus 12 ~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~~-~~~~~~~~l~~~~- 88 (212)
T 1jay_A 12 LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPWE-HAIDTARDLKNIL- 88 (212)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCHH-HHHHHHHHTHHHH-
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCChh-hHHHHHHHHHHHc-
Confidence 78999999999999999999999988776543 2 22 357788889999999999876 6777776443222
Q ss_pred CCCCCCCeEEEEcCC-CC-----------HHHHHHHHHHHhhhhhhhccCCCCCceEEEe--ccCCChHhh--hcCceEE
Q 022237 73 GGNSVRPQLLIDSST-ID-----------PQTSRNISAAVSNCILKEKKDSWENPVMLDA--PVSGGVLAA--EAGTLTF 136 (300)
Q Consensus 73 ~~~~~~~~ivid~st-~~-----------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--pv~g~~~~~--~~g~~~~ 136 (300)
++++++++++ .. |...+++++.+.. .+++.+ |+.+..... ..+.+++
T Consensus 89 -----~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (212)
T 1jay_A 89 -----REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES------------EKVVSALHTIPAARFANLDEKFDWDV 151 (212)
T ss_dssp -----TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC------------SCEEECCTTCCHHHHHCTTCCCCEEE
T ss_pred -----CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC------------CeEEEEccchHHHHhhCcCCCCCccE
Confidence 2479999887 33 2335667666532 466765 555544433 4566788
Q ss_pred EeccC-HHHHHHHHHHHHhc-CCCeEeeCCccHHHHHHHHHHHHHHHH
Q 022237 137 MVGGS-EDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVS 182 (300)
Q Consensus 137 ~~~g~-~~~~~~~~~ll~~l-g~~~~~~g~~g~a~~~k~~~n~~~~~~ 182 (300)
+++++ ++.++.++++|+.+ |..++++++.+.+..+|+++|++.+..
T Consensus 152 ~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 152 PVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp EEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHH
Confidence 88885 88999999999999 999999999999999999999988654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=134.56 Aligned_cols=180 Identities=16% Similarity=0.278 Sum_probs=123.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH-----------hCC------------------CCCCCCHHHHhhcCCEEE
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG------------------VPTKETPFEVAEASDVVI 51 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g------------------~~~~~~~~e~~~~adiVi 51 (300)
||++||..|+++||+|++|||++++++.+. +.| +..+.++.+++++||+||
T Consensus 26 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi 105 (302)
T 1f0y_A 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVV 105 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHHHhhcCCCEEE
Confidence 799999999999999999999998877542 233 234567888899999999
Q ss_pred EecCChhhh-hhhhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhh
Q 022237 52 TMLPSSSHV-LDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 129 (300)
Q Consensus 52 i~vp~~~~~-~~v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~ 129 (300)
+|||.+.++ +.++.++...+ +++++|+ ++|+..+. ++++.+.. ...+.+.||++ |..
T Consensus 106 ~avp~~~~~~~~v~~~l~~~~-----~~~~iv~s~ts~i~~~---~l~~~~~~------~~~~~g~h~~~-P~~------ 164 (302)
T 1f0y_A 106 EAIVENLKVKNELFKRLDKFA-----AEHTIFASNTSSLQIT---SIANATTR------QDRFAGLHFFN-PVP------ 164 (302)
T ss_dssp ECCCSCHHHHHHHHHHHTTTS-----CTTCEEEECCSSSCHH---HHHTTSSC------GGGEEEEEECS-STT------
T ss_pred EcCcCcHHHHHHHHHHHHhhC-----CCCeEEEECCCCCCHH---HHHHhcCC------cccEEEEecCC-Ccc------
Confidence 999987554 34554333332 3446776 44555544 33333321 11112244444 221
Q ss_pred hcCceEEEecc---CHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022237 130 EAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 205 (300)
Q Consensus 130 ~~g~~~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~ 205 (300)
.+.+..++++ +++.++.+.++++.+|+.++++++ .| ++++|++. ..++|++.++++.|++++++..
T Consensus 165 -~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g-----~i~nr~l~----~~~~Ea~~l~~~g~~~~~~id~ 234 (302)
T 1f0y_A 165 -VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG-----FIVNRLLV----PYLMEAIRLYERGDASKEDIDT 234 (302)
T ss_dssp -TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT-----TTHHHHHH----HHHHHHHHHHHTTSSCHHHHHH
T ss_pred -cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc-----ccHHHHHH----HHHHHHHHHHHcCCCCHHHHHH
Confidence 1233444554 789999999999999998888876 33 45666655 5689999999999999999998
Q ss_pred HHHhcC
Q 022237 206 ILNSSS 211 (300)
Q Consensus 206 ~~~~~~ 211 (300)
++..+.
T Consensus 235 ~~~~g~ 240 (302)
T 1f0y_A 235 AMKLGA 240 (302)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 887554
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=138.82 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=123.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH--------HHHHhCCC-------------CCCCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM--------KMFSDMGV-------------PTKETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~--------~~~~~~g~-------------~~~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||++||..|+++|++|++||+++++. +++.+.|. ..+++++ ++++||+||+|||.+.+
T Consensus 65 MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~ 143 (460)
T 3k6j_A 65 MGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMK 143 (460)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHH
T ss_pred HHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHH
Confidence 89999999999999999999999843 23444442 2456664 68999999999998766
Q ss_pred hhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEE
Q 022237 60 VLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 137 (300)
Q Consensus 60 ~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~ 137 (300)
++. ++.++... .+++++|+ ++||.++. ++++.+.+ +.++.+.||++ |+.. ..+.-+
T Consensus 144 vk~~v~~~l~~~-----~~~~aIlasnTSsl~i~---~ia~~~~~------p~r~iG~Hffn-Pv~~-------m~LvEI 201 (460)
T 3k6j_A 144 LKKELFANLENI-----CKSTCIFGTNTSSLDLN---EISSVLRD------PSNLVGIHFFN-PANV-------IRLVEI 201 (460)
T ss_dssp HHHHHHHHHHTT-----SCTTCEEEECCSSSCHH---HHHTTSSS------GGGEEEEECCS-STTT-------CCEEEE
T ss_pred HHHHHHHHHHhh-----CCCCCEEEecCCChhHH---HHHHhccC------CcceEEEEecc-hhhh-------CCEEEE
Confidence 654 44433333 34557775 55665553 44443322 11222356666 3321 223334
Q ss_pred ecc---CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 138 VGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 138 ~~g---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
+.+ +++.++.+.++++.+|+.++++++ ..+. ++|+++. ..++|++.++++.|++++++.+++.
T Consensus 202 v~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d-~pGf---i~Nril~----~~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 202 IYGSHTSSQAIATAFQACESIKKLPVLVGN-CKSF---VFNRLLH----VYFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp ECCSSCCHHHHHHHHHHHHHTTCEEEEESS-CCHH---HHHHHHH----HHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCEEEEEec-ccHH---HHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 443 789999999999999999999987 4443 4566655 4689999999999999999999986
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-15 Score=128.13 Aligned_cols=183 Identities=13% Similarity=0.165 Sum_probs=132.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||+++++.|.++|++|++|||++++++.+.+.|.. ...++.++ +++|+||+|+|.+ .+++++.++...+ ++
T Consensus 11 ~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~-~~~~~~~~l~~~~-----~~ 83 (279)
T 2f1k_A 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQ-LILPTLEKLIPHL-----SP 83 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHH-HHHHHHHHHGGGS-----CT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHH-HHHHHHHHHHhhC-----CC
Confidence 79999999999999999999999999998877764 35678888 9999999999976 7778876543332 34
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCC----ChHhhh----cCceEEEec---cCHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSG----GVLAAE----AGTLTFMVG---GSEDAYQ 146 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g----~~~~~~----~g~~~~~~~---g~~~~~~ 146 (300)
+++|++++++++...+.+.+.+. +++. .|+.| +|..+. .+..++++. ++++.++
T Consensus 84 ~~~vv~~~~~~~~~~~~~~~~~~--------------~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~ 149 (279)
T 2f1k_A 84 TAIVTDVASVKTAIAEPASQLWS--------------GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLA 149 (279)
T ss_dssp TCEEEECCSCCHHHHHHHHHHST--------------TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHhC--------------CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHH
Confidence 57999999998887666554332 2343 36654 333322 344555553 4788999
Q ss_pred HHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHH
Q 022237 147 AAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS--ASTLTKILN 208 (300)
Q Consensus 147 ~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~--~~~~~~~~~ 208 (300)
.++++|+.+|.+++++++.......|++.|...+... ++.++ +.+.|.+ .+....++.
T Consensus 150 ~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~~~~~~~~~~~l~~ 209 (279)
T 2f1k_A 150 CLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEKDGDILKLAQNLAS 209 (279)
T ss_dssp HHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcccccchhHHHhhcC
Confidence 9999999999989999888888999999997554433 33443 4456665 455555543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-15 Score=131.76 Aligned_cols=255 Identities=11% Similarity=0.128 Sum_probs=152.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CC--------------CCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--------------PTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~--------------~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
||+.+|..|+++||+|++|||++++++.+.+. +. ....+++++++++|+||+|+|.+ ..++++.
T Consensus 15 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~~~~~~~ 93 (359)
T 1bg6_A 15 GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAI-HHASIAA 93 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSCGG-GHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCCch-HHHHHHH
Confidence 79999999999999999999999999888765 21 23567888889999999999988 5677775
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE---eccCCC---hHhhh----cCceE
Q 022237 66 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD---APVSGG---VLAAE----AGTLT 135 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~pv~g~---~~~~~----~g~~~ 135 (300)
++...+ .++++||++.+..+.. .++.+.+.+. + ...+.|++ .|+.+. |.... .+.+.
T Consensus 94 ~l~~~l-----~~~~~vv~~~~~~~~~-~~~~~~l~~~------~-~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~~ 160 (359)
T 1bg6_A 94 NIASYI-----SEGQLIILNPGATGGA-LEFRKILREN------G-APEVTIGETSSMLFTCRSERPGQVTVNAIKGAMD 160 (359)
T ss_dssp HHGGGC-----CTTCEEEESSCCSSHH-HHHHHHHHHT------T-CCCCEEEEESSCSEEEECSSTTEEEEEEECSCEE
T ss_pred HHHHhC-----CCCCEEEEcCCCchHH-HHHHHHHHhc------C-CCCeEEEEecCCcEEEEeCCCCEEEEEEeecceE
Confidence 443333 3457888886644433 3344444431 1 01133443 444332 11111 12211
Q ss_pred EEe---ccCHHHHHHHHHHHHhcCCCeEeeCCc-------------------cHHHHHH------HH---HHHHHHHHHH
Q 022237 136 FMV---GGSEDAYQAAKPLFLSMGKNTIYCGGA-------------------GNGAAAK------IC---NNLTMAVSML 184 (300)
Q Consensus 136 ~~~---~g~~~~~~~~~~ll~~lg~~~~~~g~~-------------------g~a~~~k------~~---~n~~~~~~~~ 184 (300)
+-. +++++.++.++++|..+. ...++ +.+...| +- .+........
T Consensus 161 ~g~~~~~~~~~~~~~l~~~~~~~~----~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 1bg6_A 161 FACLPAAKAGWALEQIGSVLPQYV----AVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEK 236 (359)
T ss_dssp EEEESGGGHHHHHHHHTTTCTTEE----ECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHH
T ss_pred EEeccccccHHHHHHHHHHhhhcE----EcCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHH
Confidence 111 234556677777775542 11110 1111111 11 2234566788
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccc--ccCCCCCCcccCCCCCCCCCC-CcchhhHHHHH----HHHHHHHH
Q 022237 185 GVSEALTLGQSLGISASTLTKILNSSSARCWSS--DSYNPVPGVMEGVPASRNYGG-GFASKLMAKDL----NLALASAK 257 (300)
Q Consensus 185 ~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kd~----~~~~~~a~ 257 (300)
++.|+..++++.|++++.+.+.+......++.. +... .+.+.++ + ..+ .+......||+ ..+.++++
T Consensus 237 ~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~-~~sm~~d-~----~~~~e~~~~~~~~D~~~~~g~~~~~a~ 310 (359)
T 1bg6_A 237 VDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQ-GNPAYRG-I----AGPINLNTRYFFEDVSTGLVPLSELGR 310 (359)
T ss_dssp HHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHH-TCGGGTT-C----BCCSSSCCHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHh-cchhhcC-C----CCCCCCCccceecCcCccHHHHHHHHH
Confidence 999999999999999877777765543322210 0000 1112221 1 111 22222678998 79999999
Q ss_pred HcCCCchHHHHHHHHHHHHHHc
Q 022237 258 EVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
++|+++|+.+.++++++.....
T Consensus 311 ~~gv~~P~~~~l~~~~~~~~~~ 332 (359)
T 1bg6_A 311 AVNVPTPLIDAVLDLISSLIDT 332 (359)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTC
T ss_pred HcCCCchHHHHHHHHHHHHHCC
Confidence 9999999999999999887665
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=127.08 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=124.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|..|.++|++|++|||+++. ++.++++++|+||+|||.+ .+++++.++...+ ++++
T Consensus 33 mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~~-~~~~vl~~l~~~l-----~~~~ 93 (298)
T 2pv7_A 33 LGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPIN-LTLETIERLKPYL-----TENM 93 (298)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCGG-GHHHHHHHHGGGC-----CTTS
T ss_pred HHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCCHH-HHHHHHHHHHhhc-----CCCc
Confidence 7999999999999999999998762 5678889999999999987 6888886543333 3457
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCceEEEecc-CHHHHHHHHHHHHhcCCC
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKN 158 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~lg~~ 158 (300)
+|+|+++++....+.+.+... .+++. +|++|++.....+..++++.+ +++.++.++++|+.+|.+
T Consensus 94 iv~~~~svk~~~~~~~~~~~~-------------~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~ 160 (298)
T 2pv7_A 94 LLADLTSVKREPLAKMLEVHT-------------GAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 160 (298)
T ss_dssp EEEECCSCCHHHHHHHHHHCS-------------SEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCE
T ss_pred EEEECCCCCcHHHHHHHHhcC-------------CCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCCE
Confidence 999999998876665544321 35555 588876654445655666644 678899999999999998
Q ss_pred eEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022237 159 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 206 (300)
Q Consensus 159 ~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 206 (300)
++++++......++++.+...+.... +.+++ .+.|++.+...++
T Consensus 161 ~~~~~~~~~d~~~a~~~~~p~~~a~~-l~~~l---~~~g~~~~~~~~l 204 (298)
T 2pv7_A 161 IYQTNATEHDHNMTYIQALRHFSTFA-NGLHL---SKQPINLANLLAL 204 (298)
T ss_dssp EEECCHHHHHHHHHHHTHHHHHHHHH-HHHHH---TTSSCCHHHHHHT
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhcCCCHHHHHhh
Confidence 88888766788888888776543322 22322 2467777655543
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=122.71 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=109.6
Q ss_pred ChHHHHHHHHhCCCeEEE-EcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~-~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||+++++.|.++|++|++ |||++++++++.+. |.....+..+.++++|+||+|+|.. .+++++.++.. + +
T Consensus 34 mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~~l~~-~------~ 105 (220)
T 4huj_A 34 IGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SIADIVTQVSD-W------G 105 (220)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GHHHHHTTCSC-C------T
T ss_pred HHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HHHHHHHHhhc-c------C
Confidence 799999999999999999 99999999887654 6665556677789999999999865 88889876543 2 2
Q ss_pred CeEEEEcCCCCH------------HHHHHHHHHHhhhhhhhccCCCCCceEEEeccCC-ChHhhhcCceEEEeccCHHHH
Q 022237 79 PQLLIDSSTIDP------------QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG-GVLAAEAGTLTFMVGGSEDAY 145 (300)
Q Consensus 79 ~~ivid~st~~p------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g-~~~~~~~g~~~~~~~g~~~~~ 145 (300)
+++||++++..+ ...+.+++.+....+. . .+.++.+++.. ++.....+...++.+.+++.+
T Consensus 106 ~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv--~----~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~~~~ 179 (220)
T 4huj_A 106 GQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVV--K----AFNTLPAAVLAADPDKGTGSRVLFLSGNHSDAN 179 (220)
T ss_dssp TCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEE--E----ESCSSCHHHHTSCSBCSSCEEEEEEEESCHHHH
T ss_pred CCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEE--E----CCCCCCHHHhhhCcccCCCCeeEEEeCCCHHHH
Confidence 479999886542 1556666665421000 0 01112223332 222111223344555678999
Q ss_pred HHHHHHHHhcCCCeEeeCCccHHHHHH
Q 022237 146 QAAKPLFLSMGKNTIYCGGAGNGAAAK 172 (300)
Q Consensus 146 ~~~~~ll~~lg~~~~~~g~~g~a~~~k 172 (300)
++++++|+.+|.+++++|+++.+..+.
T Consensus 180 ~~v~~l~~~~G~~~~~~G~l~~a~~~~ 206 (220)
T 4huj_A 180 RQVAELISSLGFAPVDLGTLAASGPIQ 206 (220)
T ss_dssp HHHHHHHHHTTCEEEECCSHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEeeCChhhcchhh
Confidence 999999999999999999987775543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=141.22 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=121.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH-----------HhCC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||++||..|+++||+|++||+++++++.. .+.| +..+.++ +++++||+||+|||+
T Consensus 325 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIeaV~e 403 (715)
T 1wdk_A 325 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGNVDLVVEAVVE 403 (715)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGGCSEEEECCCS
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCCCCEEEEcCCC
Confidence 89999999999999999999999987763 2334 2234566 678999999999999
Q ss_pred hhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++. ++.++... .+++++++ ++||.++. ++++.+.. ...+.+.||++ |+.. +.+
T Consensus 404 ~~~vk~~v~~~l~~~-----~~~~~IlasntStl~i~---~la~~~~~------~~~~ig~hf~~-P~~~-------~~l 461 (715)
T 1wdk_A 404 NPKVKQAVLAEVENH-----VREDAILASNTSTISIS---LLAKALKR------PENFVGMHFFN-PVHM-------MPL 461 (715)
T ss_dssp CHHHHHHHHHHHHTT-----SCTTCEEEECCSSSCHH---HHGGGCSC------GGGEEEEECCS-STTT-------CCE
T ss_pred CHHHHHHHHHHHHhh-----CCCCeEEEeCCCCCCHH---HHHHHhcC------ccceEEEEccC-Cccc-------Cce
Confidence 876654 44333222 24456776 45555554 33333321 11122355655 3322 223
Q ss_pred EEEecc---CHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 135 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 135 ~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
..++.| ++++++.+.++++.+|+.++++++ .|. ++|+++. ..++|++.++++ |++++++.+++ .+
T Consensus 462 vevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~~~id~~~-~~ 530 (715)
T 1wdk_A 462 VEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF-----LVNRVLF----PYFGGFAKLVSA-GVDFVRIDKVM-EK 530 (715)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH-HH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCCh-----hhhHHHH----HHHHHHHHHHHC-CCCHHHHHHHH-HH
Confidence 333443 789999999999999999999987 443 4455554 568999999998 99999999998 44
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=139.89 Aligned_cols=177 Identities=18% Similarity=0.198 Sum_probs=121.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||++||..|+++||+|++||+++++++...+ .| +..++++ +++++||+||+|||+
T Consensus 323 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIeaVpe 401 (725)
T 2wtb_A 323 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRDVDMVIEAVIE 401 (725)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTTCSEEEECCCS
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCCCCEEEEcCcC
Confidence 8999999999999999999999998766422 22 1234555 578999999999999
Q ss_pred hhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+.+++. ++.++...+ +++++++ ++||.++. ++++.+.. ...+.+.||++ |+.. ..+
T Consensus 402 ~~~vk~~v~~~l~~~~-----~~~~IlasntStl~i~---~la~~~~~------p~~~iG~hf~~-P~~~-------~~l 459 (725)
T 2wtb_A 402 NISLKQQIFADLEKYC-----PQHCILASNTSTIDLN---KIGERTKS------QDRIVGAHFFS-PAHI-------MPL 459 (725)
T ss_dssp CHHHHHHHHHHHHHHS-----CTTCEEEECCSSSCHH---HHTTTCSC------TTTEEEEEECS-STTT-------CCE
T ss_pred CHHHHHHHHHHHHhhC-----CCCcEEEeCCCCCCHH---HHHHHhcC------CCCEEEecCCC-Cccc-------Cce
Confidence 876654 443332222 3456765 45565554 23332221 12223467766 3322 223
Q ss_pred EEEecc---CHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 022237 135 TFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 210 (300)
Q Consensus 135 ~~~~~g---~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 210 (300)
..++.| ++++++.+.++++.+|+.++++++ +|. ++|+.+. ..++|++.++++ |++++++.+++ .+
T Consensus 460 vevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~e~id~~~-~~ 528 (725)
T 2wtb_A 460 LEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGF-----AVNRMFF----PYTQAAMFLVEC-GADPYLIDRAI-SK 528 (725)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESSTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH-HH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHH----HHHHHHHHHHHC-CCCHHHHHHHH-HH
Confidence 444444 789999999999999999999987 443 3455444 568999999998 99999999998 44
Q ss_pred C
Q 022237 211 S 211 (300)
Q Consensus 211 ~ 211 (300)
.
T Consensus 529 ~ 529 (725)
T 2wtb_A 529 F 529 (725)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-15 Score=127.33 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=119.4
Q ss_pred ChHHHHHHHHhCCCeE-EEEcCChhhHHHHHh-CCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V-~~~dr~~~~~~~~~~-~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||++|++.|.++ ++| .+|||++++++++.+ .|. .+.+++++++++|+||+|||++ .+++++.++. .+
T Consensus 13 mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~-~~~~v~~~l~--------~~ 81 (276)
T 2i76_A 13 LTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDR-YIKTVANHLN--------LG 81 (276)
T ss_dssp HHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTT-THHHHHTTTC--------CS
T ss_pred HHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChH-HHHHHHHHhc--------cC
Confidence 799999999998 999 599999999988864 366 6667788888999999999998 6788886542 23
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh-cCceEEEeccCHHHHHHHHHHHHhcCC
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGGSEDAYQAAKPLFLSMGK 157 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~-~g~~~~~~~g~~~~~~~~~~ll~~lg~ 157 (300)
+++||++|+..+.+.. .+. . . ...+...|+++++.... ...+.++++++++.++.++++++.+|.
T Consensus 82 ~~ivi~~s~~~~~~~l--~~~-~-------~----~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~ 147 (276)
T 2i76_A 82 DAVLVHCSGFLSSEIF--KKS-G-------R----ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISG 147 (276)
T ss_dssp SCCEEECCSSSCGGGG--CSS-S-------E----EEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCS
T ss_pred CCEEEECCCCCcHHHH--HHh-h-------c----cccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCC
Confidence 4789999876555321 110 0 0 01222335566454433 344467777888889999999999999
Q ss_pred CeEeeCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHH
Q 022237 158 NTIYCGGAGN---GAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS--TLTKILN 208 (300)
Q Consensus 158 ~~~~~g~~g~---a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~--~~~~~~~ 208 (300)
+++++++.+. ....+++.|++. ..+.|+..++++.|++.+ .+.+++.
T Consensus 148 ~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~Gl~~~~a~~~~l~~ 199 (276)
T 2i76_A 148 KYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLGLDEPELLIHTLMK 199 (276)
T ss_dssp CEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 8999986443 245567777655 456778889999999987 4444444
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=123.05 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=110.6
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCC--CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc-ccCCC
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL-LQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~--~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~-l~~~~ 75 (300)
||++++..|.++ |++|++|||++++.+.+.+.|.. .+.++.++++++|+||+|||.+ .+++++.++... +
T Consensus 17 mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~~l~~~~l---- 91 (290)
T 3b1f_A 17 IGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDFIKILADLDL---- 91 (290)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHHHHHHHTSCC----
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHHHHHHHhcCC----
Confidence 799999999988 67999999999999988887763 4567788889999999999987 667787654333 3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCC----ChHhhh----cCceEEEe---ccCHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSG----GVLAAE----AGTLTFMV---GGSED 143 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g----~~~~~~----~g~~~~~~---~g~~~ 143 (300)
+++++|+|++++++...+.+.+.+.+ . +++++. +|++| ++..+. .|..++++ +++++
T Consensus 92 -~~~~ivi~~~~~~~~~~~~l~~~l~~------~----~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~ 160 (290)
T 3b1f_A 92 -KEDVIITDAGSTKYEIVRAAEYYLKD------K----PVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPN 160 (290)
T ss_dssp -CTTCEEECCCSCHHHHHHHHHHHHTT------S----SCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTT
T ss_pred -CCCCEEEECCCCchHHHHHHHHhccc------c----CCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHH
Confidence 24589999999988777777776642 0 256776 67765 333322 45544444 35788
Q ss_pred HHHHHHHHHHhcCCCeEeeCC
Q 022237 144 AYQAAKPLFLSMGKNTIYCGG 164 (300)
Q Consensus 144 ~~~~~~~ll~~lg~~~~~~g~ 164 (300)
.++.++++|+.+|.+++++++
T Consensus 161 ~~~~v~~l~~~~G~~~~~~~~ 181 (290)
T 3b1f_A 161 TIPALQDLLSGLHARYVEIDA 181 (290)
T ss_dssp HHHHHHHHTGGGCCEEEECCH
T ss_pred HHHHHHHHHHHcCCEEEEcCH
Confidence 899999999999998888875
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-15 Score=126.62 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=105.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++++++|.+.|++|++|||+++ .+.+...|+... ++.++++++|+||+|||.+ ++++++ ++.. ..+++
T Consensus 30 mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~-~l~~------~~~~~ 99 (201)
T 2yjz_A 30 FGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA-ELAD------SLKGR 99 (201)
Confidence 899999999999999999999987 555655566655 7888889999999999986 777776 2221 13457
Q ss_pred EEEEcCCCCHHH------HHHHHHHHhhhhhhhccCCCCCceEEEe-ccCCChHhhhcCce-----EEEeccCHHHHHHH
Q 022237 81 LLIDSSTIDPQT------SRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTL-----TFMVGGSEDAYQAA 148 (300)
Q Consensus 81 ivid~st~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~g~~~~~~~g~~-----~~~~~g~~~~~~~~ 148 (300)
+|||+++..|.. .+.+.+.+.. ...+.+ |..+. .....|.+ ++++|++++.++++
T Consensus 100 ivI~~~~G~~~~~~~~~~~~~l~~~~~~------------~~vvra~~n~~a-~~~~~g~l~g~~~~~~~g~~~~~~~~v 166 (201)
T 2yjz_A 100 VLIDVSNNQKMNQYPESNAEYLAQLVPG------------AHVVKAFNTISA-WALQSGTLDASRQVFVCGNDSKAKDRV 166 (201)
Confidence 999999887632 2233332221 011110 10000 01111221 56677788899999
Q ss_pred HHHHHhcCCCeEeeCCccHHHHHHHH
Q 022237 149 KPLFLSMGKNTIYCGGAGNGAAAKIC 174 (300)
Q Consensus 149 ~~ll~~lg~~~~~~g~~g~a~~~k~~ 174 (300)
+++|+.+|.+++++|+++.+..+|.+
T Consensus 167 ~~ll~~~G~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 167 MDIARTLGLTPLDQGSLVAAKEIENY 192 (201)
Confidence 99999999999999999999999865
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=127.65 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=119.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC-----------CCCCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-----------VPTKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-----------~~~~~~~~e~~~~adiVii~vp~~~ 58 (300)
||++||..|+++||+|++||+++++++...+ .| .+.+.++ +.+++||+||+|||.+.
T Consensus 48 MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~aDlVIeaVpe~~ 126 (463)
T 1zcj_A 48 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVDLVVEAVFEDM 126 (463)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTCSEEEECCCSCH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCCCEEEEcCCCCH
Confidence 8999999999999999999999988765432 11 1234566 56889999999999875
Q ss_pred hhh-hhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEE
Q 022237 59 HVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 137 (300)
Q Consensus 59 ~~~-~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~ 137 (300)
+++ +++.++...+ +++++|+. +|.++... ++++.+.. ...+.+.||+ .|+.. ..+..+
T Consensus 127 ~~k~~v~~~l~~~~-----~~~~ii~s-nTs~~~~~-~la~~~~~------~~~~ig~hf~-~P~~~-------~~lvev 185 (463)
T 1zcj_A 127 NLKKKVFAELSALC-----KPGAFLCT-NTSALNVD-DIASSTDR------PQLVIGTHFF-SPAHV-------MRLLEV 185 (463)
T ss_dssp HHHHHHHHHHHHHS-----CTTCEEEE-CCSSSCHH-HHHTTSSC------GGGEEEEEEC-SSTTT-------CCEEEE
T ss_pred HHHHHHHHHHHhhC-----CCCeEEEe-CCCCcCHH-HHHHHhcC------CcceEEeecC-CCccc-------ceeEEE
Confidence 544 3444333232 34567775 55555444 56554432 1112235665 34332 223333
Q ss_pred ec---cCHHHHHHHHHHHHhcCCCeEeeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 138 VG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 138 ~~---g~~~~~~~~~~ll~~lg~~~~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
+. ++++.++.+.++++.+|+.++++++ .|. .+++++. ...+|++.++++ |++++++.+++.
T Consensus 186 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gf-----i~Nrll~----~~~~ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 186 IPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGF-----VGNRMLA----PYYNQGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHH----HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 43 4889999999999999999999987 343 3344444 245999999988 899999999886
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=114.42 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=112.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++++.|.+.|++|++|||++++.+.+.+.|+... +..++++++|+||+|+|.. .+++++. +... . +++
T Consensus 39 ~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~~-~~~~v~~-l~~~-----~-~~~ 109 (215)
T 2vns_A 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFRE-HYSSLCS-LSDQ-----L-AGK 109 (215)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCGG-GSGGGGG-GHHH-----H-TTC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCChH-HHHHHHH-HHHh-----c-CCC
Confidence 7999999999999999999999999988877776654 7888899999999999965 6666663 2222 2 458
Q ss_pred EEEEcCCCCHHHHHH----HHHHHhhhhhhhccCCCCCceEEEe--ccCCChHh--hhcCc-eEEEeccCHHHHHHHHHH
Q 022237 81 LLIDSSTIDPQTSRN----ISAAVSNCILKEKKDSWENPVMLDA--PVSGGVLA--AEAGT-LTFMVGGSEDAYQAAKPL 151 (300)
Q Consensus 81 ivid~st~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--pv~g~~~~--~~~g~-~~~~~~g~~~~~~~~~~l 151 (300)
+|||+++..+....+ ..+.+.+. .. +.+++.+ ++.+.+.. ...+. .+++.+++++.++.++++
T Consensus 110 ~vv~~s~g~~~~~l~~~~~~~~~l~~~----l~----~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~l 181 (215)
T 2vns_A 110 ILVDVSNPTEQEHLQHRESNAEYLASL----FP----TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEM 181 (215)
T ss_dssp EEEECCCCCHHHHHHCSSCHHHHHHHH----CT----TSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCcccccccccccHHHHHHHH----CC----CCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHHH
Confidence 999999988754321 11222210 00 1222221 22111100 11222 356677799999999999
Q ss_pred HHhcCCCeEeeCCccHHHHHHHHHHHH
Q 022237 152 FLSMGKNTIYCGGAGNGAAAKICNNLT 178 (300)
Q Consensus 152 l~~lg~~~~~~g~~g~a~~~k~~~n~~ 178 (300)
|+.+|.+++++|+++.+..++...+++
T Consensus 182 l~~~G~~~~~~g~~~~~~~~e~~~~~~ 208 (215)
T 2vns_A 182 ALAMGFMPVDMGSLASAWEVEAMPLRL 208 (215)
T ss_dssp HHHTTCEEEECCSGGGHHHHHHSCCBC
T ss_pred HHHcCCceEeecchhhhhHhhhhhhhh
Confidence 999999999999999999998654444
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.6e-14 Score=117.99 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=101.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|..|+++|++|++|||+++ +++++|+||+|+| +..+++++.++...+ + ++
T Consensus 30 mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~~~l~~~~-----~-~~ 84 (209)
T 2raf_A 30 MGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALAKQYATQL-----K-GK 84 (209)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHHHHTHHHH-----T-TS
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHHHHHHHhc-----C-CC
Confidence 799999999999999999999976 4578999999999 458888887543333 2 47
Q ss_pred EEEEcCCCCH--H-------H----HHHHHHHHhhhhhhhccCCCCCceEEE------eccCCChHhhhcCceEEEecc-
Q 022237 81 LLIDSSTIDP--Q-------T----SRNISAAVSNCILKEKKDSWENPVMLD------APVSGGVLAAEAGTLTFMVGG- 140 (300)
Q Consensus 81 ivid~st~~p--~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~pv~g~~~~~~~g~~~~~~~g- 140 (300)
+|+++++.-+ . + .+.+.+.++ +.+++. +|.+..+.....+...+++++
T Consensus 85 ~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~------------~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~ 152 (209)
T 2raf_A 85 IVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP------------DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGN 152 (209)
T ss_dssp EEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT------------TSEEEECSTTSCHHHHHHSEETTTEECEEEEEES
T ss_pred EEEEECCCCCccccccccCCCCCcHHHHHHHHCC------------CCcEEEeeecccHhhccccccCCCCCceeEEcCC
Confidence 9999887332 1 1 444544432 135555 333322111111233555565
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 141 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 141 ~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
+++..+.++++|+.+|.+++++++++.+..+|.+.|++.
T Consensus 153 ~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~ 191 (209)
T 2raf_A 153 DDSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQM 191 (209)
T ss_dssp CHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHHH
Confidence 568899999999999999999999999999999988775
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.42 E-value=8e-12 Score=111.79 Aligned_cols=248 Identities=15% Similarity=0.147 Sum_probs=149.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~ 67 (300)
||+++|..|+++|++|++|+|+ ++.+.+.+.|.. ...++++ +..+|+||+|||.. ++++++..+
T Consensus 14 ~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~~-~~~~~~~~l 90 (335)
T 3ghy_A 14 VGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKAP-ALESVAAGI 90 (335)
T ss_dssp HHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCHH-HHHHHHGGG
T ss_pred HHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCch-hHHHHHHHH
Confidence 7999999999999999999996 677888777643 2346665 58999999999886 888898766
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH------------------HHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhh
Q 022237 68 NGLLQGGNSVRPQLLIDSSTIDP------------------QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 129 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~st~~p------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~ 129 (300)
.+.+ .++++||.+.+.-+ ...+.+.+.+....+ .. ++.+..+...+ |...
T Consensus 91 ~~~l-----~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v--~~----gv~~~~a~~~~-pg~v 158 (335)
T 3ghy_A 91 APLI-----GPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHV--LG----CVVHLTCATVS-PGHI 158 (335)
T ss_dssp SSSC-----CTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGE--EE----EEECCCEEESS-TTEE
T ss_pred HhhC-----CCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccE--EE----EEEEEEEEEcC-CcEE
Confidence 5544 23467776665421 112234444432100 00 01111111111 1111
Q ss_pred h-cCceEEEec----cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHH---------------------HHHHHHH
Q 022237 130 E-AGTLTFMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN---------------------LTMAVSM 183 (300)
Q Consensus 130 ~-~g~~~~~~~----g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n---------------------~~~~~~~ 183 (300)
. .+.-.+.+| .+.+..+.+.++|+.-+.++....++-...-.|++.| .......
T Consensus 159 ~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l~~ 238 (335)
T 3ghy_A 159 RHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFCL 238 (335)
T ss_dssp EECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHHHH
T ss_pred EECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHHHH
Confidence 1 111123344 2346678899999988877666656655555564433 2345678
Q ss_pred HHHHHHHHHHHHcCCCH----HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCc-chhhHHHHHHHHHHHHHH
Q 022237 184 LGVSEALTLGQSLGISA----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGF-ASKLMAKDLNLALASAKE 258 (300)
Q Consensus 184 ~~~~Ea~~l~~~~Gi~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~ 258 (300)
.++.|+.+++++.|++. +...+...... .++ +.+.+ |+..+- . -+...=...+++++++
T Consensus 239 ~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~------~~~---sSM~q------D~~~gr~~-tEid~i~G~vv~~a~~ 302 (335)
T 3ghy_A 239 AVMAEAKAIGARIGCPIEQSGEARSAVTRQLG------AFK---TSMLQ------DAEAGRGP-LEIDALVASVREIGLH 302 (335)
T ss_dssp HHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTC------SCC---CTTTC-----------CCC-CCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHhccC------CCC---cHHHH------HHHcCCCC-chHHHHhhHHHHHHHH
Confidence 89999999999999764 23333332211 111 12222 333222 1 1222335789999999
Q ss_pred cCCCchHHHHHHHHHHHHHHc
Q 022237 259 VGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 259 ~g~~~~~~~~~~~~~~~a~~~ 279 (300)
+|+++|..+.++++++.....
T Consensus 303 ~gv~~P~~~~l~~li~~~e~~ 323 (335)
T 3ghy_A 303 VGVPTPQIDTLLGLVRLHAQT 323 (335)
T ss_dssp HTCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999988876553
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-11 Score=108.22 Aligned_cols=242 Identities=12% Similarity=0.166 Sum_probs=148.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~ 67 (300)
||+++|..|+++|++|++| +++++++.+.+.|.. ...++++ +..+|+||+|||.. ++++++..+
T Consensus 30 ~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~~-~~~~~l~~l 106 (318)
T 3hwr_A 30 VGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKST-DTQSAALAM 106 (318)
T ss_dssp HHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCGG-GHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEcccc-cHHHHHHHH
Confidence 7999999999999999999 999999988876532 2345544 58999999999987 888888765
Q ss_pred CCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChH--hhhcCceEEEeccCHHH
Q 022237 68 NGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL--AAEAGTLTFMVGGSEDA 144 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~--~~~~g~~~~~~~g~~~~ 144 (300)
.+.+ .++++|+.+++ ..+. +.+.+.+.+. + .. ++.+..+...++.. ....|. +.+|. .+.
T Consensus 107 ~~~l-----~~~~~iv~~~nGi~~~--~~l~~~~~~~-v--l~----g~~~~~a~~~gP~~~~~~~~g~--~~ig~-~~~ 169 (318)
T 3hwr_A 107 KPAL-----AKSALVLSLQNGVENA--DTLRSLLEQE-V--AA----AVVYVATEMAGPGHVRHHGRGE--LVIEP-TSH 169 (318)
T ss_dssp TTTS-----CTTCEEEEECSSSSHH--HHHHHHCCSE-E--EE----EEEEEEEEEEETTEEEEEEEEE--EEECC-CTT
T ss_pred HHhc-----CCCCEEEEeCCCCCcH--HHHHHHcCCc-E--EE----EEEEEeEEEcCCeEEEEcCCce--EEEcC-CHH
Confidence 5444 23466665544 4443 2455544210 0 00 01111111222111 111232 33454 344
Q ss_pred HHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCCH---
Q 022237 145 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSEALTLGQSLGISA--- 200 (300)
Q Consensus 145 ~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gi~~--- 200 (300)
.+.++++|+..+.++....++-...-.|++.|... .....++.|+..++++.|++.
T Consensus 170 ~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~ 249 (318)
T 3hwr_A 170 GANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPDD 249 (318)
T ss_dssp THHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred HHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 57899999998888776667777888888777532 235578899999999999763
Q ss_pred --HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 201 --STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 201 --~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
+.+.+.+..... ..+.|.++ +.++.... ++.. ...++++++++|+++|..+.++++++....
T Consensus 250 ~~~~~~~~~~~~~~---------~~sSM~qD-~~~gr~tE---id~i---~G~vv~~a~~~gv~tP~~~~l~~ll~~~e~ 313 (318)
T 3hwr_A 250 VALAIRRIAETMPR---------QSSSTAQD-LARGKRSE---IDHL---NGLIVRRGDALGIPVPANRVLHALVRLIED 313 (318)
T ss_dssp HHHHHHHHHHHSTT---------CCCHHHHH-HHTTCCCS---GGGT---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---------CCcHHHHH-HHcCChhH---HHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Confidence 223333322110 01112221 11111111 1111 578899999999999999999988776543
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-10 Score=102.41 Aligned_cols=252 Identities=12% Similarity=0.097 Sum_probs=146.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------------CCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--------------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+.+|..|+++|++|++|+|++ .+.+.+.|.. ...++++ +..+|+||+|||.. ++++++..
T Consensus 13 iG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~-~~~~~l~~ 88 (312)
T 3hn2_A 13 LGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF-ANSRYEEL 88 (312)
T ss_dssp THHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG-GGGGHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC-CcHHHHHH
Confidence 79999999999999999999986 4677666532 1234444 67999999999887 77888876
Q ss_pred CCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc----C
Q 022237 67 PNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG----S 141 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g----~ 141 (300)
+.+.+. ++++||-+.+ ..+. +.+.+.+....+ .. ++.+..+-..++......+.-.+.+|. +
T Consensus 89 l~~~l~-----~~~~iv~l~nGi~~~--~~l~~~~~~~~v--~~----~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~ 155 (312)
T 3hn2_A 89 IRPLVE-----EGTQILTLQNGLGNE--EALATLFGAERI--IG----GVAFLCSNRGEPGEVHHLGAGRIILGEFLPRD 155 (312)
T ss_dssp HGGGCC-----TTCEEEECCSSSSHH--HHHHHHTCGGGE--EE----EEEEEECCBCSSSEEEECEEEEEEEEESSCCC
T ss_pred HHhhcC-----CCCEEEEecCCCCcH--HHHHHHCCCCcE--EE----EEEEeeeEEcCCcEEEECCCCeEEEecCCCCc
Confidence 555442 3356665444 4433 345555442100 00 111222212221111111222333332 3
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcC--C
Q 022237 142 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT---------------------MAVSMLGVSEALTLGQSLG--I 198 (300)
Q Consensus 142 ~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~---------------------~~~~~~~~~Ea~~l~~~~G--i 198 (300)
.+..+.+.++|+..+.++....++-...--|++-|.. ......++.|+.+++++.| +
T Consensus 156 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~~ 235 (312)
T 3hn2_A 156 TGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLAT 235 (312)
T ss_dssp SHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred cHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCcc
Confidence 5667889999999888876666676666666665553 2335678899999999999 5
Q ss_pred CH--HHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 022237 199 SA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 276 (300)
Q Consensus 199 ~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a 276 (300)
+. +.....+......+ .+ .+.+.++ +..+-. -+...=...+.++++++|+++|+.+.++++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~---~~---~sSM~qD------~~~gr~-tEid~i~G~vv~~a~~~gv~~P~~~~l~~ll~~~ 302 (312)
T 3hn2_A 236 FIADGYVDDMLEFTDAMG---EY---KPSMEID------REEGRP-LEIAAIFRTPLAYGAREGIAMPRVEMLATLLEQA 302 (312)
T ss_dssp CCCTTHHHHHHHHHTTSC---SC---CCHHHHH------HHTTCC-CCHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC---CC---CchHHHH------HHhCCC-ccHHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 52 22222222111000 11 1112211 111111 1112224788999999999999999999999987
Q ss_pred HHcCCC
Q 022237 277 CENGHD 282 (300)
Q Consensus 277 ~~~g~g 282 (300)
...|+-
T Consensus 303 ~~~~~~ 308 (312)
T 3hn2_A 303 TGEGHH 308 (312)
T ss_dssp TTC---
T ss_pred Hhcccc
Confidence 777653
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-14 Score=125.46 Aligned_cols=260 Identities=12% Similarity=0.066 Sum_probs=156.3
Q ss_pred ChHHHHHHHHhCCC--------eEEEEcCChhh-----HHHHHhC--------------CCCCCCCHHHHhhcCCEEEEe
Q 022237 1 MGFRMASNLMKAGY--------KMAVHDVNCNV-----MKMFSDM--------------GVPTKETPFEVAEASDVVITM 53 (300)
Q Consensus 1 mG~~la~~l~~~G~--------~V~~~dr~~~~-----~~~~~~~--------------g~~~~~~~~e~~~~adiVii~ 53 (300)
||++||..|+++|| +|.+|.|+++. .+.++.. ++..++++.++++++|+||++
T Consensus 45 WGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al~~ad~ii~a 124 (391)
T 4fgw_A 45 WGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSVKDVDIIVFN 124 (391)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHHhcCCEEEEE
Confidence 69999999999886 49999998763 3334332 234567889999999999999
Q ss_pred cCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC-CCHHH--HHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh
Q 022237 54 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST-IDPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 130 (300)
Q Consensus 54 vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st-~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~ 130 (300)
||.. .+++++.++.+.+. +++++|.++- ..+.+ .+.+.+.+.+. .+ ..+..+.+|.+..+....
T Consensus 125 vPs~-~~r~~l~~l~~~~~-----~~~~iv~~~KGie~~~~~~~~~se~i~e~-----~~--~~~~vLsGPs~A~EVa~~ 191 (391)
T 4fgw_A 125 IPHQ-FLPRICSQLKGHVD-----SHVRAISCLKGFEVGAKGVQLLSSYITEE-----LG--IQCGALSGANIATEVAQE 191 (391)
T ss_dssp SCGG-GHHHHHHHHTTTSC-----TTCEEEECCCSCEEETTEEECHHHHHHHH-----HC--CEEEEEECSCCHHHHHTT
T ss_pred CChh-hhHHHHHHhccccC-----CCceeEEeccccccccccchhHHHHHHHH-----hC--ccceeccCCchHHHhhcC
Confidence 9997 99999987655542 3466776653 22211 12233333321 01 124567888887766665
Q ss_pred cCceEEEeccCH---------HHHHHHHHHHHhcCCCeEeeCC---c--------------cHHHHHHHHHHHHHHHHHH
Q 022237 131 AGTLTFMVGGSE---------DAYQAAKPLFLSMGKNTIYCGG---A--------------GNGAAAKICNNLTMAVSML 184 (300)
Q Consensus 131 ~g~~~~~~~g~~---------~~~~~~~~ll~~lg~~~~~~g~---~--------------g~a~~~k~~~n~~~~~~~~ 184 (300)
..+..++++.+. ...+.++.+|..--.+++.-.+ . |....+++..|+..+.+..
T Consensus 192 ~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAALitr 271 (391)
T 4fgw_A 192 HWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRV 271 (391)
T ss_dssp CCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 555444443322 2346677777643333333333 2 3334455778999999999
Q ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHhcC--CCccccccCCCCCCccc-CCCCC---CCCCCCcchhhHHHHHHHHHHH
Q 022237 185 GVSEALTLGQSL---GISASTLTKILNSSS--ARCWSSDSYNPVPGVME-GVPAS---RNYGGGFASKLMAKDLNLALAS 255 (300)
Q Consensus 185 ~~~Ea~~l~~~~---Gi~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~kd~~~~~~~ 255 (300)
+++|+.+|+.++ |-++..+..+...+. ..+..++++..+..+.. +.... .... ...+.+..+..+.+.++
T Consensus 272 Gl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~sSRNr~~G~~lg~~G~~~~~~~~~~~-~g~v~EGv~ta~~v~~l 350 (391)
T 4fgw_A 272 GLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMATSGKDAWECEKELL-NGQSAQGLITCKEVHEW 350 (391)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHSSHHHHHHHHHHHTCCCHHHHHHHHH-TTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCceeecCCCcccceeEEecCCccHHHHHHHHhcCCCHHHHHHHHh-CCCEEehHHHHHHHHHH
Confidence 999999999998 444433322211110 00111333322111110 00000 0000 01234567778999999
Q ss_pred HHHcCC--CchHHHHHHHHHH
Q 022237 256 AKEVGV--DCPLTSQAQDIYA 274 (300)
Q Consensus 256 a~~~g~--~~~~~~~~~~~~~ 274 (300)
++++|+ +||+++++++++.
T Consensus 351 ~~~~~v~~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 351 LETCGSVEDFPLFEAVYQIVY 371 (391)
T ss_dssp HHHHTCSTTCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHh
Confidence 999999 8999999999876
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-11 Score=104.15 Aligned_cols=238 Identities=13% Similarity=0.093 Sum_probs=145.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC---------------CCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV---------------PTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~---------------~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
||+.+|..|+++|++|++|+|++ .+.+.+.|. ..+.+++++.+.+|+||+|||.. ++++++.
T Consensus 13 iG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~-~~~~~l~ 89 (320)
T 3i83_A 13 IGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV-EGADRVG 89 (320)
T ss_dssp HHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC-TTCCHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC-ChHHHHH
Confidence 79999999999999999999987 255655432 22356666666899999999987 7777776
Q ss_pred CCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCC-------Ch-HhhhcCceEE
Q 022237 66 GPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG-------GV-LAAEAGTLTF 136 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g-------~~-~~~~~g~~~~ 136 (300)
.+.+.+. ++++||.+.+ ..+. +.+.+.+.. -.++.+|.+. +. .....+ .+
T Consensus 90 ~l~~~l~-----~~t~Iv~~~nGi~~~--~~l~~~~~~------------~~vl~g~~~~~a~~~~pg~v~~~~~~--~~ 148 (320)
T 3i83_A 90 LLRDAVA-----PDTGIVLISNGIDIE--PEVAAAFPD------------NEVISGLAFIGVTRTAPGEIWHQAYG--RL 148 (320)
T ss_dssp HHTTSCC-----TTCEEEEECSSSSCS--HHHHHHSTT------------SCEEEEEEEEEEEEEETTEEEEEEEE--EE
T ss_pred HHHhhcC-----CCCEEEEeCCCCChH--HHHHHHCCC------------CcEEEEEEEeceEEcCCCEEEECCCC--EE
Confidence 5544442 3356665444 4333 344444432 1344444322 11 111122 33
Q ss_pred Eec----cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Q 022237 137 MVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT--------------------MAVSMLGVSEALTL 192 (300)
Q Consensus 137 ~~~----g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~--------------------~~~~~~~~~Ea~~l 192 (300)
.+| .+.+..+.+.++|+.-+.++....++....--|++-|.. ......++.|+..+
T Consensus 149 ~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~v 228 (320)
T 3i83_A 149 MLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAV 228 (320)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 343 345677889999999888877777777777777776642 22356788999999
Q ss_pred HHHcCCCHH-----HHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHH
Q 022237 193 GQSLGISAS-----TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 267 (300)
Q Consensus 193 ~~~~Gi~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~ 267 (300)
+++.|++.+ .+.+...... .+ .+.+.+ |+..+-. -+...=...++++++++|+++|+.+
T Consensus 229 a~a~G~~l~~~~~~~~~~~~~~~~------~~---~sSM~q------D~~~gr~-tEid~i~G~vv~~a~~~gv~~P~~~ 292 (320)
T 3i83_A 229 AAANGHPLPEDIVEKNVASTYKMP------PY---KTSMLV------DFEAGQP-METEVILGNAVRAGRRTRVAIPHLE 292 (320)
T ss_dssp HHHTTCCCCTTHHHHHHHHHHHSC------CC---CCHHHH------HHHHTCC-CCHHHHTHHHHHHHHHTTCCCHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHhcCC------CC---CCcHHH------HHHhCCC-chHHHHccHHHHHHHHhCCCCCHHH
Confidence 999997732 2222222111 00 111221 1111100 0111224788999999999999999
Q ss_pred HHHHHHHHHHH
Q 022237 268 QAQDIYAKLCE 278 (300)
Q Consensus 268 ~~~~~~~~a~~ 278 (300)
.++++++....
T Consensus 293 ~l~~~l~~~e~ 303 (320)
T 3i83_A 293 SVYALMKLLEL 303 (320)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988765443
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=116.00 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=125.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH-----------hCC--------------CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG--------------VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g--------------~~~~~~~~e~~~~adiVii~vp 55 (300)
||+.||..++.+|++|++||++++.++... +.| +..++++.+++++||+|+-|||
T Consensus 17 MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~ad~ViEav~ 96 (319)
T 3ado_A 17 VGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHIQECVP 96 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTTEEEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhccCcEEeeccc
Confidence 899999999999999999999998654332 222 2235678889999999999999
Q ss_pred Chhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCc
Q 022237 56 SSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 133 (300)
Q Consensus 56 ~~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~ 133 (300)
.+.+++. ++.+++.+. +++.|+- ++|+.++. ++++.+.+ +.++.+.||+.+|-.-....
T Consensus 97 E~l~iK~~lf~~l~~~~-----~~~aIlaSNTSsl~is---~ia~~~~~------p~r~ig~HffNP~~~m~LVE----- 157 (319)
T 3ado_A 97 ENLDLKRKIFAQLDSIV-----DDRVVLSSSSSCLLPS---KLFTGLAH------VKQCIVAHPVNPPYYIPLVE----- 157 (319)
T ss_dssp SCHHHHHHHHHHHHTTC-----CSSSEEEECCSSCCHH---HHHTTCTT------GGGEEEEEECSSTTTCCEEE-----
T ss_pred cHHHHHHHHHHHHHHHh-----hhcceeehhhhhccch---hhhhhccC------CCcEEEecCCCCccccchHH-----
Confidence 9988865 444444443 3334443 44444444 44444332 23334466666553332111
Q ss_pred eEEEe--ccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 022237 134 LTFMV--GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 211 (300)
Q Consensus 134 ~~~~~--~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~ 211 (300)
++. ..+++.++.+..+++.+|++++.+-.--.+.....+.- ..+.|++.+.++.+.+++++..++..+.
T Consensus 158 --iv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~-------~~~~EA~~lv~eGvas~edID~~~~~g~ 228 (319)
T 3ado_A 158 --LVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQY-------AIISEAWRLVEEGIVSPSDLDLVMSDGL 228 (319)
T ss_dssp --EEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHH-------HHHHHHHHHHHTTSSCHHHHHHHHHTTH
T ss_pred --hcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHH-------HHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 112 23789999999999999998875532234444443333 5569999999999999999999998776
Q ss_pred CCcc
Q 022237 212 ARCW 215 (300)
Q Consensus 212 ~~s~ 215 (300)
+..|
T Consensus 229 g~~~ 232 (319)
T 3ado_A 229 GMRY 232 (319)
T ss_dssp HHHH
T ss_pred CCCC
Confidence 5444
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=103.89 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=98.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++||+.|.++||+|++||+. ++ ++++| |+|||++ ++.+++.++... .++++
T Consensus 17 ~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl~~l~~~-----l~~g~ 69 (232)
T 3dfu_A 17 STVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYVEKLSAF-----ARRGQ 69 (232)
T ss_dssp CCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHHHHHHTT-----CCTTC
T ss_pred HHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHHHHHHHh-----cCCCC
Confidence 8999999999999999999983 22 57899 9999998 888888654332 34568
Q ss_pred EEEEcCCCCHHH-HHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCC
Q 022237 81 LLIDSSTIDPQT-SRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 158 (300)
Q Consensus 81 ivid~st~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~ 158 (300)
+|+|+|+..+.. ..... . . +.+|+ .+|+++.+ .++.+++++.++.++++++.+|.+
T Consensus 70 ivvd~sgs~~~~vl~~~~----~------~----g~~fvg~HPm~g~~--------~~i~a~d~~a~~~l~~L~~~lG~~ 127 (232)
T 3dfu_A 70 MFLHTSLTHGITVMDPLE----T------S----GGIVMSAHPIGQDR--------WVASALDELGETIVGLLVGELGGS 127 (232)
T ss_dssp EEEECCSSCCGGGGHHHH----H------T----TCEEEEEEEEETTE--------EEEEESSHHHHHHHHHHHHHTTCE
T ss_pred EEEEECCcCHHHHHHHHH----h------C----CCcEEEeeeCCCCc--------eeeeCCCHHHHHHHHHHHHHhCCE
Confidence 999987654432 22221 1 1 25666 47987642 555667888999999999999999
Q ss_pred eEeeCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 159 TIYCGGAGNGAAA--KICNNLTMAVSMLGVSEALTLGQS 195 (300)
Q Consensus 159 ~~~~g~~g~a~~~--k~~~n~~~~~~~~~~~Ea~~l~~~ 195 (300)
++++++-...... -...|.+. ..+.++..+.++
T Consensus 128 vv~~~~~~hd~~~AAvsh~nhLv----~L~~~A~~ll~~ 162 (232)
T 3dfu_A 128 IVEIADDKRAQLAAALTYAGFLS----TLQRDASYFLDE 162 (232)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred EEEeCHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 9999874433221 11245554 556666666643
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-11 Score=106.47 Aligned_cols=181 Identities=14% Similarity=0.094 Sum_probs=112.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc-CCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-GPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~-~~~~~l~~~~~~~ 78 (300)
||+++|+.|.++|++|++|||++++ .+.+.+.|+... ++.++++++|+||+|||.. ...+++. ++.+.+ ++
T Consensus 27 mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~-~~~~v~~~~i~~~l-----~~ 99 (338)
T 1np3_A 27 QGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDE-FQGRLYKEEIEPNL-----KK 99 (338)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHH-HHHHHHHHHTGGGC-----CT
T ss_pred HHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcH-HHHHHHHHHHHhhC-----CC
Confidence 7999999999999999999999876 566666787655 8889999999999999987 5677876 543333 34
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHh------hhcCceEEEe---ccCHHHHHHH
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLA------AEAGTLTFMV---GGSEDAYQAA 148 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~------~~~g~~~~~~---~g~~~~~~~~ 148 (300)
+++|+|++++.. .+.+... ..+..++ .+| .+.... ...|...+++ ..+++..+.+
T Consensus 100 ~~ivi~~~gv~~----~~~~~~~----------~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~ 164 (338)
T 1np3_A 100 GATLAFAHGFSI----HYNQVVP----------RADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVA 164 (338)
T ss_dssp TCEEEESCCHHH----HTTSSCC----------CTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHH
T ss_pred CCEEEEcCCchh----HHHhhcC----------CCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHH
Confidence 579998865322 1111110 0123344 356 222211 1125544433 2357788999
Q ss_pred HHHHHhcCC-C--eEeeCCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022237 149 KPLFLSMGK-N--TIYCGGAGNGAAAKICNN-LTMAVSMLGVSEALTLGQSLGISASTL 203 (300)
Q Consensus 149 ~~ll~~lg~-~--~~~~g~~g~a~~~k~~~n-~~~~~~~~~~~Ea~~l~~~~Gi~~~~~ 203 (300)
.++++.+|. + ++.+...........+.+ .+.......+..++....+.|++++..
T Consensus 165 ~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 165 LSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 999999998 4 666653233333344433 122222233334444456789998765
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-10 Score=98.96 Aligned_cols=246 Identities=11% Similarity=0.081 Sum_probs=142.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC---CCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP---TKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~---~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||+.+|..|.++|++|++|+|+++.++.....|.. ...++.+.+ ..+|+||+|||.. ++++++..+.+.+.
T Consensus 13 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~~l~~~l~---- 87 (294)
T 3g17_A 13 VGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIPHLTYLAH---- 87 (294)
T ss_dssp HHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGGGHHHHEE----
T ss_pred HHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHHHHHHhhC----
Confidence 79999999999999999999998765433223421 112344554 7899999999886 88888876555443
Q ss_pred CCCeEEEEcCC-CCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhc
Q 022237 77 VRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM 155 (300)
Q Consensus 77 ~~~~ivid~st-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~l 155 (300)
++++||-+.+ ....+. +... ....++.+..+-..+ |.....+...+.. ++.+..+.+.++|+.-
T Consensus 88 -~~~~iv~~~nGi~~~~~------~~~~------~v~~g~~~~~a~~~~-pg~v~~~~~~~~~-~~~~~~~~l~~~l~~~ 152 (294)
T 3g17_A 88 -EDTLIILAQNGYGQLEH------IPFK------NVCQAVVYISGQKKG-DVVTHFRDYQLRI-QDNALTRQFRDLVQDS 152 (294)
T ss_dssp -EEEEEEECCSSCCCGGG------CCCS------CEEECEEEEEEEEET-TEEEEEEEEEEEE-ECSHHHHHHHHHTTTS
T ss_pred -CCCEEEEeccCcccHhh------CCCC------cEEEEEEEEEEEEcC-CCEEEECCCEEec-CccHHHHHHHHHHHhC
Confidence 2356665444 333221 2210 000012222221111 1111111112222 4555667888888887
Q ss_pred CCCeEeeCCccHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHhcCCC
Q 022237 156 GKNTIYCGGAGNGAAAKICNNLT--------------------MAVSMLGVSEALTLGQSLGIS--ASTLTKILNSSSAR 213 (300)
Q Consensus 156 g~~~~~~g~~g~a~~~k~~~n~~--------------------~~~~~~~~~Ea~~l~~~~Gi~--~~~~~~~~~~~~~~ 213 (300)
+.++....++-...--|++-|.. ......++.|+.+++++.|++ .+.+.+.+..-...
T Consensus 153 ~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~ 232 (294)
T 3g17_A 153 QIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQGY 232 (294)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTS
T ss_pred CCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Confidence 87776666777777777776662 222567889999999999965 44444443321100
Q ss_pred ccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 214 CWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 214 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
+ ..+ .+.+.++ +..+.... ++. =...+++.++++|+++|..+.++++++...+
T Consensus 233 ~--~~~---~sSM~qD-~~~gr~tE---id~---i~G~vv~~a~~~gv~~P~~~~l~~ll~~~e~ 285 (294)
T 3g17_A 233 P--DEM---GTSMYYD-IVHQQPLE---VEA---IQGFIYRRAREHNLDTPYLDTIYSFLRAYQQ 285 (294)
T ss_dssp C--TTC---CCHHHHH-HHTTCCCS---GGG---THHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred C--CCC---CCcHHHH-HHcCCCcc---HHH---hhhHHHHHHHHhCCCCChHHHHHHHHHHHHh
Confidence 0 000 1112211 11111111 111 1578999999999999999999998876655
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.9e-12 Score=111.49 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=88.7
Q ss_pred ChHHHHHHHHhC-CC-eEEEEcCChhhHHHHHhC-C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSDM-G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~-G~-~V~~~dr~~~~~~~~~~~-g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||.+++++|.+. |+ +|.+|||++++++++.+. + +..+.+++++++++|+|++|+|.. +.++.. ..
T Consensus 146 ~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v~~~--~~----- 215 (312)
T 2i99_A 146 QAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPILFG--EW----- 215 (312)
T ss_dssp HHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCCBCG--GG-----
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---CcccCH--HH-----
Confidence 688999999886 76 899999999999988765 5 566789999999999999999853 344432 12
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE----ecc-CCCh---HhhhcCceEEEeccCHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD----APV-SGGV---LAAEAGTLTFMVGGSEDAYQA 147 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~pv-~g~~---~~~~~g~~~~~~~g~~~~~~~ 147 (300)
.++|++|+++++..|.. +++.+.+.+. + ..|+| +|+ .|.. .....+++..+++|+.+..+.
T Consensus 216 l~~g~~vi~~g~~~p~~-~el~~~~~~~------g----~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~~~~~ 284 (312)
T 2i99_A 216 VKPGAHINAVGASRPDW-RELDDELMKE------A----VLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCE 284 (312)
T ss_dssp SCTTCEEEECCCCSTTC-CSBCHHHHHH------S----EEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSCCCTT
T ss_pred cCCCcEEEeCCCCCCCc-eeccHHHHhc------C----EEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCCCCCC
Confidence 34568999999988864 5665555432 2 68898 555 3332 223345666677776553333
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-08 Score=89.72 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=60.1
Q ss_pred ChHHHHHHHHh-CCCeEEEEc---CChhhHHHHHhC-C---------C---------C-CCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMK-AGYKMAVHD---VNCNVMKMFSDM-G---------V---------P-TKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~-~G~~V~~~d---r~~~~~~~~~~~-g---------~---------~-~~~~~~e~~~~adiVii~vp~ 56 (300)
||+++|..|++ +||+|++|+ |++++++.+.+. | . . .+.+++++++++|+||+|||.
T Consensus 13 ~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~Vilav~~ 92 (404)
T 3c7a_A 13 GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVILTVPA 92 (404)
T ss_dssp HHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTTCSEEEECSCG
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCCCCEEEEeCch
Confidence 79999999998 599999999 888888874332 2 1 1 345788889999999999998
Q ss_pred hhhhhhhhcCCCCcccCCCCCCCeEEEEc
Q 022237 57 SSHVLDVYNGPNGLLQGGNSVRPQLLIDS 85 (300)
Q Consensus 57 ~~~~~~v~~~~~~~l~~~~~~~~~ivid~ 85 (300)
. ..++++.++...+ .++++|+..
T Consensus 93 ~-~~~~v~~~l~~~l-----~~~~ivv~~ 115 (404)
T 3c7a_A 93 F-AHEGYFQAMAPYV-----QDSALIVGL 115 (404)
T ss_dssp G-GHHHHHHHHTTTC-----CTTCEEEET
T ss_pred H-HHHHHHHHHHhhC-----CCCcEEEEc
Confidence 7 6788886654444 334777764
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-09 Score=104.35 Aligned_cols=177 Identities=12% Similarity=0.161 Sum_probs=113.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---------------C-------CCCCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---------------G-------VPTKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~---------------g-------~~~~~~~~e~~~~adiVii~vp~~~ 58 (300)
||..||..++.+|++|+++|++++.++...+. . .....+ .+.+++||+||-+||.+.
T Consensus 327 MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aDlVIEAV~E~l 405 (742)
T 3zwc_A 327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSS-TKELSTVDLVVEAVFEDM 405 (742)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESC-GGGGGSCSEEEECCCSCH
T ss_pred HHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCc-HHHHhhCCEEEEeccccH
Confidence 89999999999999999999999876543221 0 122333 345789999999999998
Q ss_pred hhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEE
Q 022237 59 HVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 136 (300)
Q Consensus 59 ~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~ 136 (300)
+++. ++.+++.+. +++.|+- ++|+.+.. ++++.+.+ +.++.+.||+.+|-.-.... +
T Consensus 406 ~iK~~vf~~le~~~-----~~~aIlASNTSsl~i~---~ia~~~~~------p~r~ig~HFfnP~~~m~LVE-------v 464 (742)
T 3zwc_A 406 NLKKKVFAELSALC-----KPGAFLCTNTSALNVD---DIASSTDR------PQLVIGTHFFSPAHVMRLLE-------V 464 (742)
T ss_dssp HHHHHHHHHHHHHS-----CTTCEEEECCSSSCHH---HHHTTSSC------GGGEEEEECCSSTTTCCEEE-------E
T ss_pred HHHHHHHHHHhhcC-----CCCceEEecCCcCChH---HHHhhcCC------ccccccccccCCCCCCceEE-------E
Confidence 8875 444444443 3334444 44444444 44444332 33334456665442222111 1
Q ss_pred Ee--ccCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 022237 137 MV--GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 208 (300)
Q Consensus 137 ~~--~g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 208 (300)
+. ..+++.++.+..+.+.+|+.++.+.+ ..+.....+.. ..+.|++.+.++ |.+++++.+++.
T Consensus 465 i~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd-~pGFi~NRi~~-------~~~~ea~~l~~e-G~~~~~id~a~~ 529 (742)
T 3zwc_A 465 IPSRYSSPTTIATVMSLSKKIGKIGVVVGN-CYGFVGNRMLA-------PYYNQGFFLLEE-GSKPEDVDGVLE 529 (742)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCEEEECCC-STTTTHHHHHH-------HHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCcccCC-CCCccHHHHhh-------HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 22 23789999999999999999998876 34455544433 445888888776 678877777664
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.3e-09 Score=90.66 Aligned_cols=240 Identities=10% Similarity=-0.005 Sum_probs=131.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCC----------HHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKET----------PFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~----------~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||+.++..|+ +|++|++|+|++++++.+.+.|.....+ ..+....+|+||+|||.. ++++++..+..+
T Consensus 13 ~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~~~~l~~l~~~ 90 (307)
T 3ego_A 13 VGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QLQSVFSSLERI 90 (307)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GHHHHHHHTTSS
T ss_pred HHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HHHHHHHHhhcC
Confidence 7999999999 9999999999999998888776533211 124467899999999876 788888654432
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEec------cCCC--hHhhhcCceEEEecc--
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP------VSGG--VLAAEAGTLTFMVGG-- 140 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------v~g~--~~~~~~g~~~~~~~g-- 140 (300)
.+++ ||-+.+.-... +.+.+.+.. -+++.+- ..++ ......|. +.+|.
T Consensus 91 ------~~~~-ivs~~nGi~~~-e~l~~~~~~------------~~vl~g~~~~~a~~~~pg~v~~~~~g~--~~iG~~~ 148 (307)
T 3ego_A 91 ------GKTN-ILFLQNGMGHI-HDLKDWHVG------------HSIYVGIVEHGAVRKSDTAVDHTGLGA--IKWSAFD 148 (307)
T ss_dssp ------CCCE-EEECCSSSHHH-HHHHTCCCS------------CEEEEEEECCEEEECSSSEEEEEECCC--EEEEECT
T ss_pred ------CCCe-EEEecCCccHH-HHHHHhCCC------------CcEEEEEEeeceEECCCCEEEEeeeee--EEEEeCC
Confidence 2335 55444433221 223332221 1222221 1111 11112233 22332
Q ss_pred -CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCC
Q 022237 141 -SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLGQSLGI 198 (300)
Q Consensus 141 -~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~---------------------~~~~~~~Ea~~l~~~~Gi 198 (300)
..+.++.+.++|..-+..+....++-...--|++.|.... ....++.|+..+++..
T Consensus 149 ~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~-- 226 (307)
T 3ego_A 149 DAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLE-- 226 (307)
T ss_dssp TCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCS--
T ss_pred CCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhcc--
Confidence 2233334444444445555555567777788887776332 2345777887777654
Q ss_pred CHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 022237 199 SASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 278 (300)
Q Consensus 199 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~ 278 (300)
+++.+.+-+....... ....+.+.+ |+..+-.. +...=...+++.++++|+++|..+.++++++...+
T Consensus 227 ~~~~~~~~~~~~~~~~-----~~~~sSM~q------D~~~gr~t-Eid~i~G~vv~~a~~~gv~tP~~~~l~~li~~~e~ 294 (307)
T 3ego_A 227 NEEKAWERVQAVCGQT-----KENRSSMLV------DVIGGRQT-EADAIIGYLLKEASLQGLDAVHLEFLYGSIKALER 294 (307)
T ss_dssp CHHHHHHHHHHHHHHT-----TTCCCHHHH------HHHHTCCC-SHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC-
T ss_pred ChHHHHHHHHHHHHhc-----CCCCchHHH------HHHcCCcc-cHHHhhhHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Confidence 3444444332110000 000111221 11111110 11111478899999999999999999998876544
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=89.23 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=75.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++++.+. .....++++++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 133 IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--~~l~~--mk~ga 203 (290)
T 3gvx_A 133 IGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMVNS--RLLAN--ARKNL 203 (290)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTT--CCTTC
T ss_pred hhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhhhH--HHHhh--hhcCc
Confidence 7999999999999999999999875433 334568999999999999999987677777642 23433 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+...+.+.+.+.+
T Consensus 204 ilIN~aRG~~vd~~aL~~aL~~ 225 (290)
T 3gvx_A 204 TIVNVARADVVSKPDMIGFLKE 225 (290)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred eEEEeehhcccCCcchhhhhhh
Confidence 9999999999888899888875
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-08 Score=90.07 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=77.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++++.+.+.+.|+... ++.++++++|+|++++|.+...+.++.. ..++. .+++.
T Consensus 166 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~--~~~~~--mk~ga 240 (330)
T 2gcg_A 166 IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNK--DFFQK--MKETA 240 (330)
T ss_dssp HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHHH--SCTTC
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCH--HHHhc--CCCCc
Confidence 7999999999999999999999877766666676655 8899999999999999988676766641 22332 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+.+...+.+.+.+
T Consensus 241 ilIn~srg~~v~~~aL~~aL~~ 262 (330)
T 2gcg_A 241 VFINISRGDVVNQDDLYQALAS 262 (330)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCCcccCHHHHHHHHHc
Confidence 9999999988877888887764
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=85.80 Aligned_cols=188 Identities=14% Similarity=0.058 Sum_probs=109.0
Q ss_pred ChHHHHHHHHhC------CCeEEEEcCC-hhhHHHHHhCCCCC----CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKA------GYKMAVHDVN-CNVMKMFSDMGVPT----KETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||.++|++|.++ |++|++++++ +...+...+.|+.. ..++.|+++++|+||+++|+. ...+++.+
T Consensus 65 MG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~-~~~eVl~e--- 140 (525)
T 3fr7_A 65 QGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDA-AQADNYEK--- 140 (525)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHH-HHHHHHHH---
T ss_pred HHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChH-HHHHHHHH---
Confidence 799999999999 9999877665 44556666778775 268999999999999999997 44567753
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCce-EEEeccCCChH-h--h--h-----cCceEEEe
Q 022237 70 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGVL-A--A--E-----AGTLTFMV 138 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pv~g~~~-~--~--~-----~g~~~~~~ 138 (300)
+.+. .++|++|+.+.+.... .+.+... ....++. +..+|-.-+.. . . . .|...+++
T Consensus 141 I~p~--LK~GaILs~AaGf~I~---~le~~~i--------~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liA 207 (525)
T 3fr7_A 141 IFSH--MKPNSILGLSHGFLLG---HLQSAGL--------DFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 207 (525)
T ss_dssp HHHH--SCTTCEEEESSSHHHH---HHHHTTC--------CCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEE
T ss_pred HHHh--cCCCCeEEEeCCCCHH---HHhhhcc--------cCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEEEE
Confidence 3332 3456788777663322 2221000 0001233 33456443332 0 1 1 34432333
Q ss_pred -cc--CHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 022237 139 -GG--SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKI------CNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 209 (300)
Q Consensus 139 -~g--~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~------~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 209 (300)
.. +.+.++.+..++..+|...+.-...-.-.-..+ +.+..-+ ++.++.| .+.+.|++++.++.....
T Consensus 208 v~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pA-lieA~~d---~lVe~G~~pe~Ay~~~~q 283 (525)
T 3fr7_A 208 VHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVEALFR---RYTEQGMDEEMAYKNTVE 283 (525)
T ss_dssp EEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHH-HHHHHHH---HHHHTTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHH-HHHHHHH---HHHHcCCCHHHHHHHHHH
Confidence 33 347889999999999986421112110000001 1121111 2244444 477889999988776543
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-08 Score=89.60 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=78.9
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+++|+.|. ..|++|++|||++++.+...+.|+....++.++++++|+|++++|...+.+.++.. ..++. .+++
T Consensus 174 IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~--~~l~~--mk~g 249 (348)
T 2w2k_A 174 IQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE--AFFAA--MKPG 249 (348)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCH--HHHHH--SCTT
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhH--HHHhc--CCCC
Confidence 7999999999 99999999999987766655557666668899999999999999998777777642 23332 3566
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++||+|+..+...+.+.+.+.+
T Consensus 250 ailin~srg~~vd~~aL~~aL~~ 272 (348)
T 2w2k_A 250 SRIVNTARGPVISQDALIAALKS 272 (348)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHT
T ss_pred CEEEECCCCchhCHHHHHHHHHh
Confidence 89999999988888888888764
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-08 Score=89.51 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=81.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|++|++|||++...+.+.+.|+....++++++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 175 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~--mk~ga 250 (351)
T 3jtm_A 175 IGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNK--ELIGK--LKKGV 250 (351)
T ss_dssp HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHHH--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcH--HHHhc--CCCCC
Confidence 699999999999999999999987766666668777789999999999999999987677777642 24443 36679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+.....+.+.+.+
T Consensus 251 ilIN~aRG~~vde~aL~~aL~~ 272 (351)
T 3jtm_A 251 LIVNNARGAIMERQAVVDAVES 272 (351)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECcCchhhCHHHHHHHHHh
Confidence 9999999998888888888875
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-09 Score=90.42 Aligned_cols=150 Identities=18% Similarity=0.083 Sum_probs=98.5
Q ss_pred ChHHHHHHHHhCCCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V-~~~dr~~~~~~~~~~~g~~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||..+++.|.+.|++| .+||+++ +.+. .+.++++++ .++|+|++|+|++ ...+++.. .+ ..
T Consensus 11 mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~-~~~~~~~~---~l-----~~ 73 (236)
T 2dc1_A 11 IGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQ-AVKDYAEK---IL-----KA 73 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHH-HHHHHHHH---HH-----HT
T ss_pred HHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHH-HHHHHHHH---HH-----HC
Confidence 7899999999999997 6999985 3221 567889988 6999999999988 44444421 23 23
Q ss_pred CeEEEEcCCCCHHH---HHHHHHHHhhhhhhhccCCCCCce-EEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHh
Q 022237 79 PQLLIDSSTIDPQT---SRNISAAVSNCILKEKKDSWENPV-MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS 154 (300)
Q Consensus 79 ~~ivid~st~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 154 (300)
|+.|++.++..+.. .+++.+..++. | .. ++++|+.++......+.+ +++...++..++.++.
T Consensus 74 G~~vv~~~~~~~~~~~~~~~l~~~a~~~------g----~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~ 139 (236)
T 2dc1_A 74 GIDLIVLSTGAFADRDFLSRVREVCRKT------G----RRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQF 139 (236)
T ss_dssp TCEEEESCGGGGGSHHHHHHHHHHHHHH------C----CCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGGT
T ss_pred CCcEEEECcccCChHHHHHHHHHHHHhc------C----CeEEecCccccChHHHHHhhc----cccEEEEEEEcChHHc
Confidence 46888888766432 26776666542 2 33 788999998876666653 3322222333333555
Q ss_pred cCCCeEeeCCccHH-HHHHHHHHHHHHH
Q 022237 155 MGKNTIYCGGAGNG-AAAKICNNLTMAV 181 (300)
Q Consensus 155 lg~~~~~~g~~g~a-~~~k~~~n~~~~~ 181 (300)
++.++++.|+.+.+ ..+|...|.....
T Consensus 140 ~~~~~~~~G~~~~~~~~~~~~~n~~~~~ 167 (236)
T 2dc1_A 140 GRKGVIFEGSASEAAQKFPKNLNVAATL 167 (236)
T ss_dssp TSCEEEEEEEHHHHHHHSTTCCHHHHHH
T ss_pred CcceEEEeccHHHHHHHCCchHHHHHHH
Confidence 67777888875444 4667776766533
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.7e-08 Score=88.16 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=79.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.+...|++|++|||++. .+...+.|+....+++++++++|+|++++|...+.+.++.. ..++. .+++.
T Consensus 171 IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~--~~l~~--mk~ga 245 (352)
T 3gg9_A 171 IGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITV--ADLTR--MKPTA 245 (352)
T ss_dssp HHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTT--SCTTC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCH--HHHhh--CCCCc
Confidence 699999999999999999999964 35556678877779999999999999999987777776642 24443 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+...+.+.+.+.+
T Consensus 246 ilIN~aRg~~vd~~aL~~aL~~ 267 (352)
T 3gg9_A 246 LFVNTSRAELVEENGMVTALNR 267 (352)
T ss_dssp EEEECSCGGGBCTTHHHHHHHH
T ss_pred EEEECCCchhhcHHHHHHHHHh
Confidence 9999999888888888888875
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-08 Score=86.20 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=76.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+++|+.|...|++|++||| ++++. ...+.|+....+++++++++|+|++++|...+.+.++.+ ..++. .+++
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~--~~l~~--mk~g 231 (320)
T 1gdh_A 157 IGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK--ATIKS--LPQG 231 (320)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTT--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCH--HHHhh--CCCC
Confidence 799999999999999999999 88763 444457766568999999999999999987677776642 23333 3567
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++||+++..+.....+.+.+.+
T Consensus 232 ailIn~arg~~vd~~aL~~aL~~ 254 (320)
T 1gdh_A 232 AIVVNTARGDLVDNELVVAALEA 254 (320)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred cEEEECCCCcccCHHHHHHHHHh
Confidence 89999999877777777777764
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.4e-08 Score=87.00 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=77.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|++|++||+++++.. ....|+....+++++++++|+|++++|...+.+.++.+ ..++. .+++.
T Consensus 179 IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~--mk~ga 253 (347)
T 1mx3_A 179 VGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND--FTVKQ--MRQGA 253 (347)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH--HHHTT--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchhh-HhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHH--HHHhc--CCCCC
Confidence 799999999999999999999876422 23346665668999999999999999988777777642 23433 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+++..+...+.+.+.+.+
T Consensus 254 ilIN~arg~~vd~~aL~~aL~~ 275 (347)
T 1mx3_A 254 FLVNTARGGLVDEKALAQALKE 275 (347)
T ss_dssp EEEECSCTTSBCHHHHHHHHHH
T ss_pred EEEECCCChHHhHHHHHHHHHh
Confidence 9999999999888888888875
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5e-08 Score=86.93 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=75.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|+.|...|++|++|||++++ +...+.|+.. .++.++++++|+|++++|.+.+++.++.. ..++. .+++.
T Consensus 161 iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~--~~~~~--mk~~a 234 (334)
T 2dbq_A 161 IGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINE--ERLKL--MKKTA 234 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHHH--SCTTC
T ss_pred HHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCH--HHHhc--CCCCc
Confidence 7999999999999999999999887 5444556654 48899999999999999998767766641 22322 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+.....+.+.+.+
T Consensus 235 ilIn~srg~~v~~~aL~~aL~~ 256 (334)
T 2dbq_A 235 ILINIARGKVVDTNALVKALKE 256 (334)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCCcccCHHHHHHHHHh
Confidence 9999999888887788777764
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.8e-08 Score=85.86 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=76.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++.....+. +.....++++++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 151 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~--mk~ga 224 (324)
T 3hg7_A 151 IGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPATRETHHLFTA--SRFEH--CKPGA 224 (324)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCT--TTTTC--SCTTC
T ss_pred HHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHH--HHHhc--CCCCc
Confidence 799999999999999999999985443321 1223468999999999999999987787777753 34443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|...+...+.+.+.+.+
T Consensus 225 ilIN~aRG~~vde~aL~~aL~~ 246 (324)
T 3hg7_A 225 ILFNVGRGNAINEGDLLTALRT 246 (324)
T ss_dssp EEEECSCGGGBCHHHHHHHHHT
T ss_pred EEEECCCchhhCHHHHHHHHHc
Confidence 9999999999888888888875
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=84.55 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=76.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.+...|++|++|||++++ ....+.|+.. .+++++++++|+|++++|...+.+.++.. ..++. .+++.
T Consensus 176 IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~--mk~ga 249 (335)
T 2g76_A 176 IGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLND--NTFAQ--CKKGV 249 (335)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCH--HHHTT--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhCH--HHHhh--CCCCc
Confidence 6999999999999999999999776 3455567654 48999999999999999998777777642 23433 45679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+.....+.+.+.+
T Consensus 250 ilIN~arg~vvd~~aL~~aL~~ 271 (335)
T 2g76_A 250 RVVNCARGGIVDEGALLRALQS 271 (335)
T ss_dssp EEEECSCTTSBCHHHHHHHHHH
T ss_pred EEEECCCccccCHHHHHHHHHh
Confidence 9999999888777788887765
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.9e-08 Score=86.93 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred ChHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||.++|+.|...|++ |++|||++.+.+...+.|+....+++++++++|+|++++|...+.+.++.+ ..++. .+++
T Consensus 175 IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~--mk~g 250 (364)
T 2j6i_A 175 IGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINK--ELLSK--FKKG 250 (364)
T ss_dssp HHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCH--HHHTT--SCTT
T ss_pred HHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCH--HHHhh--CCCC
Confidence 799999999999997 999999987776666677766678999999999999999998777777642 23333 3567
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++||++...+...+.+.+.+.+
T Consensus 251 a~lIn~arG~~vd~~aL~~aL~~ 273 (364)
T 2j6i_A 251 AWLVNTARGAICVAEDVAAALES 273 (364)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHH
T ss_pred CEEEECCCCchhCHHHHHHHHHc
Confidence 89999999888888888888875
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=84.92 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=77.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|++|...|++|++|||++...+... |.....++++++++||+|++++|...+.+.++.+ ..++. .+++.
T Consensus 184 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~--~~l~~--mk~ga 257 (345)
T 4g2n_A 184 IGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDH--DRIAK--IPEGA 257 (345)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCH--HHHHH--SCTTE
T ss_pred hHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCH--HHHhh--CCCCc
Confidence 699999999999999999999975544332 6666679999999999999999987777777642 23433 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.........+.+.+.+
T Consensus 258 ilIN~aRG~~vde~aL~~aL~~ 279 (345)
T 4g2n_A 258 VVINISRGDLINDDALIEALRS 279 (345)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCCchhCHHHHHHHHHh
Confidence 9999999888888888888865
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.55 E-value=7.2e-08 Score=87.39 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=78.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++.+.+...+.|+....+++++++++|+|++++|...+.+.++.+ ..++. .+++.
T Consensus 202 IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~--mk~ga 277 (393)
T 2nac_A 202 IGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND--ETLKL--FKRGA 277 (393)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHTT--SCTTE
T ss_pred HHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhH--HHHhh--CCCCC
Confidence 799999999999999999999976665555567766678999999999999999987677777642 23333 35679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+.....+.+.+.+
T Consensus 278 ilIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 278 YIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp EEEECSCGGGBCHHHHHHHHHT
T ss_pred EEEECCCchHhhHHHHHHHHHc
Confidence 9999999888777788887764
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.55 E-value=8e-08 Score=84.60 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=76.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++++ +...+.|+.. .+++++++++|+|++++|...+.+.++.. ..++. .+++.
T Consensus 153 IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~--mk~ga 226 (307)
T 1wwk_A 153 IGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKF-VDLETLLKESDVVTIHVPLVESTYHLINE--ERLKL--MKKTA 226 (307)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHHH--SCTTC
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCccc-cCHHHHHhhCCEEEEecCCChHHhhhcCH--HHHhc--CCCCe
Confidence 6999999999999999999999887 4555667654 48899999999999999988777776642 23333 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+++..+.....+.+.+.+
T Consensus 227 ~lin~arg~~vd~~aL~~aL~~ 248 (307)
T 1wwk_A 227 ILINTSRGPVVDTNALVKALKE 248 (307)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCCcccCHHHHHHHHHh
Confidence 9999999888777777777764
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.3e-07 Score=86.62 Aligned_cols=96 Identities=10% Similarity=0.164 Sum_probs=76.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|++|.+.|++|++||+++.. +...+.|+... ++++++++||+|++|+|...+.+.++.+ ..++. .+++.
T Consensus 153 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~--~~~~~--~k~g~ 226 (529)
T 1ygy_A 153 IGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDK--EALAK--TKPGV 226 (529)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTT--SCTTE
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCH--HHHhC--CCCCC
Confidence 7999999999999999999998753 34455576654 8999999999999999998777777753 13332 35679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+.....+.+.+.+
T Consensus 227 ilin~arg~iv~~~aL~~al~~ 248 (529)
T 1ygy_A 227 IIVNAARGGLVDEAALADAITG 248 (529)
T ss_dssp EEEECSCTTSBCHHHHHHHHHT
T ss_pred EEEECCCCchhhHHHHHHHHHc
Confidence 9999999888888888787764
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.1e-08 Score=86.64 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=77.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++.+.+...+.|+.. .+++++++++|+|++++|...+.+.++.+ ..++. .+++.
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~--mk~ga 230 (330)
T 4e5n_A 156 IGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ-VACSELFASSDFILLALPLNADTLHLVNA--ELLAL--VRPGA 230 (330)
T ss_dssp HHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTT--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCH--HHHhh--CCCCc
Confidence 799999999999999999999985555555556544 48999999999999999987677766642 24443 46679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+.....+.+.+.+
T Consensus 231 ilIN~arg~~vd~~aL~~aL~~ 252 (330)
T 4e5n_A 231 LLVNPCRGSVVDEAAVLAALER 252 (330)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCCchhCHHHHHHHHHh
Confidence 9999999998888888888865
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.53 E-value=8e-08 Score=84.80 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=76.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++++. ...+.|+.. .+++++++++|+|++++|...+.+.++.+ ..++. .+++.
T Consensus 153 IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~--~~l~~--mk~ga 226 (313)
T 2ekl_A 153 IGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDY--PQFEL--MKDNV 226 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCH--HHHHH--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhCH--HHHhc--CCCCC
Confidence 79999999999999999999998875 355667664 48999999999999999988667666642 23332 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+++..+.....+.+.+.+
T Consensus 227 ~lIn~arg~~vd~~aL~~aL~~ 248 (313)
T 2ekl_A 227 IIVNTSRAVAVNGKALLDYIKK 248 (313)
T ss_dssp EEEESSCGGGBCHHHHHHHHHT
T ss_pred EEEECCCCcccCHHHHHHHHHc
Confidence 9999999888888888888764
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.7e-08 Score=86.94 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=74.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++++.. |.....+++++++++|+|++++|...+.+.++.+ ..++. .+++.
T Consensus 175 iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~--~~l~~--mk~ga 245 (333)
T 3ba1_A 175 IGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHIINR--EVIDA--LGPKG 245 (333)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCH--HHHHH--HCTTC
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHhhH--HHHhc--CCCCC
Confidence 799999999999999999999987542 5555678999999999999999997677777642 23322 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+.....+.+.+.+
T Consensus 246 ilIn~srG~~vd~~aL~~aL~~ 267 (333)
T 3ba1_A 246 VLINIGRGPHVDEPELVSALVE 267 (333)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCCchhCHHHHHHHHHc
Confidence 9999999998888888888765
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=8.6e-08 Score=84.19 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=74.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|++|...|++|++|||+++ +. +.....+++++++++|+|++++|...+.+.++.+ ..++. .+++.
T Consensus 135 IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~--~~l~~--mk~ga 204 (303)
T 1qp8_A 135 IGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVKY--QHLAL--MAEDA 204 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCH--HHHTT--SCTTC
T ss_pred HHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCH--HHHhh--CCCCC
Confidence 799999999999999999999986 21 4445568899999999999999998777777742 24443 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+.....+.+.+.+
T Consensus 205 ilin~srg~~vd~~aL~~aL~~ 226 (303)
T 1qp8_A 205 VFVNVGRAEVLDRDGVLRILKE 226 (303)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCCcccCHHHHHHHHHh
Confidence 9999999888777788887765
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-08 Score=87.22 Aligned_cols=96 Identities=11% Similarity=0.219 Sum_probs=75.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|++|++|||+++..+.+... ....++++++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 148 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~--~~l~~--mk~ga 221 (324)
T 3evt_A 148 IGQSLAAKASALGMHVIGVNTTGHPADHFHET--VAFTATADALATANFIVNALPLTPTTHHLFST--ELFQQ--TKQQP 221 (324)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCCCTTCSEE--EEGGGCHHHHHHCSEEEECCCCCGGGTTCBSH--HHHHT--CCSCC
T ss_pred HHHHHHHHHHhCCCEEEEECCCcchhHhHhhc--cccCCHHHHHhhCCEEEEcCCCchHHHHhcCH--HHHhc--CCCCC
Confidence 79999999999999999999998765433211 22457889999999999999987787777642 34443 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|...+...+.+.+.+.+
T Consensus 222 ilIN~aRG~~vd~~aL~~aL~~ 243 (324)
T 3evt_A 222 MLINIGRGPAVDTTALMTALDH 243 (324)
T ss_dssp EEEECSCGGGBCHHHHHHHHHT
T ss_pred EEEEcCCChhhhHHHHHHHHHh
Confidence 9999999999888888888865
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.7e-08 Score=85.65 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=56.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+++...|++|++|||++++ ..+.....++++++++||+|++++|...+.+.++.+ ..++. .+++.
T Consensus 182 IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~--~~l~~--mk~ga 252 (340)
T 4dgs_A 182 IGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDA--SLLQA--LGPEG 252 (340)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC----------CH--HHHHH--TTTTC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhH--HHHhc--CCCCC
Confidence 7999999999999999999999875 234455678999999999999999977677777642 23433 35668
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+.....+.+.+.+
T Consensus 253 ilIN~aRG~vvde~aL~~aL~~ 274 (340)
T 4dgs_A 253 IVVNVARGNVVDEDALIEALKS 274 (340)
T ss_dssp EEEECSCC--------------
T ss_pred EEEECCCCcccCHHHHHHHHHc
Confidence 9999999999888888888764
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-07 Score=84.62 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=74.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.|...|++|++|||++++ +...+.|+.. .+++++++++|+|++++|...+.+.++.+ ..++. .+++
T Consensus 157 iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~--~~~~~--mk~g- 229 (333)
T 2d0i_A 157 IGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARY-MDIDELLEKSDIVILALPLTRDTYHIINE--ERVKK--LEGK- 229 (333)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCH--HHHHH--TBTC-
T ss_pred HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-cCHHHHHhhCCEEEEcCCCChHHHHHhCH--HHHhh--CCCC-
Confidence 7999999999999999999999886 4444446554 38889999999999999998777777652 12332 3567
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+.....+.+.+.+
T Consensus 230 ilin~srg~~vd~~aL~~aL~~ 251 (333)
T 2d0i_A 230 YLVNIGRGALVDEKAVTEAIKQ 251 (333)
T ss_dssp EEEECSCGGGBCHHHHHHHHHT
T ss_pred EEEECCCCcccCHHHHHHHHHc
Confidence 9999998888777777777764
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-07 Score=82.59 Aligned_cols=96 Identities=20% Similarity=0.151 Sum_probs=75.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+++|+.+...|++|++||+++. .+...+.|+.. .+++++++++|+|++++|...+.+.++.. +.++. .+++.
T Consensus 187 IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~--~~l~~--mk~ga 260 (365)
T 4hy3_A 187 LGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGA--EAFSS--MRRGA 260 (365)
T ss_dssp HHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCCH--HHHHT--SCTTC
T ss_pred ccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCH--HHHhc--CCCCc
Confidence 699999999999999999999863 34455567654 58999999999999999988777777642 34443 46678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+.....+.+.+.+
T Consensus 261 ilIN~aRG~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 261 AFILLSRADVVDFDALMAAVSS 282 (365)
T ss_dssp EEEECSCGGGSCHHHHHHHHHT
T ss_pred EEEECcCCchhCHHHHHHHHHc
Confidence 9999999998888888888875
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-07 Score=82.32 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=74.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.+...|++|++|||+++.. .+.+.. ..++++++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 159 IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~-~~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~--mk~ga 230 (343)
T 2yq5_A 159 IGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLT-YTDFDTVLKEADIVSLHTPLFPSTENMIGE--KQLKE--MKKSA 230 (343)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHHH--SCTTC
T ss_pred HHHHHHHHHhhCCCEEEEECCChhhh---hhcccc-ccCHHHHHhcCCEEEEcCCCCHHHHHHhhH--HHHhh--CCCCc
Confidence 69999999999999999999998651 122333 348999999999999999987777777642 23433 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+...+.+.+.+.+
T Consensus 231 ilIN~aRg~~vd~~aL~~aL~~ 252 (343)
T 2yq5_A 231 YLINCARGELVDTGALIKALQD 252 (343)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCChhhhHHHHHHHHHc
Confidence 9999999999888888888865
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.38 E-value=8.7e-08 Score=84.52 Aligned_cols=96 Identities=15% Similarity=0.217 Sum_probs=74.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.|...|++|++|||+++..+.+... ....++++++++||+|++++|...+.+.++.. ..++. .+++.
T Consensus 150 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~--~~l~~--mk~ga 223 (315)
T 3pp8_A 150 LGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGIINS--ELLDQ--LPDGA 223 (315)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSH--HHHTT--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhccH--HHHhh--CCCCC
Confidence 69999999999999999999998754332211 11257889999999999999987787777742 24443 46679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++.......+.+.+.+.+
T Consensus 224 ilIN~aRG~~vd~~aL~~aL~~ 245 (315)
T 3pp8_A 224 YVLNLARGVHVQEADLLAALDS 245 (315)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCChhhhHHHHHHHHHh
Confidence 9999999998888888888865
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.9e-07 Score=80.46 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=75.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.+...|++|++|||++++. +.+ .+....+++++++++|+|++++|...+.+.++.+ ..++. .+++.
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~--mk~ga 229 (333)
T 1j4a_A 157 IGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMIND--ESIAK--MKQDV 229 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH--HHHHH--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhH--HHHhh--CCCCc
Confidence 79999999999999999999998765 222 3444458999999999999999988777776642 23332 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||++...+...+.+.+.+.+
T Consensus 230 ~lIn~arg~~vd~~aL~~aL~~ 251 (333)
T 1j4a_A 230 VIVNVSRGPLVDTDAVIRGLDS 251 (333)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCCcccCHHHHHHHHHh
Confidence 9999999888888888888875
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-07 Score=80.82 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=71.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|++|...|++|++|||++++.. + ...+++++++++|+|++++|...+.+.++.+ ..++. .+++.
T Consensus 155 IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~--mk~ga 223 (311)
T 2cuk_A 155 IGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNR--ERLFA--MKRGA 223 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHTT--SCTTC
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCH--HHHhh--CCCCc
Confidence 799999999999999999999987653 2 2468899999999999999998777777642 23333 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHh
Q 022237 81 LLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~ 101 (300)
++||+|+..+.....+.+.+.
T Consensus 224 ~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 224 ILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp EEEECSCGGGBCHHHHHHHHT
T ss_pred EEEECCCCCccCHHHHHHHHh
Confidence 999999988777777777665
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.7e-07 Score=82.14 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=73.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhh----hhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----VLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~----~~~v~~~~~~~l~~~~~ 76 (300)
||+.+|++|...|++|++||++++... ......++++++++||+|++++|...+ .+.++.. ..++. .
T Consensus 130 IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~--~~l~~--m 200 (381)
T 3oet_A 130 VGSRLQTRLEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADE--TLIRR--L 200 (381)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCH--HHHHH--S
T ss_pred HHHHHHHHHHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCH--HHHhc--C
Confidence 799999999999999999998654321 233457899999999999999998766 6666642 34443 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|.++||+|...+...+.+.+.+.+
T Consensus 201 k~gailIN~aRG~vvde~aL~~aL~~ 226 (381)
T 3oet_A 201 KPGAILINACRGPVVDNAALLARLNA 226 (381)
T ss_dssp CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 67799999999999888888888875
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-07 Score=82.55 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=71.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.+...|++|++||+++... ..+.....++++++++||+|++++|...+.+.++.+ ..++. .++|.
T Consensus 167 IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~--~~l~~--mk~ga 238 (416)
T 3k5p_A 167 IGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITE--AKLRK--MKKGA 238 (416)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----CCBCH--HHHHH--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCH--HHHhh--CCCCc
Confidence 69999999999999999999985422 123445678999999999999999998777777642 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|...+...+.+.+.+.+
T Consensus 239 ilIN~aRG~vvd~~aL~~aL~~ 260 (416)
T 3k5p_A 239 FLINNARGSDVDLEALAKVLQE 260 (416)
T ss_dssp EEEECSCTTSBCHHHHHHHHHT
T ss_pred EEEECCCChhhhHHHHHHHHHc
Confidence 9999999999888888888865
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.2e-07 Score=82.83 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=75.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+++...|++|++|||++... ..++....++++++++||+|++++|...+.+.++.+ +.++. .++|.
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~--mk~ga 227 (404)
T 1sc6_A 156 IGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA--KEISL--MKPGS 227 (404)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCH--HHHHH--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhH--HHHhh--cCCCe
Confidence 79999999999999999999986532 113445568999999999999999998788777742 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+.....+.+.+.+
T Consensus 228 ~lIN~aRg~~vd~~aL~~aL~~ 249 (404)
T 1sc6_A 228 LLINASRGTVVDIPALADALAS 249 (404)
T ss_dssp EEEECSCSSSBCHHHHHHHHHT
T ss_pred EEEECCCChHHhHHHHHHHHHc
Confidence 9999999998888888888765
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-07 Score=70.16 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=67.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..++++|.+.||+|+.+|++.+.+ .|...+.|+.|+.+.+|++++++|. ..+.+++.+ ..+. ..+.
T Consensus 29 ~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~-~~v~~v~~~---~~~~---g~~~ 96 (138)
T 1y81_A 29 YGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAKE---AVEA---GFKK 96 (138)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHHH---HHHT---TCCE
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCH-HHHHHHHHH---HHHc---CCCE
Confidence 68999999999999977777664332 4778888999998899999999995 588888754 2321 1236
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (300)
+|+++++. .+++.+.+++. |+++++
T Consensus 97 i~~~~~~~----~~~l~~~a~~~----------Gi~~ig 121 (138)
T 1y81_A 97 LWFQPGAE----SEEIRRFLEKA----------GVEYSF 121 (138)
T ss_dssp EEECTTSC----CHHHHHHHHHH----------TCEEEC
T ss_pred EEEcCccH----HHHHHHHHHHC----------CCEEEc
Confidence 88888775 35555555542 267776
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=9.9e-07 Score=78.46 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=74.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||+.+|+.+...|++|++|||++++. + +..+. ..+++++++++|+|++++|...+.+.++.. ..++. .+++.
T Consensus 156 IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~~--~~l~~--mk~ga 227 (333)
T 1dxy_A 156 IGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINE--AAFNL--MKPGA 227 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCH--HHHHH--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhCH--HHHhh--CCCCc
Confidence 69999999999999999999988654 1 22222 348899999999999999998777777642 23433 35678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|+..+...+.+.+.+.+
T Consensus 228 ~lIn~srg~~vd~~aL~~aL~~ 249 (333)
T 1dxy_A 228 IVINTARPNLIDTQAMLSNLKS 249 (333)
T ss_dssp EEEECSCTTSBCHHHHHHHHHT
T ss_pred EEEECCCCcccCHHHHHHHHHh
Confidence 9999999998888888888875
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-06 Score=79.36 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=73.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhh----hhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----VLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~----~~~v~~~~~~~l~~~~~ 76 (300)
||+.+|+.|...|++|++||++++.. ..+. ...++++++++||+|++++|...+ .+.++. +..++. .
T Consensus 127 IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~--~~~l~~--m 197 (380)
T 2o4c_A 127 VGGRLVEVLRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLD--EPRLAA--L 197 (380)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC--HHHHHT--S
T ss_pred HHHHHHHHHHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcC--HHHHhh--C
Confidence 69999999999999999999876543 2343 346899999999999999998866 666664 224443 4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
+++.++||+|+..+...+.+.+.+.+
T Consensus 198 k~gailIN~sRG~vvd~~aL~~aL~~ 223 (380)
T 2o4c_A 198 RPGTWLVNASRGAVVDNQALRRLLEG 223 (380)
T ss_dssp CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 66799999999888888888888765
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.7e-07 Score=78.46 Aligned_cols=94 Identities=18% Similarity=0.095 Sum_probs=73.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..+|+.+...|++|++|||++++. + +.+. ...+++++++++|+|++++|...+.+.++.. ..++. .+++.
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~-~~~~l~ell~~aDvV~~~~p~t~~t~~li~~--~~l~~--mk~ga 228 (331)
T 1xdw_A 157 IGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYC-TQVSLDEVLEKSDIITIHAPYIKENGAVVTR--DFLKK--MKDGA 228 (331)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTC-EECCHHHHHHHCSEEEECCCCCTTTCCSBCH--HHHHT--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCCccHH--H-Hhcc-ccCCHHHHHhhCCEEEEecCCchHHHHHhCH--HHHhh--CCCCc
Confidence 69999999999999999999998654 2 2222 2348999999999999999988777766642 23433 45679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++||+|...+.....+.+.+.+
T Consensus 229 ~lin~srg~~vd~~aL~~aL~~ 250 (331)
T 1xdw_A 229 ILVNCARGQLVDTEAVIEAVES 250 (331)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEECCCcccccHHHHHHHHHh
Confidence 9999999888888888888875
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-06 Score=73.04 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=60.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||++++..|.+.|++|++|||++++++++.+. |+....++.+.++++|+||.|+|.+. ..++...+. .+. ..++
T Consensus 140 ~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~-~~~~~~~i~--~~~--l~~g 214 (275)
T 2hk9_A 140 ASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGL-KDEDPEIFN--YDL--IKKD 214 (275)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTS-STTCCCSSC--GGG--CCTT
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCC-CCCCCCCCC--HHH--cCCC
Confidence 68999999999999999999999998888654 55445577888899999999999873 222111111 111 3456
Q ss_pred eEEEEcCC
Q 022237 80 QLLIDSST 87 (300)
Q Consensus 80 ~ivid~st 87 (300)
++|+|+++
T Consensus 215 ~~viDv~~ 222 (275)
T 2hk9_A 215 HVVVDIIY 222 (275)
T ss_dssp SEEEESSS
T ss_pred CEEEEcCC
Confidence 89999988
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.9e-06 Score=72.90 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=60.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||..+++.|...|++|++|||++++.+.+.+.|... ..++.+.++++|+|++++|.. .+.. ..++. .++
T Consensus 168 iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~-~i~~------~~~~~--mk~ 238 (300)
T 2rir_A 168 TGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSM-ILNQ------TVLSS--MTP 238 (300)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSC-CBCH------HHHTT--SCT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChh-hhCH------HHHHh--CCC
Confidence 689999999999999999999999887776666543 257888899999999999974 2211 11222 345
Q ss_pred CeEEEEcCCCCH
Q 022237 79 PQLLIDSSTIDP 90 (300)
Q Consensus 79 ~~ivid~st~~p 90 (300)
+.++||++....
T Consensus 239 g~~lin~a~g~~ 250 (300)
T 2rir_A 239 KTLILDLASRPG 250 (300)
T ss_dssp TCEEEECSSTTC
T ss_pred CCEEEEEeCCCC
Confidence 689999987533
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.6e-06 Score=70.22 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=63.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhh--hhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSH--VLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~--~~~v~~~~~~~l~~~~~~ 77 (300)
||.++++.|.+.|++|++|||++++++.+.+. +.. ..++.++ +++|+||+|+|.+.. +..++. ... .+
T Consensus 127 ~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~--~~~-----l~ 197 (263)
T 2d5c_A 127 AGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPLP--AEL-----FP 197 (263)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC--GGG-----SC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC--HHH-----cC
Confidence 68999999999999999999999988877654 444 4577788 999999999998731 112221 111 24
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
++++|+|+++.... + ++.+.++
T Consensus 198 ~g~~viD~~~~p~~-t-~l~~~a~ 219 (263)
T 2d5c_A 198 EEGAAVDLVYRPLW-T-RFLREAK 219 (263)
T ss_dssp SSSEEEESCCSSSS-C-HHHHHHH
T ss_pred CCCEEEEeecCCcc-c-HHHHHHH
Confidence 56799999876333 3 3545444
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-06 Score=68.72 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=62.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh--hhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~--~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||..++++|.+.||+|+.+|++. +.+ .|...+.|+.|+....|++++|+|.+ .+.+++.+. .+. ..
T Consensus 28 ~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~~-~v~~v~~~~---~~~---g~ 95 (145)
T 2duw_A 28 PSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNSE-AAWGVAQEA---IAI---GA 95 (145)
T ss_dssp HHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCST-HHHHHHHHH---HHH---TC
T ss_pred hHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCHH-HHHHHHHHH---HHc---CC
Confidence 68899999999999977777665 332 47777888888888999999999965 888887542 221 12
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
+.+|+++++. .+++.+.+++
T Consensus 96 ~~i~i~~~~~----~~~l~~~a~~ 115 (145)
T 2duw_A 96 KTLWLQLGVI----NEQAAVLARE 115 (145)
T ss_dssp CEEECCTTCC----CHHHHHHHHT
T ss_pred CEEEEcCChH----HHHHHHHHHH
Confidence 3588887666 4556666554
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.6e-06 Score=64.23 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=57.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCC--CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~--~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||..+++.|.+.|++|++|||++++++.+.+. +.. ...+..++++++|+||.|+|.+.. ++.. ..+ .
T Consensus 32 iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~---~~~~--~~l-----~ 101 (144)
T 3oj0_A 32 LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP---IVEE--RSL-----M 101 (144)
T ss_dssp HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC---SBCG--GGC-----C
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc---EeeH--HHc-----C
Confidence 68889999998999999999999999887554 433 456888999999999999998732 2211 122 3
Q ss_pred CCeEEEEcCC
Q 022237 78 RPQLLIDSST 87 (300)
Q Consensus 78 ~~~ivid~st 87 (300)
++.+++|.+.
T Consensus 102 ~g~~vid~~~ 111 (144)
T 3oj0_A 102 PGKLFIDLGN 111 (144)
T ss_dssp TTCEEEECCS
T ss_pred CCCEEEEccC
Confidence 4578898875
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=72.06 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=67.3
Q ss_pred ChHHHHHHHHh--CCCeEEEEcCChhhHHHHHhC-----C--CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~--~G~~V~~~dr~~~~~~~~~~~-----g--~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||..+++.|.. ...+|.+|||++++++++.+. | +..+.+++++++++|+|++|+|.. ....++.. ..
T Consensus 140 ~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~~~pvl~~--~~- 215 (350)
T 1x7d_A 140 QSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-AYATIITP--DM- 215 (350)
T ss_dssp THHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-SEEEEECG--GG-
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-CCCceecH--HH-
Confidence 68888888764 346899999999999888764 4 345678999999999999999987 33344431 12
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNISAAV 100 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~~~~ 100 (300)
..+|+.|+++++..|. .+++...+
T Consensus 216 ----l~~G~~V~~vgs~~p~-~~El~~~~ 239 (350)
T 1x7d_A 216 ----LEPGMHLNAVGGDCPG-KTELHADV 239 (350)
T ss_dssp ----CCTTCEEEECSCCBTT-BEEECHHH
T ss_pred ----cCCCCEEEECCCCCCC-ceeeCHHH
Confidence 3456899999998887 55555444
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.4e-05 Score=68.33 Aligned_cols=94 Identities=6% Similarity=-0.073 Sum_probs=63.3
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CC---CCC--CCHHHHhhcCCEEEEecCChhhh--hhhhcCCCCcc
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV---PTK--ETPFEVAEASDVVITMLPSSSHV--LDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~---~~~--~~~~e~~~~adiVii~vp~~~~~--~~v~~~~~~~l 71 (300)
||.+++..|.+.|+ +|++|||++++++++.+. +. ... .++.+.+.++|+||.|+|.+..- ..+... ...
T Consensus 152 ~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~-~~~- 229 (297)
T 2egg_A 152 GARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLS-LER- 229 (297)
T ss_dssp HHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSC-CTT-
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCC-HHH-
Confidence 68999999999998 899999999999888654 22 111 24556778999999999987321 111100 111
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..++.+++|+++. |..+. +.+..++
T Consensus 230 ----l~~~~~v~D~~y~-P~~T~-ll~~A~~ 254 (297)
T 2egg_A 230 ----LRPGVIVSDIIYN-PLETK-WLKEAKA 254 (297)
T ss_dssp ----CCTTCEEEECCCS-SSSCH-HHHHHHH
T ss_pred ----cCCCCEEEEcCCC-CCCCH-HHHHHHH
Confidence 3456899999984 55443 4455443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.72 E-value=4.5e-05 Score=66.46 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=59.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||..+++.|...|.+|++|||++++.+.+.+.|+... .++.+.++++|+|++++|....-++. ++. .++
T Consensus 166 iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~~-------l~~--mk~ 236 (293)
T 3d4o_A 166 VGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANV-------LAE--MPS 236 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCBCHHH-------HHH--SCT
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHhCHHH-------HHh--cCC
Confidence 6899999999999999999999988777766676532 46788899999999999874111111 221 245
Q ss_pred CeEEEEcCCCC
Q 022237 79 PQLLIDSSTID 89 (300)
Q Consensus 79 ~~ivid~st~~ 89 (300)
+.++||++...
T Consensus 237 ~~~lin~ar~~ 247 (293)
T 3d4o_A 237 HTFVIDLASKP 247 (293)
T ss_dssp TCEEEECSSTT
T ss_pred CCEEEEecCCC
Confidence 57999998643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.65 E-value=4.1e-05 Score=56.54 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=62.1
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCCCC----C---CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPT----K---ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~----~---~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..+++.|.+.| ++|++++|++++.+.+...+... . .+..++++++|+||.|+|.. ....+... ..
T Consensus 16 iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~---~~- 90 (118)
T 3ic5_A 16 IGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF-LTPIIAKA---AK- 90 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG-GHHHHHHH---HH-
T ss_pred HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch-hhHHHHHH---HH-
Confidence 6899999999999 99999999999998887555321 1 23445678999999999865 33444321 11
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
..+..++|.|+ .+...+++.+...
T Consensus 91 ----~~g~~~~~~~~-~~~~~~~~~~~~~ 114 (118)
T 3ic5_A 91 ----AAGAHYFDLTE-DVAATNAVRALVE 114 (118)
T ss_dssp ----HTTCEEECCCS-CHHHHHHHHHHHH
T ss_pred ----HhCCCEEEecC-cHHHHHHHHHHHH
Confidence 12356777665 4446666665543
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.64 E-value=9.1e-05 Score=65.42 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=60.8
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHHhC------CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDM------GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~~~------g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..+++.|.+. ..+|.+|||++++++++.+. ... +.++++++ ++|+|++|+|... .++.. ..
T Consensus 136 ~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~---pv~~~--~~-- 206 (322)
T 1omo_A 136 QAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK---PVVKA--EW-- 206 (322)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS---CCBCG--GG--
T ss_pred HHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC---ceecH--HH--
Confidence 567788888862 46899999999999888653 234 67889999 9999999999762 33321 12
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNIS 97 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~ 97 (300)
..+|+.|++.++..|. .+++.
T Consensus 207 ---l~~G~~V~~ig~~~p~-~~el~ 227 (322)
T 1omo_A 207 ---VEEGTHINAIGADGPG-KQELD 227 (322)
T ss_dssp ---CCTTCEEEECSCCSTT-CCCBC
T ss_pred ---cCCCeEEEECCCCCCC-ccccC
Confidence 3456899999888776 34443
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=7.9e-05 Score=65.40 Aligned_cols=57 Identities=21% Similarity=0.116 Sum_probs=45.5
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHhC----------CCCC-CCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM----------GVPT-KETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~~----------g~~~-~~~~~e~~~~adiVii~vp~~~ 58 (300)
||++++..|+++| ++|++|||++++++.+... .... ..++ ++++++|+||+|+|.+.
T Consensus 12 ~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~~ 81 (309)
T 1hyh_A 12 VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNIK 81 (309)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCGG
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCcc
Confidence 7999999999999 7999999999887665421 1222 3566 77899999999999874
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.61 E-value=7.1e-05 Score=67.74 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=59.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-----------------------------CCHHHHhhcCCEEE
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-----------------------------ETPFEVAEASDVVI 51 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----------------------------~~~~e~~~~adiVi 51 (300)
||..+++.+...|.+|++||+++++.+.+.+.|.... .+++++++++|+||
T Consensus 201 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI 280 (405)
T 4dio_A 201 AGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVI 280 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEE
Confidence 5889999999999999999999999988887765421 14677889999999
Q ss_pred EecCChh-hhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 52 TMLPSSS-HVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 52 i~vp~~~-~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.|+..+. ....++. ++.++. .++|.+|||++.
T Consensus 281 ~tvlipg~~ap~Lvt--~emv~~--Mk~GsVIVDvA~ 313 (405)
T 4dio_A 281 TTALIPGRPAPRLVT--REMLDS--MKPGSVVVDLAV 313 (405)
T ss_dssp ECCCCSSSCCCCCBC--HHHHTT--SCTTCEEEETTG
T ss_pred ECCcCCCCCCCEEec--HHHHhc--CCCCCEEEEEeC
Confidence 9974332 1112222 234443 356789999875
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.59 E-value=3.9e-05 Score=61.78 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=50.3
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCC----CCH---HHH--hhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV--AEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~----~~~---~e~--~~~adiVii~vp~~~~~~~v~ 64 (300)
||..+++.|.+. |++|+++|+++++++.+.+.|.... .+. .++ +.++|+||+|+|++.....++
T Consensus 50 ~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~ 123 (183)
T 3c85_A 50 IGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQGNQTAL 123 (183)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHH
Confidence 689999999999 9999999999999999888776432 222 233 568999999999886555444
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.57 E-value=7.5e-05 Score=67.06 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=59.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC-------------------------CHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-------------------------TPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~-------------------------~~~e~~~~adiVii~vp 55 (300)
||..+++.+...|.+|++|||++++.+.+.+.|+.... ++.+.++++|+||.++.
T Consensus 195 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~ 274 (381)
T 3p2y_A 195 AGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTAL 274 (381)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCC
Confidence 58889999999999999999999999988887764322 45678899999999973
Q ss_pred Chh-hhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 56 SSS-HVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 56 ~~~-~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.+. ....++. ++.++. .++|.+|||++.
T Consensus 275 iPg~~ap~Lvt--~emv~~--MkpGsVIVDvA~ 303 (381)
T 3p2y_A 275 VPGRPAPRLVT--AAAATG--MQPGSVVVDLAG 303 (381)
T ss_dssp CTTSCCCCCBC--HHHHHT--SCTTCEEEETTG
T ss_pred CCCcccceeec--HHHHhc--CCCCcEEEEEeC
Confidence 331 1111221 223433 346689999875
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00022 Score=65.00 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=62.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|+.|...|.+|++||+++.+.......|... .+++++++++|+|+++..+.. ++.. ..++. .+++.
T Consensus 222 IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~----iI~~--e~l~~--MK~gA 292 (436)
T 3h9u_A 222 VGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDD----IITS--EHFPR--MRDDA 292 (436)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSC----SBCT--TTGGG--CCTTE
T ss_pred HHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcC----ccCH--HHHhh--cCCCc
Confidence 589999999999999999999998887777777654 489999999999998775542 2321 23332 35678
Q ss_pred EEEEcCCCCH
Q 022237 81 LLIDSSTIDP 90 (300)
Q Consensus 81 ivid~st~~p 90 (300)
+|||++...+
T Consensus 293 IVINvgRg~v 302 (436)
T 3h9u_A 293 IVCNIGHFDT 302 (436)
T ss_dssp EEEECSSSGG
T ss_pred EEEEeCCCCC
Confidence 9999986654
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.4e-05 Score=65.36 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=60.4
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCC-CCCCCHHHHhhcCCEEEEecCChh--hhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV-PTKETPFEVAEASDVVITMLPSSS--HVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~-~~~~~~~e~~~~adiVii~vp~~~--~~~~v~~~~~~~l~~~~~ 76 (300)
||++++..|.+.|. +|+++||++++++++.+... ....++.++++++|+||.|+|... .....+. ... .
T Consensus 128 ~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~--~~~-----l 200 (277)
T 3don_A 128 ASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVIS--LNR-----L 200 (277)
T ss_dssp HHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSSC--CTT-----C
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCCC--HHH-----c
Confidence 58899999999998 89999999999887764321 122345666789999999998752 2211111 111 3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
+++.+|+|++..... + .+.+..++
T Consensus 201 ~~~~~V~D~vY~P~~-T-~ll~~A~~ 224 (277)
T 3don_A 201 ASHTLVSDIVYNPYK-T-PILIEAEQ 224 (277)
T ss_dssp CSSCEEEESCCSSSS-C-HHHHHHHH
T ss_pred CCCCEEEEecCCCCC-C-HHHHHHHH
Confidence 456899999887433 3 34454543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00014 Score=63.84 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=58.5
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~~~-----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||..+++.|.+. ..+|.+|||+ +.+++.+. |. ..+ +++++++++|+||+|+|... .++. .+.
T Consensus 132 ~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~---pvl~--~~~- 202 (313)
T 3hdj_A 132 QGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT---PLFA--GQA- 202 (313)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS---CSSC--GGG-
T ss_pred HHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC---cccC--HHH-
Confidence 577888888863 3589999999 55555432 54 345 89999999999999998762 3332 112
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNIS 97 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~ 97 (300)
.++|++|++.++..|.. +++.
T Consensus 203 ----l~~G~~V~~vGs~~p~~-~El~ 223 (313)
T 3hdj_A 203 ----LRAGAFVGAIGSSLPHT-RELD 223 (313)
T ss_dssp ----CCTTCEEEECCCSSTTC-CCCC
T ss_pred ----cCCCcEEEECCCCCCch-hhcC
Confidence 35668999999988863 4443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=68.06 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=67.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..+|+.+...|.+|++||+++.+..+....|... .+++++++++|+|++++.+. .++.. ..++. .++|.
T Consensus 268 IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~----~lI~~--~~l~~--MK~ga 338 (479)
T 1v8b_A 268 VGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNV----DVIKL--EHLLK--MKNNA 338 (479)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSS----SSBCH--HHHTT--CCTTC
T ss_pred HHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChh----hhcCH--HHHhh--cCCCc
Confidence 689999999999999999999998875555667644 58999999999999997433 23321 12332 35678
Q ss_pred EEEEcCCCCH-HHHHHHHH
Q 022237 81 LLIDSSTIDP-QTSRNISA 98 (300)
Q Consensus 81 ivid~st~~p-~~~~~~~~ 98 (300)
++||++.... .....+.+
T Consensus 339 iliNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 339 VVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp EEEECSSTTTSBCHHHHHT
T ss_pred EEEEeCCCCccccchhhhc
Confidence 9999999888 36666665
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00037 Score=53.48 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---H-HhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---E-VAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e-~~~~adiVii~vp~~~~~~~v~ 64 (300)
||..+++.|.+.|++|+++|+++++++.+.+.|... ..+.+ + -+.++|+||+++|++.....++
T Consensus 18 ~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~ 89 (140)
T 3fwz_A 18 VGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIV 89 (140)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHHHH
Confidence 589999999999999999999999999998887642 12222 1 1468999999999985544343
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.43 E-value=8.1e-05 Score=65.60 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=59.2
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHH----h------CC--CCCCCCHHHHhhcCCEEEEecCCh----------
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D------MG--VPTKETPFEVAEASDVVITMLPSS---------- 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~----~------~g--~~~~~~~~e~~~~adiVii~vp~~---------- 57 (300)
||+++|..|+.+|+ +|++||+++++++... . .. +..+.+. +++++||+||++++.+
T Consensus 15 ~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~ 93 (317)
T 2ewd_A 15 IGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSEL 93 (317)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGG
T ss_pred HHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHH
Confidence 79999999999999 9999999998776531 1 11 2233566 7889999999999432
Q ss_pred -----hhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 022237 58 -----SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 98 (300)
Q Consensus 58 -----~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~ 98 (300)
...++++..+... .+ +.+++..|+.....+..+.+
T Consensus 94 ~~~~~~i~~~i~~~i~~~-----~~-~~iii~~sNp~~~~~~~~~~ 133 (317)
T 2ewd_A 94 LFGNARILDSVAEGVKKY-----CP-NAFVICITNPLDVMVSHFQK 133 (317)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CT-TSEEEECCSSHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH-----CC-CcEEEEeCChHHHHHHHHHH
Confidence 1234555433222 12 46788777754444444443
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00052 Score=60.94 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=70.9
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||..++..|.+. +++|. ++|+++++++.+.+. |...+.+.+++++ +.|+|++|+|+....+.+.. .++.
T Consensus 15 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~-- 88 (344)
T 3euw_A 15 IGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITR----AVER-- 88 (344)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHH----HHHT--
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHHH----HHHc--
Confidence 688899999886 67766 789999999887665 7777889999998 89999999999865544432 2322
Q ss_pred CCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++.. +..+...+++.+...+
T Consensus 89 --gk~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 89 --GIPALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp --TCCEEECSCSCSCHHHHHHHHHHHGG
T ss_pred --CCcEEEECCCCCCHHHHHHHHHHHHh
Confidence 225666644 6778888888887765
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00017 Score=66.98 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=64.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..+|+.+...|.+|++||+++.+..+....|... .+++++++++|+|++++.+. .++.. ..++. .+++.
T Consensus 288 IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~----~lI~~--~~l~~--MK~gA 358 (494)
T 3d64_A 288 VGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNY----HVINH--DHMKA--MRHNA 358 (494)
T ss_dssp HHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSS----CSBCH--HHHHH--CCTTE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCcc----cccCH--HHHhh--CCCCc
Confidence 689999999999999999999998765555556654 48999999999999998443 23321 12322 35678
Q ss_pred EEEEcCCCCHH-HHHHH
Q 022237 81 LLIDSSTIDPQ-TSRNI 96 (300)
Q Consensus 81 ivid~st~~p~-~~~~~ 96 (300)
++||++..... ....+
T Consensus 359 ilINvgrg~veID~~aL 375 (494)
T 3d64_A 359 IVCNIGHFDSEIDVAST 375 (494)
T ss_dssp EEEECSSSSCSBCCGGG
T ss_pred EEEEcCCCcchhchHHH
Confidence 99999987763 44444
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00077 Score=51.11 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC----CCCHHH---H-hhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT----KETPFE---V-AEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~----~~~~~e---~-~~~adiVii~vp~~~ 58 (300)
||..+++.|.+.|++|+++|+++++.+.+.+. +... ..+... . ++++|+||+|+|++.
T Consensus 15 iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 15 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 81 (140)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence 58999999999999999999999998887653 5421 122222 2 568999999999873
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.35 E-value=7.4e-05 Score=57.69 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=60.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||..++++|.+.||+ +|++||.+ .+++ .|.....|+.|+-+..|++++++|.. .+.+++.+. .+.. .+
T Consensus 28 ~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~~-~~~~v~~~~---~~~g--i~- 96 (140)
T 1iuk_A 28 PAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPPS-ALMDHLPEV---LALR--PG- 96 (140)
T ss_dssp HHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCHH-HHTTTHHHH---HHHC--CS-
T ss_pred hHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCHH-HHHHHHHHH---HHcC--CC-
Confidence 588999999999997 77788875 2333 47777888999888899999999885 777777542 2211 22
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.+|+..++. .+++.+.+++
T Consensus 97 ~i~~~~g~~----~~~~~~~a~~ 115 (140)
T 1iuk_A 97 LVWLQSGIR----HPEFEKALKE 115 (140)
T ss_dssp CEEECTTCC----CHHHHHHHHH
T ss_pred EEEEcCCcC----HHHHHHHHHH
Confidence 467665544 2455555554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00046 Score=52.85 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=45.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHHHH----hhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFEV----AEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~e~----~~~adiVii~vp~~~ 58 (300)
+|..+++.|.+.|++|+++|+++++++.+.+.+... ..+++.. +.++|+||+++|++.
T Consensus 17 iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 17 AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE 82 (141)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence 589999999999999999999999999988876532 1232221 357899999998763
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=64.12 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC---------CCCC-CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM---------GVPT-KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~---------g~~~-~~~~~e~~~~adiVii~vp~~ 57 (300)
||++++..|+++|+ +|++||+++++++.+... .... .++ .++++++|+||+|+|.+
T Consensus 11 ~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~ 78 (319)
T 1a5z_A 11 VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVP 78 (319)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCC
Confidence 79999999999999 999999999887665321 1111 234 46789999999999975
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00064 Score=59.39 Aligned_cols=94 Identities=10% Similarity=0.070 Sum_probs=68.5
Q ss_pred ChHH-HHHHHHh-CCCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFR-MASNLMK-AGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~-la~~l~~-~G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||.. ++..|.+ .++++. ++|+++++++.+.+. |+..+.+.++++++.|+|++|+|+....+.+.. .++.
T Consensus 17 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~----al~~--- 89 (308)
T 3uuw_A 17 IAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIKI----LLNL--- 89 (308)
T ss_dssp HHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHH----HHHT---
T ss_pred HHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHH----HHHC---
Confidence 4564 6777776 467766 799999999888665 776688999999999999999999865544432 2321
Q ss_pred CCCeEEEE-cCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLID-SSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid-~st~~p~~~~~~~~~~~~ 102 (300)
+.+++++ -.+..+.+.+++.+...+
T Consensus 90 -gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (308)
T 3uuw_A 90 -GVHVYVDKPLASTVSQGEELIELSTK 115 (308)
T ss_dssp -TCEEEECSSSSSSHHHHHHHHHHHHH
T ss_pred -CCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 2246665 456788888888887765
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00082 Score=59.93 Aligned_cols=94 Identities=13% Similarity=0.220 Sum_probs=70.2
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHh--hcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVA--EASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~--~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||..++..|.+. +++|. ++|+++++++.+.+. |+..+.+.++++ .+.|+|++|+|+....+.+.. .++.
T Consensus 16 ~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~-- 89 (354)
T 3db2_A 16 WAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQ----CARS-- 89 (354)
T ss_dssp HHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHHH----HHHT--
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHc--
Confidence 578888888876 77755 889999999887655 777788999999 569999999999866554432 2321
Q ss_pred CCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+..++++.+...+
T Consensus 90 --gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 90 --GKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp --TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred --CCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 225666644 6778888888887765
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0007 Score=59.77 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=69.5
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||..++..|.+. +++|. ++|+++++++.+.+. |+. ..+.+++++ +.|+|++|+|+....+.+.. .++.
T Consensus 14 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~-- 86 (331)
T 4hkt_A 14 IGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIER----FARA-- 86 (331)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT--
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHHH----HHHc--
Confidence 578889999885 67766 789999998887654 767 889999998 89999999999866554432 2321
Q ss_pred CCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+.+.+++.+..++
T Consensus 87 --gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 87 --GKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp --TCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred --CCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 225666543 6788888888887765
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00083 Score=59.89 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=69.7
Q ss_pred ChHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||..++..|.+. ++++. ++|+++++++.+.+. |+..+.+.+++++ +.|+|++|+|+....+.+.. .++.
T Consensus 24 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~~- 98 (354)
T 3q2i_A 24 IANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQSIE----CSEA- 98 (354)
T ss_dssp THHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHHH----HHHT-
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HHHC-
Confidence 788999999987 67755 889999999887654 7777889999987 79999999999865544432 2321
Q ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 75 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 75 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+.+.+++.+..++
T Consensus 99 ---gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 99 ---GFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp ---TCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred ---CCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 224666533 5677888888887765
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00044 Score=64.36 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhh-hhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~-~v~~~~~~~l~~~~~~~~ 79 (300)
||..+++.+...|.+|+++|+++.+++...+.|+. ..++.++++++|+||.|++++..+. +.+ +. .+++
T Consensus 285 IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atgt~~~i~~~~l-------~~--mk~g 354 (494)
T 3ce6_A 285 VGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATGNKDIIMLEHI-------KA--MKDH 354 (494)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSSSSCSBCHHHH-------HH--SCTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCCCHHHHHHHHH-------Hh--cCCC
Confidence 58899999999999999999999998888888876 3578889999999999998774332 222 21 2345
Q ss_pred eEEEEcCCCCH
Q 022237 80 QLLIDSSTIDP 90 (300)
Q Consensus 80 ~ivid~st~~p 90 (300)
.++++++....
T Consensus 355 gilvnvG~~~~ 365 (494)
T 3ce6_A 355 AILGNIGHFDN 365 (494)
T ss_dssp CEEEECSSSGG
T ss_pred cEEEEeCCCCC
Confidence 78999887654
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=62.22 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=57.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhh-hhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~-~v~~~~~~~l~~~~~~ 77 (300)
||++++..|.+.|. +|+++||++++++++.+. +.....++.+.++++|+||.|+|....-. ..+. .+.+ .
T Consensus 119 ~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i~--~~~l-----~ 191 (253)
T 3u62_A 119 AARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPVS--DDSL-----K 191 (253)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSCC--HHHH-----T
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCCC--HHHh-----C
Confidence 68899999999998 899999999999888654 22234567788899999999998642110 0110 1112 3
Q ss_pred CCeEEEEcCCC
Q 022237 78 RPQLLIDSSTI 88 (300)
Q Consensus 78 ~~~ivid~st~ 88 (300)
++++|+|+...
T Consensus 192 ~~~~V~Divy~ 202 (253)
T 3u62_A 192 NLSLVYDVIYF 202 (253)
T ss_dssp TCSEEEECSSS
T ss_pred cCCEEEEeeCC
Confidence 45799998877
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=58.53 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=69.8
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||..++..|.+. +++|. ++|+++++++.+.+. |. ..+.+.+++++ +.|+|++|+|+....+.+.. .++.
T Consensus 16 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~~- 90 (330)
T 3e9m_A 16 IVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAKL----ALSQ- 90 (330)
T ss_dssp THHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHH----HHHT-
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHH----HHHC-
Confidence 788999999985 66766 789999998887654 66 56789999987 79999999999865544432 2321
Q ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 75 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 75 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+.+.+++.+..++
T Consensus 91 ---gk~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 91 ---GKPVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp ---TCCEEECSSCCSSHHHHHHHHHHHHH
T ss_pred ---CCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 224666654 6778888888887765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00032 Score=54.84 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=47.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH-hCCCCC----CCCHH---HH-hhcCCEEEEecCChhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPT----KETPF---EV-AEASDVVITMLPSSSHVLDV 63 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~----~~~~~---e~-~~~adiVii~vp~~~~~~~v 63 (300)
||..+++.|.+.|++|+++|+++++++.+. ..|... ..+.. ++ +.++|+||+|+|++.....+
T Consensus 30 iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~ 101 (155)
T 2g1u_A 30 LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNFFI 101 (155)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHH
Confidence 588999999999999999999999988876 555422 11222 22 56899999999998544433
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0004 Score=61.45 Aligned_cols=56 Identities=20% Similarity=0.119 Sum_probs=42.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHH----h------C--CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D------M--GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~----~------~--g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.++|..|+.+|+ +|.+||+++++++... . . .+..+.+. +++++||+||++++.+
T Consensus 25 vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p 93 (328)
T 2hjr_A 25 IGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP 93 (328)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 69999999999999 9999999998776421 1 0 12333566 7889999999999444
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0009 Score=58.63 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=67.1
Q ss_pred ChHHHHHHHHhC-CCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V-~~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..++..|.+. ++++ .++|+++++++.+.+. +....+.+++++ ++|+|++|+|+....+.+.. .++.
T Consensus 21 ~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~--- 92 (315)
T 3c1a_A 21 WGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITLA----AIAS--- 92 (315)
T ss_dssp TTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHHH----HHHT---
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHHH----HHHC---
Confidence 688899999885 5664 5899999988877655 555678889885 79999999998855443332 2321
Q ss_pred CCCeEEEE-cCCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLID-SSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid-~st~~p~~~~~~~~~~~~ 102 (300)
+..++++ ..+..+...+++.+..++
T Consensus 93 -Gk~v~~eKP~~~~~~~~~~l~~~a~~ 118 (315)
T 3c1a_A 93 -GKAVLVEKPLTLDLAEAEAVAAAAKA 118 (315)
T ss_dssp -TCEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred -CCcEEEcCCCcCCHHHHHHHHHHHHH
Confidence 2256776 356678888888887765
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0022 Score=56.47 Aligned_cols=94 Identities=10% Similarity=0.149 Sum_probs=65.9
Q ss_pred ChHHH-HHHHHhCCCeEE-EEcCChhhHHHHHhC-CCC-CCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRM-ASNLMKAGYKMA-VHDVNCNVMKMFSDM-GVP-TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~l-a~~l~~~G~~V~-~~dr~~~~~~~~~~~-g~~-~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||..+ +..|.+.++++. ++|+++++++.+.+. |.. ...+.+++++ ++|+|++|+|+....+.+.. .++.
T Consensus 11 ~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~- 85 (332)
T 2glx_A 11 IAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLA----AIRA- 85 (332)
T ss_dssp HHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHH----HHHT-
T ss_pred HHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHHH----HHHC-
Confidence 56676 777777778865 789999998877654 654 6778999886 59999999998855443332 2321
Q ss_pred CCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 75 NSVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 75 ~~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
+..++++. .+..+.+.+++.+..++
T Consensus 86 ---Gk~v~~ekP~~~~~~~~~~l~~~a~~ 111 (332)
T 2glx_A 86 ---GKHVLCEKPLAMTLEDAREMVVAARE 111 (332)
T ss_dssp ---TCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred ---CCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 22466653 45678888888887765
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00041 Score=61.41 Aligned_cols=54 Identities=15% Similarity=0.019 Sum_probs=43.0
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHh--------C--C--CCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD--------M--G--VPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~--------~--g--~~~~~~~~e~~~~adiVii~v 54 (300)
||+++|..|+..|| +|.+||+++++++.... . . +..+.++++++++||+||+++
T Consensus 20 vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~ 86 (331)
T 1pzg_A 20 IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 86 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence 68999999999999 99999999987765211 1 1 223467888899999999999
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00075 Score=59.76 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=72.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+..-|.+|++||+.+.. ...+.+.. ..++++++++||+|.+++|-..+.+.++.. ..++. .+++.
T Consensus 152 IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~-~~~l~ell~~sDivslh~Plt~~T~~li~~--~~l~~--mk~~a 224 (334)
T 3kb6_A 152 IGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCV-YTSLDELLKESDVISLHVPYTKETHHMINE--ERISL--MKDGV 224 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHHH--SCTTE
T ss_pred HHHHHHHhhcccCceeeecCCccch--hhhhcCce-ecCHHHHHhhCCEEEEcCCCChhhccCcCH--HHHhh--cCCCe
Confidence 4889999999999999999987643 23344544 458999999999999999988787777653 24443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-...-....+.+.+.+
T Consensus 225 ~lIN~aRG~iVde~aL~~aL~~ 246 (334)
T 3kb6_A 225 YLINTARGKVVDTDALYRAYQR 246 (334)
T ss_dssp EEEECSCGGGBCHHHHHHHHHT
T ss_pred EEEecCccccccHHHHHHHHHh
Confidence 9999887666666677777764
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.013 Score=49.81 Aligned_cols=150 Identities=18% Similarity=0.186 Sum_probs=92.4
Q ss_pred CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCC
Q 022237 33 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 112 (300)
Q Consensus 33 g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
|+..+++..|+++++|++|+-+|.......++.. +++. .+.|.+|.+++|++|...-++-+.+.+.
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakk---ii~~--lpEgAII~nTCTipp~~ly~~le~l~R~--------- 193 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKK---FADA--IPEGAIVTHACTIPTTKFAKIFKDLGRE--------- 193 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHH---HGGG--SCTTCEEEECSSSCHHHHHHHHHHTTCT---------
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHHHH---HHhh--CcCCCEEecccCCCHHHHHHHHHHhCcc---------
Confidence 6788889999999999999999998645556543 3443 5678999999999998777666665431
Q ss_pred CCceEEEeccCCChHhhhcCceEEEec-cCHHHHHHHHHHHHhcCCCeEeeCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022237 113 ENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALT 191 (300)
Q Consensus 113 ~~~~~~~~pv~g~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~ 191 (300)
.+...+ -..+..+.. .|+..+-.+ .+++..+++.+|.+..++.++.+..--.+..-.|+ .++.+...+++.+-..
T Consensus 194 -DvgIsS-~HPaaVPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMg-s~vTAv~~AGiL~Y~~ 269 (358)
T 2b0j_A 194 -DLNITS-YHPGCVPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMC-SAVTATVYAGLLAYRD 269 (358)
T ss_dssp -TSEEEE-CBCSSCTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTT-HHHHHHHHHHHHHHHH
T ss_pred -cCCeec-cCCCCCCCC-CCccccccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhH-HHHHHHHHHHHHHHHH
Confidence 122222 112222222 455333333 27889999999999999988877431111111122 3334444455555554
Q ss_pred HH-HHcCCCH
Q 022237 192 LG-QSLGISA 200 (300)
Q Consensus 192 l~-~~~Gi~~ 200 (300)
.+ +-.|.+.
T Consensus 270 ~vtkIlgAP~ 279 (358)
T 2b0j_A 270 AVTKILGAPA 279 (358)
T ss_dssp HHHTTSCCCH
T ss_pred HHHHHhcCcH
Confidence 44 2345553
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0018 Score=57.40 Aligned_cols=94 Identities=16% Similarity=0.253 Sum_probs=69.1
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCC-CCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVP-TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~-~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||..++..|.+. ++++. ++|+++++++.+.+. |.. .+.+.+++++ ++|+|++|+|+....+.+.. .++.
T Consensus 13 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~~- 87 (344)
T 3ezy_A 13 IGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVIA----CAKA- 87 (344)
T ss_dssp HHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT-
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHHH----HHhc-
Confidence 577888888875 56765 789999998887664 553 6789999988 89999999999865544432 2321
Q ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 75 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 75 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+...+++.+...+
T Consensus 88 ---gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 88 ---KKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp ---TCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred ---CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 225777654 6788888888887765
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0011 Score=59.88 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC------CCCHHHHhhcCCEEEEecCChhh-hhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------KETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~------~~~~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~l~ 72 (300)
||..+++.+...|.+|++||+++++++.+.+ .|... ..++.+.++++|+||.|++.+.. ...++. ...++
T Consensus 179 iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~~li~--~~~l~ 256 (377)
T 2vhw_A 179 AGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVS--NSLVA 256 (377)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCCCCBC--HHHHT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCcceec--HHHHh
Confidence 5889999999999999999999999887766 45432 23456778899999999976532 111111 11222
Q ss_pred CCCCCCCeEEEEcCC
Q 022237 73 GGNSVRPQLLIDSST 87 (300)
Q Consensus 73 ~~~~~~~~ivid~st 87 (300)
. .+++.+|||++.
T Consensus 257 ~--mk~g~~iV~va~ 269 (377)
T 2vhw_A 257 H--MKPGAVLVDIAI 269 (377)
T ss_dssp T--SCTTCEEEEGGG
T ss_pred c--CCCCcEEEEEec
Confidence 2 234568899873
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0034 Score=56.09 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=68.9
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||...+..|.+. +++|. ++|+++++++...+.|+..+.+.+++++ +.|+|++|+|+....+.+.. .++.
T Consensus 16 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a--- 88 (359)
T 3e18_A 16 MGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAIS----ALEA--- 88 (359)
T ss_dssp HHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT---
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC---
Confidence 577788888876 66765 7899999988766678888899999987 78999999999866554432 2321
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+.+++++.+..++
T Consensus 89 -GkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (359)
T 3e18_A 89 -GKHVVCEKPVTMTSEDLLAIMDVAKR 114 (359)
T ss_dssp -TCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred -CCCEEeeCCCcCCHHHHHHHHHHHHH
Confidence 224666532 5677888888887765
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00029 Score=54.57 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=57.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||..+++.|.+.||+ +|++||.. +.+ .|.....++.|+....|++++++|.+ .+.+++.+. .+.. -+.
T Consensus 37 ~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~~-~~~~vv~~~---~~~g---i~~ 104 (144)
T 2d59_A 37 DANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKPK-LTMEYVEQA---IKKG---AKV 104 (144)
T ss_dssp HHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCHH-HHHHHHHHH---HHHT---CSE
T ss_pred hHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCHH-HHHHHHHHH---HHcC---CCE
Confidence 578899999999997 56666654 222 47777888999888899999999986 777777542 2211 124
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
+|+. ++.. .+++.+.+++
T Consensus 105 i~~~-~g~~---~~~l~~~a~~ 122 (144)
T 2d59_A 105 VWFQ-YNTY---NREASKKADE 122 (144)
T ss_dssp EEEC-TTCC---CHHHHHHHHH
T ss_pred EEEC-CCch---HHHHHHHHHH
Confidence 5554 3333 3455555554
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.001 Score=58.25 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHH---hC-------C--CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFS---DM-------G--VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~---~~-------g--~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||+++|..|+.+ |++|.+||+++++++.+. .. . +..+.+.++ ++++|+||+++|.+
T Consensus 11 vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~p 80 (310)
T 1guz_A 11 VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGLP 80 (310)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCCC
Confidence 689999999985 799999999998776542 11 1 123356665 89999999999865
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0023 Score=56.74 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=68.4
Q ss_pred ChHHHHHHHH-h-CCCeEE-EEcCChhhHHHHHhC-C--CCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLM-K-AGYKMA-VHDVNCNVMKMFSDM-G--VPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~-~-~G~~V~-~~dr~~~~~~~~~~~-g--~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..++..|. + .++++. ++|+++++++.+.+. | ...+++.++++++ .|+|++|+|+....+.+.. .++
T Consensus 13 ~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~ 88 (344)
T 3mz0_A 13 IGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESSVLK----AIK 88 (344)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHHHHH----HHH
Confidence 5788888888 4 467765 789999999887654 6 5677899999876 9999999999866554432 232
Q ss_pred CCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 73 GGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 73 ~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
. +.+++++-- +..+..++++.+...+
T Consensus 89 ~----Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 89 A----QKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp T----TCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred C----CCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 2 225666544 6678888888887765
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0042 Score=54.93 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=66.1
Q ss_pred ChHHHHHHHH-h-CCCeE-EEEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLM-K-AGYKM-AVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~-~-~G~~V-~~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||..++..|. + .++++ .++|+++++++.+.+. |. ....+.+++++ ++|+|++|+|+....+.+.. .++.
T Consensus 19 ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~----al~~ 94 (346)
T 3cea_A 19 LGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIY----AMNA 94 (346)
T ss_dssp THHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHHHH----HHHT
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHHHH----HHHC
Confidence 6888899988 5 36774 5789999999887665 66 45778999886 69999999999855544432 2321
Q ss_pred CCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 74 GNSVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 74 ~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
+..++++. .+..+...+++.+...+
T Consensus 95 ----G~~v~~eKp~~~~~~~~~~l~~~a~~ 120 (346)
T 3cea_A 95 ----GLNVFCEKPLGLDFNEVDEMAKVIKS 120 (346)
T ss_dssp ----TCEEEECSCCCSCHHHHHHHHHHHHT
T ss_pred ----CCEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 22456652 35567777788776654
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0038 Score=54.71 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=65.8
Q ss_pred ChHH-HHHHHHh-CCCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFR-MASNLMK-AGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~-la~~l~~-~G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||.. ++..|.+ .++++. ++|+++++++.+.+. |+...++.+++..++|+|++|+|+....+.+.. .++.
T Consensus 16 ~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~----al~~--- 88 (319)
T 1tlt_A 16 IAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVST----LLNA--- 88 (319)
T ss_dssp HHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH----HHHT---
T ss_pred HHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHHH----HHHc---
Confidence 4665 7777776 367766 899999998887654 666667777765789999999998855444432 2321
Q ss_pred CCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
+..++++. .+..+.+.+++.+..++
T Consensus 89 -G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 89 -GVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp -TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred -CCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22467763 46678888888887765
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00084 Score=58.70 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=39.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHh---CC------CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD---MG------VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~---~g------~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||++++..|+.+|+ +|.+||+++++++.... .+ .+...+..+++++||+||++++.+
T Consensus 11 vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 11 VGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGAN 78 (304)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC---
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 68999999999999 99999999986653221 11 111112346789999999999655
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00043 Score=59.82 Aligned_cols=83 Identities=8% Similarity=-0.005 Sum_probs=55.1
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-C---CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G---VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g---~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||.+++..|.+.|. +|++|||++++++++.+. + -....+.+++..++|+||.|+|........... .+.+
T Consensus 137 ~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~l~-~~~l---- 211 (281)
T 3o8q_A 137 AARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAID-PVIF---- 211 (281)
T ss_dssp HHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC----CSCC-GGGE----
T ss_pred HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCCCC-HHHh----
Confidence 58899999999996 899999999998877654 1 111224455457899999999987432211111 1122
Q ss_pred CCCCeEEEEcCCCC
Q 022237 76 SVRPQLLIDSSTID 89 (300)
Q Consensus 76 ~~~~~ivid~st~~ 89 (300)
.++.+|+|+....
T Consensus 212 -~~~~~V~DlvY~P 224 (281)
T 3o8q_A 212 -SSRSVCYDMMYGK 224 (281)
T ss_dssp -EEEEEEEESCCCS
T ss_pred -CcCCEEEEecCCC
Confidence 3457899998764
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0026 Score=56.61 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=68.6
Q ss_pred ChH-HHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGF-RMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~-~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||. .++..|.+. +++|. ++|+++++++++.+. |+....+.+++++ +.|+|++|+|+....+.+.. .++.
T Consensus 38 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a- 112 (350)
T 3rc1_A 38 IAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDR----ALRA- 112 (350)
T ss_dssp HHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHHH----HHHT-
T ss_pred HHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HHHC-
Confidence 455 577888876 67765 789999999888665 7777789999986 58999999999866554432 2321
Q ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 75 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 75 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+.+++++.+..++
T Consensus 113 ---Gk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 113 ---GKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp ---TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred ---CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 225666644 6678888888887765
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0055 Score=54.03 Aligned_cols=91 Identities=12% Similarity=0.219 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCeE-EEEcCChhhHHHHHhC--CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 4 RMASNLMKAGYKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 4 ~la~~l~~~G~~V-~~~dr~~~~~~~~~~~--g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
.++..|...|++| .++|+++++++.+.+. +...+.+.++.++ +.|+|++|+|+....+.+.. .++. +
T Consensus 19 ~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a----G 90 (336)
T 2p2s_A 19 DMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELALR----TLDA----G 90 (336)
T ss_dssp HHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHH----HHHT----T
T ss_pred HhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHHH----HHHC----C
Confidence 4666776678885 5889999998887665 5677889999986 68999999999866554442 2321 2
Q ss_pred CeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
.+++++. .+..+.+.+++.+..++
T Consensus 91 khVl~EKP~a~~~~e~~~l~~~a~~ 115 (336)
T 2p2s_A 91 KDFFTAKPPLTTLEQLDAVQRRVAE 115 (336)
T ss_dssp CEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2467764 46677888888887765
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0018 Score=59.14 Aligned_cols=81 Identities=19% Similarity=0.136 Sum_probs=59.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+...|.+|+++|+++.+.......|... .+++++++.+|+|++++++.. ++.. ..+.. .+++.
T Consensus 258 IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~----lI~~--e~l~~--MK~GA 328 (464)
T 3n58_A 258 VGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKD----VITI--DHMRK--MKDMC 328 (464)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSS----SBCH--HHHHH--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCcc----ccCH--HHHhc--CCCCe
Confidence 588999999999999999999998776666667654 478999999999999876542 2211 12222 35668
Q ss_pred EEEEcCCCCH
Q 022237 81 LLIDSSTIDP 90 (300)
Q Consensus 81 ivid~st~~p 90 (300)
++|+++-...
T Consensus 329 ILINvGRgdv 338 (464)
T 3n58_A 329 IVGNIGHFDN 338 (464)
T ss_dssp EEEECSSSTT
T ss_pred EEEEcCCCCc
Confidence 9999886543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0032 Score=55.31 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=63.0
Q ss_pred ChH-HHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CCCC-CCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGF-RMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GVPT-KETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~-~la~~l~~~-G~~V~~~dr~~~~~~~~~~~-g~~~-~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||. .++..|.+. +++|.++|+++++++++.+. |... ..+..+.+ .++|+|++|+|+....+.+.. .++.
T Consensus 13 ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~----al~~-- 86 (323)
T 1xea_A 13 IAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF----FLHL-- 86 (323)
T ss_dssp HHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH----HHHT--
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHHH----HHHC--
Confidence 466 477888764 67877999999999887654 6543 44445555 689999999998854443322 2321
Q ss_pred CCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 76 SVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 76 ~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
+..++++. .+.++...+++.+..++
T Consensus 87 --Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 87 --GIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp --TCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred --CCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 12466663 45677888888887765
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0027 Score=57.72 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=59.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.|...|.+|+++|+++.+.......|... .+++++++.+|+|++|..+. .++.. ..+.. .+++.
T Consensus 231 IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~----~lI~~--e~l~~--MK~ga 301 (435)
T 3gvp_A 231 VGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNK----NVVTR--EHLDR--MKNSC 301 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCS----CSBCH--HHHHH--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCc----ccCCH--HHHHh--cCCCc
Confidence 588999999999999999999998776666667543 57899999999999984333 22221 12222 24568
Q ss_pred EEEEcCCCCH
Q 022237 81 LLIDSSTIDP 90 (300)
Q Consensus 81 ivid~st~~p 90 (300)
++|+++...+
T Consensus 302 ilINvgrg~~ 311 (435)
T 3gvp_A 302 IVCNMGHSNT 311 (435)
T ss_dssp EEEECSSTTT
T ss_pred EEEEecCCCc
Confidence 9999887654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0047 Score=52.69 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=47.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|.++|..|.+.|..|++++++ +.++++.+++||+||.+++.+.- +. .+. .++|.
T Consensus 162 VG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~--~~~-----vk~Ga 216 (276)
T 3ngx_A 162 VGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGF----LN--REM-----VTPGS 216 (276)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTC----BC--GGG-----CCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCcc----cc--Hhh-----ccCCc
Confidence 5888999999889899888763 35788999999999999988732 21 122 34568
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
+|||.+..
T Consensus 217 vVIDvgi~ 224 (276)
T 3ngx_A 217 VVIDVGIN 224 (276)
T ss_dssp EEEECCCE
T ss_pred EEEEeccC
Confidence 99998764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0029 Score=56.74 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=53.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC------CCCHHHHhhcCCEEEEecCChhh-hhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------KETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~------~~~~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~l~ 72 (300)
||..+++.+...|++|+++||++++.+.+.+ .|... ..+..+.++++|+||.|++.+.. ...++. ...++
T Consensus 177 iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~--~~~l~ 254 (369)
T 2eez_A 177 VGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVT--RDMLS 254 (369)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSC--HHHHT
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHH--HHHHH
Confidence 5889999999999999999999999887765 44431 23456778899999999986631 111111 11222
Q ss_pred CCCCCCCeEEEEcCCC
Q 022237 73 GGNSVRPQLLIDSSTI 88 (300)
Q Consensus 73 ~~~~~~~~ivid~st~ 88 (300)
. .+++.+|||.+..
T Consensus 255 ~--mk~gg~iV~v~~~ 268 (369)
T 2eez_A 255 L--MKEGAVIVDVAVD 268 (369)
T ss_dssp T--SCTTCEEEECC--
T ss_pred h--hcCCCEEEEEecC
Confidence 2 2344688988753
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0054 Score=54.69 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=68.5
Q ss_pred ChHHHHHHHH-h-CCCeEE-EEcCChhhHHHHHhC-C--CCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLM-K-AGYKMA-VHDVNCNVMKMFSDM-G--VPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~-~-~G~~V~-~~dr~~~~~~~~~~~-g--~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..++..|. + .+++|. ++|+++++++.+.+. | ...+.+.+++++ +.|+|++|+|+....+.+.. .++
T Consensus 34 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~ 109 (357)
T 3ec7_A 34 IGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHADVAVA----ALN 109 (357)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHH
Confidence 5778888888 4 367765 789999999887664 5 567789999987 58999999999866554432 232
Q ss_pred CCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 73 GGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 73 ~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
. +..++++-- +..+.+++++.+...+
T Consensus 110 a----Gk~Vl~EKPla~~~~e~~~l~~~a~~ 136 (357)
T 3ec7_A 110 A----NKYVFCEKPLAVTAADCQRVIEAEQK 136 (357)
T ss_dssp T----TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred C----CCCEEeecCccCCHHHHHHHHHHHHH
Confidence 2 225666644 6678888888887765
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.002 Score=56.79 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHh---C-------C--CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD---M-------G--VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~---~-------g--~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||.+++..|+..|+ +|.+||+++++++.... . . +..+.+. +++++||+||++++.
T Consensus 15 vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~ 82 (322)
T 1t2d_A 15 IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF 82 (322)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 68999999999998 99999999987653211 1 1 2223566 789999999999943
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0017 Score=53.69 Aligned_cols=59 Identities=12% Similarity=0.297 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-CCCCC----CCC---HHHH-hhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT----KET---PFEV-AEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~----~~~---~~e~-~~~adiVii~vp~~~~ 59 (300)
||..+++.|.+.|++|+++|+++++++.+.+ .+... ..+ +.++ ++++|+||++++++..
T Consensus 11 ~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~ 78 (218)
T 3l4b_C 11 TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV 78 (218)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH
Confidence 5899999999999999999999999988764 34321 122 2233 5689999999998843
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0024 Score=58.01 Aligned_cols=82 Identities=15% Similarity=0.213 Sum_probs=55.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC---------------------------CHHHHhhcCCEEEEe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE---------------------------TPFEVAEASDVVITM 53 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~---------------------------~~~e~~~~adiVii~ 53 (300)
||...++.+...|.+|+++|+++++.+.+.+.|+.... ++.+.++.+|+||.+
T Consensus 183 iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~ 262 (401)
T 1x13_A 183 AGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTT 262 (401)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 57888999999999999999999998888777765332 256777899999999
Q ss_pred --cCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 54 --LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 54 --vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
+|.. ....++. ...++. .+++.+|||++.
T Consensus 263 ~~~pg~-~ap~li~--~~~l~~--mk~g~vIVdva~ 293 (401)
T 1x13_A 263 ALIPGK-PAPKLIT--REMVDS--MKAGSVIVDLAA 293 (401)
T ss_dssp CCCTTS-CCCCCBC--HHHHHT--SCTTCEEEETTG
T ss_pred CccCCC-CCCeeeC--HHHHhc--CCCCcEEEEEcC
Confidence 4421 1111111 112222 234578999875
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0044 Score=53.10 Aligned_cols=82 Identities=10% Similarity=0.019 Sum_probs=55.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CC--C-CCCCHHHHh-hcCCEEEEecCChhhhhhhhcCC-CCcccCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--P-TKETPFEVA-EASDVVITMLPSSSHVLDVYNGP-NGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~--~-~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~-~~~l~~~ 74 (300)
||.+++..|++.|.+|++|||++++++++.+. +. . ...+.++.. ..+|+||.|+|.... .++. .. .+.
T Consensus 130 ~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~~-~i~~~~---- 203 (271)
T 1nyt_A 130 ASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDIP-AIPSSL---- 203 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCCC-CCCGGG----
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCCC-CCCHHH----
Confidence 68999999999999999999999988777543 21 1 112223332 489999999998743 2221 11 111
Q ss_pred CCCCCeEEEEcCCCC
Q 022237 75 NSVRPQLLIDSSTID 89 (300)
Q Consensus 75 ~~~~~~ivid~st~~ 89 (300)
.+++.+++|++...
T Consensus 204 -l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 204 -IHPGIYCYDMFYQK 217 (271)
T ss_dssp -CCTTCEEEESCCCS
T ss_pred -cCCCCEEEEeccCC
Confidence 23557999988864
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0044 Score=57.57 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCC--C
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 236 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 236 (300)
+..+.+|++.|++.+..+.+.+|++.+.++ +++|..++.++++.++ ..||+++..... +.....-.+ +
T Consensus 317 ~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a---~~~~~~l~~l~~ 393 (474)
T 2iz1_A 317 DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDA---FDKDSELENLLL 393 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHH---HHHCTTCCCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHH---HhcCCChhhhhc
Confidence 889999999999999999999999999988 7899999999999887 567765422110 000000000 0
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 237 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 237 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
++-|. +.......+.++..+-+.|+|+|.+.++...|+.-...-+..
T Consensus 394 ~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~ 442 (474)
T 2iz1_A 394 DDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPA 442 (474)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchh
Confidence 11121 223345578899999999999999999999887765544443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=50.25 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=41.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---HH-hhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---EV-AEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e~-~~~adiVii~vp~~ 57 (300)
||..+++.|.+.|++|+++|+++++.+.+.+.+... ..+.+ ++ +.++|+||++++.+
T Consensus 17 iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 17 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 589999999999999999999999887776554321 11222 11 45678888888764
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.014 Score=51.20 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=65.5
Q ss_pred ChHHHHHHHHhCC-CeEE-EEcCChhhHHHHHhC-CCC-CCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 1 MGFRMASNLMKAG-YKMA-VHDVNCNVMKMFSDM-GVP-TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~-~~dr~~~~~~~~~~~-g~~-~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
||..++..|.+.+ .+|. ++|+++++++++.+. |.. .+.+.+++++ +.|+|++|+|+....+.+.. .++.
T Consensus 16 ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a- 90 (329)
T 3evn_A 16 VAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKA----ALLA- 90 (329)
T ss_dssp THHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHHH----HHHT-
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HHHC-
Confidence 6788888888764 4554 789999998887665 554 6789999997 79999999999865544432 2321
Q ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 75 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 75 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+...+++.+..++
T Consensus 91 ---Gk~Vl~EKP~a~~~~e~~~l~~~a~~ 116 (329)
T 3evn_A 91 ---GKHVLVEKPFTLTYDQANELFALAES 116 (329)
T ss_dssp ---TCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred ---CCeEEEccCCcCCHHHHHHHHHHHHH
Confidence 225666644 5678888888887765
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0064 Score=52.57 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=45.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHH--HHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPF--EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~--e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
+|.++|..|.+.|..|++++++.. +++ +.+++||+||.+++.+.- +. .+. .++
T Consensus 177 VG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~----I~--~~~-----vk~ 231 (300)
T 4a26_A 177 VGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY----VK--GEW-----IKE 231 (300)
T ss_dssp THHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC----BC--GGG-----SCT
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC----Cc--HHh-----cCC
Confidence 588888888888888888887322 344 889999999999998632 21 122 345
Q ss_pred CeEEEEcCC
Q 022237 79 PQLLIDSST 87 (300)
Q Consensus 79 ~~ivid~st 87 (300)
|.+|||.+.
T Consensus 232 GavVIDvgi 240 (300)
T 4a26_A 232 GAAVVDVGT 240 (300)
T ss_dssp TCEEEECCC
T ss_pred CcEEEEEec
Confidence 689999876
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0073 Score=53.86 Aligned_cols=94 Identities=9% Similarity=0.115 Sum_probs=65.5
Q ss_pred ChH-HHHHHHHhC-CCeEE-EEcCChhhHHHHHhC--CCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGF-RMASNLMKA-GYKMA-VHDVNCNVMKMFSDM--GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~-~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~--g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||. .++..|.+. +++|. ++|+++++++.+.+. +...+.+.++++++ .|+|++|+|+....+-+.. .++.
T Consensus 16 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a 91 (359)
T 3m2t_A 16 QMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLL----AMSK 91 (359)
T ss_dssp HHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHC
Confidence 344 367777765 66765 889999999988876 45677899999875 4999999999865544432 2321
Q ss_pred CCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 74 GNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 74 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +..+..++++.+..++
T Consensus 92 ----GkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 92 ----GVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp ----TCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred ----CCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 224666533 5667788888877765
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.018 Score=53.55 Aligned_cols=115 Identities=12% Similarity=0.100 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCC--C
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 236 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 236 (300)
+..+.+|++.|++.+..+.+.+|++.+.++ +++|..++.++++.++ ..||+++..... +.....-.+ +
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a---~~~~~~l~~l~~ 401 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDA---CAENPQIANLLL 401 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHH---HHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHH---HhcCCChHhhhc
Confidence 888999999999999999999999999988 7899999999999887 567765422110 000000000 0
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 237 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 237 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
++-|. +.......+.++..+-+.|+|+|.+.++...|+.-...-+..
T Consensus 402 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~ 450 (480)
T 2zyd_A 402 APYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPA 450 (480)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchh
Confidence 11121 223334578899999999999999999999988776555544
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.024 Score=52.93 Aligned_cols=115 Identities=12% Similarity=0.121 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCC--C
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 236 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 236 (300)
+..+.+|++.|++.+..+.+.+|++.+.++ +++|..++.++++.++ ..||+++..... +.....-.+ +
T Consensus 322 ~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a---~~~~~~l~~l~~ 398 (497)
T 2p4q_A 322 DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKA---YREEPDLENLLF 398 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHH---HHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHH---HhcCCChhhhhc
Confidence 578999999999999999999999999988 7899999999999887 567776522110 000000000 0
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 237 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 237 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
++-|. +.......+.++..+-+.|+|+|.+.++...|+.-...-+..
T Consensus 399 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a 447 (497)
T 2p4q_A 399 NKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPA 447 (497)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchh
Confidence 11121 223334578899999999999999999999887765544443
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.24 E-value=0.016 Score=51.01 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=66.4
Q ss_pred ChHHHHHHHHhCC---Ce-EEEEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G---~~-V~~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||..++..|.+.+ ++ |.++||++++++++.+. |. ..+++.++.++ +.|+|++|+|+....+.+.. .++
T Consensus 13 ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~ 88 (334)
T 3ohs_X 13 ISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVML----CLA 88 (334)
T ss_dssp HHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHHHHH----HHH
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHH----HHh
Confidence 4667777787654 34 45789999999888665 65 46789999987 69999999999866554432 232
Q ss_pred CCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 73 GGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 73 ~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
. +.+++++-- +....+.+++.+..++
T Consensus 89 ~----GkhVl~EKP~a~~~~e~~~l~~~a~~ 115 (334)
T 3ohs_X 89 A----GKAVLCEKPMGVNAAEVREMVTEARS 115 (334)
T ss_dssp T----TCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred c----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 225666642 5678888888887765
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.018 Score=51.29 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=65.7
Q ss_pred ChHHHHHHHHhC-CCeE-EEEcCChhhHHHHHhC-C----CCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDM-G----VPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V-~~~dr~~~~~~~~~~~-g----~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||..++..|.+. ++++ .++|+++++++.+.+. | .....+.+++++ +.|+|++|+|+....+.+.. .+
T Consensus 17 ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al 92 (362)
T 1ydw_A 17 IARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIK----AA 92 (362)
T ss_dssp THHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHH----HH
T ss_pred HHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHHHHHH----HH
Confidence 688888888875 5665 5789999998877654 5 345678999886 59999999999855443332 23
Q ss_pred cCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 72 QGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 72 ~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
+. +.+++++. .+......+++.+..++
T Consensus 93 ~a----Gk~V~~EKP~a~~~~e~~~l~~~a~~ 120 (362)
T 1ydw_A 93 EK----GKHILLEKPVAMNVTEFDKIVDACEA 120 (362)
T ss_dssp TT----TCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred HC----CCeEEEecCCcCCHHHHHHHHHHHHH
Confidence 21 22466653 35677888888887765
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=56.50 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=40.9
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHH--HHH-hCCC------CC-CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK--MFS-DMGV------PT-KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~--~~~-~~g~------~~-~~~~~e~~~~adiVii~vp~~ 57 (300)
||++++..|+++|+ +|++|||++++++ .+. ..+. .. ..+..++++++|+||++++.+
T Consensus 18 vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~~ 86 (319)
T 1lld_A 18 VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR 86 (319)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCCC
Confidence 68999999999999 9999999987765 221 2221 11 111245678999999999654
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0022 Score=54.88 Aligned_cols=94 Identities=17% Similarity=0.085 Sum_probs=59.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++++..|.+.|.+|+++||++++++++.+.+.... +.+++ .++|+||-|+|....-...+. .+.+.+. .+++.
T Consensus 129 aaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l~-~~~l~~~--l~~~~ 203 (269)
T 3phh_A 129 SAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPLN-KEVLKGY--FKEGK 203 (269)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSSC-HHHHHHH--HHHCS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCCC-hHHHHhh--CCCCC
Confidence 5889999999999999999999999988874453322 22332 389999999987632211110 0000000 12347
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
+++|++..+ .+. +.+..++
T Consensus 204 ~v~D~vY~P--~T~-ll~~A~~ 222 (269)
T 3phh_A 204 LAYDLAYGF--LTP-FLSLAKE 222 (269)
T ss_dssp EEEESCCSS--CCH-HHHHHHH
T ss_pred EEEEeCCCC--chH-HHHHHHH
Confidence 999998764 333 4444443
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.01 Score=55.19 Aligned_cols=98 Identities=9% Similarity=0.063 Sum_probs=67.5
Q ss_pred ChHHHHHHHHhC--CCeE-EEEcCChhhHHHHHhC-CCC---CCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSDM-GVP---TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V-~~~dr~~~~~~~~~~~-g~~---~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||...+..|.+. +++| .++|+++++++.+.+. |+. .+.+.+++++ +.|+|++|+|+....+.+.. .+
T Consensus 54 ~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~----al 129 (479)
T 2nvw_A 54 VAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKN----IL 129 (479)
T ss_dssp HHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HH
Confidence 355677888875 6775 4889999999887654 654 6789999986 68999999999866554442 22
Q ss_pred cCCC--CCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 72 QGGN--SVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 72 ~~~~--~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
+.+. .....++++. .+..+.+++++.+..++
T Consensus 130 ~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~ 163 (479)
T 2nvw_A 130 EHSSQNLNLRYLYVEWALAASVQQAEELYSISQQ 163 (479)
T ss_dssp HHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 2100 0002577775 45678888888877654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.012 Score=53.03 Aligned_cols=83 Identities=12% Similarity=0.156 Sum_probs=54.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC--CC---------------------------HHHHhhcCCEEE
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ET---------------------------PFEVAEASDVVI 51 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~---------------------------~~e~~~~adiVi 51 (300)
+|...++.+...|.+|+++|+++++.+.+.+.|+... +. +.+.++.+|+||
T Consensus 183 iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi 262 (384)
T 1l7d_A 183 AGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAI 262 (384)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEE
Confidence 4788889999999999999999998888877776433 11 566778999999
Q ss_pred EecCChhh-hhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 52 TMLPSSSH-VLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 52 i~vp~~~~-~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
.|++.+.. ...++. ...++. .+++.+|+|++.
T Consensus 263 ~~~~~pg~~~~~li~--~~~l~~--mk~g~vivdva~ 295 (384)
T 1l7d_A 263 TTALIPGKPAPVLIT--EEMVTK--MKPGSVIIDLAV 295 (384)
T ss_dssp ECCCCTTSCCCCCSC--HHHHTT--SCTTCEEEETTG
T ss_pred ECCccCCCCCCeeeC--HHHHhc--CCCCCEEEEEec
Confidence 99943311 111111 111222 234568998774
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0079 Score=52.56 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=41.4
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHH----HhC------CC--CCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SDM------GV--PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~----~~~------g~--~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.+++..|+..|+ +|.++|+++++++.. .+. .. ..+.+. +++++||+||++++.+
T Consensus 13 vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 13 VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 68999999999997 999999998776432 111 11 223565 7889999999998655
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.011 Score=54.73 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=59.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|+.|+..|.+|+++|+++.+..+....|.. ..+.+++++.+|+|+.+......+..- .+.. .+++.
T Consensus 276 IG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d-v~~lee~~~~aDvVi~atG~~~vl~~e------~l~~--mk~ga 346 (488)
T 3ond_A 276 VGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ-VLTLEDVVSEADIFVTTTGNKDIIMLD------HMKK--MKNNA 346 (488)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGTTTTCSEEEECSSCSCSBCHH------HHTT--SCTTE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc-cCCHHHHHHhcCEEEeCCCChhhhhHH------HHHh--cCCCe
Confidence 58999999999999999999999998888777764 357788889999999988655333221 1211 23457
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
+|++.+..
T Consensus 347 iVvNaG~~ 354 (488)
T 3ond_A 347 IVCNIGHF 354 (488)
T ss_dssp EEEESSST
T ss_pred EEEEcCCC
Confidence 88988764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0075 Score=53.90 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=44.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-------CCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-------ETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~~~e~~~~adiVii~vp~~ 57 (300)
+|...++.+...|.+|+++||++++++.+.+.+.... .+..+.+..+|+||-|++.+
T Consensus 178 vG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 178 VGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence 4788899999999999999999999888866543211 23456677999999999775
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0058 Score=56.58 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=41.9
Q ss_pred hHHHHHHHHhC-----CCeEEEEcCChhhHHHHHhC--------C----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKA-----GYKMAVHDVNCNVMKMFSDM--------G----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~-----G~~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
|.+++..|+++ +++|.+||+++++++..... + +..+++..+++++||+||+++|.+
T Consensus 41 ~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VViaag~~ 113 (472)
T 1u8x_X 41 TPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVG 113 (472)
T ss_dssp HHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCTT
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEEcCCCc
Confidence 44577788887 66899999999886553221 1 233467889999999999999884
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.012 Score=54.01 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=68.3
Q ss_pred ChHHHHHHHHhC--CCeE-EEEcCChhhHHHHHhC-CCC---CCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSDM-GVP---TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V-~~~dr~~~~~~~~~~~-g~~---~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||...+..|.+. +++| .++|+++++++.+.+. |.. .+.+.+++++ +.|+|++|+|+....+.+.. .+
T Consensus 35 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al 110 (438)
T 3btv_A 35 AIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVASHYEVVMP----LL 110 (438)
T ss_dssp TTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcHHHHHHHHH----HH
Confidence 567788888886 6775 5889999998887654 554 6789999986 68999999999866554442 22
Q ss_pred cCCC--CCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 72 QGGN--SVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 72 ~~~~--~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
+... ....+++++- .+..+.+++++.+..++
T Consensus 111 ~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~ 144 (438)
T 3btv_A 111 EFSKNNPNLKYLFVEWALACSLDQAESIYKAAAE 144 (438)
T ss_dssp HHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHT
T ss_pred HCCCCcccceeEEecCcccCCHHHHHHHHHHHHH
Confidence 2100 0002677774 45678888888887764
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0054 Score=53.66 Aligned_cols=78 Identities=21% Similarity=0.115 Sum_probs=53.0
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhH----HHHHhCCCCC-----C--CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVM----KMFSDMGVPT-----K--ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~----~~~~~~g~~~-----~--~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
|..+|+.|...|..|+++||+..+. +.+...-... + .++.+.++++|+||.+++.+.- ++.. +.
T Consensus 190 G~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~---vI~~--e~ 264 (320)
T 1edz_A 190 GRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENY---KFPT--EY 264 (320)
T ss_dssp HHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTC---CBCT--TT
T ss_pred HHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCcc---eeCH--HH
Confidence 8899999999999999999984433 2222110111 1 4678899999999999988632 2221 12
Q ss_pred ccCCCCCCCeEEEEcCCCC
Q 022237 71 LQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~ 89 (300)
.++|.+|||.+...
T Consensus 265 -----vk~GavVIDVgi~r 278 (320)
T 1edz_A 265 -----IKEGAVCINFACTK 278 (320)
T ss_dssp -----SCTTEEEEECSSSC
T ss_pred -----cCCCeEEEEcCCCc
Confidence 34568999988743
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0054 Score=52.59 Aligned_cols=83 Identities=7% Similarity=-0.065 Sum_probs=54.3
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CC--CCCCCHHHHh-hcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV--PTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~--~~~~~~~e~~-~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||.+++..|.+.|. +|++++|++++++++.+. +. ....+.++.. .++|+||-|+|....-...... .+.
T Consensus 131 ~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i~-~~~----- 204 (272)
T 3pwz_A 131 AVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTADLPPLP-ADV----- 204 (272)
T ss_dssp HHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCCC-GGG-----
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCCC-HHH-----
Confidence 57899999999996 899999999999887654 21 1111223332 6899999999886331110000 112
Q ss_pred CCCCeEEEEcCCCC
Q 022237 76 SVRPQLLIDSSTID 89 (300)
Q Consensus 76 ~~~~~ivid~st~~ 89 (300)
..++.+|+|+....
T Consensus 205 l~~~~~V~DlvY~P 218 (272)
T 3pwz_A 205 LGEAALAYELAYGK 218 (272)
T ss_dssp GTTCSEEEESSCSC
T ss_pred hCcCCEEEEeecCC
Confidence 23557999987753
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.014 Score=53.52 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=64.6
Q ss_pred ChH-HHHHHHHhC-CCeE-EEEcCChhhHHHHHhC-CCC-----CCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGF-RMASNLMKA-GYKM-AVHDVNCNVMKMFSDM-GVP-----TKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~-~la~~l~~~-G~~V-~~~dr~~~~~~~~~~~-g~~-----~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||. .++..|.+. +++| .++|+++++++.+.+. |.. .+.+.+++++ +.|+|++|+|+....+.+..
T Consensus 94 ~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~---- 169 (433)
T 1h6d_A 94 YALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIR---- 169 (433)
T ss_dssp HHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHH----
T ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhHHHHHHH----
Confidence 454 677777765 4665 5889999998877654 554 4678889887 79999999999865544432
Q ss_pred cccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 70 LLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
.++. +.+++++. .+....+.+++.+..++
T Consensus 170 al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~~ 199 (433)
T 1h6d_A 170 AFKA----GKHVMCEKPMATSVADCQRMIDAAKA 199 (433)
T ss_dssp HHHT----TCEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 2321 22466653 35677888888887765
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0064 Score=55.21 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=46.6
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHh-CCCCC--CCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPT--KETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~-~g~~~--~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||..+++.|...|. +|+++||++++++++.+ .|+.. ..++.+.+.++|+||.|+|.+..
T Consensus 178 iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~ 240 (404)
T 1gpj_A 178 MGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHP 240 (404)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSC
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCc
Confidence 68899999999998 89999999998865543 35432 24667788899999999987643
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.026 Score=48.34 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|.++|..|...|..|++.+++ +.++++.++++|+||.+++.+.- +. .+. .++|.
T Consensus 173 VG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~--~~~-----vk~Ga 227 (285)
T 3l07_A 173 VGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF----IT--ADM-----VKEGA 227 (285)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC--GGG-----SCTTC
T ss_pred hHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC----CC--HHH-----cCCCc
Confidence 3777777777777777777653 34778899999999999987632 21 122 34568
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
+|||.+..
T Consensus 228 vVIDvgi~ 235 (285)
T 3l07_A 228 VVIDVGIN 235 (285)
T ss_dssp EEEECCCE
T ss_pred EEEEeccc
Confidence 99997753
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.031 Score=47.91 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=44.5
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.++|..|...|..|++.+++ +.++++.+++||+||.+++.+.- +. .+. .++|.+
T Consensus 173 G~p~A~lL~~~gAtVtv~h~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~--~~~-----vk~Gav 227 (285)
T 3p2o_A 173 GRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNL----LR--SDM-----VKEGVI 227 (285)
T ss_dssp HHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHTTCSEEEECSSCTTC----BC--GGG-----SCTTEE
T ss_pred HHHHHHHHHHCCCeEEEEeCC--------------chhHHHHhhcCCEEEECCCCCCc----CC--HHH-----cCCCeE
Confidence 677777777777777777653 34778899999999999987632 21 122 356689
Q ss_pred EEEcCCC
Q 022237 82 LIDSSTI 88 (300)
Q Consensus 82 vid~st~ 88 (300)
|||.+..
T Consensus 228 VIDVgi~ 234 (285)
T 3p2o_A 228 VVDVGIN 234 (285)
T ss_dssp EEECCCE
T ss_pred EEEeccC
Confidence 9998763
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.009 Score=51.19 Aligned_cols=92 Identities=9% Similarity=0.118 Sum_probs=58.2
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhh---hhhcCCC-CcccCC
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVL---DVYNGPN-GLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~---~v~~~~~-~~l~~~ 74 (300)
||++++..|.+.|. +|++|||++++++.+.+. +.....+.. ..++|+||.|+|...... +.. ... ..+
T Consensus 130 aarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~~-~~~~~~l--- 203 (271)
T 1npy_A 130 MAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL-AFPKAFI--- 203 (271)
T ss_dssp THHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC-SSCHHHH---
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCCC-CCCHHHc---
Confidence 68899999999997 799999999998888654 332221222 468999999999873211 111 000 112
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 75 NSVRPQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 75 ~~~~~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
.++.+++|+.. .|..+ .+.+..++
T Consensus 204 --~~~~~v~DlvY-~P~~T-~ll~~A~~ 227 (271)
T 1npy_A 204 --DNASVAFDVVA-MPVET-PFIRYAQA 227 (271)
T ss_dssp --HHCSEEEECCC-SSSSC-HHHHHHHH
T ss_pred --CCCCEEEEeec-CCCCC-HHHHHHHH
Confidence 23478999876 34333 44444443
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.029 Score=48.43 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=44.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.++|+.|...|..|++++++ +.++.+.+++||+||.+++.+.- +. .+. .++|.+
T Consensus 178 G~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~--~~~-----vk~Gav 232 (301)
T 1a4i_A 178 GAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM----VK--GEW-----IKPGAI 232 (301)
T ss_dssp HHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC--GGG-----SCTTCE
T ss_pred HHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc----CC--HHH-----cCCCcE
Confidence 667777777777777777633 35788899999999999998732 21 122 245689
Q ss_pred EEEcCCCC
Q 022237 82 LIDSSTID 89 (300)
Q Consensus 82 vid~st~~ 89 (300)
|||.+...
T Consensus 233 VIDVgi~~ 240 (301)
T 1a4i_A 233 VIDCGINY 240 (301)
T ss_dssp EEECCCBC
T ss_pred EEEccCCC
Confidence 99988754
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.032 Score=50.78 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=64.6
Q ss_pred hHHHHHHHHhCC-CeEE--EEcCChhhHHHHHhC-CC---CCCCCHHHHhhc-------CCEEEEecCChhhhhhhhcCC
Q 022237 2 GFRMASNLMKAG-YKMA--VHDVNCNVMKMFSDM-GV---PTKETPFEVAEA-------SDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 2 G~~la~~l~~~G-~~V~--~~dr~~~~~~~~~~~-g~---~~~~~~~e~~~~-------adiVii~vp~~~~~~~v~~~~ 67 (300)
|...+..+...+ +++. ++|+++++++++.+. |+ ..+++.++.+++ .|+|++|+|+....+-+..
T Consensus 52 g~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~-- 129 (417)
T 3v5n_A 52 GAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKE-- 129 (417)
T ss_dssp HHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHH--
T ss_pred HHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHH--
Confidence 445566666655 5764 679999999887664 66 577899999876 8999999999866544432
Q ss_pred CCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 68 NGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
.++. +..++++-- +....+++++.+..++
T Consensus 130 --al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 130 --FLKR----GIHVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp --HHTT----TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred --HHhC----CCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 2321 225666643 5677888888877765
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0035 Score=53.76 Aligned_cols=84 Identities=10% Similarity=-0.000 Sum_probs=52.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CC--CC-CCCHHHHhh-cCCEEEEecCChhhhhhhhcCC-CCcccCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--PT-KETPFEVAE-ASDVVITMLPSSSHVLDVYNGP-NGLLQGG 74 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~--~~-~~~~~e~~~-~adiVii~vp~~~~~~~v~~~~-~~~l~~~ 74 (300)
||.+++..|++.|++|++|||++++++++.+. +. .. ..+.+++.+ ++|+||.|+|.... ..+. .. .+.+
T Consensus 130 ~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~-~~~~-~i~~~~l--- 204 (272)
T 1p77_A 130 ATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS-GGTA-SVDAEIL--- 204 (272)
T ss_dssp HHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---------CCCHHHH---
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCC-CCCC-CCCHHHc---
Confidence 58899999999999999999999998877643 11 11 123333323 89999999998743 1221 01 0112
Q ss_pred CCCCCeEEEEcCCCCHH
Q 022237 75 NSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 75 ~~~~~~ivid~st~~p~ 91 (300)
.++.+++|++.....
T Consensus 205 --~~~~~v~D~~y~p~~ 219 (272)
T 1p77_A 205 --KLGSAFYDMQYAKGT 219 (272)
T ss_dssp --HHCSCEEESCCCTTS
T ss_pred --CCCCEEEEeeCCCCc
Confidence 234688998885443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.023 Score=51.09 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=65.0
Q ss_pred hHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|..++..|.+. +++|. ++|+++++++++.+. |+..+.+.++++++ .|+|++|+|+....+.+.. .++.
T Consensus 15 ~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~----al~a--- 87 (387)
T 3moi_A 15 SVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVVQ----ASEQ--- 87 (387)
T ss_dssp HTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHHH----HHHT---
T ss_pred HHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHHH----HHHC---
Confidence 45567777765 55654 789999998877654 78888899999874 9999999999865544432 2321
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+.+++++-- +..+...+++.+..++
T Consensus 88 -Gk~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 88 -GLHIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp -TCEEEECSCCCSCHHHHHHHHHHHHH
T ss_pred -CCceeeeCCccCCHHHHHHHHHHHHH
Confidence 224666533 5667888888877765
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.02 Score=53.16 Aligned_cols=123 Identities=10% Similarity=0.091 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCCC--
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSL------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNY-- 236 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~-- 236 (300)
...+.+|++.|++.+..+.+.+|++.+.+++ ++|..++.++++.++ ..||+++..... +.....-.+.
T Consensus 314 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a---~~~~~~l~~l~~ 390 (482)
T 2pgd_A 314 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDA---FDRNPGLQNLLL 390 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHH---HHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHH---HhcCCChhhhhc
Confidence 3489999999999999999999999999883 899999999999887 567765422110 0000000011
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 022237 237 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 291 (300)
Q Consensus 237 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~ 291 (300)
++-| .+.......+.++..+-+.|+|+|.+.++...|+.-...-+...=+.+.-.
T Consensus 391 ~~~~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd 447 (482)
T 2pgd_A 391 DDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRD 447 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcchhHHHHHHh
Confidence 1212 123334567889999999999999999999988877666555444444433
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.012 Score=53.70 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=49.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC----CCH---HHH-hhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV-AEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~~---~e~-~~~adiVii~vp~~~~~~~v~ 64 (300)
+|..+++.|.+.|++|++.|+++++++.+.+.|.... +++ .++ ++++|+||++++++.....++
T Consensus 15 ~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~~i~ 86 (413)
T 3l9w_A 15 FGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLT 86 (413)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHHHHH
Confidence 4889999999999999999999999999988876431 222 222 578999999999885544343
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.036 Score=47.57 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=42.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.++|+.|...|..|++++++ +.++.+.++++|+||.+++.+. ++. .+. .++|.+
T Consensus 172 G~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~----lI~--~~~-----vk~Gav 226 (288)
T 1b0a_A 172 GRPMSMELLLAGCTTTVTHRF--------------TKNLRHHVENADLLIVAVGKPG----FIP--GDW-----IKEGAI 226 (288)
T ss_dssp HHHHHHHHHTTTCEEEEECSS--------------CSCHHHHHHHCSEEEECSCCTT----CBC--TTT-----SCTTCE
T ss_pred HHHHHHHHHHCCCeEEEEeCC--------------chhHHHHhccCCEEEECCCCcC----cCC--HHH-----cCCCcE
Confidence 666777777767677766533 2577888999999999999873 222 122 346689
Q ss_pred EEEcCC
Q 022237 82 LIDSST 87 (300)
Q Consensus 82 vid~st 87 (300)
|||.+.
T Consensus 227 VIDVgi 232 (288)
T 1b0a_A 227 VIDVGI 232 (288)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999876
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.034 Score=50.23 Aligned_cols=94 Identities=12% Similarity=0.206 Sum_probs=65.5
Q ss_pred ChHHHHHHHHhCC-CeEE--EEcCChhhHHHHHh-CCC---CCCCCHHHHhhc-------CCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAG-YKMA--VHDVNCNVMKMFSD-MGV---PTKETPFEVAEA-------SDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~--~~dr~~~~~~~~~~-~g~---~~~~~~~e~~~~-------adiVii~vp~~~~~~~v~~~ 66 (300)
||...+..+...+ +++. ++|+++++++.+.+ .|+ ..+.+.++.+++ .|+|++|+|+....+-+..
T Consensus 26 ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~- 104 (398)
T 3dty_A 26 IGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKA- 104 (398)
T ss_dssp SHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHH-
T ss_pred hHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHH-
Confidence 5667777777665 6765 57999999988765 476 577899999875 9999999999866554432
Q ss_pred CCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 67 PNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
.++. +..++++- -+....+++++.+..++
T Consensus 105 ---al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 134 (398)
T 3dty_A 105 ---ALEA----GLHVVCEKPLCFTVEQAENLRELSHK 134 (398)
T ss_dssp ---HHHT----TCEEEECSCSCSCHHHHHHHHHHHHH
T ss_pred ---HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 2321 22455542 24567788888877765
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.01 Score=51.20 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC------CCC--CC--CCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM------GVP--TK--ETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~------g~~--~~--~~~~e~~~~adiVii~vp~~ 57 (300)
+|++++..|++.|. +|+++||++++++++.+. +.. .. .++.+.++++|+||-|+|..
T Consensus 138 ~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~G 205 (283)
T 3jyo_A 138 VGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTT
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCC
Confidence 47889999999998 699999999998877542 111 22 36778889999999999865
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0073 Score=53.98 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhh-cCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAE-ASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~-~adiVii~vp~ 56 (300)
||..+|+.|.+.|++|+++|+++++++++.+. |+... +..+... +||+++.|...
T Consensus 184 VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~ 240 (364)
T 1leh_A 184 VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALG 240 (364)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCS
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchH
Confidence 68999999999999999999999998877664 65443 4445444 89999988633
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.012 Score=54.51 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=41.7
Q ss_pred hHHHHHHHHhC----CCeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKA----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~----G~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
|.+++..|++. |++|.+||+++++++.... .+ +..+++..+++++||+||+++|..
T Consensus 17 g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VIiaagv~ 88 (480)
T 1obb_A 17 SLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVG 88 (480)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEEECCCcc
Confidence 45667788754 8999999999988665322 11 233567788999999999999874
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0085 Score=52.77 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~~------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.++|..|+..|+ +|.++|+++++++. +... +.....+..+++++||+||++++.+
T Consensus 16 vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p 84 (326)
T 3pqe_A 16 VGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN 84 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence 68999999999997 89999999987764 4432 2222334457889999999998654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0071 Score=52.47 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=42.3
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHh----C--C--CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD----M--G--VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~----~--g--~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.++|..|+.+|+ +|.+||+++++++. +.. . . +..+++ .+++++||+||++.+.+
T Consensus 11 vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~~ 80 (294)
T 1oju_A 11 VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGLA 80 (294)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCCC
Confidence 68999999999998 99999999987641 211 1 1 122345 78899999999998654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.015 Score=44.97 Aligned_cols=58 Identities=7% Similarity=0.094 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC-hhhHHHHH---hCCCCC----CCC---HHHH-hhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMFS---DMGVPT----KET---PFEV-AEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~-~~~~~~~~---~~g~~~----~~~---~~e~-~~~adiVii~vp~~~ 58 (300)
+|..+++.|.+.|++|++.|++ +++.+.+. ..|... ..+ +.++ ++++|.||++++++.
T Consensus 14 vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (153)
T 1id1_A 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChH
Confidence 4889999999999999999998 46554443 233321 122 2333 678999999998874
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.025 Score=49.16 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=51.8
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCC--CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~--~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..+++.|.+. ++++. ++|+++++++. .|+.. ..++.+. .++|+|++|+|.....+.+.. .++
T Consensus 20 iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~~~----al~---- 87 (304)
T 3bio_A 20 IGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTALE----ILK---- 87 (304)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHHHH----HHT----
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHHHH----HHH----
Confidence 578888888874 57776 78999988765 45432 3344444 689999999998855543331 232
Q ss_pred CCCeEEEEcCCC---CHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSSTI---DPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~st~---~p~~~~~~~~~~~~ 102 (300)
.|+.|++.+.. .+...+++.+..++
T Consensus 88 -aG~~Vi~ekP~~a~~~~~~~~l~~~a~~ 115 (304)
T 3bio_A 88 -KGICTADSFDIHDGILALRRSLGDAAGK 115 (304)
T ss_dssp -TTCEEEECCCCGGGHHHHHHHHHHHHHH
T ss_pred -cCCeEEECCCCCCCCHHHHHHHHHHHHh
Confidence 23566766543 44555666666554
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.019 Score=53.05 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=59.2
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CCC----CCC---CHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GVP----TKE---TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~-g~~----~~~---~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||++++..|++. |++|+++||++++++.+.+. +.. ... ++.++++++|+||.|+|.... ..+.. ..+
T Consensus 34 iG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~-~~v~~---a~l 109 (467)
T 2axq_A 34 VAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH-PNVVK---SAI 109 (467)
T ss_dssp THHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH-HHHHH---HHH
T ss_pred HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh-HHHHH---HHH
Confidence 689999999998 78999999999998887653 321 111 345667899999999987632 22221 112
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
. .+..++|.+...|.. ..+.+..+
T Consensus 110 ~-----~g~~vvd~~~~~p~~-~~Ll~~Ak 133 (467)
T 2axq_A 110 R-----TKTDVVTSSYISPAL-RELEPEIV 133 (467)
T ss_dssp H-----HTCEEEECSCCCHHH-HHHHHHHH
T ss_pred h-----cCCEEEEeecCCHHH-HHHHHHHH
Confidence 1 235677876656654 33333333
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.016 Score=53.22 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=40.9
Q ss_pred hHHHHHHHHhC-----CCeEEEEcCCh--hhHHHHH--------hCC----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKA-----GYKMAVHDVNC--NVMKMFS--------DMG----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~-----G~~V~~~dr~~--~~~~~~~--------~~g----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
|.+++..|+++ +++|.+||+++ ++++... ..+ +..+.+..+++++||+||+++|.+
T Consensus 20 ~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~VVitagv~ 94 (450)
T 1s6y_A 20 TPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVG 94 (450)
T ss_dssp HHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEEEEcCCCC
Confidence 56677778874 56899999999 8765421 112 223467789999999999999865
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.028 Score=46.52 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC-CC-----CCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-PT-----KETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~-~~-----~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|++.|++|++.+|++++.+.+...++ .. ..+..+++.++|+||.+..
T Consensus 33 iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 33 VARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 5899999999999999999999999888776544 21 1233444555566655553
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.013 Score=51.62 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHH----HHHh------CCCCC--CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMK----MFSD------MGVPT--KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~----~~~~------~g~~~--~~~~~e~~~~adiVii~vp~~ 57 (300)
||.+++..|+..|+ +|.+||+++++++ ++.. ..... +.+. +++++||+||++.+.+
T Consensus 18 vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag~p 86 (324)
T 3gvi_A 18 IGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAGVP 86 (324)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccCcC
Confidence 68999999999999 9999999998764 2222 12222 3444 8899999999998644
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.05 Score=48.20 Aligned_cols=92 Identities=14% Similarity=0.245 Sum_probs=62.5
Q ss_pred hHH-HHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~-la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|.. .+..+.+. +++|. ++|++++++++ ...+...+.+.++.+++ .|+|++|+|+....+-+.. .++.
T Consensus 19 g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a--- 90 (352)
T 3kux_A 19 SKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQS----ALAA--- 90 (352)
T ss_dssp HHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHH----HHHT---
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHC---
Confidence 444 45556655 56765 78999998762 11256677899999875 8999999999866554432 2322
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+.+++++-- +..+...+++.+..++
T Consensus 91 -GkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 91 -GKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp -TCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred -CCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 225777655 5778888888887765
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.054 Score=46.41 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=43.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|.++|..|...|..|++.++. +.++++.++++|+||.+++.+.- +. .+. .++|.+
T Consensus 174 G~plA~lL~~~gAtVtv~hs~--------------T~~L~~~~~~ADIVI~Avg~p~~----I~--~~~-----vk~Gav 228 (286)
T 4a5o_A 174 GRPMALELLLGGCTVTVTHRF--------------TRDLADHVSRADLVVVAAGKPGL----VK--GEW-----IKEGAI 228 (286)
T ss_dssp HHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHTCSEEEECCCCTTC----BC--GGG-----SCTTCE
T ss_pred HHHHHHHHHHCCCeEEEEeCC--------------CcCHHHHhccCCEEEECCCCCCC----CC--HHH-----cCCCeE
Confidence 666677777666666666542 24778899999999999987632 21 122 346689
Q ss_pred EEEcCCCC
Q 022237 82 LIDSSTID 89 (300)
Q Consensus 82 vid~st~~ 89 (300)
|||.+...
T Consensus 229 VIDvgi~~ 236 (286)
T 4a5o_A 229 VIDVGINR 236 (286)
T ss_dssp EEECCSCS
T ss_pred EEEecccc
Confidence 99987643
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.013 Score=53.84 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=42.8
Q ss_pred hHHHHHHHHh----CCCeEEEEcCChhhHHHHHhC---------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMK----AGYKMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~----~G~~V~~~dr~~~~~~~~~~~---------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
|.+++..|++ .| +|.+||+++++++..... .+..++++++++++||+||++++..
T Consensus 19 g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~airvG 86 (450)
T 3fef_A 19 ARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPG 86 (450)
T ss_dssp HHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCCSS
T ss_pred HHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEeccccC
Confidence 4688888886 56 999999999887654321 1345678899999999999999753
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.076 Score=44.56 Aligned_cols=84 Identities=12% Similarity=0.134 Sum_probs=52.9
Q ss_pred ChHHHHHHHHhCCCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+++.+.+.++++. ++|++++. ..|+...++++++. ++|+||-+.+. ..+.+.+. ++ .+-
T Consensus 14 MG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~~~~~-----l~----~g~ 77 (243)
T 3qy9_A 14 MNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNP-NLLFPLLD-----ED----FHL 77 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCH-HHHHHHHT-----SC----CCC
T ss_pred HHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCCh-HHHHHHHH-----Hh----cCC
Confidence 79999999998877755 47988763 35777788888887 99999865533 35455553 22 122
Q ss_pred eEEEEcCCCCHHHHHHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAV 100 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~ 100 (300)
.+|+-+++.+++...++.+..
T Consensus 78 ~vVigTTG~s~e~~~~l~~aa 98 (243)
T 3qy9_A 78 PLVVATTGEKEKLLNKLDELS 98 (243)
T ss_dssp CEEECCCSSHHHHHHHHHHHT
T ss_pred ceEeCCCCCCHHHHHHHHHHH
Confidence 466544444444444554443
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.061 Score=49.31 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=64.6
Q ss_pred ChHHHHHHHHhC-CCeE-EEEcCChhhHHHHHh----CC---CCCCC----CHHHHhh--cCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD----MG---VPTKE----TPFEVAE--ASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V-~~~dr~~~~~~~~~~----~g---~~~~~----~~~e~~~--~adiVii~vp~~~~~~~v~~ 65 (300)
||...+..|.+. |++| .++|+++++++.+.+ .| ..... +.+++++ +.|+|++|+|+....+.+..
T Consensus 31 ~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~ 110 (444)
T 2ixa_A 31 RGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVA 110 (444)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 466777778764 6675 588999999887654 34 34566 8999987 58999999999866554442
Q ss_pred CCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 66 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
.++. +.+++++- -+....+++++.+..++
T Consensus 111 ----al~a----GkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 111 ----AMKA----GKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp ----HHHT----TCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred ----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 2321 22466653 24567788888877765
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.036 Score=49.68 Aligned_cols=94 Identities=11% Similarity=0.237 Sum_probs=60.9
Q ss_pred hHHHHHHHHhC--CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhh---hhhhcCCCCcccCC
Q 022237 2 GFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHV---LDVYNGPNGLLQGG 74 (300)
Q Consensus 2 G~~la~~l~~~--G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~---~~v~~~~~~~l~~~ 74 (300)
|...+..+.+. ++++. ++|+++++++++.+. |+...+|.++.+++.|+|++|+|+.... .++.. ..++.
T Consensus 18 g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~~a~---~al~a- 93 (372)
T 4gmf_A 18 GEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQLAR---HFLAR- 93 (372)
T ss_dssp THHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHHHHH---HHHHT-
T ss_pred HHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHHHHH---HHHHc-
Confidence 44455555554 46765 679999999887654 8888889999999999999999987431 11211 12221
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhh
Q 022237 75 NSVRPQLLIDSSTIDPQTSRNISAAVSNC 103 (300)
Q Consensus 75 ~~~~~~ivid~st~~p~~~~~~~~~~~~~ 103 (300)
+..++++ .-..+.+++++.+..++.
T Consensus 94 ---GkhVl~E-KPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 94 ---GVHVIQE-HPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp ---TCEEEEE-SCCCHHHHHHHHHHHHHH
T ss_pred ---CCcEEEe-cCCCHHHHHHHHHHHHHc
Confidence 1144454 446678888888777653
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.037 Score=50.30 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=56.0
Q ss_pred hHHHHHHHHhCCCeEEEEcCCh------hhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNC------NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~------~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
|.+-|.+|..+|.+|++--|.. ...+.+.+.|... .+..|+++.+|+|++.+||. .-.+++..+.+.+
T Consensus 49 G~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v-~~~~eA~~~ADvV~~L~PD~-~q~~vy~~I~p~l---- 122 (491)
T 3ulk_A 49 GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVVRTVQPLM---- 122 (491)
T ss_dssp HHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEE-EEHHHHGGGCSEEEECSCGG-GHHHHHHHHGGGS----
T ss_pred hHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEe-cCHHHHHHhCCEEEEeCChh-hHHHHHHHHHhhC----
Confidence 6788999999999999887732 3456677778776 47999999999999999997 4455665433333
Q ss_pred CCCCeEEEE
Q 022237 76 SVRPQLLID 84 (300)
Q Consensus 76 ~~~~~ivid 84 (300)
++|+++.=
T Consensus 123 -k~G~~L~f 130 (491)
T 3ulk_A 123 -KDGAALGY 130 (491)
T ss_dssp -CTTCEEEE
T ss_pred -CCCCEEEe
Confidence 44556654
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.015 Score=50.29 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=60.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||...++.+.+.|++ .++..||.+. ++ ..|.....+.+|+.+ .+|++++++|.+ ...+++.+ .++. .
T Consensus 19 ~G~~~~~~l~~~g~~-~V~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~~e---a~~~---G 88 (288)
T 2nu8_A 19 QGTFHSEQAIAYGTK-MVGGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSILE---AIDA---G 88 (288)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHHHH---HHHT---T
T ss_pred HHHHHHHHHHHCCCe-EEEEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHHHH---HHHC---C
Confidence 578888999888998 4455555432 11 246777889999987 899999999998 54555543 2221 1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhh
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNC 103 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~ 103 (300)
.+.+|+-+++......+++.+..++.
T Consensus 89 i~~iVi~t~G~~~~~~~~l~~~A~~~ 114 (288)
T 2nu8_A 89 IKLIITITEGIPTLDMLTVKVKLDEA 114 (288)
T ss_dssp CSEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 11344444455666667777776653
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.12 Score=46.01 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=63.7
Q ss_pred HHHHHHHhCCCeEE-EEcCChhhHHHHHhC-C-CCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 4 RMASNLMKAGYKMA-VHDVNCNVMKMFSDM-G-VPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 4 ~la~~l~~~G~~V~-~~dr~~~~~~~~~~~-g-~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
.++..+...+.+|. ++|+++++++++.+. | ...+.+.++.+++ .|+|++|+|+....+-+.. .++. +
T Consensus 41 ~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~----al~a----G 112 (361)
T 3u3x_A 41 GQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIR----AMQH----G 112 (361)
T ss_dssp HHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHHH----HHHT----T
T ss_pred HHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHC----C
Confidence 45566666788855 789999999888665 4 5667899999875 8999999999866554432 2321 2
Q ss_pred CeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
..++++-- +....+++++.+..++
T Consensus 113 khVl~EKPla~~~~ea~~l~~~a~~ 137 (361)
T 3u3x_A 113 KDVLVDKPGMTSFDQLAKLRRVQAE 137 (361)
T ss_dssp CEEEEESCSCSSHHHHHHHHHHHHT
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 25666533 4567778888777654
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.061 Score=45.96 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=42.3
Q ss_pred hHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 2 GFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 2 G~~la~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
|.++|+.|... |..|++++++. .++.+.++++|+||.+++.+.- +. .+.+ ++|
T Consensus 171 G~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I~--~~~v-----k~G 225 (281)
T 2c2x_A 171 GRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL----LT--ADMV-----RPG 225 (281)
T ss_dssp HHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC----BC--GGGS-----CTT
T ss_pred HHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc----cC--HHHc-----CCC
Confidence 66666666666 56666665432 5788889999999999998732 21 1222 456
Q ss_pred eEEEEcCCC
Q 022237 80 QLLIDSSTI 88 (300)
Q Consensus 80 ~ivid~st~ 88 (300)
.+|||.+..
T Consensus 226 avVIDVgi~ 234 (281)
T 2c2x_A 226 AAVIDVGVS 234 (281)
T ss_dssp CEEEECCEE
T ss_pred cEEEEccCC
Confidence 899998763
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.029 Score=49.55 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=56.0
Q ss_pred CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC--
Q 022237 13 GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-- 86 (300)
Q Consensus 13 G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s-- 86 (300)
+++|. ++|+++++.+.+.+. +...+++.++++++ .|+|++|+|+....+.+.. .++. +..++++ .
T Consensus 28 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a----Gk~Vl~E-KP~ 98 (345)
T 3f4l_A 28 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKR----ALEA----GKNVLVE-KPF 98 (345)
T ss_dssp TEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHHHH----HHHT----TCEEEEC-SSS
T ss_pred CeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHHHH----HHHc----CCcEEEe-CCC
Confidence 56766 889999887554443 56677899999876 8999999999866554432 2321 2234444 4
Q ss_pred CCCHHHHHHHHHHHhh
Q 022237 87 TIDPQTSRNISAAVSN 102 (300)
Q Consensus 87 t~~p~~~~~~~~~~~~ 102 (300)
+..+.+++++.+..++
T Consensus 99 a~~~~e~~~l~~~a~~ 114 (345)
T 3f4l_A 99 TPTLAQAKELFALAKS 114 (345)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5677888888887765
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.016 Score=50.16 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=62.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||..+++.+.+.|++ .+|..||.+. +++ .|.....+++++.+ .+|++++++|.. .+.+++.+ .++. .
T Consensus 25 ~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i--~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v~e---a~~~---G 94 (294)
T 2yv1_A 25 QGSFHTKKMLECGTK-IVGGVTPGKGGQNV--HGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAVFE---AIDA---G 94 (294)
T ss_dssp HHHHHHHHHHHTTCC-EEEEECTTCTTCEE--TTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHHHH---HHHT---T
T ss_pred HHHHHHHHHHhCCCe-EEEEeCCCCCCceE--CCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHHHH---HHHC---C
Confidence 577889999999998 6666666643 222 47777889999988 899999999887 55555543 2221 1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhh
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVSNC 103 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~~~ 103 (300)
-..+|+-+++.+....+++.+..++.
T Consensus 95 i~~vVi~t~G~~~~~~~~l~~~A~~~ 120 (294)
T 2yv1_A 95 IELIVVITEHIPVHDTMEFVNYAEDV 120 (294)
T ss_dssp CSEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 11255545566666677777776653
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.011 Score=50.81 Aligned_cols=55 Identities=15% Similarity=-0.002 Sum_probs=41.4
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCC-CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMG-VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g-~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|++++..|.+.|. +|+++||++++++++.+.- .....++.+ + ++|+||-|+|..
T Consensus 133 aaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~G 189 (282)
T 3fbt_A 133 AARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKG 189 (282)
T ss_dssp THHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccC
Confidence 57899999999998 8999999999998886531 111112223 4 899999999875
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.088 Score=46.86 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=60.4
Q ss_pred hHH-HHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~-la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
|.. .+..+.+. +++|. ++|++++++.+. ..+...+.+.+++++ +.|+|++|+|+....+.+.. .++.
T Consensus 19 g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~----al~a--- 90 (364)
T 3e82_A 19 GKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-LPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARL----ALNA--- 90 (364)
T ss_dssp HHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-CTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHH----HHHT---
T ss_pred HHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-CCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHC---
Confidence 444 44555554 66765 789999887532 125667789999987 78999999999866554442 2321
Q ss_pred CCCeEEEEcC--CCCHHHHHHHHHHHhh
Q 022237 77 VRPQLLIDSS--TIDPQTSRNISAAVSN 102 (300)
Q Consensus 77 ~~~~ivid~s--t~~p~~~~~~~~~~~~ 102 (300)
+..++++ . +..+.+++++.+..++
T Consensus 91 -Gk~Vl~E-KPla~~~~e~~~l~~~a~~ 116 (364)
T 3e82_A 91 -GKHVVVD-KPFTLDMQEARELIALAEE 116 (364)
T ss_dssp -TCEEEEC-SCSCSSHHHHHHHHHHHHH
T ss_pred -CCcEEEe-CCCcCCHHHHHHHHHHHHH
Confidence 2245544 4 5677888888887765
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.071 Score=46.99 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=63.5
Q ss_pred hHHHHHHHHhC--CCeE-EEEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCC
Q 022237 2 GFRMASNLMKA--GYKM-AVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGG 74 (300)
Q Consensus 2 G~~la~~l~~~--G~~V-~~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~ 74 (300)
|...+..|.+. ++++ .++|+++++++++.+. |. ..+++.++.++ +.|+|++|+|+....+-+.. .++.
T Consensus 31 g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a- 105 (340)
T 1zh8_A 31 RELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEK----ALRK- 105 (340)
T ss_dssp HHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHH----HHHT-
T ss_pred HHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHH----HHHC-
Confidence 45567777765 4565 5789999999887664 65 56789999986 58999999999865443332 2321
Q ss_pred CCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 75 NSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 75 ~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-- +....+++++.+..++
T Consensus 106 ---GkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 106 ---GVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp ---TCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred ---CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 225666532 3567778888777654
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.011 Score=50.92 Aligned_cols=82 Identities=9% Similarity=-0.065 Sum_probs=52.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CC----C-----CCCCHHHHhhcCCEEEEecCChhhh--hhhhcCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV----P-----TKETPFEVAEASDVVITMLPSSSHV--LDVYNGPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~----~-----~~~~~~e~~~~adiVii~vp~~~~~--~~v~~~~~ 68 (300)
||.+++..|++.| +|+++||++++++.+.+. +. . ...+..+.+.++|+||.++|....- ........
T Consensus 139 iG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~~~~~~~~~~~~ 217 (287)
T 1nvt_A 139 AARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKA 217 (287)
T ss_dssp HHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCS
T ss_pred HHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCCCCCCCCCCCCH
Confidence 5899999999999 999999999888776432 00 0 1112244567899999999876321 11100000
Q ss_pred CcccCCCCCCCeEEEEcCCC
Q 022237 69 GLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 69 ~~l~~~~~~~~~ivid~st~ 88 (300)
.. ..++.+++|++..
T Consensus 218 ~~-----l~~~~~v~Dv~y~ 232 (287)
T 1nvt_A 218 EK-----LREDMVVMDLIYN 232 (287)
T ss_dssp TT-----CCSSSEEEECCCS
T ss_pred HH-----cCCCCEEEEeeeC
Confidence 11 3355799999874
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.03 Score=49.09 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=42.0
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHH----HHHhC------CCCCC-CCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMK----MFSDM------GVPTK-ETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~----~~~~~------g~~~~-~~~~e~~~~adiVii~vp~~ 57 (300)
||.+++..|+..|+ +|.++|+++++++ ++.+. ..... ++..+++++||+||++.+.+
T Consensus 16 vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~p 84 (321)
T 3p7m_A 16 IGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVP 84 (321)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCcC
Confidence 68999999999998 9999999998764 23221 22222 23357899999999998554
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.045 Score=47.92 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=37.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC-----CCCCCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~~-----g~~~~~~~~e~~~~adiVii~vp~~~ 58 (300)
+|.+++..|+..|+ +|.++|+++++++. +.+. ..+...+..+++++||+||++++.+.
T Consensus 18 vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~ 86 (318)
T 1y6j_A 18 VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 86 (318)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 48899999999998 89999999876542 2221 11112234677999999999998763
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.027 Score=48.68 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=60.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||..+++.+.+.|++ .++..+|.+..+ .-.|.....+++|+.+ .+|++++++|.. .+.+++.+ ..+. .-
T Consensus 19 ~G~~~~~~l~~~g~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~-~~~~~~~e---a~~~---Gi 89 (288)
T 1oi7_A 19 EGQFHTKQMLTYGTK-IVAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAP-AAADAALE---AAHA---GI 89 (288)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHH-HHHHHHHH---HHHT---TC
T ss_pred HHHHHHHHHHHcCCe-EEEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCHH-HHHHHHHH---HHHC---CC
Confidence 578899999988998 444444443110 1247777889999988 899999999887 55566543 2221 11
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
..+|+-+++......+++.+..++
T Consensus 90 ~~vVi~t~G~~~~~~~~l~~~a~~ 113 (288)
T 1oi7_A 90 PLIVLITEGIPTLDMVRAVEEIKA 113 (288)
T ss_dssp SEEEECCSCCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Confidence 135555555666666677776665
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.035 Score=51.10 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-C-CC----CCC---CHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-VP----TKE---TPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g-~~----~~~---~~~e~~~~adiVii~vp~~ 57 (300)
||++++..|++.|++|+++||++++++.+.+. + .. ... +..++++++|+||.|+|..
T Consensus 14 iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 14 VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp THHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred HHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 68999999999999999999999988877543 1 11 122 3346678999999999875
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.01 Score=49.34 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=40.9
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCC-------CCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGV-------PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g~-------~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+++++.|++.| ++|++.+|++++...+...++ ....+..++++++|+||.+....
T Consensus 35 iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~ 99 (236)
T 3qvo_A 35 IARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGE 99 (236)
T ss_dssp HHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCST
T ss_pred HHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCC
Confidence 5899999999999 899999999987765433322 11123345677888888877543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.023 Score=49.70 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhCC------CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDMG------VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~g------~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||++++..|+..|. +|.++|+++++++.. .... .+...+..+++++||+||++.|.+
T Consensus 17 vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 17 VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 68999999998875 899999998765432 2111 111234567889999999998766
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.032 Score=48.79 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=40.0
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCC--hhhHHH----HHh------CCCCCC-CCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVN--CNVMKM----FSD------MGVPTK-ETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~--~~~~~~----~~~------~g~~~~-~~~~e~~~~adiVii~vp~~ 57 (300)
||.++|..|+.+|+ +|.+||++ +++++. +.. ...+.. ++..+++++||+||++.+.+
T Consensus 19 vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaag~p 89 (315)
T 3tl2_A 19 TGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITAGIA 89 (315)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeCCCC
Confidence 68999999999999 99999999 444322 111 122222 23357789999999998544
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.037 Score=45.24 Aligned_cols=56 Identities=7% Similarity=-0.033 Sum_probs=38.3
Q ss_pred ChHHHHHHHH-hCCCeEEEEcCChh-hHHHHHhCC--C-------CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLM-KAGYKMAVHDVNCN-VMKMFSDMG--V-------PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~-~~G~~V~~~dr~~~-~~~~~~~~g--~-------~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++++.|+ +.|++|++.+|+++ +++.+...+ + ....+..++++++|+||.+...
T Consensus 17 iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 17 IAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp HHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred HHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 5899999999 89999999999998 877764221 1 1111233455666777666643
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.034 Score=48.59 Aligned_cols=57 Identities=5% Similarity=-0.023 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCC---hhhHHHHHhC-----CC--C--CCCC---HHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVN---CNVMKMFSDM-----GV--P--TKET---PFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~---~~~~~~~~~~-----g~--~--~~~~---~~e~~~~adiVii~vp~~ 57 (300)
+|++++..|++.|. +|++++|+ .++++++.+. +. . ...+ +.+.+.++|+||-|+|..
T Consensus 165 ~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~G 237 (315)
T 3tnl_A 165 AATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVG 237 (315)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTT
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCC
Confidence 47899999999998 89999999 8888776542 21 1 1122 345678999999999865
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.023 Score=47.13 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=43.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHH---HH-hhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---EV-AEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---e~-~~~adiVii~vp~~~~ 59 (300)
+|..+++.|.+.|+ |+++|+++++++.+. .|... ..+.+ ++ ++++|.||+++|++..
T Consensus 20 ~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~ 84 (234)
T 2aef_A 20 STLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE 84 (234)
T ss_dssp HHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHH
T ss_pred HHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHH
Confidence 47889999999999 999999999988877 55422 22322 23 6789999999998743
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.026 Score=49.50 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhC-CCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V-~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
||+.+++.|.+. +.++ .++|+++++ .+. .|+....++++++.++|+|++|+|.....+.+.
T Consensus 14 mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~ 76 (320)
T 1f06_A 14 LGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA 76 (320)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH
Confidence 688899999876 4564 578999665 222 354445677777788999999999875555443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.027 Score=49.23 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=42.3
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHH----HHHh------CCCCCC-CCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSD------MGVPTK-ETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~----~~~~------~g~~~~-~~~~e~~~~adiVii~vp~~ 57 (300)
||.+++..|+..|+ +|.++|+++++++ ++.. ...... .+..+++++||+||++.+.+
T Consensus 11 vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 11 VGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 68999999999887 8999999998764 2222 122222 35678899999999998665
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.034 Score=49.56 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=42.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC----C--CCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----V--PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g----~--~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||+.+++.|++ .++|.++|++.++++++.+.. + ....++.+.++++|+||.|+|..
T Consensus 27 vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 27 IGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp HHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 57888888875 589999999999998886542 1 11223456788999999999876
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.031 Score=48.47 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=61.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH-HHHHhCCCCCCCCHHHHhh--c-CCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--A-SDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~~~e~~~--~-adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
||..+++.+.+.|++ .++..||.+. ++. .|.....+++++.+ . +|++++++|.+ .+.+++.+ ..+.
T Consensus 25 ~G~~~~~~l~~~g~~-~v~~VnP~~~g~~i--~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v~e---a~~~--- 94 (297)
T 2yv2_A 25 EGSFHAKAMLEYGTK-VVAGVTPGKGGSEV--HGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAVYE---AVDA--- 94 (297)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTCEE--TTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHHHH---HHHT---
T ss_pred HHHHHHHHHHhCCCc-EEEEeCCCCCCceE--CCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHHHH---HHHC---
Confidence 577888999988998 5566666542 121 47778889999887 5 99999999887 55556543 2221
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhh
Q 022237 77 VRPQLLIDSSTIDPQTSRNISAAVSNC 103 (300)
Q Consensus 77 ~~~~ivid~st~~p~~~~~~~~~~~~~ 103 (300)
.-..+|+-+++......+++.+..++.
T Consensus 95 Gi~~vVi~t~G~~~~~~~~l~~~A~~~ 121 (297)
T 2yv2_A 95 GIRLVVVITEGIPVHDTMRFVNYARQK 121 (297)
T ss_dssp TCSEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 111255545566666667777776653
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.04 Score=48.37 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=42.9
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHH----HHHhC-----CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~----~~~~~-----g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.++|..|+..|+ +|.++|+++++++ ++... ......+..+++++||+||++...+
T Consensus 20 vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~ 87 (326)
T 3vku_A 20 VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCC
Confidence 58999999999887 8999999998775 23221 2233345567899999999998654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.046 Score=47.63 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHH----Hh------CCCCC--CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SD------MGVPT--KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~----~~------~g~~~--~~~~~e~~~~adiVii~vp~~ 57 (300)
||.+++..|+..|+ +|.++|+++++++.. .. ...+. +.+. +++++||+||++.+.+
T Consensus 10 vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~ 78 (308)
T 2d4a_B 10 VGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG 78 (308)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 68899999998888 699999998876432 11 12222 2454 7899999999997665
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.13 Score=46.97 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhC-CCeE-EEEcCChhhHHHHHhC--C----------------------CCCCCCHHHHhh--cCCEEEE
Q 022237 1 MGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDM--G----------------------VPTKETPFEVAE--ASDVVIT 52 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V-~~~dr~~~~~~~~~~~--g----------------------~~~~~~~~e~~~--~adiVii 52 (300)
||+.++..+.+. +.+| .++|+++++++.+.+. | ...+++.++.++ +.|+|++
T Consensus 34 iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL~d~dIDaVvi 113 (446)
T 3upl_A 34 MGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLILSNPLIDVIID 113 (446)
T ss_dssp HHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHhcCCCCCEEEE
Confidence 567777777653 4554 4779999998877532 3 235678889887 5899999
Q ss_pred ecCChh
Q 022237 53 MLPSSS 58 (300)
Q Consensus 53 ~vp~~~ 58 (300)
|+|.+.
T Consensus 114 aTp~p~ 119 (446)
T 3upl_A 114 ATGIPE 119 (446)
T ss_dssp CSCCHH
T ss_pred cCCChH
Confidence 998863
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.03 Score=48.67 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=37.7
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhh---HHHHHhC---CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNV---MKMFSDM---GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~---~~~~~~~---g~~~~~~~~e~~~~adiVii~v 54 (300)
||..++..|+..|+ +|.++|++++. +.++... .+..+.+. +++++||+||+++
T Consensus 25 vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aa 85 (303)
T 2i6t_A 25 LGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTV 85 (303)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcC
Confidence 68899999999999 99999999852 2233221 22334566 7789999999997
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.21 Score=43.05 Aligned_cols=41 Identities=7% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 37 KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 37 ~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
+.++.+..++|||||.++..+.-+. .+. .++|.+|||.+..
T Consensus 213 T~dl~~~~~~ADIvV~A~G~p~~i~------~d~-----vk~GavVIDVGin 253 (303)
T 4b4u_A 213 TQNLPELVKQADIIVGAVGKAELIQ------KDW-----IKQGAVVVDAGFH 253 (303)
T ss_dssp CSSHHHHHHTCSEEEECSCSTTCBC------GGG-----SCTTCEEEECCCB
T ss_pred CCCHHHHhhcCCeEEeccCCCCccc------ccc-----ccCCCEEEEecee
Confidence 3577888999999999998873322 112 3567899998864
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.16 Score=44.99 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=58.7
Q ss_pred HHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 5 MASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 5 la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
.+..+.+. +++|. ++|++++++.+ .. +...+.+.++.++ +.|+|++|+|+....+.+.. .++. +.
T Consensus 21 ~~~~l~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a----Gk 90 (358)
T 3gdo_A 21 HGPLLDVLDEYQISKIMTSRTEEVKR--DFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMA----CIQA----GK 90 (358)
T ss_dssp THHHHTTCTTEEEEEEECSCHHHHHH--HCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHH----HHHT----TC
T ss_pred HHHHHhhCCCeEEEEEEcCCHHHHHh--hCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHH----HHHc----CC
Confidence 34555554 56764 78999987432 23 5667789999987 78999999999866554442 2321 22
Q ss_pred eEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
.++++-- +.....++++.+..++
T Consensus 91 hVl~EKPla~~~~e~~~l~~~a~~ 114 (358)
T 3gdo_A 91 HVVMEKPMTATAEEGETLKRAADE 114 (358)
T ss_dssp EEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eEEEecCCcCCHHHHHHHHHHHHH
Confidence 5666543 5667888888877765
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.28 Score=44.81 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCeEEEEcCCh-hhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 3 FRMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
..+++.|.+.|.+|.+||... +............+.++.++++++|.|++++..+ +.+.+ + .++++
T Consensus 356 ~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~h~-ef~~l--------d----~~~~v 422 (444)
T 3vtf_A 356 VEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATAWP-QYEGL--------D----YRGKV 422 (444)
T ss_dssp HHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSCCG-GGGGS--------C----CTTCE
T ss_pred HHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccCCH-HHhCC--------C----cCCCE
Confidence 457899999999999999763 2233333334566789999999999999999887 54432 1 12379
Q ss_pred EEEcCCCC
Q 022237 82 LIDSSTID 89 (300)
Q Consensus 82 vid~st~~ 89 (300)
|+|+-++.
T Consensus 423 v~D~Rni~ 430 (444)
T 3vtf_A 423 VVDGRYVK 430 (444)
T ss_dssp EEESSCCG
T ss_pred EEECCCCC
Confidence 99987764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.096 Score=46.31 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC-----CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~~-----g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..++..|. +|.++|+++++++. +... ......+..+++++||+||++...+
T Consensus 20 VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~p 87 (343)
T 3fi9_A 20 IGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAP 87 (343)
T ss_dssp HHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC--
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCCC
Confidence 47889999998884 89999999887653 3331 2233467888899999999997543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=93.44 E-value=0.029 Score=49.35 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=41.0
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC-------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~-------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.++|..|+..|+ +|.++|+++++++.. ... ....+.+.++ +++||+||++...+
T Consensus 32 vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~p 100 (330)
T 3ldh_A 32 VGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGAR 100 (330)
T ss_dssp HHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCCC
Confidence 68999999999997 899999998876432 211 1122345554 89999999997554
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.32 Score=42.38 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=62.4
Q ss_pred ChHHHHHHHHhCCCeE-EEEcCChhhHHHHHhC--CCCCCCCHHHHh-----------hcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVA-----------EASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V-~~~dr~~~~~~~~~~~--g~~~~~~~~e~~-----------~~adiVii~vp~~~~~~~v~~~ 66 (300)
||...+..|.+.+.++ .++|+++++. .+.+. +....++.++.+ .+.|+|++|+|+....+-+..
T Consensus 15 i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~- 92 (318)
T 3oa2_A 15 IAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAA- 92 (318)
T ss_dssp SHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHH-
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHH-
Confidence 5667788888888775 4789998874 33332 455677888876 478999999999866544432
Q ss_pred CCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 67 PNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
.++. +.+++++-- +..+.+.+++.+..++
T Consensus 93 ---al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 122 (318)
T 3oa2_A 93 ---GLRL----GCDVICEKPLVPTPEMLDQLAVIERE 122 (318)
T ss_dssp ---HHHT----TCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred ---HHHC----CCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 2221 224666532 4677888888877765
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.2 Score=44.76 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=55.5
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCC----hhhH--------HHHHhC-C-CCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVN----CNVM--------KMFSDM-G-VPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~----~~~~--------~~~~~~-g-~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
+|..+|+.|...|. +|+++||+ .++. +.+.+. + .....++.|+++++|++|-+.....-.++.+.
T Consensus 203 AG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sap~l~t~emVk 282 (388)
T 1vl6_A 203 AGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKPEWIK 282 (388)
T ss_dssp HHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSCSSCSCHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCCCCccCHHHHH
Confidence 47889999999998 79999998 6552 233332 1 22356799999999999988753322233443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHH
Q 022237 66 GPNGLLQGGNSVRPQLLIDSSTIDPQT 92 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~st~~p~~ 92 (300)
. + .++.+|+++|+-.|+.
T Consensus 283 ~----M-----a~~pIIfalSNPt~E~ 300 (388)
T 1vl6_A 283 K----M-----SRKPVIFALANPVPEI 300 (388)
T ss_dssp T----S-----CSSCEEEECCSSSCSS
T ss_pred h----c-----CCCCEEEEcCCCCCCC
Confidence 2 1 1236999999866543
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.13 Score=45.62 Aligned_cols=88 Identities=11% Similarity=0.164 Sum_probs=59.0
Q ss_pred HHHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 5 MASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 5 la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
.+..|.+. +++|. ++|++++++. .+. +...+.+.++.+++ .|+|++|+|+....+.+.. .++. +.
T Consensus 21 ~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~----al~a----Gk 90 (362)
T 3fhl_A 21 HAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGM----ALEA----GK 90 (362)
T ss_dssp THHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHH----HHHT----TC
T ss_pred HHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHC----CC
Confidence 44556554 66765 7899988743 222 55667899999876 8999999999866554432 2321 22
Q ss_pred eEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
.++++-- +....+++++.+..++
T Consensus 91 hVl~EKP~a~~~~ea~~l~~~a~~ 114 (362)
T 3fhl_A 91 NVVVEKPFTSTTKQGEELIALAKK 114 (362)
T ss_dssp EEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHH
Confidence 5666644 5677888888877765
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.044 Score=50.62 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=44.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC----CCC---HHHH-hhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT----KET---PFEV-AEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~----~~~---~~e~-~~~adiVii~vp~~~ 58 (300)
+|..+|+.|.+.||+|++.|+++++++.+.+. +... +++ +.++ +++||+++.++++++
T Consensus 14 vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De 80 (461)
T 4g65_A 14 VGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE 80 (461)
T ss_dssp HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence 48899999999999999999999999988753 4321 222 3333 578999988887763
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.085 Score=46.02 Aligned_cols=57 Identities=7% Similarity=0.084 Sum_probs=42.7
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCC---hhhHHHHHhC-----CCC----CCCCH---HHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVN---CNVMKMFSDM-----GVP----TKETP---FEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~---~~~~~~~~~~-----g~~----~~~~~---~e~~~~adiVii~vp~~ 57 (300)
+|++++..|++.|. +|++++|+ .++++++.+. +.. ...+. .+.+.++|+||-|+|..
T Consensus 159 aaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~G 231 (312)
T 3t4e_A 159 AATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVG 231 (312)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCcCC
Confidence 47889999999998 89999999 7777776542 211 12233 55678999999999876
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.13 Score=41.73 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-CCH----HHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETP----FEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~~----~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|++.|++|++.+|++++...+...++... .+. .+++.++|+||-+...
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 12 AGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 4899999999999999999999998887654443210 111 1567788988888754
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.35 Score=44.76 Aligned_cols=121 Identities=10% Similarity=0.098 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCC--C
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 236 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 236 (300)
.....++.+.|++.+..+.+.++++.+.++ .++|..++.++++.++ ..|+++...... +.....-.+ +
T Consensus 316 ~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a---~~~~~~l~~ll~ 392 (484)
T 4gwg_A 316 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDA---FDRNPELQNLLL 392 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHH---HHHCTTCSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHH---HHhCCCchhhhc
Confidence 457789999999999999999999987765 4599999999999887 577776432110 000000001 1
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 022237 237 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 237 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
++-|. +.......+.++..+-+.|+|+|.+.++...|+.-.. ..-.+.++++.
T Consensus 393 ~~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~----~~lpanliqaq 447 (484)
T 4gwg_A 393 DDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRH----EMLPASLIQAQ 447 (484)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC----SCCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CCCHHHHHHHH
Confidence 12222 3334446677999999999999999999999888733 33334455543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.14 Score=41.49 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-----CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-----~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+.+++.|+++|++|++.+|++++...+. .++.. .+...+++.++|+||.+....
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 12 AGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred hHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 489999999999999999999999887664 33211 111116778999999988553
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.082 Score=44.50 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=29.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG 33 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g 33 (300)
||.++|+.|++.|.+|.+.||++++.+++.+++
T Consensus 14 IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~ 46 (247)
T 3ged_A 14 IGKQICLDFLEAGDKVCFIDIDEKRSADFAKER 46 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence 589999999999999999999999888877653
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.13 Score=45.21 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=40.9
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChh--hHHHHHhCCCC----C---CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCN--VMKMFSDMGVP----T---KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~--~~~~~~~~g~~----~---~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+++..|+..| ++|.++|++++ .+.++...... . .++..++++++|+||++.+.+
T Consensus 20 VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~ 87 (326)
T 1smk_A 20 IGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87 (326)
T ss_dssp THHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence 5889999999988 79999999876 22234432211 1 225578899999999998644
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.052 Score=44.41 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=38.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|.+.|++|++.+|++++...+... .+....+..++++++|+||.+...
T Consensus 16 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 16 VGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp HHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 48999999999999999999998876543211 111112344566778888877643
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.2 Score=45.92 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHh-C-CCCCCCCHHHHhhcCCEEEEecCChhhhhhh-hcCCCCcccCCCCCCC
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSD-M-GVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPNGLLQGGNSVRP 79 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~-~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v-~~~~~~~l~~~~~~~~ 79 (300)
..+++.|.+.|.+|.+||..-.. ...+ . +...+.++.++++++|+|++++.++ +.+++ +..+...+ ++
T Consensus 345 ~~i~~~L~~~g~~v~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~-~f~~~d~~~~~~~~------~~ 415 (446)
T 4a7p_A 345 LSIIAALQDAGATVKAYDPEGVE--QASKMLTDVEFVENPYAAADGADALVIVTEWD-AFRALDLTRIKNSL------KS 415 (446)
T ss_dssp HHHHHHHHHTSCEEEEECSSCHH--HHGGGCSSCCBCSCHHHHHTTBSEEEECSCCT-TTTSCCHHHHHTTB------SS
T ss_pred HHHHHHHHHCCCEEEEECCCCCH--hHHHhcCCceEecChhHHhcCCCEEEEeeCCH-HhhcCCHHHHHHhc------CC
Confidence 46788999999999999987532 2211 1 5666788999999999999999887 44332 11111122 12
Q ss_pred eEEEEcCCCCHH
Q 022237 80 QLLIDSSTIDPQ 91 (300)
Q Consensus 80 ~ivid~st~~p~ 91 (300)
.+|+|.-+....
T Consensus 416 ~~i~D~r~~~~~ 427 (446)
T 4a7p_A 416 PVLVDLRNIYPP 427 (446)
T ss_dssp CBEECSSCCSCH
T ss_pred CEEEECCCCCCH
Confidence 589999887653
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.061 Score=46.77 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=60.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHH-HHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMK-MFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
|...++.|.+.|++ .+|+.||.+.. + -.|.....+++|+.+ ..|++++++|.. .+.+++.+. ++.. .
T Consensus 27 G~~~~~~l~~~G~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~~~~e~---i~~G--i- 96 (305)
T 2fp4_A 27 GTFHSQQALEYGTN-LVGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAAAINEA---IDAE--V- 96 (305)
T ss_dssp HHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHHHHH---HHTT--C-
T ss_pred HHHHHHHHHHCCCc-EEEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEecCHH-HHHHHHHHH---HHCC--C-
Confidence 67788999999999 55666665421 2 247777889999988 899999999987 556666432 2211 1
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~ 102 (300)
+.+|+-+.+......+++.+..++
T Consensus 97 ~~iv~~t~G~~~~~~~~l~~~a~~ 120 (305)
T 2fp4_A 97 PLVVCITEGIPQQDMVRVKHRLLR 120 (305)
T ss_dssp SEEEECCCCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHHHh
Confidence 134554445555555667666654
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.061 Score=43.02 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=35.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|++++...+...++. ...+..++++++|+||.+..
T Consensus 15 iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 15 TGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 48999999999999999999998765433111211 11123344556666666654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.28 Score=40.23 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~ 67 (300)
+|.++++.|++.|++|++.+|++++.+++.+.- -.+...+..=+.+...++.++.+.
T Consensus 13 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~~~~ 69 (230)
T 3guy_A 13 LGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----------SNNVGYRARDLASHQEVEQLFEQL 69 (230)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----------SSCCCEEECCTTCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----------hhccCeEeecCCCHHHHHHHHHHH
Confidence 589999999999999999999999988876541 012333444455666666666543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.46 Score=41.18 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=61.8
Q ss_pred ChHHHHHHHHhCCCeE-EEEcCChhhHHHHHhC--CCCCCCCHHHHh----------hcCCEEEEecCChhhhhhhhcCC
Q 022237 1 MGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVA----------EASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 1 mG~~la~~l~~~G~~V-~~~dr~~~~~~~~~~~--g~~~~~~~~e~~----------~~adiVii~vp~~~~~~~v~~~~ 67 (300)
||...+..+.+.+.++ .++|+++++. .+.+. +.....+.++.+ .+.|+|++|+|+....+-+..
T Consensus 15 i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~-- 91 (312)
T 3o9z_A 15 IAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRM-- 91 (312)
T ss_dssp SHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHH--
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHH--
Confidence 4667788888888775 4789998874 33332 456677888877 579999999999866544432
Q ss_pred CCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 68 NGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
.++. +..++++-- +....+++++.+..++
T Consensus 92 --al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 121 (312)
T 3o9z_A 92 --ALRL----GANALSEKPLVLWPEEIARLKELEAR 121 (312)
T ss_dssp --HHHT----TCEEEECSSSCSCHHHHHHHHHHHHH
T ss_pred --HHHC----CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 2221 224555422 4567788888877765
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.077 Score=44.86 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|.+|.++||++++++++.+
T Consensus 19 IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~ 49 (254)
T 4fn4_A 19 IGRAIAKKFALNDSIVVAVELLEDRLNQIVQ 49 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.27 Score=42.85 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=40.3
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhh--HHHHHhCC----CCC---CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNV--MKMFSDMG----VPT---KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+++..|+..| ++|.++|+++.. +.++.+.. +.. +++.+++++++|+||++.+.+
T Consensus 12 VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~ 79 (314)
T 1mld_A 12 IGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (314)
T ss_dssp THHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence 5889999999888 689999998722 22332221 111 136778899999999998554
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=92.07 E-value=0.18 Score=44.44 Aligned_cols=87 Identities=10% Similarity=0.121 Sum_probs=56.0
Q ss_pred HHHHHhC-CCeEE-EEcCChhhHHHHHh----CCCCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 6 ASNLMKA-GYKMA-VHDVNCNVMKMFSD----MGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 6 a~~l~~~-G~~V~-~~dr~~~~~~~~~~----~g~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
+..+.+. +++|. ++|++ +.+++.+ .+...+.+.++++++ .|+|++|+|+....+.+.. .++.
T Consensus 19 ~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~----al~a---- 88 (349)
T 3i23_A 19 LPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYDLAKQ----AILA---- 88 (349)
T ss_dssp HHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHHHHHH----HHHT----
T ss_pred HHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHHHHHH----HHHc----
Confidence 3445443 56764 78988 3444432 366778899999875 8999999999866554432 2321
Q ss_pred CCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 78 RPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 78 ~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+.+++++-- +..+...+++.+..++
T Consensus 89 Gk~Vl~EKP~a~~~~e~~~l~~~a~~ 114 (349)
T 3i23_A 89 GKSVIVEKPFCDTLEHAEELFALGQE 114 (349)
T ss_dssp TCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 225666533 4567888888877765
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.16 Score=46.64 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCeEEEEcCChhh-HHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhh-hcCCCCcccCCCCCCCe
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v-~~~~~~~l~~~~~~~~~ 80 (300)
..+++.|.+.|.+|.+||..-.. ........+..+.++.++++++|.|++++.++ +.+++ +..+...+ ++.
T Consensus 341 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~-~f~~~~~~~~~~~~------~~~ 413 (450)
T 3gg2_A 341 LVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWK-EFRMPDWSALSQAM------AAS 413 (450)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSCCG-GGSSCCHHHHHHHS------SSC
T ss_pred HHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccCCH-HHhhcCHHHHHHhc------CCC
Confidence 45788999999999999987532 22222112456678899999999999999887 44332 11111112 236
Q ss_pred EEEEcCCCCHH
Q 022237 81 LLIDSSTIDPQ 91 (300)
Q Consensus 81 ivid~st~~p~ 91 (300)
+|+|.-+....
T Consensus 414 ~i~D~r~~~~~ 424 (450)
T 3gg2_A 414 LVIDGRNVYEL 424 (450)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCh
Confidence 89999887654
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.048 Score=44.45 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=36.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCC-CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPT-KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~-~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|++.|++|++.+|++++...+... .+.. ..+..++++++|+||.+...
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 12 VGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp HHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 58999999999999999999998866443100 0111 11233445567777766643
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.13 Score=44.11 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|++++..|++.|++|++++|++++.+++.+
T Consensus 131 iG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 131 VGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 4889999999999999999999988776643
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.12 Score=45.10 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=41.3
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC-----CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~-----g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+++..|+..++ +|.++|+++++++.. ... ......+..+++++||+||++.+.+
T Consensus 16 vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~ 83 (318)
T 1ez4_A 16 VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP 83 (318)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 47889999998887 899999998877532 211 1222235577899999999999765
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.38 Score=42.91 Aligned_cols=78 Identities=0% Similarity=-0.008 Sum_probs=53.3
Q ss_pred EEEcCChhhHHHHHh-CCC-CCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEc-CCCCHH
Q 022237 17 AVHDVNCNVMKMFSD-MGV-PTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQ 91 (300)
Q Consensus 17 ~~~dr~~~~~~~~~~-~g~-~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~-st~~p~ 91 (300)
.++|+++++++.+.+ .|. ..+++.++.+++ .|+|++|+|+....+-+.. .++. +.+++++- -+....
T Consensus 50 av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~----al~~----Gk~V~~EKP~a~~~~ 121 (383)
T 3oqb_A 50 ILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTMFFDAATTQARPGLLTQ----AINA----GKHVYCEKPIATNFE 121 (383)
T ss_dssp EEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCEEEECSCSSSSHHHHHH----HHTT----TCEEEECSCSCSSHH
T ss_pred EEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEECCCchHHHHHHHH----HHHC----CCeEEEcCCCCCCHH
Confidence 489999999988865 466 357899999875 8999999998755443332 2321 22455442 145677
Q ss_pred HHHHHHHHHhh
Q 022237 92 TSRNISAAVSN 102 (300)
Q Consensus 92 ~~~~~~~~~~~ 102 (300)
..+++.+..++
T Consensus 122 ~~~~l~~~a~~ 132 (383)
T 3oqb_A 122 EALEVVKLANS 132 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888777665
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.11 Score=38.72 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=44.5
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
|..+.++|.+.||+|+..|.+.+.+ .|.....|+.+.=. .|++++++|.. .+.+++++
T Consensus 20 g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~~-~v~~~v~e 77 (122)
T 3ff4_A 20 AYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINPQ-NQLSEYNY 77 (122)
T ss_dssp HHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCHH-HHGGGHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCHH-HHHHHHHH
Confidence 5678889999999999888765433 36666777777666 99999999886 77777764
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.048 Score=44.89 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=38.5
Q ss_pred ChHHHHHH--HHhCCCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASN--LMKAGYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~--l~~~G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~ 64 (300)
||..+++. +...|+++. ++|.++++....... ++...+++.+.+++.|+|++|+|+. ..+++.
T Consensus 96 ~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~-~~~ei~ 162 (215)
T 2vt3_A 96 LGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV-AAQSIT 162 (215)
T ss_dssp HHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH-HHHHHH
T ss_pred HHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch-hHHHHH
Confidence 46677773 334577765 569999987654332 2233567788876669999999986 333443
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.27 Score=41.87 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=54.9
Q ss_pred ChHHHHHHHHhC-CCeEEE-EcCChhhH-----HHHH--hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA-GYKMAV-HDVNCNVM-----KMFS--DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~-~dr~~~~~-----~~~~--~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||+.+++.+.+. ++++.. +||++... .++. ..|+...++++++++++|+||-+++.. ...+.+.. .+
T Consensus 19 MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~-a~~~~~~~---al 94 (272)
T 4f3y_A 19 MGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPE-GTLVHLDA---AL 94 (272)
T ss_dssp HHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHH-HHHHHHHH---HH
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHH-HHHHHHHH---HH
Confidence 789999988865 567664 69875421 1111 115666789999999999999998654 55544432 23
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNISAA 99 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~~~ 99 (300)
+. +-.+|+-+++.++....++.+.
T Consensus 95 ~~----G~~vVigTTG~s~~~~~~L~~a 118 (272)
T 4f3y_A 95 RH----DVKLVIGTTGFSEPQKAQLRAA 118 (272)
T ss_dssp HH----TCEEEECCCCCCHHHHHHHHHH
T ss_pred Hc----CCCEEEECCCCCHHHHHHHHHH
Confidence 21 2145553444445544455444
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.7 Score=38.40 Aligned_cols=73 Identities=7% Similarity=0.141 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|.++++.|++.|++|++.+|++++.+.+.+. .-.+...+..=+.++.+++.++........ +-.
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g-----~iD 76 (248)
T 3asu_A 12 FGECITRRFIQQGHKVIATGRRQERLQELKDE----------LGDNLYIAQLDVRNRAAIEEMLASLPAEWC-----NID 76 (248)
T ss_dssp THHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCTTEEEEECCTTCHHHHHHHHHTSCTTTC-----CCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcCceEEEEcCCCCHHHHHHHHHHHHHhCC-----CCC
Confidence 69999999999999999999999887766432 001122222234455566666654322221 115
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
++|++.+.
T Consensus 77 ~lvnnAg~ 84 (248)
T 3asu_A 77 ILVNNAGL 84 (248)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 77776654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.19 Score=44.00 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=41.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC-----CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~-----g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+++..|+..++ +|.++|+++++++.. ... ......+..+++++||+||++.+.+
T Consensus 20 vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~ 87 (326)
T 2zqz_A 20 VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 47889999988886 899999998877542 221 1222235577899999999998765
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.25 Score=43.20 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=38.9
Q ss_pred hH-HHHHHHHhCCCeEEEEcCCh--hhHHHHHhCCCCCC--CCHHHHh-hcCCEEEEec
Q 022237 2 GF-RMASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTK--ETPFEVA-EASDVVITML 54 (300)
Q Consensus 2 G~-~la~~l~~~G~~V~~~dr~~--~~~~~~~~~g~~~~--~~~~e~~-~~adiVii~v 54 (300)
|. ++|+.|.+.|++|+++|+++ ...+.+.+.|+... .++++.. .++|+||.+-
T Consensus 16 Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Sp 74 (326)
T 3eag_A 16 FMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGN 74 (326)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECT
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECC
Confidence 55 48899999999999999874 35567877787543 3445544 4799999863
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.19 Score=43.87 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=41.2
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHh------CCCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD------MGVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~------~g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+++..|+..|+ +|.++|+++++++. +.. .......+..+++++||+||++++.+
T Consensus 17 vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 17 VGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA 85 (317)
T ss_dssp HHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence 47889999998885 89999999876643 121 11222224577899999999999765
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=91.09 E-value=0.15 Score=44.87 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC----C---CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G---VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~~----g---~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
||.++|..|+..|+ +|.++|+++++++. +... . .....+. +.+++||+||++...+
T Consensus 30 vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~aG~~ 98 (331)
T 4aj2_A 30 VGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIITAGAR 98 (331)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 68999999999997 89999999887654 3322 1 1123344 4689999999997543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.095 Score=44.30 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
||.++|+.|++.|.+|.+.||+++++++..
T Consensus 21 IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~ 50 (255)
T 4g81_D 21 LGFAYAEGLAAAGARVILNDIRATLLAESV 50 (255)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999998876654
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.34 Score=42.54 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=58.2
Q ss_pred HHHHHhC-CCeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 6 ASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 6 a~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
+..+.+. +.+|. ++|+++++++++.+. |+ ...+|.++.++ +.|+|+||+|+....+-+.. .++. +.
T Consensus 40 ~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~----al~a----Gk 111 (350)
T 4had_A 40 VPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWSIK----AADA----GK 111 (350)
T ss_dssp HHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHHHHHH----HHHT----TC
T ss_pred HHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHHHH----HHhc----CC
Confidence 4445554 55765 789999999888765 65 36789999986 47999999999866554432 2221 11
Q ss_pred eEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 80 QLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
.++++-= +....+++++.+..++
T Consensus 112 hVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 112 HVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp EEEECSCCCSSGGGGHHHHHHHHH
T ss_pred EEEEeCCcccchhhHHHHHHHHHH
Confidence 4555421 3455667777776654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.76 E-value=0.21 Score=42.66 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=28.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|.+|.+.+|+++++++..+
T Consensus 41 IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~ 71 (273)
T 4fgs_A 41 IGLAAAKRFVAEGARVFITGRRKDVLDAAIA 71 (273)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.23 Score=40.88 Aligned_cols=55 Identities=5% Similarity=-0.009 Sum_probs=39.5
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|++. |++|++.+|++++.+.+ ..++. ...+..+++++.|+||-+...
T Consensus 16 iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 79 (253)
T 1xq6_A 16 TGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTSA 79 (253)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence 489999999999 89999999998877655 22221 112344567788988887743
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.16 Score=43.13 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=41.8
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|.+. |++|++.+|++++...+...++.. ..+..++++++|+||.+.+.
T Consensus 12 iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 12 LGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp HHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred HHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 488999999998 999999999998877665444321 12345667788999888754
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.25 Score=42.19 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=41.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh-------hhHHHH---HhCCCCC-------CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC-------NVMKMF---SDMGVPT-------KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~-------~~~~~~---~~~g~~~-------~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+.+++.|++.||+|++.+|++ ++.+.+ ...++.. ..++.++++++|+||.+.+..
T Consensus 14 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~~ 87 (307)
T 2gas_A 14 IGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGRL 87 (307)
T ss_dssp THHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECSSSS
T ss_pred HHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEEECCccc
Confidence 58999999999999999999987 554433 3344321 123456778999999988653
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.62 E-value=0.31 Score=41.70 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=40.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC-----hhhHHHH---HhCCCCC-------CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN-----CNVMKMF---SDMGVPT-------KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~-----~~~~~~~---~~~g~~~-------~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|.+.|++|++.+|+ +++.+.+ ...++.. ..++.++++++|+||.+.+.
T Consensus 16 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 16 IGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAG 86 (313)
T ss_dssp THHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECCcc
Confidence 5899999999999999999998 4454433 2334321 12345678899999998864
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.46 E-value=0.34 Score=41.40 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=40.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh------hhHHH---HHhCCCCC-------CCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC------NVMKM---FSDMGVPT-------KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~------~~~~~---~~~~g~~~-------~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+.+++.|++.||+|++.+|++ ++.+. +...|+.. ..++.++++++|+||.+.+..
T Consensus 16 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~~ 88 (308)
T 1qyc_A 16 IGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSL 88 (308)
T ss_dssp THHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEECCCGG
T ss_pred HHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEECCcch
Confidence 58999999999999999999974 33332 22334321 123456778999999998653
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=90.44 E-value=0.26 Score=41.34 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 20 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (259)
T 4e6p_A 20 IGRAFAEAYVREGATVAIADIDIERARQAAA 50 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=90.41 E-value=0.24 Score=41.36 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 24 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (252)
T 3f1l_A 24 IGREAAMTYARYGATVILLGRNEEKLRQVAS 54 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.62 Score=39.41 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|.++++.|++.|++|++.+|++++.+++.+.- .+. .....+..=+.+..+++.++.+....... =.
T Consensus 33 IG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~-------~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~-----iD 99 (272)
T 2nwq_A 33 FGEACARRFAEAGWSLVLTGRREERLQALAGEL-------SAK-TRVLPLTLDVRDRAAMSAAVDNLPEEFAT-----LR 99 (272)
T ss_dssp SHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TTT-SCEEEEECCTTCHHHHHHHHHTCCGGGSS-----CC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------hcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhCC-----CC
Confidence 699999999999999999999998877664320 000 12222333345566677776554322211 14
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
++|+..+.
T Consensus 100 ~lvnnAG~ 107 (272)
T 2nwq_A 100 GLINNAGL 107 (272)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 67776553
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.35 Score=41.63 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=40.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh------hhHHH---HHhCCCCC-------CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC------NVMKM---FSDMGVPT-------KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~------~~~~~---~~~~g~~~-------~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|++.||+|++.+|++ ++.+. +...++.. ..++.++++++|+||.+...
T Consensus 16 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~~a~~ 87 (321)
T 3c1o_A 16 IGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISALPF 87 (321)
T ss_dssp THHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred hHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence 58999999999999999999986 33333 23334321 12355678899999999864
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=90.14 E-value=0.66 Score=41.75 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=61.7
Q ss_pred hHHHHHHHHhC---------CCeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCC
Q 022237 2 GFRMASNLMKA---------GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 2 G~~la~~l~~~---------G~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~ 67 (300)
|...+..|.+. +.+|. ++|+++++++++.+. |. +..++.++.++ +.|+|+||+|+....+-+..
T Consensus 38 g~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~~~H~~~~~~-- 115 (412)
T 4gqa_A 38 GQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPNHLHYTMAMA-- 115 (412)
T ss_dssp HHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH--
T ss_pred HHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCcHHHHHHHHH--
Confidence 44455556543 33544 789999999888665 55 46789999986 58999999999866554443
Q ss_pred CCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 68 NGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
.++. +..++++-= +....+++++.+..++
T Consensus 116 --al~a----GkhVl~EKP~a~~~~ea~~l~~~a~~ 145 (412)
T 4gqa_A 116 --AIAA----GKHVYCEKPLAVNEQQAQEMAQAARR 145 (412)
T ss_dssp --HHHT----TCEEEEESCSCSSHHHHHHHHHHHHH
T ss_pred --HHHc----CCCeEeecCCcCCHHHHHHHHHHHHH
Confidence 2221 224555532 4567778888777654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=90.09 E-value=0.24 Score=41.97 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (270)
T 3ftp_A 40 IGRAIALELARRGAMVIGTATTEAGAEGIGA 70 (270)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.06 E-value=0.16 Score=43.01 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++++++.+
T Consensus 16 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 46 (264)
T 3tfo_A 16 IGEGIARELGVAGAKILLGARRQARIEAIAT 46 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=90.06 E-value=0.19 Score=42.48 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=40.5
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCCC----C---CCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT----K---ETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~~----~---~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+. ||+|++.+|++++...+...++.. . .+..++++++|+||-+..
T Consensus 12 iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 12 LGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp HHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 489999999998 999999999988877665544321 1 123456678888887764
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=90.00 E-value=0.13 Score=45.19 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=42.7
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCH---HHH-hhcCCEEEEecCChhh
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETP---FEV-AEASDVVITMLPSSSH 59 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~---~e~-~~~adiVii~vp~~~~ 59 (300)
|..+++.|.+.|+ |++.|+++++++ +.+.+... ..++ .++ ++++|.|++++++++.
T Consensus 127 g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~ 190 (336)
T 1lnq_A 127 TLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE 190 (336)
T ss_dssp HHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH
T ss_pred HHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH
Confidence 7788999999999 999999999998 77765432 1222 233 5789999999988743
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=0.45 Score=40.90 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh-hHH---HHHhCCCCC-------CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN-VMK---MFSDMGVPT-------KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~-~~~---~~~~~g~~~-------~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|.+.|++|++.+|+++ +.+ .+...|+.. ..++.++++++|+||.+.+.
T Consensus 23 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 23 IGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp THHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 589999999999999999999875 332 233444321 12345678899999998864
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.97 E-value=0.2 Score=42.18 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (264)
T 3ucx_A 23 LGTTLARRCAEQGADLVLAARTVERLEDVAK 53 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.31 Score=40.74 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 21 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (261)
T 3n74_A 21 FGEGMAKRFAKGGAKVVIVDRDKAGAERVAG 51 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999998877754
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.22 Score=42.34 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 44 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 74 (276)
T 3r1i_A 44 IGKKVALAYAEAGAQVAVAARHSDALQVVAD 74 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999888766643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.36 Score=40.80 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=42.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|.++||+|++.+|++++...+...++.. ..+++ +.++|+||-+...
T Consensus 16 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 16 TARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp HHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 489999999999999999999999888777665321 12223 6789999998854
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=89.84 E-value=0.69 Score=39.68 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=55.4
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhh-----HHHHH---hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNV-----MKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~-----~~~~~---~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||+.+++.+.+. ++++. ++|+++.. +.++. ..|+..++++++++.++|+||-+++.. .+.+.+.. .
T Consensus 33 MGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p~-a~~~~~~~---~ 108 (288)
T 3ijp_A 33 MGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQPQ-ASVLYANY---A 108 (288)
T ss_dssp HHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCHH-HHHHHHHH---H
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCHH-HHHHHHHH---H
Confidence 788888888754 67755 56987532 22222 236777889999999999999888544 44444321 2
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAAV 100 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~~ 100 (300)
++. +-.+|+-+++-++....++.+..
T Consensus 109 l~~----Gv~vViGTTG~~~e~~~~L~~aa 134 (288)
T 3ijp_A 109 AQK----SLIHIIGTTGFSKTEEAQIADFA 134 (288)
T ss_dssp HHH----TCEEEECCCCCCHHHHHHHHHHH
T ss_pred HHc----CCCEEEECCCCCHHHHHHHHHHh
Confidence 221 11455544444555555555544
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.65 E-value=1.1 Score=39.58 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=53.9
Q ss_pred CCeE-EEEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC-
Q 022237 13 GYKM-AVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS- 86 (300)
Q Consensus 13 G~~V-~~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s- 86 (300)
+.+| .++|+++++++++.+. |. ...+|.++.++ +.|+|+||+|+....+-+.. .++. +..++++-=
T Consensus 56 ~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~~H~~~a~~----al~a----GkhVl~EKPl 127 (393)
T 4fb5_A 56 RPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQFHAEMAIA----ALEA----GKHVWCEKPM 127 (393)
T ss_dssp CCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEECSCS
T ss_pred CcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChHHHHHHHHH----HHhc----CCeEEEccCC
Confidence 3454 4789999999888765 65 46789999986 57999999999876655543 2221 224555422
Q ss_pred CCCHHHHHHHHHHHhh
Q 022237 87 TIDPQTSRNISAAVSN 102 (300)
Q Consensus 87 t~~p~~~~~~~~~~~~ 102 (300)
+....+++++.+..++
T Consensus 128 a~~~~ea~~l~~~a~~ 143 (393)
T 4fb5_A 128 APAYADAERMLATAER 143 (393)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhhhHHh
Confidence 4566777788777664
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.22 Score=43.28 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=39.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|++++.+.+...++. ...+..++++++|+||-+..
T Consensus 25 iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 25 LGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred HHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 48999999999999999999998876655433321 11234466788999998874
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.19 Score=42.39 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=39.9
Q ss_pred ChHHHHHHHHhC--CCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~--G~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+. |++|++.+|++++.+.+...++.. ..+..++++++|+||-+..
T Consensus 11 iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 11 LGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp HHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred HHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 489999999998 999999999988776665544321 1223456678888887764
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.59 E-value=0.33 Score=40.32 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 21 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T 3qiv_A 21 IGQAYAEALAREGAAVVVADINAEAAEAVAK 51 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=0.43 Score=39.83 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (254)
T 1hdc_A 17 LGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988777654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=89.54 E-value=0.33 Score=40.39 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 21 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (248)
T 3op4_A 21 IGKAIAELLAERGAKVIGTATSESGAQAISD 51 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.45 Score=39.84 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 24 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (263)
T 3ak4_A 24 IGAAIARALDKAGATVAIADLDVMAAQAVVA 54 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=0.94 Score=41.22 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHH------HHHhC--C---CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMK------MFSDM--G---VPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~------~~~~~--g---~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
..+++.|.+.|.+|.+||..-+... .+... + ...+.++.++++++|+|++++.++ +.+++-. ..+
T Consensus 336 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vi~~~~~-~~~~~~~---~~~ 411 (436)
T 1mv8_A 336 VELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDE-LFVDLVN---KTP 411 (436)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECSCCG-GGHHHHH---SCC
T ss_pred HHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCCcEEEEeCCcH-HHHhhhH---Hhc
Confidence 4688999999999999997633322 12100 0 134678899999999999999887 6654431 122
Q ss_pred cCCCCCCCeEEEEcCCCCH
Q 022237 72 QGGNSVRPQLLIDSSTIDP 90 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p 90 (300)
.+++|+|.-+...
T Consensus 412 ------~~~~i~D~r~~~~ 424 (436)
T 1mv8_A 412 ------SGKKLVDLVGFMP 424 (436)
T ss_dssp ------TTCEEEESSSCCS
T ss_pred ------CCCEEEECCCCCC
Confidence 2368999887653
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=0.35 Score=40.56 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (260)
T 1nff_A 19 MGASHVRAMVAEGAKVVFGDILDEEGKAMAA 49 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=89.30 E-value=0.25 Score=42.99 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHH----HHhC-----CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~----~~~~-----g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+++..|+..+ .+|.++|+++++++. +.+. ......+..+++++||+||++.+.+
T Consensus 11 vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~ 78 (310)
T 2xxj_A 11 VGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA 78 (310)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 4788999999887 489999999887653 2221 1122223477899999999998765
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.25 E-value=0.25 Score=40.95 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 17 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (247)
T 3lyl_A 17 IGFEVAHALASKGATVVGTATSQASAEKFEN 47 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=89.08 E-value=0.15 Score=42.07 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=23.1
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~ 26 (300)
+|+.+++.|++.|+ +|++.+|++++.
T Consensus 30 iG~~l~~~L~~~G~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 30 TGRVLLKEILEQGLFSKVTLIGRRKLTF 57 (242)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred HHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence 58999999999999 999999997654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.03 E-value=0.39 Score=39.76 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 26 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 56 (249)
T 3f9i_A 26 IGSAIARLLHKLGSKVIISGSNEEKLKSLGN 56 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=89.01 E-value=0.2 Score=42.56 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 36 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 66 (279)
T 3sju_A 36 IGLAVARTLAARGIAVYGCARDAKNVSAAVD 66 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.4 Score=39.89 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 18 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (247)
T 3rwb_A 18 IGKAIAARLAADGATVIVSDINAEGAKAAAA 48 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=88.98 E-value=0.39 Score=40.71 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=27.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++++.+
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (272)
T 4dyv_A 40 VGRAVAVALAGAGYGVALAGRRLDALQETAA 70 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988877654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.61 Score=39.18 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=26.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 32 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 61 (266)
T 4egf_A 32 IGADIARAFAAAGARLVLSGRDVSELDAAR 61 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998877654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=0.37 Score=39.53 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 44 (235)
T 3l77_A 14 IGEAIARALARDGYALALGARSVDRLEKIAH 44 (235)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=88.86 E-value=0.22 Score=41.76 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 24 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (256)
T 3gaf_A 24 IGRAIAGTFAKAGASVVVTDLKSEGAEAVAA 54 (256)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.73 Score=39.20 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=28.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++++.|++.|++|++.+|++++.+.+.+.
T Consensus 28 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~ 59 (291)
T 3rd5_A 28 LGAVTARELARRGATVIMAVRDTRKGEAAART 59 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999999988877653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=88.80 E-value=0.24 Score=41.57 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 41 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 71 (262)
T 3rkr_A 41 IGAAIARKLGSLGARVVLTARDVEKLRAVER 71 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=88.80 E-value=0.42 Score=40.05 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.8
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~ 23 (300)
+|+.+++.|++.|. +++++|++.
T Consensus 42 ~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 42 LGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCC
Confidence 48899999999997 899999987
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=88.78 E-value=0.5 Score=40.85 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=25.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|+.+++.|++.|++|++.+|++++.+.+
T Consensus 23 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 51 (342)
T 1y1p_A 23 VASHVVEQLLEHGYKVRGTARSASKLANL 51 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence 58999999999999999999998776544
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.71 E-value=0.39 Score=40.41 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=28.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++++.|++.|++|++.+|++++.+++.+.
T Consensus 18 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (263)
T 2a4k_A 18 IGRAALDLFAREGASLVAVDREERLLAEAVAA 49 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 58999999999999999999999888776543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=88.69 E-value=0.39 Score=40.89 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=40.3
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhH--HHHHhCCCCC----C---CCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVM--KMFSDMGVPT----K---ETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~--~~~~~~g~~~----~---~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.| ++|++.+|++++. ..+...++.. . .+..++++++|+||.+.+
T Consensus 17 iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 17 QGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 4899999999998 9999999998764 3444444321 1 234567789999999875
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.64 E-value=0.41 Score=40.66 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 39 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 69 (277)
T 4dqx_A 39 IGRATAELFAKNGAYVVVADVNEDAAVRVAN 69 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=88.57 E-value=0.36 Score=43.61 Aligned_cols=57 Identities=7% Similarity=0.100 Sum_probs=42.1
Q ss_pred ChHHHHHHHHhCCC---eEEEEcCChhhHHHHHhC-------CCC-------CCCCHHHHhhc--CCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDM-------GVP-------TKETPFEVAEA--SDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~---~V~~~dr~~~~~~~~~~~-------g~~-------~~~~~~e~~~~--adiVii~vp~~ 57 (300)
+|+.+++.|++.|. +|.+++|++++++++.+. .+. ...+..+++++ +|+||.|+|..
T Consensus 12 iG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVin~ag~~ 87 (405)
T 4ina_A 12 VGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLNIALPY 87 (405)
T ss_dssp HHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEEECSCGG
T ss_pred HHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEEECCCcc
Confidence 58899999999983 899999999998776542 111 11234566666 89999999765
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=88.53 E-value=1.1 Score=40.81 Aligned_cols=73 Identities=8% Similarity=0.174 Sum_probs=50.7
Q ss_pred HHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 3 FRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 3 ~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
..+++.|.+. |.+|.+||..-..- ....++.++++++|+|++++.++ +.+++-. ..+ .. .++++
T Consensus 338 ~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~~~-~f~~~d~--~~~-~~---~~~~~ 402 (431)
T 3ojo_A 338 FDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSDHS-EFKNLSD--SHF-DK---MKHKV 402 (431)
T ss_dssp HHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSCCG-GGTSCCG--GGG-TT---CSSCE
T ss_pred HHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecCCH-HHhccCH--HHH-Hh---CCCCE
Confidence 4578889998 99999999764321 23467889999999999999887 5543311 111 11 12369
Q ss_pred EEEcCCCCH
Q 022237 82 LIDSSTIDP 90 (300)
Q Consensus 82 vid~st~~p 90 (300)
|+|.-+...
T Consensus 403 i~D~r~~~~ 411 (431)
T 3ojo_A 403 IFDTKNVVK 411 (431)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999888764
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=88.45 E-value=0.23 Score=42.01 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|.++++.|++.|++|++.+|++++++.+
T Consensus 28 IG~aia~~l~~~G~~V~~~~r~~~~~~~~ 56 (266)
T 3p19_A 28 IGEAIARRFSEEGHPLLLLARRVERLKAL 56 (266)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence 58999999999999999999998876654
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.33 E-value=0.53 Score=39.02 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 17 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (245)
T 1uls_A 17 IGRATLELFAKEGARLVACDIEEGPLREAAE 47 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877654
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.28 E-value=0.69 Score=38.25 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (246)
T 2ag5_A 18 IGQAAALAFAREGAKVIATDINESKLQELE 47 (246)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHGGGG
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999988776554
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.15 E-value=0.36 Score=40.35 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=22.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.++..
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (257)
T 3tpc_A 19 LGAAVTRMLAQEGATVLGLDLKPPAGEEPA 48 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCC------
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 589999999999999999999988776554
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.14 E-value=0.48 Score=39.50 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 43 (256)
T 1geg_A 14 IGKAIALRLVKDGFAVAIADYNDATAKAVA 43 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776553
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=88.10 E-value=0.69 Score=42.75 Aligned_cols=82 Identities=10% Similarity=0.105 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCeEEEEcCChhh-HHHHHh----------CCCCCCCCHHHHhhcCCEEEEecCChhhhhhhh-cCCCCc
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNV-MKMFSD----------MGVPTKETPFEVAEASDVVITMLPSSSHVLDVY-NGPNGL 70 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~-~~~~~~----------~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~-~~~~~~ 70 (300)
..+++.|.+.|.+|.+||..... ...... .....+.++.++++++|+|++++..+ +.+.+- ..+...
T Consensus 351 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~-~f~~~~~~~~~~~ 429 (478)
T 2y0c_A 351 RELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAARDADALVIVTEWK-IFKSPDFVALGRL 429 (478)
T ss_dssp HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTTTCSEEEECSCCG-GGGSCCHHHHHTT
T ss_pred HHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHhCCCEEEEecCCh-HhhccCHHHHHhh
Confidence 35788999999999999986432 112111 12445678899999999999999887 544321 111111
Q ss_pred ccCCCCCCCeEEEEcCCCCHH
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~ 91 (300)
+ ..++|+|.-+....
T Consensus 430 ~------~~~~i~D~r~~~~~ 444 (478)
T 2y0c_A 430 W------KTPVIFDGRNLYEP 444 (478)
T ss_dssp C------SSCEEEESSCCSCH
T ss_pred c------CCCEEEECCCCCCH
Confidence 2 22699999987743
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=0.48 Score=41.34 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=40.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh----hhHH---HHHhCCCC-------CCCCHHHHhh--cCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC----NVMK---MFSDMGVP-------TKETPFEVAE--ASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~----~~~~---~~~~~g~~-------~~~~~~e~~~--~adiVii~vp~ 56 (300)
+|+.+++.|.+.||+|++.+|++ ++.+ .+...++. ...++.++++ ++|+||.+...
T Consensus 22 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 22 IGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECCch
Confidence 48999999999999999999976 4444 23334432 1223456778 99999999865
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=87.83 E-value=0.44 Score=40.33 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 38 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 68 (271)
T 4ibo_A 38 LGRAMAEGLAVAGARILINGTDPSRVAQTVQ 68 (271)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=87.73 E-value=0.5 Score=39.93 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=27.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 17 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (281)
T 3m1a_A 17 FGRAIAEAAVAAGDTVIGTARRTEALDDLVA 47 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.72 E-value=0.52 Score=39.76 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (270)
T 1yde_A 21 IGAGIVRAFVNSGARVVICDKDESGGRALEQ 51 (270)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=87.61 E-value=0.54 Score=39.63 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 39 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 69 (266)
T 3grp_A 39 IGEAIARCFHAQGAIVGLHGTREDKLKEIAA 69 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877643
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=87.60 E-value=0.45 Score=39.91 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|+++..+++.+
T Consensus 20 IG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~ 50 (256)
T 4fs3_A 20 IAFGVAKVLDQLGAKLVFTYRKERSRKELEK 50 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999887766543
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.59 E-value=0.45 Score=40.18 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (271)
T 3tzq_B 23 IGLETSRVLARAGARVVLADLPETDLAGAAA 53 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999887766643
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.51 E-value=0.53 Score=39.95 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 41 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 71 (277)
T 3gvc_A 41 IGLAVARRLADEGCHVLCADIDGDAADAAAT 71 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=0.68 Score=38.23 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 23 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (255)
T 1fmc_A 23 IGKEIAITFATAGASVVVSDINADAANHVV 52 (255)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999988766553
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=87.46 E-value=0.48 Score=39.50 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 24 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 53 (265)
T 2o23_A 24 LGLATAERLVGQGASAVLLDLPNSGGEAQA 53 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHhHHHHH
Confidence 589999999999999999999988766554
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.43 E-value=0.37 Score=41.44 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 43 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 73 (301)
T 3tjr_A 43 IGLATATEFARRGARLVLSDVDQPALEQAVN 73 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=87.31 E-value=0.67 Score=39.24 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++|+.|++.|++|++.+|++++.+.+.
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~~~~ 74 (275)
T 4imr_A 45 IGAAIAEGLAGAGAHVILHGVKPGSTAAVQ 74 (275)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTTTHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999988776654
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.15 E-value=0.67 Score=40.48 Aligned_cols=90 Identities=9% Similarity=0.073 Sum_probs=54.6
Q ss_pred HHHHHHHhCCCeEE-EEcCCh-hhHHHHHh----CC--CCCCCCHHHHhhc--CCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 4 RMASNLMKAGYKMA-VHDVNC-NVMKMFSD----MG--VPTKETPFEVAEA--SDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 4 ~la~~l~~~G~~V~-~~dr~~-~~~~~~~~----~g--~~~~~~~~e~~~~--adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
..+..| ..+.+|. ++|+++ ++.+.+.+ .| ....++.++.+++ .|+|++|+|+....+-+.. .++.
T Consensus 16 ~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~----al~a 90 (337)
T 3ip3_A 16 YALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNGKILLE----ALER 90 (337)
T ss_dssp HHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHHHHHHH----HHHT
T ss_pred HHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHHHHHHH----HHHC
Confidence 333444 4466765 689987 34444332 24 3567899999864 8999999999865544432 2221
Q ss_pred CCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 74 GNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 74 ~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+..++++-= +....+++++.+..++
T Consensus 91 ----GkhVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 91 ----KIHAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp ----TCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred ----CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 124555422 3556778888777765
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=87.11 E-value=0.43 Score=40.92 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=36.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CCCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|++.... +... ... ..+..++++++|+||-+..
T Consensus 14 iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 14 LGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 489999999999999999999965544 3211 122 3345667789999998874
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=87.05 E-value=0.6 Score=38.40 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 19 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (248)
T 2pnf_A 19 IGRAIAEKLASAGSTVIITGTSGERAKAVA 48 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 589999999999999999999988776553
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.90 E-value=0.99 Score=39.39 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=56.4
Q ss_pred HHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhhc---CCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 4 RMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 4 ~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~---adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
..+..|.+. +.+|. ++|+++++ .|+....+.++.+++ .|+|++|+|+....+-+.. .++. +
T Consensus 40 ~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~----al~a----G 105 (330)
T 4ew6_A 40 QHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYK----ALVA----G 105 (330)
T ss_dssp THHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHHH----HHHT----T
T ss_pred HHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHH----HHHc----C
Confidence 456667764 56754 67999764 366777899998865 8999999998865543332 2221 2
Q ss_pred CeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
..++++-- +....+.+++.+..++
T Consensus 106 khVl~EKP~a~~~~e~~~l~~~a~~ 130 (330)
T 4ew6_A 106 KHVFLEKPPGATLSEVADLEALANK 130 (330)
T ss_dssp CEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHh
Confidence 24555432 4567778888777765
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=86.83 E-value=0.65 Score=38.55 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 25 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 54 (260)
T 3awd_A 25 IGLACVTALAEAGARVIIADLDEAMATKAV 54 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988765543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=86.74 E-value=0.59 Score=38.66 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=25.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC-hhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN-CNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~-~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|+ +++.+.+.
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (258)
T 3afn_B 19 IGLATARLFARAGAKVGLHGRKAPANIDETI 49 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCTTHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhhHHHHH
Confidence 5899999999999999999998 77665543
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=86.71 E-value=0.61 Score=43.07 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhh-hcCCCCcccCCCCCCCeE
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v-~~~~~~~l~~~~~~~~~i 81 (300)
..+++.|.+.|.+|.+||..-.. + .....+.++.++++++|+|++++.++ +.+++ +..+...+. .++.+
T Consensus 376 ~~i~~~L~~~g~~V~~~DP~~~~---~--~~~~~~~~~~~~~~~ad~vvi~t~~~-~f~~~d~~~~~~~~~----~~~~~ 445 (478)
T 3g79_A 376 EPYRDLCLKAGASVMVHDPYVVN---Y--PGVEISDNLEEVVRNADAIVVLAGHS-AYSSLKADWAKKVSA----KANPV 445 (478)
T ss_dssp HHHHHHHHHHTCEEEEECSSCCC---B--TTBCEESCHHHHHTTCSEEEECSCCH-HHHSCCHHHHHHHHC----CSSCE
T ss_pred HHHHHHHHHCCCEEEEECCCccc---c--cCcceecCHHHHHhcCCEEEEecCCH-HHHhhhHHHHHHHhc----cCCCE
Confidence 45788899999999999977552 1 12234578899999999999999887 55432 111111221 01369
Q ss_pred EEEcCCCCH
Q 022237 82 LIDSSTIDP 90 (300)
Q Consensus 82 vid~st~~p 90 (300)
|+|.-+...
T Consensus 446 i~D~rn~~~ 454 (478)
T 3g79_A 446 IIDGRNVIE 454 (478)
T ss_dssp EEESSSCSC
T ss_pred EEECCCCCC
Confidence 999988764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=86.51 E-value=0.67 Score=40.81 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=39.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH--HHHHhC-CCC----C-CCC---HHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM--KMFSDM-GVP----T-KET---PFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~--~~~~~~-g~~----~-~~~---~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|++.|++|++.+|++++. +.+... ++. . ..+ ..++++++|+||.+...
T Consensus 17 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 17 QGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 48999999999999999999988765 444332 221 1 122 45667899999977643
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=0.6 Score=39.53 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh--hhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC--NVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~--~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++ +.++++.+
T Consensus 40 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~ 72 (280)
T 3nrc_A 40 IAYGIAKAMHREGAELAFTYVGQFKDRVEKLCA 72 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHH
Confidence 58899999999999999999987 55555544
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=1.3 Score=38.02 Aligned_cols=89 Identities=17% Similarity=0.057 Sum_probs=57.2
Q ss_pred ChHHHHHHHHh----CCCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMK----AGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~----~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||...+..|.+ .++++. ++|+++.. ...|+. ..+.++.++ +.|+|++|+|+....+.+.. .++.
T Consensus 18 iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~----al~a 88 (294)
T 1lc0_A 18 AGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYIRQ----FLQA 88 (294)
T ss_dssp HHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHHHH----HHHT
T ss_pred HHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHHHH----HHHC
Confidence 46666777754 345654 77887421 122443 478999886 68999999999866554442 2322
Q ss_pred CCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 022237 74 GNSVRPQLLIDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 74 ~~~~~~~ivid~-st~~p~~~~~~~~~~~~ 102 (300)
+.+++++- -+..+.+.+++.+..++
T Consensus 89 ----GkhVl~EKPla~~~~ea~~l~~~a~~ 114 (294)
T 1lc0_A 89 ----GKHVLVEYPMTLSFAAAQELWELAAQ 114 (294)
T ss_dssp ----TCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred ----CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22577764 35678888888887765
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=86.19 E-value=0.41 Score=42.16 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=40.5
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CC-------C-CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GV-------P-TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~-g~-------~-~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+. ||+|++.+|++++...+... ++ . ...+..++++++|+||-+..
T Consensus 36 iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~ 100 (372)
T 3slg_A 36 IGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA 100 (372)
T ss_dssp HHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred HHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence 489999999998 99999999998877666542 21 1 11234567789999998653
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.85 E-value=0.63 Score=38.35 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 15 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 45 (235)
T 3l6e_A 15 LGRALTIGLVERGHQVSMMGRRYQRLQQQEL 45 (235)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988876653
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=85.80 E-value=0.47 Score=39.43 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh-hhHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC-NVMKM 28 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~-~~~~~ 28 (300)
+|.++++.|++.|++|++.+|++ ++.++
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (249)
T 2ew8_A 19 IGRAIAERFAVEGADIAIADLVPAPEAEA 47 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhHHHH
Confidence 58999999999999999999998 66553
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.77 E-value=1 Score=37.94 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 44 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 73 (279)
T 1xg5_A 44 IGAAVARALVQQGLKVVGCARTVGNIEELA 73 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence 589999999999999999999988776653
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=0.42 Score=40.72 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=52.3
Q ss_pred ChHHHHHHHHh-CCCeEE-EEcCChhhH--HHH------HhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 1 MGFRMASNLMK-AGYKMA-VHDVNCNVM--KMF------SDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 1 mG~~la~~l~~-~G~~V~-~~dr~~~~~--~~~------~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
||+.+++.+.. .|++|. ++|+++++. ..+ ...++...++++++++++|+||-+++.. ...+.+.. .
T Consensus 17 mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~p~-~~~~~~~~---a 92 (273)
T 1dih_A 17 MGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPE-GTLNHLAF---C 92 (273)
T ss_dssp HHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCHH-HHHHHHHH---H
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCChH-HHHHHHHH---H
Confidence 78888888774 578876 779887532 111 1113444567778788999999666333 44444432 2
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHH
Q 022237 71 LQGGNSVRPQLLIDSSTIDPQTSRNISAA 99 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p~~~~~~~~~ 99 (300)
++. +-.+|+-+++..++...++.+.
T Consensus 93 ~~~----G~~vVigTtG~~~e~~~~L~~~ 117 (273)
T 1dih_A 93 RQH----GKGMVIGTTGFDEAGKQAIRDA 117 (273)
T ss_dssp HHT----TCEEEECCCCCCHHHHHHHHHH
T ss_pred HhC----CCCEEEECCCCCHHHHHHHHHh
Confidence 221 2246665555566555555443
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=85.66 E-value=0.088 Score=44.73 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=23.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
+|.++|+.|++.|++|++.+|+.++.
T Consensus 18 IG~aia~~la~~G~~V~~~~r~~~~~ 43 (274)
T 3e03_A 18 IGLAIALRAARDGANVAIAAKSAVAN 43 (274)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeccchhh
Confidence 58999999999999999999997653
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=85.44 E-value=0.66 Score=38.72 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=27.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 18 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (257)
T 3imf_A 18 MGKGMATRFAKEGARVVITGRTKEKLEEAKL 48 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.41 E-value=0.65 Score=38.70 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (252)
T 3h7a_A 19 IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVA 49 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=85.36 E-value=0.74 Score=40.25 Aligned_cols=56 Identities=7% Similarity=0.231 Sum_probs=40.1
Q ss_pred ChHHHHHHHHhCCC-------eEEEEcCC----hhhHH----HHHhCC------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY-------KMAVHDVN----CNVMK----MFSDMG------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~-------~V~~~dr~----~~~~~----~~~~~g------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|++++..|+..|+ +|.++|++ +++++ ++.... +....+..++++++|+||++...
T Consensus 17 VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD~Vi~~ag~ 93 (329)
T 1b8p_A 17 ICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDADVALLVGAR 93 (329)
T ss_dssp HHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCCEEEEeCCC
Confidence 37889999998885 79999999 55443 233311 12236778999999999998753
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.35 E-value=0.68 Score=38.17 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 26 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 56 (247)
T 3i1j_A 26 IGAAAARAYAAHGASVVLLGRTEASLAEVSD 56 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.34 E-value=0.51 Score=39.96 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN 22 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~ 22 (300)
+|.++|+.|++.|++|++.+|+
T Consensus 27 IG~a~a~~la~~G~~V~~~~r~ 48 (280)
T 3pgx_A 27 QGRSHAVRLAAEGADIIACDIC 48 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEecc
Confidence 5899999999999999999983
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.20 E-value=0.58 Score=39.50 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN 22 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~ 22 (300)
+|.++|+.|++.|++|++.+|+
T Consensus 25 IG~~ia~~l~~~G~~V~~~~r~ 46 (278)
T 3sx2_A 25 QGRAHAVRLAADGADIIAVDLC 46 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999999999987
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=85.11 E-value=0.69 Score=40.93 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=52.2
Q ss_pred EEEEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcC-CCCH
Q 022237 16 MAVHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDP 90 (300)
Q Consensus 16 V~~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~s-t~~p 90 (300)
+.++|+++++++.+.+. |. ...+|.++.++ +.|+|+||+|+....+-+.. .++. +.+++++-= +...
T Consensus 41 ~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~----al~a----GkhVl~EKPla~t~ 112 (390)
T 4h3v_A 41 NVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGDSHAEIAIA----ALEA----GKHVLCEKPLANTV 112 (390)
T ss_dssp EEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGGGHHHHHHH----HHHT----TCEEEEESSSCSSH
T ss_pred EEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHH----HHHc----CCCceeecCcccch
Confidence 44789999999888665 65 45788999886 58999999999977655543 2221 224555522 3556
Q ss_pred HHHHHHHHHH
Q 022237 91 QTSRNISAAV 100 (300)
Q Consensus 91 ~~~~~~~~~~ 100 (300)
.+++++.+.+
T Consensus 113 ~ea~~l~~~~ 122 (390)
T 4h3v_A 113 AEAEAMAAAA 122 (390)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 7777775543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=85.07 E-value=0.71 Score=38.54 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=27.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++++.+
T Consensus 20 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (255)
T 4eso_A 20 MGLATVRRLVEGGAEVLLTGRNESNIARIRE 50 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988877654
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.02 E-value=0.89 Score=37.57 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=25.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+| ++++.+++.
T Consensus 16 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 46 (246)
T 2uvd_A 16 IGRAIAIDLAKQGANVVVNYAGNEQKANEVV 46 (246)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 589999999999999999998 877766543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=85.00 E-value=1 Score=41.21 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=39.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCCh----hhHHHHHhCCCCCC--CCHHHHhhc-CCEEEEec
Q 022237 2 GFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTK--ETPFEVAEA-SDVVITML 54 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~----~~~~~~~~~g~~~~--~~~~e~~~~-adiVii~v 54 (300)
|.+.|+.|.+.|++|+++|+++ ...+.+.+.|+... ..+.+...+ +|+||++.
T Consensus 21 G~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~sp 80 (451)
T 3lk7_A 21 GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNP 80 (451)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECT
T ss_pred HHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECC
Confidence 7788999999999999999864 24566777787542 234455566 89999864
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.00 E-value=0.9 Score=37.22 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCC--CeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G--~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.| ++|++.+|++++.+.+.+
T Consensus 15 iG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~ 47 (250)
T 1yo6_A 15 IGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh
Confidence 5899999999999 999999999988776654
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=84.99 E-value=0.081 Score=45.26 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=22.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV 25 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~ 25 (300)
+|.++++.|++.|++|++.+|++++
T Consensus 21 IG~aia~~l~~~G~~V~~~~r~~~~ 45 (285)
T 3sc4_A 21 IGLAIAKRVAADGANVALVAKSAEP 45 (285)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred HHHHHHHHHHHCCCEEEEEECChhh
Confidence 5899999999999999999999874
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.98 E-value=0.91 Score=38.18 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 43 IG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 72 (272)
T 1yb1_A 43 IGRLTAYEFAKLKSKLVLWDINKHGLEETA 72 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEcCHHHHHHHH
Confidence 589999999999999999999988776554
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=84.70 E-value=1.4 Score=40.68 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhH---HHHHh-C-------CCCCCCCHHHHhhcCCEEEEecCChhhhhhh-hcCCCCc
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVM---KMFSD-M-------GVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPNGL 70 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~---~~~~~-~-------g~~~~~~~~e~~~~adiVii~vp~~~~~~~v-~~~~~~~ 70 (300)
..+++.|.+.|.+|.+||..-... ..... . .+..+.++.++++++|+|++++.++ +.+.+ +..+...
T Consensus 358 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~-~f~~~~~~~~~~~ 436 (481)
T 2o3j_A 358 IHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWD-EFVELNYSQIHND 436 (481)
T ss_dssp HHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHTTCSEEEECSCCG-GGTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHcCCCEEEEcCCcH-HhhccCHHHHHHh
Confidence 357889999999999999864221 12211 1 1234467889999999999999887 55432 1111111
Q ss_pred ccCCCCCCCeEEEEcCCCCH
Q 022237 71 LQGGNSVRPQLLIDSSTIDP 90 (300)
Q Consensus 71 l~~~~~~~~~ivid~st~~p 90 (300)
+ ....+|+|.-+...
T Consensus 437 ~-----~~~~~i~D~r~~~~ 451 (481)
T 2o3j_A 437 M-----QHPAAIFDGRLILD 451 (481)
T ss_dssp S-----CSSCEEEESSSCSC
T ss_pred c-----CCCCEEEECCCCCC
Confidence 2 12258999888764
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=84.69 E-value=0.81 Score=39.15 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|.++|+.|++.|++|++.+|+++..+.+
T Consensus 44 IG~~ia~~la~~G~~V~~~~r~~~~~~~~ 72 (296)
T 3k31_A 44 LAWGIAKAVCAQGAEVALTYLSETFKKRV 72 (296)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 58899999999999999999997654443
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=84.61 E-value=0.74 Score=41.28 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=45.9
Q ss_pred hHHHHHHHHhCCC---eEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 2 GFRMASNLMKAGY---KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 2 G~~la~~l~~~G~---~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
|..-++.+...|. +|++||+++... |... +.+.++|+||-|+........++.+ +.++.+ .++
T Consensus 227 G~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~~-----~~i~~aDivIn~vlig~~aP~Lvt~--e~v~~m-~k~ 292 (394)
T 2qrj_A 227 GSGAIDLLHKVGIPDANILKWDIKETSR------GGPF-----DEIPQADIFINCIYLSKPIAPFTNM--EKLNNP-NRR 292 (394)
T ss_dssp HHHHHHHHHHTTCCGGGEEEECHHHHTT------CSCC-----THHHHSSEEEECCCCCSSCCCSCCH--HHHCCT-TCC
T ss_pred HHHHHHHHHhCCCCcCceEEeecccccc------CCch-----hhHhhCCEEEECcCcCCCCCcccCH--HHHhcC-cCC
Confidence 4556667777897 899999987322 3321 4567999999999874322223321 233331 256
Q ss_pred CeEEEEcCC
Q 022237 79 PQLLIDSST 87 (300)
Q Consensus 79 ~~ivid~st 87 (300)
+.+|||.|.
T Consensus 293 gsVIVDVA~ 301 (394)
T 2qrj_A 293 LRTVVDVSA 301 (394)
T ss_dssp CCEEEETTC
T ss_pred CeEEEEEec
Confidence 789999875
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.38 E-value=1.1 Score=38.21 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 30 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 59 (303)
T 1yxm_A 30 IGKAIVKELLELGSNVVIASRKLERLKSAA 59 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.25 E-value=0.81 Score=38.33 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 22 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (262)
T 3pk0_A 22 IGRGIATVFARAGANVAVAGRSTADIDACVA 52 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=84.08 E-value=0.82 Score=38.61 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 42 IG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~ 72 (281)
T 3ppi_A 42 LGEATVRRLHADGLGVVIADLAAEKGKALAD 72 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=84.05 E-value=0.83 Score=38.30 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (265)
T 3lf2_A 20 IGLATVELLLEAGAAVAFCARDGERLRAAES 50 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=84.00 E-value=1 Score=39.41 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=40.1
Q ss_pred ChHHHHHHHHhC-CC-eEEEEcCChhhHHHHHhC----CC-------CCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSDM----GV-------PTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~-G~-~V~~~dr~~~~~~~~~~~----g~-------~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|++. |+ +|++++|++.+...+.+. ++ ....+..+++++.|+||-+..
T Consensus 33 iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa 100 (344)
T 2gn4_A 33 FGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAA 100 (344)
T ss_dssp HHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence 489999999999 97 999999998877655431 21 111234466778999999874
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=83.98 E-value=0.85 Score=37.78 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (247)
T 2jah_A 19 IGEATARALAAEGAAVAIAARRVEKLRALG 48 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 589999999999999999999988776654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.92 E-value=1.7 Score=36.81 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=24.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~~ 30 (300)
+|.++|+.|++.|++|++.+| ++++.+++.
T Consensus 41 IG~aia~~la~~G~~V~~~~~~~~~~~~~~~ 71 (280)
T 4da9_A 41 IGLGIARALAASGFDIAITGIGDAEGVAPVI 71 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 589999999999999999985 666665543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=83.91 E-value=1.4 Score=40.55 Aligned_cols=82 Identities=13% Similarity=0.269 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCeEEEEcCCh--hhHHHHHh-----------CCCCCCCCHHHHhhcCCEEEEecCChhhhhhh-hcCCC
Q 022237 3 FRMASNLMKAGYKMAVHDVNC--NVMKMFSD-----------MGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPN 68 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~--~~~~~~~~-----------~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v-~~~~~ 68 (300)
..+++.|.+.|.+|.+||..- +....... .++..+.++.++++++|+|++++.++ +.+.+ +..+.
T Consensus 352 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~-~f~~~~~~~~~ 430 (467)
T 2q3e_A 352 IYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWD-MFKELDYERIH 430 (467)
T ss_dssp HHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTTCSEEEECSCCG-GGGGSCHHHHH
T ss_pred HHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhCCcEEEEecCCh-hhhcCCHHHHH
Confidence 467899999999999999863 22211110 02334568889999999999999887 55432 11111
Q ss_pred CcccCCCCCCCeEEEEcCCCCH
Q 022237 69 GLLQGGNSVRPQLLIDSSTIDP 90 (300)
Q Consensus 69 ~~l~~~~~~~~~ivid~st~~p 90 (300)
..+ ....+|+|.-+...
T Consensus 431 ~~~-----~~~~~i~D~r~~~~ 447 (467)
T 2q3e_A 431 KKM-----LKPAFIFDGRRVLD 447 (467)
T ss_dssp HHS-----CSSCEEEESSCTTT
T ss_pred Hhc-----CCCCEEEeCCCcCC
Confidence 122 12245899888764
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=83.88 E-value=1.1 Score=37.26 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~ 29 (300)
+|.++++.|++.|++|++.+| ++++.+.+
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 48 (261)
T 1gee_A 19 LGKSMAIRFATEKAKVVVNYRSKEDEANSV 48 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 589999999999999999999 77766554
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.86 E-value=0.72 Score=39.91 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=36.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-------CCCC-------CCCCHHHHhh--cCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------MGVP-------TKETPFEVAE--ASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-------~g~~-------~~~~~~e~~~--~adiVii~vp 55 (300)
+|+.+++.|++.|++|++.+|+++......+ .++. ...+..++++ ..|+||-+..
T Consensus 17 iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 87 (341)
T 3enk_A 17 IGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHFAA 87 (341)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEECcc
Confidence 5899999999999999999998665433221 1211 1112345555 7899988764
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=83.79 E-value=0.58 Score=39.47 Aligned_cols=27 Identities=11% Similarity=-0.026 Sum_probs=23.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK 27 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~ 27 (300)
||.++|+.|++.|.+|.+.+|+.+..+
T Consensus 19 IG~aia~~la~~Ga~Vv~~~r~~~~~~ 45 (258)
T 4gkb_A 19 IGGAISMRLAEERAIPVVFARHAPDGA 45 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCCHH
T ss_pred HHHHHHHHHHHcCCEEEEEECCcccHH
Confidence 589999999999999999999877543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=83.71 E-value=4.3 Score=35.79 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.6
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCC
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~ 35 (300)
|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 208 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 242 (376)
T 1e3i_A 208 GLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 242 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 5556666666788 799999999999888877764
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.70 E-value=0.71 Score=38.39 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (250)
T 3nyw_A 19 IGAVIAAGLATDGYRVVLIARSKQNLEKVHD 49 (250)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776653
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=83.66 E-value=0.87 Score=38.50 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+...+
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (281)
T 3svt_A 23 IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQ 53 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=83.62 E-value=0.83 Score=38.19 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEE-cCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVH-DVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~-dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++. +|++++.+++.+
T Consensus 16 IG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~ 47 (258)
T 3oid_A 16 VGKAAAIRLAENGYNIVINYARSKKAALETAE 47 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 5899999999999999885 999887766543
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=83.47 E-value=0.81 Score=39.13 Aligned_cols=54 Identities=7% Similarity=0.167 Sum_probs=29.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhc--CCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~--adiVii~vp 55 (300)
+|+.+++.|++.||+|++.+|+++.-. +....+....+..++++. +|+||-+..
T Consensus 14 iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 14 LGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp HHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 489999999999999999998765411 111111222344556654 899998874
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.35 E-value=0.69 Score=39.12 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=21.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~ 23 (300)
+|.++|+.|++.|++|++.+|++
T Consensus 22 IG~a~a~~l~~~G~~V~~~~r~~ 44 (281)
T 3s55_A 22 MGRSHAVALAEAGADIAICDRCE 44 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHCCCeEEEEeCCc
Confidence 58999999999999999999973
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=1.2 Score=37.37 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 28 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 57 (278)
T 2bgk_A 28 IGETTAKLFVRYGAKVVIADIADDHGQKVC 57 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCChhHHHHHH
Confidence 589999999999999999999987765543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=83.33 E-value=3.2 Score=36.69 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=38.8
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCCC-------CCHHHHhh-----cCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-------ETPFEVAE-----ASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~e~~~-----~adiVii~vp~~~~~~~v~ 64 (300)
|...++.+...|. +|++.++++++.+.+.+.|+... .+..+.++ ..|+||-|+..+..+...+
T Consensus 206 G~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~ 281 (378)
T 3uko_A 206 GLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAAL 281 (378)
T ss_dssp HHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHH
Confidence 5555555666788 79999999999998887776432 12222222 3566666666543444333
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=83.29 E-value=2.2 Score=36.81 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=36.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH---HHHHhC------------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM---KMFSDM------------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~---~~~~~~------------g~~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+++.|++.||+|++..|+++.. ..+.+. .+....+..++++++|+||-+.
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A 85 (337)
T 2c29_D 17 IGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVA 85 (337)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEec
Confidence 48999999999999999988887632 222110 1222234566778888888654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.21 E-value=0.94 Score=37.93 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 25 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 54 (267)
T 1iy8_A 25 LGRATAVRLAAEGAKLSLVDVSSEGLEASK 54 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.18 E-value=0.81 Score=38.60 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN 22 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~ 22 (300)
+|.++|+.|++.|++|++.+|+
T Consensus 23 IG~a~a~~la~~G~~V~~~~r~ 44 (277)
T 3tsc_A 23 QGRAHAVRMAAEGADIIAVDIA 44 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCEEEEEecc
Confidence 5899999999999999999983
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=83.10 E-value=1 Score=37.71 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=23.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
+|.++++.|++.|++|++.+|++++.
T Consensus 39 IG~aia~~l~~~G~~V~~~~r~~~~~ 64 (260)
T 3gem_A 39 VGLHCALRLLEHGHRVIISYRTEHAS 64 (260)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 58999999999999999999998765
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=83.05 E-value=0.95 Score=38.34 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++++++.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (281)
T 3zv4_A 17 LGRALVDRFVAEGARVAVLDKSAERLRELEV 47 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=0.97 Score=37.72 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (263)
T 3ai3_A 19 IGLAIAEGFAKEGAHIVLVARQVDRLHEAA 48 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 589999999999999999999988776553
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=83.02 E-value=0.95 Score=37.97 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.++..+
T Consensus 22 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (267)
T 3t4x_A 22 IGKAIATSLVAEGANVLINGRREENVNETIK 52 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999987766543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=82.92 E-value=4.1 Score=35.91 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=26.5
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCC
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~ 35 (300)
|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 204 G~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 238 (374)
T 2jhf_A 204 GLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238 (374)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 5566666666888 799999999999888777753
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.90 E-value=1 Score=37.56 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
+|.++++.|++.|++|++.+|+....
T Consensus 28 iG~~ia~~l~~~G~~V~~~~r~~~~~ 53 (271)
T 3ek2_A 28 IAYGIAKACKREGAELAFTYVGDRFK 53 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred HHHHHHHHHHHcCCCEEEEecchhhH
Confidence 58999999999999999999885433
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.89 E-value=0.84 Score=39.09 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN 22 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~ 22 (300)
+|.++|+.|++.|++|++.+|+
T Consensus 40 IG~aia~~la~~G~~V~~~~~~ 61 (299)
T 3t7c_A 40 QGRSHAITLAREGADIIAIDVC 61 (299)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEecc
Confidence 5899999999999999999987
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.81 E-value=0.99 Score=38.30 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 75 (281)
T 4dry_A 45 VGRGIAQALSAEGYSVVITGRRPDVLDAAAG 75 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.78 E-value=0.86 Score=38.69 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 20 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 50 (280)
T 3tox_A 20 IGRAAALLFAREGAKVVVTARNGNALAELTD 50 (280)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=82.69 E-value=1 Score=37.51 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 26 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 55 (260)
T 2zat_A 26 IGLAIARRLAQDGAHVVVSSRKQENVDRTV 55 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766543
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.66 E-value=1.3 Score=36.80 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhCC---CeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAG---YKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G---~~V~~~dr~~~~~~~~ 29 (300)
+|.++++.|++.| ++|++.+|++++.+.+
T Consensus 33 IG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~ 64 (267)
T 1sny_A 33 LGLGLVKALLNLPQPPQHLFTTCRNREQAKEL 64 (267)
T ss_dssp HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEEecChhhhHHH
Confidence 5899999999999 9999999998765443
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=82.63 E-value=1 Score=37.52 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (260)
T 2z1n_A 19 LGFASALELARNGARLLLFSRNREKLEAAA 48 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.62 E-value=1 Score=37.34 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 18 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (253)
T 1hxh_A 18 VGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999987766543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.59 E-value=4.6 Score=35.58 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=26.6
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCC
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~ 35 (300)
|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 205 G~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 239 (374)
T 1cdo_A 205 GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239 (374)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence 5556666666788 799999999999888877763
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=82.58 E-value=1.5 Score=36.63 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC 23 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~ 23 (300)
+|.++++.|++.|++|++.+|++
T Consensus 23 IG~~ia~~l~~~G~~V~~~~r~~ 45 (265)
T 1qsg_A 23 IAYGIAQAMHREGAELAFTYQND 45 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEESST
T ss_pred HHHHHHHHHHHCCCEEEEEcCcH
Confidence 58999999999999999999987
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=82.52 E-value=0.42 Score=40.38 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=36.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH---hCCCCCCCCHHHHhhc-CCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEA-SDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~---~~g~~~~~~~~e~~~~-adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|++++...-. ...+....+..++++. +|+||-+..
T Consensus 14 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 14 LGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 589999999999999999999977532100 0011112233445666 999998773
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=1.1 Score=38.31 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK 27 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~ 27 (300)
+|.++|+.|++.|++|++.+|+++..+
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~ 71 (293)
T 3grk_A 45 IAWGIAKAAREAGAELAFTYQGDALKK 71 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 589999999999999999999965433
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=82.48 E-value=1.1 Score=38.69 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=38.7
Q ss_pred ChHHHHHHHHhCCC--eEEEEcC--ChhhHHH----HHhC-----CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDV--NCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr--~~~~~~~----~~~~-----g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.+++..|+..|+ ++.++|+ ++++++. +... ......+..++++++|+||++...+
T Consensus 12 vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~~ 81 (303)
T 1o6z_A 12 VGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGIP 81 (303)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCCC
Confidence 47889999998886 6889999 8766532 2211 1111112367789999999998644
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=82.46 E-value=0.41 Score=39.76 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=23.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK 27 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~ 27 (300)
+|.++++.|++.|++|++.+|++++.+
T Consensus 27 IG~~ia~~l~~~G~~V~~~~r~~~~~~ 53 (247)
T 1uzm_A 27 IGLAIAQRLAADGHKVAVTHRGSGAPK 53 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 589999999999999999999876543
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=82.39 E-value=0.7 Score=40.92 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=37.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|++.||+|++.+|++.+.......++. ...+..++++++|+||-+..
T Consensus 41 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 102 (379)
T 2c5a_A 41 IASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 102 (379)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence 48999999999999999999987654332222221 11123456778898888764
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.31 E-value=1.1 Score=36.52 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 17 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 17 IGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776643
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.30 E-value=1.1 Score=37.39 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (260)
T 2qq5_A 17 IGRGIALQLCKAGATVYITGRHLDTLRVVA 46 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=82.28 E-value=1.8 Score=35.35 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=25.6
Q ss_pred ChHHHHHHHHhCCCeEEE-EcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAV-HDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~-~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++ .+|++++.+.+.
T Consensus 13 iG~~la~~l~~~G~~v~~~~~r~~~~~~~~~ 43 (244)
T 1edo_A 13 IGKAIALSLGKAGCKVLVNYARSAKAAEEVS 43 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 589999999999999998 689988776554
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=82.28 E-value=1.1 Score=37.39 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 21 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (260)
T 2ae2_A 21 IGYGIVEELASLGASVYTCSRNQKELNDCL 50 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776553
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.23 E-value=1.1 Score=37.75 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (278)
T 1spx_A 18 IGRATAVLFAREGAKVTITGRHAERLEETR 47 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998876654
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=82.14 E-value=1.1 Score=40.20 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
..+++.|.+.|.+|.+||..-+....+ .+...+.++.++++++|+|++.+..+ ..+++..
T Consensus 332 ~~i~~~L~~~g~~v~~~DP~~~~~~~~--~~~~~~~~~~~~~~~~d~~v~~~~h~-~~~~~~~ 391 (402)
T 1dlj_A 332 KDVIDILKSKDIKIIIYEPMLNKLESE--DQSVLVNDLENFKKQANIIVTNRYDN-ELQDVKN 391 (402)
T ss_dssp HHHHHHHHTSSCEEEEECTTCSCCCTT--CCSEECCCHHHHHHHCSEEECSSCCG-GGGGGGG
T ss_pred HHHHHHHHHCCCEEEEECCCCChHHHH--cCCeecCCHHHHHhCCcEEEEecCCh-HHHHHhh
Confidence 457889999999999999853321111 23344567899999999999998776 7777654
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.13 E-value=1.1 Score=37.87 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (280)
T 1xkq_A 18 IGRTTAILFAQEGANVTITGRSSERLEETR 47 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998776654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=82.12 E-value=0.21 Score=41.30 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
+|..+++.|++.|++|++.+|++++.
T Consensus 13 iG~~l~~~L~~~g~~V~~~~r~~~~~ 38 (255)
T 2dkn_A 13 IGAALKELLARAGHTVIGIDRGQADI 38 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHc
Confidence 58999999999999999999987654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=82.12 E-value=1.1 Score=37.38 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=26.0
Q ss_pred ChHHHHHHHHh-CCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMK-AGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~-~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++ .|++|++.+|++++.+.+.
T Consensus 16 IG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~ 46 (276)
T 1wma_A 16 IGLAIVRDLCRLFSGDVVLTARDVTRGQAAV 46 (276)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCChHHHHHHH
Confidence 58999999999 9999999999988766543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=1.4 Score=37.34 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN 22 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~ 22 (300)
+|.++|+.|++.|++|++.||+
T Consensus 23 IG~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 23 QGRSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999999999987
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=1.1 Score=36.93 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 23 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (254)
T 2wsb_A 23 IGLEICRAFAASGARLILIDREAAALDRAA 52 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.11 E-value=1.1 Score=37.63 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 33 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 62 (267)
T 1vl8_A 33 LGFGIAQGLAEAGCSVVVASRNLEEASEAA 62 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776553
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=2 Score=37.90 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=38.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh-cCCEEEEe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITM 53 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~-~adiVii~ 53 (300)
+|...|+.|...|.+|+++|+++++.+...+.|+... ++.+.+. .||+++-|
T Consensus 186 VG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~ 238 (355)
T 1c1d_A 186 VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC 238 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh
Confidence 4788999999999999999999876333333465443 5567766 89999854
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=82.07 E-value=2.6 Score=36.81 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=42.6
Q ss_pred ChHHHHHHHHhCC-CeE-EEEcCChhhHHHHHh-CC------------------CCCCCCHHHHhhcCCEEEEecCChhh
Q 022237 1 MGFRMASNLMKAG-YKM-AVHDVNCNVMKMFSD-MG------------------VPTKETPFEVAEASDVVITMLPSSSH 59 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V-~~~dr~~~~~~~~~~-~g------------------~~~~~~~~e~~~~adiVii~vp~~~~ 59 (300)
||..+++.|.+.. .+| .+.|++++++..+.+ .| .....++++.+.++|+|++|+|....
T Consensus 13 iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~~h 92 (334)
T 2czc_A 13 IGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIG 92 (334)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTTHH
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCcccc
Confidence 5778888887653 465 466888877765543 23 23446788888899999999998753
Q ss_pred h
Q 022237 60 V 60 (300)
Q Consensus 60 ~ 60 (300)
.
T Consensus 93 ~ 93 (334)
T 2czc_A 93 A 93 (334)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.05 E-value=1.1 Score=37.70 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=26.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 33 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 62 (273)
T 1ae1_A 33 IGYAIVEELAGLGARVYTCSRNEKELDECL 62 (273)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776553
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.04 E-value=1.1 Score=36.63 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 19 IGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.96 E-value=1.1 Score=37.35 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (262)
T 1zem_A 19 IGLATALRLAEEGTAIALLDMNREALEKAE 48 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=81.80 E-value=1 Score=38.85 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=36.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHH------HHHh-CC-------CCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMK------MFSD-MG-------VPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~------~~~~-~g-------~~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+++.|++.||+|++..|++++.. .+.. .+ +....+..++++++|+||-+.
T Consensus 21 IG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 21 VASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 589999999999999999888765321 2211 11 122234567788899988765
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=81.78 E-value=1.3 Score=37.09 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=25.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh-HHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV-MKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~-~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++ .+++.+
T Consensus 21 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 52 (269)
T 2h7i_A 21 IAFHIARVAQEQGAQLVLTGFDRLRLIQRITD 52 (269)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCHHHHHHHHT
T ss_pred hHHHHHHHHHHCCCEEEEEecChHHHHHHHHH
Confidence 5899999999999999999999876 355543
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=81.76 E-value=7.2 Score=32.39 Aligned_cols=78 Identities=12% Similarity=0.199 Sum_probs=47.7
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhh-cCCEEEEecCChhhhhhhhcCCCCcccCCCCC
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSV 77 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~-~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~ 77 (300)
||+.+++.+.+. ++++. ++|++ .++++.+. .+|+||-+.+.. .+.+.+.. .++.
T Consensus 12 mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~-a~~~~~~~---a~~~---- 68 (245)
T 1p9l_A 12 VGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPD-VVMGNLEF---LIDN---- 68 (245)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCTT-THHHHHHH---HHHT----
T ss_pred HHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccChH-HHHHHHHH---HHHc----
Confidence 788999988865 89876 56764 34555554 799999777444 55544421 2221
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 78 RPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 78 ~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
+-.+|+-+++..++...++.+...
T Consensus 69 g~~~VigTTG~~~e~~~~l~~aa~ 92 (245)
T 1p9l_A 69 GIHAVVGTTGFTAERFQQVESWLV 92 (245)
T ss_dssp TCEEEECCCCCCHHHHHHHHHHHH
T ss_pred CCCEEEcCCCCCHHHHHHHHHHHH
Confidence 224666555566665666655544
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=81.74 E-value=1.1 Score=38.32 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 53 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 83 (293)
T 3rih_A 53 IGRGIATVFARAGANVAVAARSPRELSSVTA 83 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=81.71 E-value=0.98 Score=37.54 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=25.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|.++++.|++.|++|++.+|++++.+.+
T Consensus 13 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 41 (254)
T 1zmt_A 13 GGMGSALRLSEAGHTVACHDESFKQKDEL 41 (254)
T ss_dssp THHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 69999999999999999999998876554
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.60 E-value=1.5 Score=37.03 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVN 22 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~ 22 (300)
+|.++|+.|++.|++|++.+|+
T Consensus 22 IG~~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 22 QGRSHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEccc
Confidence 5899999999999999999988
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=81.60 E-value=1.3 Score=38.15 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=38.5
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhC-CC-----CCCC---CHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GV-----PTKE---TPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~-g~-----~~~~---~~~e~~~~adiVii~v 54 (300)
+|+.+++.|.+. |++|++.+|++++...+... ++ ...+ ...++++++|+||-+.
T Consensus 12 iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 12 IGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp HHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 489999999998 89999999998876554322 21 1111 2445677899999874
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=81.58 E-value=3.3 Score=33.86 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=23.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNV 25 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~ 25 (300)
+|.++++.|++.|++|++.+|++++
T Consensus 14 iG~~~a~~l~~~G~~V~~~~r~~~~ 38 (239)
T 2ekp_A 14 IGRAIAEALVARGYRVAIASRNPEE 38 (239)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 5899999999999999999999876
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=81.45 E-value=0.88 Score=42.83 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC--C-CCCCCCHHH-HhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--G-VPTKETPFE-VAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~--g-~~~~~~~~e-~~~~adiVii~vp~~~ 58 (300)
+|..+|+.|.+.|++|.+.|.++++++++... | ......+.+ -++++|.+++++++++
T Consensus 359 ~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~ 420 (565)
T 4gx0_A 359 IGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS 420 (565)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch
Confidence 37899999999999999999999987765311 1 111122333 2578999999998874
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.42 E-value=1.2 Score=37.87 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (283)
T 3v8b_A 40 IGRATALALAADGVTVGALGRTRTEVEEVAD 70 (283)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=81.42 E-value=1.8 Score=37.53 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=37.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh----hHHHHHh-------CCC-------CCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN----VMKMFSD-------MGV-------PTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~----~~~~~~~-------~g~-------~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|.+.|++|++.+|++. ....+.. .++ ....+..++++++|+||-+..
T Consensus 37 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 109 (351)
T 3ruf_A 37 IGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAA 109 (351)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEEEECCc
Confidence 489999999999999999999653 3333332 221 111234556778999998874
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.38 E-value=3.5 Score=35.93 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=28.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 34 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~ 34 (300)
+|..+++.+...|.+|++.++++++.+.+.+.|+
T Consensus 182 iG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~ 215 (347)
T 2hcy_A 182 LGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG 215 (347)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC
Confidence 4778888888899999999999998877776654
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.37 E-value=1.8 Score=36.79 Aligned_cols=76 Identities=8% Similarity=0.100 Sum_probs=47.0
Q ss_pred ChHHHHHHHHhCCC---eEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEE--ecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT--MLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~---~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii--~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
+|.++|+.|++.|+ .|++.+|++++.+++.+. ..+.....++.++ =+.+..+++.++.+.......
T Consensus 45 IG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~-- 115 (287)
T 3rku_A 45 IGKATALEYLEASNGDMKLILAARRLEKLEELKKT-------IDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKD-- 115 (287)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-------HHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGGGCS--
T ss_pred HHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHH-------HHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCC--
Confidence 58999999999998 999999999988776542 1111112233333 345666777777654332221
Q ss_pred CCCCeEEEEcCCC
Q 022237 76 SVRPQLLIDSSTI 88 (300)
Q Consensus 76 ~~~~~ivid~st~ 88 (300)
=.++|+..+.
T Consensus 116 ---iD~lVnnAG~ 125 (287)
T 3rku_A 116 ---IDILVNNAGK 125 (287)
T ss_dssp ---CCEEEECCCC
T ss_pred ---CCEEEECCCc
Confidence 1577776653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=81.28 E-value=5 Score=35.29 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=25.9
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCC
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~ 35 (300)
|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 204 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 238 (373)
T 1p0f_A 204 GFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 238 (373)
T ss_dssp HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc
Confidence 5555555555687 799999999999888887764
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.24 E-value=1.2 Score=37.54 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 41 IG~aia~~L~~~G~~V~~~~r~~~~~~~~~ 70 (276)
T 2b4q_A 41 IGQMIAQGLLEAGARVFICARDAEACADTA 70 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.20 E-value=1.2 Score=37.08 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 35 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 65 (266)
T 3o38_A 35 IGSTTARRALLEGADVVISDYHERRLGETRD 65 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.20 E-value=1.2 Score=37.84 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|++.+|++++.++..+
T Consensus 24 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~ 54 (311)
T 3o26_A 24 IGFEICKQLSSNGIMVVLTCRDVTKGHEAVE 54 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=81.17 E-value=1.3 Score=36.36 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 19 IGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776644
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=81.07 E-value=3.6 Score=35.71 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=28.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 34 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~ 34 (300)
+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus 176 vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa 209 (339)
T 1rjw_A 176 LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 209 (339)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC
Confidence 5777888888889999999999999988877665
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=80.84 E-value=1.2 Score=39.77 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=51.6
Q ss_pred hHHHHHHHHhCCC-eEEEEcCCh-------hhHHHHHhC------CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCC
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNC-------NVMKMFSDM------GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 67 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~-------~~~~~~~~~------g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~ 67 (300)
|.++|+-+...|. +|+++|++- ++++.+... ......++.|+++++|++|=+.....-.++++..
T Consensus 200 G~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sapgl~T~EmVk~- 278 (398)
T 2a9f_A 200 GLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSAPGVLKAEWISK- 278 (398)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCSTTCCCHHHHHT-
T ss_pred HHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCCCCCCCHHHHHh-
Confidence 6788888998898 899999873 223332221 1122457899999999987775422223334432
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHH
Q 022237 68 NGLLQGGNSVRPQLLIDSSTIDPQT 92 (300)
Q Consensus 68 ~~~l~~~~~~~~~ivid~st~~p~~ 92 (300)
+ .++.+|+++|+-.|+.
T Consensus 279 ------M--a~~pIIfalsNPt~E~ 295 (398)
T 2a9f_A 279 ------M--AARPVIFAMANPIPEI 295 (398)
T ss_dssp ------S--CSSCEEEECCSSSCSS
T ss_pred ------h--CCCCEEEECCCCCccC
Confidence 2 2347999999976543
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=80.73 E-value=0.72 Score=38.51 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
+|.++++.|++.|++|++.+|++++.
T Consensus 33 IG~aia~~l~~~G~~V~~~~r~~~~~ 58 (253)
T 2nm0_A 33 IGLAIARAFADAGDKVAITYRSGEPP 58 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHhh
Confidence 58999999999999999999987643
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.65 E-value=4.3 Score=35.39 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=26.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 34 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~ 34 (300)
|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus 181 G~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 213 (352)
T 1e3j_A 181 GLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA 213 (352)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC
Confidence 566666666689999999999999988877775
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=80.65 E-value=1.3 Score=37.13 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=26.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcC-ChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDV-NCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr-~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+| ++++.+++.
T Consensus 23 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (276)
T 1mxh_A 23 IGHSIAVRLHQQGFRVVVHYRHSEGAAQRLV 53 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHHH
Confidence 589999999999999999999 887776554
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.65 E-value=1.3 Score=37.87 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 38 IG~aia~~L~~~G~~V~~~~r~~~~~~~~~ 67 (297)
T 1xhl_A 38 IGRSAAVIFAKEGAQVTITGRNEDRLEETK 67 (297)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999998776553
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=80.53 E-value=1.2 Score=38.72 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=36.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH--HhCCCCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF--SDMGVPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~--~~~g~~~~~~~~e~~~~adiVii~vp 55 (300)
+|+.+++.|++.|++|++.+|++.. ..+ ....+....+..++++++|+||-+..
T Consensus 31 iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~ 86 (347)
T 4id9_A 31 VGRAVVAALRTQGRTVRGFDLRPSG-TGGEEVVGSLEDGQALSDAIMGVSAVLHLGA 86 (347)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCS-SCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCC-CCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence 5899999999999999999998765 000 00011112234567789999998763
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=80.51 E-value=1.3 Score=37.28 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|.++++.|++.|++|++.+|++++.+++.
T Consensus 34 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 63 (277)
T 2rhc_B 34 IGLEIARRLGKEGLRVFVCARGEEGLRTTL 63 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.46 E-value=1.4 Score=36.54 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 19 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (264)
T 2pd6_A 19 IGRAVSVRLAGEGATVAACDLDRAAAQETVR 49 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 5899999999999999999999988777654
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=80.41 E-value=1.4 Score=36.22 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~ 30 (300)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 14 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 43 (250)
T 2cfc_A 14 NGLAIATRFLARGDRVAALDLSAETLEETA 43 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776654
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=80.27 E-value=0.97 Score=38.02 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=25.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|.++++.|++.|++|++.+|++++.+.+
T Consensus 46 IG~~la~~L~~~G~~V~~~~r~~~~~~~~ 74 (279)
T 3ctm_A 46 IGWAVAEAYAQAGADVAIWYNSHPADEKA 74 (279)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSSCCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999998765544
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.25 E-value=1.4 Score=36.81 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=25.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|.++++.|++.|++|++.+|++++.+.+
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (267)
T 2gdz_A 19 IGRAFAEALLLKGAKVALVDWNLEAGVQC 47 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 58999999999999999999998876554
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=80.18 E-value=0.67 Score=38.94 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=52.8
Q ss_pred ChHHHHHHHHhCCCeE-EEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V-~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||+.+++. . ++++ .+|+ ++..++ |...++++++.++++|+|+.|-+.. ++++... .+|. .|
T Consensus 23 IG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~~~-av~e~~~---~iL~-----aG 84 (253)
T 1j5p_A 23 IGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECASPE-AVKEYSL---QILK-----NP 84 (253)
T ss_dssp HHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSCHH-HHHHHHH---HHTT-----SS
T ss_pred HHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCCHH-HHHHHHH---HHHH-----CC
Confidence 46666666 4 7775 5778 444433 6666778888888999999999655 7776442 2443 33
Q ss_pred eEEEEcCCC---CHHHHHHHHHHHhh
Q 022237 80 QLLIDSSTI---DPQTSRNISAAVSN 102 (300)
Q Consensus 80 ~ivid~st~---~p~~~~~~~~~~~~ 102 (300)
.-++-+|.. .+...+++.+..++
T Consensus 85 ~dvv~~S~gaLad~~l~~~L~~aA~~ 110 (253)
T 1j5p_A 85 VNYIIISTSAFADEVFRERFFSELKN 110 (253)
T ss_dssp SEEEECCGGGGGSHHHHHHHHHHHHT
T ss_pred CCEEEcChhhhcCHHHHHHHHHHHHH
Confidence 556655643 44545555555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 300 | ||||
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 1e-32 | |
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 3e-32 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 4e-27 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 6e-25 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 4e-24 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 6e-19 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 2e-16 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 2e-16 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 5e-14 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 3e-13 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 2e-10 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 9e-10 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 5e-07 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 116 bits (291), Expect = 1e-32
Identities = 64/163 (39%), Positives = 85/163 (52%), Gaps = 12/163 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG M+ NL+KAGY + V D N + G T T +AE DV+ITMLP+S HV
Sbjct: 11 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHV 70
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V G NG+++G +LID S+I P SR I + LK K MLDA
Sbjct: 71 KEVALGENGIIEGAKPGT--VLIDMSSIAPLASREI-----SDALKAK-----GVEMLDA 118
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 163
PVSGG A GTL+ MVGG + + L +M + ++ G
Sbjct: 119 PVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 114 bits (285), Expect = 3e-32
Identities = 57/129 (44%), Positives = 80/129 (62%)
Query: 165 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 224
G G AK+CNN +AV M+G +EA+ LG + G+ A L +I+ SS W+ + YNP P
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 225 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 284
GVME PASR+Y GGF ++LMAKDL LA +A+ P+ S A +Y L + G+ +
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 285 DFSCVFQHY 293
DFS V + +
Sbjct: 122 DFSVVQKLF 130
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 101 bits (253), Expect = 4e-27
Identities = 66/163 (40%), Positives = 93/163 (57%), Gaps = 12/163 (7%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG MA+NL+KAGY + V D+ + + G + + + +DVVI+MLP+S HV
Sbjct: 12 MGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHV 71
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+Y +GLL L+++ STI P ++R I AA +E+ MLDA
Sbjct: 72 EGLYLDDDGLLAHIAP--GTLVLECSTIAPTSARKIHAA-----ARER-----GLAMLDA 119
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 163
PVSGG A AGTLTFMVGG +A + A+PLF +MG+N + G
Sbjct: 120 PVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 95.1 bits (236), Expect = 6e-25
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 225
G G K+ N + +A+++ +SEALTL G++ + + + A D+ P+
Sbjct: 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVM 62
Query: 226 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 285
P GF L KDL AL ++ VG PLT+ ++ L +GH + D
Sbjct: 63 DRNFKP-------GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDD 115
Query: 286 FSCVFQHY 293
S + +Y
Sbjct: 116 HSALACYY 123
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 92.8 bits (230), Expect = 4e-24
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 225
G G A K NN +AV++ E L G+SA +++N+SS R ++++ P
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRV 61
Query: 226 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 285
+ R + FA L+ KDL +A+ PL A+++Y D
Sbjct: 62 LT------RAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDAD 115
Query: 286 FSCVFQHY 293
+
Sbjct: 116 HVEALRLL 123
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 79.9 bits (196), Expect = 6e-19
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG+ MA +L + + + ++ + G + V+ T LP++ V
Sbjct: 11 MGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERV--AEARVIFTCLPTTREV 68
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+V +D+++ +P+ SR ++ L+EK LDA
Sbjct: 69 YEVAEALYP-----YLREGTYWVDATSGEPEASRRLAER-----LREK-----GVTYLDA 113
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 163
PVSGG AEAGTLT M+GG E+A + +P L+ K ++ G
Sbjct: 114 PVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVG 155
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 73.0 bits (178), Expect = 2e-16
Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 24/163 (14%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
+ +AS L G ++ + + V ET E + VVI+ + +
Sbjct: 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL 70
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+ +D + I P+T R S+ + +DA
Sbjct: 71 GAARRAGRH--------VRGIYVDINNISPETVRMASSLIEKG------------GFVDA 110
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 163
+ G V A G + + G N G
Sbjct: 111 AIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNIEVRG 149
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 73.1 bits (178), Expect = 2e-16
Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 11/173 (6%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKET-PFEVAEASDVVITMLPSSSH 59
MG +A N+ + G+K+AV + + + F + E + L
Sbjct: 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRK 71
Query: 60 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 119
L + ++ +D + + + ++ L
Sbjct: 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH-----FKDQGRRAQQLEAAGLRFLG 126
Query: 120 APVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI----YCGGAGNG 168
+SGG A G F GG+ ++ +P+ + G+G
Sbjct: 127 MGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 68.1 bits (166), Expect = 5e-14
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 16/130 (12%)
Query: 31 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 90
D+G+ E E +D+VIT LP + D+ + G ++ + TI
Sbjct: 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEG-----AIVTHACTIPT 180
Query: 91 QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 150
I L + + + + G V + SE+A
Sbjct: 181 TKFAKIFKD-----LGRE------DLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYE 229
Query: 151 LFLSMGKNTI 160
+
Sbjct: 230 IGKIARGKAF 239
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 63.9 bits (154), Expect = 3e-13
Identities = 15/163 (9%), Positives = 38/163 (23%), Gaps = 22/163 (13%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
+ L + + + + +++ T + E + VV ++ ++
Sbjct: 10 LTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF-VIVPDRYI 68
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
V N N + + + KK + +
Sbjct: 69 KTVANHLN---------------------LGDAVLVHCSGFLSSEIFKKSGRASIHPNFS 107
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 163
S + F + G E K + +
Sbjct: 108 FSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP 150
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 56.5 bits (135), Expect = 2e-10
Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 8/161 (4%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
MG + N+ G+ + + + + F K T A + + +++ L +
Sbjct: 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA--KGTKVLGAHSLEEMVSKLKKPRRI 70
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
+ + + + P L I ID S + + + + + + + +
Sbjct: 71 ILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEY-----RDTMRRCRDLKDKGILFVGS 125
Query: 121 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 161
VSGG A G + M GG+++A+ K +F +
Sbjct: 126 GVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGT 165
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 54.1 bits (129), Expect = 9e-10
Identities = 18/159 (11%), Positives = 41/159 (25%), Gaps = 32/159 (20%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
+G A L +GY +++ D + + + + + P +
Sbjct: 21 LGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTE- 79
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
LL D +++ + + V+
Sbjct: 80 ------------------NMLLADLTSVKREPLAKMLEV------------HTGAVLGLH 109
Query: 121 PVSGGVLAAEAG-TLTFMVGGSEDAYQAAKPLFLSMGKN 158
P+ G +A+ A + G + Y+ G
Sbjct: 110 PMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 148
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 46.3 bits (108), Expect = 5e-07
Identities = 15/169 (8%), Positives = 44/169 (26%), Gaps = 21/169 (12%)
Query: 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 60
+G +A +L + G+ + + + + + E + ++ T
Sbjct: 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVER-----QLVDEAGQDLSLLQTAKIIFLCT 65
Query: 61 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 120
P + ++ D +++ + + + +
Sbjct: 66 PIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPA---------SQLWSGFIGGHPMAG 116
Query: 121 PVSGGVLAAEAG-------TLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 162
+ G+ AE LT + + + +G C
Sbjct: 117 TAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 300 | |||
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.96 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.96 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.91 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.91 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.89 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.88 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.88 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.85 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.8 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.72 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.71 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.61 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.51 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.49 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.43 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.37 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.32 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.21 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.1 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.02 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.89 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.88 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 98.84 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.59 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 98.46 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.23 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.96 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.93 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.81 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.79 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.66 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.61 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.57 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.57 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.47 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.41 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.33 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.24 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.21 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 97.14 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.0 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.88 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.74 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.48 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.37 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.31 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 96.16 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.13 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.02 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.02 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.99 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 95.85 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 95.81 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 95.76 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 95.68 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.48 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 95.4 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.4 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.31 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.14 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 94.91 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.87 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.85 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.51 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.42 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 94.23 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.08 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.03 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 94.02 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.89 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.86 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 93.58 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.5 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 93.5 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 93.47 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.42 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 93.41 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.35 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 93.33 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 93.28 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.2 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.9 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.75 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 92.7 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.54 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 92.52 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.39 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.38 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.29 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 92.26 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.08 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 91.8 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.45 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 91.27 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 91.23 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 91.17 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 90.87 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 90.77 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.76 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 90.71 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 90.7 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.62 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 90.59 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.5 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 90.41 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 90.24 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.17 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 90.05 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.04 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 89.97 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 89.9 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.89 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 89.85 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 89.8 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.78 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.6 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 89.55 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 89.49 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.46 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.35 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.34 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.32 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 89.29 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 89.28 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.11 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 89.03 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 88.82 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.69 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 88.62 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.31 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 87.96 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.72 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 87.56 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.39 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 87.34 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 87.3 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.29 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 87.06 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 87.01 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 86.17 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 86.02 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 85.79 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 85.64 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 85.22 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 85.2 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 84.7 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 84.0 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 83.95 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 83.83 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 83.69 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 83.28 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 82.75 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 82.58 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 82.56 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 82.42 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 82.36 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 82.35 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 82.1 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 81.45 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 80.8 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.4 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 80.23 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 80.17 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 80.15 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=3e-29 Score=200.24 Aligned_cols=151 Identities=42% Similarity=0.592 Sum_probs=140.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|+++||+|++|||++++++.+.+.+...+.++.|+++++|+||+|||++.++++|+....+++.. ..+++
T Consensus 11 MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~--~~~g~ 88 (161)
T d1vpda2 11 MGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEG--AKPGT 88 (161)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHH--CCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhc--cCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999998766666654 45679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|.+++++++.+.+. +++|+++|++|++..+..|++++++||+++.+++++++|+.++.+++
T Consensus 89 iiid~sT~~p~~~~~~~~~~~~~----------g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~ 158 (161)
T d1vpda2 89 VLIDMSSIAPLASREISDALKAK----------GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 158 (161)
T ss_dssp EEEECSCCCHHHHHHHHHHHHTT----------TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc----------CCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 99999999999999999998752 38999999999999999999999999999999999999999999999
Q ss_pred eeC
Q 022237 161 YCG 163 (300)
Q Consensus 161 ~~g 163 (300)
|+|
T Consensus 159 ~~G 161 (161)
T d1vpda2 159 HTG 161 (161)
T ss_dssp EEE
T ss_pred ECC
Confidence 986
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=2.8e-28 Score=194.70 Aligned_cols=151 Identities=43% Similarity=0.676 Sum_probs=139.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++||++|.++||+|++|||++++.+.+...+.....++.|+++.+|+|++|||++.++++++....++... ..+++
T Consensus 12 MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~--l~~g~ 89 (162)
T d3cuma2 12 MGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAH--IAPGT 89 (162)
T ss_dssp THHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHH--SCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccccccc--CCCCC
Confidence 8999999999999999999999999999999999888999999999999999999999999998776666554 45678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+||++|++++++.+.+.+. +++|+++|++|+|..+..|++++++||+++.+++++++|+.++.+++
T Consensus 90 iiid~st~~p~~~~~~~~~~~~~----------gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~ 159 (162)
T d3cuma2 90 LVLECSTIAPTSARKIHAAARER----------GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIF 159 (162)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHC----------CCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccE
Confidence 99999999999999999998763 38999999999999999999999999999999999999999999999
Q ss_pred eeC
Q 022237 161 YCG 163 (300)
Q Consensus 161 ~~g 163 (300)
|+|
T Consensus 160 ~~G 162 (162)
T d3cuma2 160 HAG 162 (162)
T ss_dssp EEE
T ss_pred ECc
Confidence 986
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=3.5e-24 Score=165.15 Aligned_cols=132 Identities=43% Similarity=0.718 Sum_probs=122.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 022237 164 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 243 (300)
Q Consensus 164 ~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (300)
|.|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+.+........+..++|+++|++.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 46999999999999999999999999999999999999999999999999999887666554555567788999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 244 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 244 ~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
.+.||++++.+++++.|+|+|+++.+.++|+.+.++|+|++|+++++++|.+
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~ 132 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999998865
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.91 E-value=8.6e-25 Score=176.65 Aligned_cols=144 Identities=16% Similarity=0.239 Sum_probs=125.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC--------CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCccc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 72 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--------~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~ 72 (300)
||.+||++|.++||+|++|||++++++++.+.+.. ...++.+++..+|++++++|++.++.++..+ +++
T Consensus 13 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v~~~---l~~ 89 (176)
T d2pgda2 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEK---LVP 89 (176)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHHHHHH---HHh
Confidence 89999999999999999999999999999887542 3345567778999999999999999888764 333
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHH
Q 022237 73 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 152 (300)
Q Consensus 73 ~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll 152 (300)
. ..++++|||+||+.|.+++++.+.+.+. +++|+|+|++|++..+..|+ ++++||+++.+++++++|
T Consensus 90 ~--~~~g~iiid~sT~~~~~~~~~~~~~~~~----------g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il 156 (176)
T d2pgda2 90 L--LDIGDIIIDGGNSEYRDTMRRCRDLKDK----------GILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIF 156 (176)
T ss_dssp H--CCTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHH
T ss_pred c--cccCcEEEecCcchhHHHHHHHHHHHhc----------CCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHH
Confidence 2 3466899999999999999999988753 38999999999999999998 899999999999999999
Q ss_pred HhcCCCeE
Q 022237 153 LSMGKNTI 160 (300)
Q Consensus 153 ~~lg~~~~ 160 (300)
+.++.++.
T Consensus 157 ~~~~~kv~ 164 (176)
T d2pgda2 157 QGIAAKVG 164 (176)
T ss_dssp HHHSCBCT
T ss_pred HHHhcccC
Confidence 99998864
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=1.6e-23 Score=161.03 Aligned_cols=125 Identities=29% Similarity=0.427 Sum_probs=116.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 022237 164 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 243 (300)
Q Consensus 164 ~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (300)
++|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.|+.++.+.| . +.+++|+++|++.
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~--~-----~~~~~~~~~f~~~ 73 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP--M-----VMDRNFKPGFRID 73 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHH--H-----HHTTCCCCSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccc--h-----hhhccCCCCchHH
Confidence 36999999999999999999999999999999999999999999999998888765533 2 4578999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhc
Q 022237 244 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 295 (300)
Q Consensus 244 ~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 295 (300)
.+.||++++.+++++.|+|+|+++.+.++|+.+.++|+|++|++++++++++
T Consensus 74 l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~ 125 (133)
T d1vpda1 74 LHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999864
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=4.6e-23 Score=163.10 Aligned_cols=146 Identities=29% Similarity=0.440 Sum_probs=124.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+||++|.++||.+ +|||++++..++.+.+..... ..+.+.++|++|+++|++.++..+..+ ++.. ..+++
T Consensus 11 MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~v~~~~~~---l~~~--~~~~~ 83 (156)
T d2cvza2 11 MGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAEA---LYPY--LREGT 83 (156)
T ss_dssp THHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHH---HTTT--CCTTE
T ss_pred HHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCccc-ccccccceeEEEecccchhhhhhhhcc---cccc--ccccc
Confidence 9999999999999865 799999988888776544443 456677999999999999888777643 3433 35679
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
++||+||+.|.+++++++.+.+. +++|+|+|++|++..+..|++++++||+++.+++++++| .++.+++
T Consensus 84 ~iid~sT~~p~~~~~~~~~~~~~----------gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~~~v~ 152 (156)
T d2cvza2 84 YWVDATSGEPEASRRLAERLREK----------GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVV 152 (156)
T ss_dssp EEEECSCCCHHHHHHHHHHHHTT----------TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEE
T ss_pred cccccccCCHHHHHHHHHHHHHc----------CCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-HhcCcCE
Confidence 99999999999999999998752 389999999999999999999999999999999999999 5999999
Q ss_pred eeCC
Q 022237 161 YCGG 164 (300)
Q Consensus 161 ~~g~ 164 (300)
|+||
T Consensus 153 ~~GP 156 (156)
T d2cvza2 153 HVGP 156 (156)
T ss_dssp EEES
T ss_pred EeCc
Confidence 9986
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=6.4e-23 Score=157.50 Aligned_cols=126 Identities=25% Similarity=0.299 Sum_probs=115.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhh
Q 022237 165 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKL 244 (300)
Q Consensus 165 ~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (300)
+|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.|+..+.+.| . .+.+++|+++|+++.
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p--~----~~~~~~~~~~f~~~~ 74 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIP--Q----RVLTRAFPKTFALGL 74 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHH--H----HTTTSCCCCSSBHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhh--H----HHHHHhhhhhhHHHH
Confidence 5899999999999999999999999999999999999999999999988887554322 1 256789999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHHhcC
Q 022237 245 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 296 (300)
Q Consensus 245 ~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (300)
+.||++++.+++++.|+|+|+.+.+.++|+.+.++|+|++|++++++++++.
T Consensus 75 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~ 126 (132)
T d2cvza1 75 LVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERW 126 (132)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHH
T ss_pred HhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998753
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.85 E-value=6.8e-22 Score=159.69 Aligned_cols=152 Identities=16% Similarity=0.265 Sum_probs=127.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC--------CCCH---HHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--------KETP---FEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--------~~~~---~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
||.+||++|.++||+|++|||++++++++.+.+... ..+. ...+..++.++++++....+..++.....
T Consensus 12 MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (178)
T d1pgja2 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKK 91 (178)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchhhhhhhhhhh
Confidence 899999999999999999999999999998875432 1222 23456889999999988788777754322
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHH
Q 022237 70 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 149 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~ 149 (300)
. ..++++++|+||+.|..++++.+.+... +++|+++|+++++..+..|+ ++++||+++.+++++
T Consensus 92 ~-----~~~~~iii~~st~~~~~~~~~~~~l~~~----------~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~ 155 (178)
T d1pgja2 92 V-----FEKGDILVDTGNAHFKDQGRRAQQLEAA----------GLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIR 155 (178)
T ss_dssp H-----CCTTCEEEECCCCCHHHHHHHHHHHHTT----------TCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHH
T ss_pred h-----ccccceecccCccchhHHHHHHHHHhhc----------ceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHH
Confidence 2 2456899999999999999999988752 38999999999999999998 889999999999999
Q ss_pred HHHHhcCCCeE----eeCCccHH
Q 022237 150 PLFLSMGKNTI----YCGGAGNG 168 (300)
Q Consensus 150 ~ll~~lg~~~~----~~g~~g~a 168 (300)
++|+.++.++. |+|+.|++
T Consensus 156 pil~~~~~~~~~~~~~~g~~G~G 178 (178)
T d1pgja2 156 PIVEAAAAKADDGRPCVTMNGSG 178 (178)
T ss_dssp HHHHHHSCBCTTSCBSCCCCCST
T ss_pred HHHHHHhccccCCCCccCCCCCC
Confidence 99999999888 88887753
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.80 E-value=7.8e-20 Score=143.63 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=111.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++||++|.++||+|++||+++.+...+...+.....++.|+++++|+||+|||++.. .+++... .. ..++
T Consensus 11 mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~-~~~~~~~---~~----~~~~ 82 (152)
T d1i36a2 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVA-LGAARRA---GR----HVRG 82 (152)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGH-HHHHHHH---HT----TCCS
T ss_pred HHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchH-HHHHHhh---cc----cCCc
Confidence 89999999999999999999998888777777777778899999999999999999854 4454322 11 1237
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
++||+||++|.+.+++++.++. ..|+++|++++++.+..+...++.|++.+.+++ |+.+|.++.
T Consensus 83 ~~id~st~~p~~~~~l~~~~~~------------~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~g~~i~ 146 (152)
T d1i36a2 83 IYVDINNISPETVRMASSLIEK------------GGFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRYGLNIE 146 (152)
T ss_dssp EEEECSCCCHHHHHHHHHHCSS------------SEEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGGTCEEE
T ss_pred eeeccCcCCHHHHHHHHHHHhc------------cCCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHcCCeee
Confidence 9999999999999999988753 468999999998888777755444445554443 678999999
Q ss_pred eeCC
Q 022237 161 YCGG 164 (300)
Q Consensus 161 ~~g~ 164 (300)
++|+
T Consensus 147 ~~G~ 150 (152)
T d1i36a2 147 VRGR 150 (152)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9885
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=3e-19 Score=140.32 Aligned_cols=142 Identities=11% Similarity=-0.004 Sum_probs=105.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.+|+++|.+.++.+.+|+|++++++++.+.+...+.++.++++++|+||+|||++ ++.+++.++. .+++
T Consensus 10 mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~~v~~~l~--------~~~~ 80 (153)
T d2i76a2 10 LTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIKTVANHLN--------LGDA 80 (153)
T ss_dssp HHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THHHHHTTTC--------CSSC
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhhHHHhhhc--------ccce
Confidence 899999999775555679999999999999987777788999999999999999987 8888886531 2458
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHHHHHHHHHHhcCCCeE
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI 160 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~ 160 (300)
+|||+|+..|....+ ... .. +++++.+|..+++..+..+...++++||+++++.++++|+.+|.+++
T Consensus 81 ivi~~s~~~~~~~l~---~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~ 147 (153)
T d2i76a2 81 VLVHCSGFLSSEIFK---KSG------RA----SIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYF 147 (153)
T ss_dssp CEEECCSSSCGGGGC---SSS------EE----EEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEE
T ss_pred eeeecccchhhhhhh---hhc------cc----cceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEE
Confidence 999999987753321 111 11 25677777666666666667788899999999999999999999999
Q ss_pred eeCC
Q 022237 161 YCGG 164 (300)
Q Consensus 161 ~~g~ 164 (300)
++++
T Consensus 148 ~i~~ 151 (153)
T d2i76a2 148 VIPS 151 (153)
T ss_dssp ECCG
T ss_pred EeCC
Confidence 9865
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.71 E-value=1.9e-17 Score=131.58 Aligned_cols=147 Identities=10% Similarity=0.155 Sum_probs=113.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-CCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||++||++|.++||+|++|||+++.++++.+.|.. ...+..++++++|+||+|+|.. ++++++.++.+.+ +++
T Consensus 11 mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl~~l~~~l-----~~~ 84 (165)
T d2f1ka2 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTLEKLIPHL-----SPT 84 (165)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHHHHHGGGS-----CTT
T ss_pred HHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhhhhhhhhc-----ccc
Confidence 89999999999999999999999999999888753 3445567889999999999886 8888887654443 455
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh----cCceEEEe---ccCHHHHHHHHHHH
Q 022237 80 QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE----AGTLTFMV---GGSEDAYQAAKPLF 152 (300)
Q Consensus 80 ~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~----~g~~~~~~---~g~~~~~~~~~~ll 152 (300)
++|+|++++.+.....+.+...+ +.+.|++.+|...++..+. .+...+++ +++++.++.++++|
T Consensus 85 ~iv~~~~s~~~~~~~~~~~~~~~---------~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~ 155 (165)
T d2f1ka2 85 AIVTDVASVKTAIAEPASQLWSG---------FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVL 155 (165)
T ss_dssp CEEEECCSCCHHHHHHHHHHSTT---------CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred cceeeccccchHHHHHHHHhhcc---------cccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 89999999998887776654432 1235666666666665543 24444444 56899999999999
Q ss_pred HhcCCCeEee
Q 022237 153 LSMGKNTIYC 162 (300)
Q Consensus 153 ~~lg~~~~~~ 162 (300)
+.+|.+++++
T Consensus 156 ~~lG~~v~~c 165 (165)
T d2f1ka2 156 EPLGVKIYLC 165 (165)
T ss_dssp GGGTCEEEEC
T ss_pred HHhCCEEEeC
Confidence 9999998753
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=1.5e-15 Score=118.68 Aligned_cols=129 Identities=18% Similarity=0.209 Sum_probs=102.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||++||++|.++||+|.+|||++... .++.++++|++++++|.. ++..++.+..+. .++++
T Consensus 21 mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~~-~~~~v~~~~~~~-----~~~~~ 81 (152)
T d2pv7a2 21 LGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVPIN-LTLETIERLKPY-----LTENM 81 (152)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSCGG-GHHHHHHHHGGG-----CCTTS
T ss_pred HHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccchh-hheeeeeccccc-----ccCCc
Confidence 89999999999999999999987643 345678999999999887 666676543333 34568
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEE-EeccCCChHhhhcCceEEEe-ccCHHHHHHHHHHHHhcCCC
Q 022237 81 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMV-GGSEDAYQAAKPLFLSMGKN 158 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~g~~~~~~~g~~~~~~-~g~~~~~~~~~~ll~~lg~~ 158 (300)
+|+|+||+++...+++.+... .+|+ .+|++|+......+...+++ +++++.++++.++|+.+|.+
T Consensus 82 iiiD~~Svk~~~~~~~~~~~~-------------~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~ 148 (152)
T d2pv7a2 82 LLADLTSVKREPLAKMLEVHT-------------GAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 148 (152)
T ss_dssp EEEECCSCCHHHHHHHHHHCS-------------SEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCE
T ss_pred eEEEecccCHHHHHHHHHHcc-------------CCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhCCE
Confidence 999999999999888876542 2444 67999987777777766665 66888999999999999998
Q ss_pred eEe
Q 022237 159 TIY 161 (300)
Q Consensus 159 ~~~ 161 (300)
++.
T Consensus 149 v~e 151 (152)
T d2pv7a2 149 IYQ 151 (152)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.51 E-value=5.3e-14 Score=111.78 Aligned_cols=148 Identities=14% Similarity=0.201 Sum_probs=108.4
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCCCCC--CCCHHH-HhhcCCEEEEecCChhhhhhhhcCCCCcccCCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPT--KETPFE-VAEASDVVITMLPSSSHVLDVYNGPNGLLQGGN 75 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~~--~~~~~e-~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~ 75 (300)
||++||++|.++|+ +|++||++++..+.+.+.+... ..+..+ ...++|+||+|+|.. ++.+++.++...+
T Consensus 12 mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl~~l~~~~---- 86 (171)
T d2g5ca2 12 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAKKLSYIL---- 86 (171)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhhhhhhccc----
Confidence 79999999999996 7899999999999999887632 334433 345899999999876 7777876544443
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh----cCceEEEe---ccCHHHHHHH
Q 022237 76 SVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE----AGTLTFMV---GGSEDAYQAA 148 (300)
Q Consensus 76 ~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~----~g~~~~~~---~g~~~~~~~~ 148 (300)
+++++|+|++++.....+.+.+.+..+ +.+.|.+.++...++..+. .|...+++ ..+++.++.+
T Consensus 87 -~~~~ii~d~~s~k~~~~~~~~~~~~~~--------~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v 157 (171)
T d2g5ca2 87 -SEDATVTDQGSVKGKLVYDLENILGKR--------FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLV 157 (171)
T ss_dssp -CTTCEEEECCSCCTHHHHHHHHHHGGG--------EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHH
T ss_pred -cccccccccccccHHHHHHHHHhhccc--------ccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHH
Confidence 345899999999999888887766431 1124444444444555443 35555665 3478899999
Q ss_pred HHHHHhcCCCeEee
Q 022237 149 KPLFLSMGKNTIYC 162 (300)
Q Consensus 149 ~~ll~~lg~~~~~~ 162 (300)
+++|+.+|.++.+|
T Consensus 158 ~~~~~~lG~~v~~M 171 (171)
T d2g5ca2 158 KRVWEDVGGVVEYM 171 (171)
T ss_dssp HHHHHHTTCEEEEC
T ss_pred HHHHHHcCCEEEeC
Confidence 99999999988764
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.49 E-value=1.3e-14 Score=120.58 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=105.3
Q ss_pred HHHhCCCeEEEEcCChhhH-HHHHh------------------------------------CCCCCCCCHHHHhhcCCEE
Q 022237 8 NLMKAGYKMAVHDVNCNVM-KMFSD------------------------------------MGVPTKETPFEVAEASDVV 50 (300)
Q Consensus 8 ~l~~~G~~V~~~dr~~~~~-~~~~~------------------------------------~g~~~~~~~~e~~~~adiV 50 (300)
+|++.|+.|++.|.+++++ +.+.+ .|+..++|+.|+++++|+|
T Consensus 66 ~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiI 145 (242)
T d2b0ja2 66 CFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIV 145 (242)
T ss_dssp GGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEE
T ss_pred hhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeE
Confidence 5788999999999997654 22211 0356678999999999999
Q ss_pred EEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhh
Q 022237 51 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 130 (300)
Q Consensus 51 ii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~ 130 (300)
|+|||++..+++++.++.+. .+++++|+|+||+++....++.+.+.+. +++|++.+-.++ +...
T Consensus 146 I~~vP~~~~v~~Vi~~I~~~-----l~~g~Iiid~STi~~~~~~~l~e~l~~k----------gi~vi~~hp~a~-pe~~ 209 (242)
T d2b0ja2 146 ITWLPKGNKQPDIIKKFADA-----IPEGAIVTHACTIPTTKFAKIFKDLGRE----------DLNITSYHPGCV-PEMK 209 (242)
T ss_dssp EECCTTCTTHHHHHHHHGGG-----SCTTCEEEECSSSCHHHHHHHHHHTTCT----------TSEEEECBCSSC-TTTC
T ss_pred EEeeecHHHHHHHHHHHHhh-----CCCCcEEEecCCCcHHHHHHHHHhcccC----------CCEEECCCccCc-Cccc
Confidence 99999987888898654433 3566899999999999999998887642 277776543333 3333
Q ss_pred cCceEEEeccCHHHHHHHHHHHHhcCCCeEee
Q 022237 131 AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 162 (300)
Q Consensus 131 ~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~ 162 (300)
.+.+.+..+++++.++.+.++|+.+|++++.+
T Consensus 210 g~~li~~~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 210 GQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp CCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 34445555679999999999999999988765
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.43 E-value=5.9e-13 Score=103.60 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=94.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP 79 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~ 79 (300)
||++|+++|.++||+|++|+|++++.+++.+. |...+.++.++++.+|+||+||+. ..+++++..+ .++
T Consensus 11 mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp-~~~~~vl~~l---------~~~ 80 (152)
T d2ahra2 11 MASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKP-QLFETVLKPL---------HFK 80 (152)
T ss_dssp HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCG-GGHHHHHTTS---------CCC
T ss_pred HHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecch-HhHHHHhhhc---------ccc
Confidence 89999999999999999999999999988654 888889999999999999999965 4888887542 123
Q ss_pred eEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEE-eccCCChHhhhcCceEEEecc--CHHHHHHHHHHHHhc
Q 022237 80 QLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSM 155 (300)
Q Consensus 80 ~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~l 155 (300)
++||+. +++.. .++.+.+.. +..++. .|. .+.....+...+..+. +++.++.++++|+.+
T Consensus 81 ~~iis~~agi~~---~~l~~~l~~-----------~~~ivr~mPN--~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~ 144 (152)
T d2ahra2 81 QPIISMAAGISL---QRLATFVGQ-----------DLPLLRIMPN--MNAQILQSSTALTGNALVSQELQARVRDLTDSF 144 (152)
T ss_dssp SCEEECCTTCCH---HHHHHHHCT-----------TSCEEEEECC--GGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred eeEecccccccH---HHHHhhhcc-----------cccchhhccc--hhhhcCccceEEEeCCCCCHHHHHHHHHHHHhC
Confidence 566743 33443 345555532 123332 232 2222333442333332 588999999999999
Q ss_pred CCCeEeeC
Q 022237 156 GKNTIYCG 163 (300)
Q Consensus 156 g~~~~~~g 163 (300)
|. ++++.
T Consensus 145 G~-~~~v~ 151 (152)
T d2ahra2 145 GS-TFDIS 151 (152)
T ss_dssp EE-EEECC
T ss_pred CC-EEEec
Confidence 95 45543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.37 E-value=2.8e-12 Score=104.48 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=109.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------------CCCCCCHHHHhhcCCEEEEecCChh--
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------------VPTKETPFEVAEASDVVITMLPSSS-- 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------------~~~~~~~~e~~~~adiVii~vp~~~-- 58 (300)
+|.++|..|+++||+|++||.|+++++.+.+.. ....++..++++++|++|+|||+|.
T Consensus 11 vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i~i~VpTP~~~ 90 (202)
T d1mv8a2 11 VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKK 90 (202)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEEECCCCCBCT
T ss_pred hHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEEEEecCccccc
Confidence 599999999999999999999999998886431 2456788899999999999999862
Q ss_pred -------hhhhhhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc
Q 022237 59 -------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 131 (300)
Q Consensus 59 -------~~~~v~~~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~ 131 (300)
.+..+...+...+.. ..++++||..||+.|.+++++...+.+... .......+++..+|.+-.+..+..
T Consensus 91 ~~~~d~~~~~~~~~~i~~~~~~--~~~~~liii~STv~pGtt~~~~~~~l~~~~--~~~~~~~~~~~~~PE~~~~G~a~~ 166 (202)
T d1mv8a2 91 NGDLDLGYIETVCREIGFAIRE--KSERHTVVVRSTVLPGTVNNVVIPLIEDCS--GKKAGVDFGVGTNPEFLRESTAIK 166 (202)
T ss_dssp TSSBCCHHHHHHHHHHHHHHTT--CCSCCEEEECSCCCTTHHHHTHHHHHHHHH--SCCBTTTBEEEECCCCCCTTSHHH
T ss_pred cccccchhhhhhhhhhhheeec--ccCCcceeeccccCCcchhhhhhhhhhccc--cccccccccchhhhhhhcccchhh
Confidence 123333322222222 234578999999999999887665432110 011112367888998765543322
Q ss_pred ---CceEEEecc-CHHHHHHHHHHHHhcCCCeEe
Q 022237 132 ---GTLTFMVGG-SEDAYQAAKPLFLSMGKNTIY 161 (300)
Q Consensus 132 ---g~~~~~~~g-~~~~~~~~~~ll~~lg~~~~~ 161 (300)
..-.+++|+ +++..+.++++|+.+...++.
T Consensus 167 d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 167 DYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp HHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred hhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence 111356666 788999999999999877664
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.32 E-value=1.1e-12 Score=102.07 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=91.6
Q ss_pred ChHHHHHHHHhCC-CeEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 1 MGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 1 mG~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
||++|+++|.++| ++|++|||++++++.+.+. |+....+.++ ++++|+||+||+ |..+++++.++. +.
T Consensus 11 MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~~~l~--------~~ 80 (152)
T d1yqga2 11 MAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAACKNIR--------TN 80 (152)
T ss_dssp HHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHHTTCC--------CT
T ss_pred HHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhHHHHh--------hc
Confidence 8999999999888 8999999999999998775 6666666554 678999999997 458888886542 12
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEecc--CHHHHHHHHHHHHhcC
Q 022237 79 PQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMG 156 (300)
Q Consensus 79 ~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~lg 156 (300)
++++|.. ....+...+.+.+... .+ +-..+...|.....|...+..+. +++.++.++++|+.+|
T Consensus 81 ~~~viS~--~ag~~~~~l~~~l~~~-----------~~-iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G 146 (152)
T d1yqga2 81 GALVLSV--AAGLSVGTLSRYLGGT-----------RR-IVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVG 146 (152)
T ss_dssp TCEEEEC--CTTCCHHHHHHHTTSC-----------CC-EEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTE
T ss_pred ccEEeec--ccCCCHHHHHHHhCcC-----------cc-eEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 3677743 3333344566655320 12 22234444555555553343333 5788899999999999
Q ss_pred CC
Q 022237 157 KN 158 (300)
Q Consensus 157 ~~ 158 (300)
..
T Consensus 147 ~~ 148 (152)
T d1yqga2 147 LT 148 (152)
T ss_dssp EE
T ss_pred CE
Confidence 53
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.21 E-value=1.2e-12 Score=105.50 Aligned_cols=148 Identities=10% Similarity=0.128 Sum_probs=104.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||+++|..|+++||+|++|+|+++.++.+.+.+ +....+++++++++|+||++||.. .+++++.+
T Consensus 18 wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs~-~~~~~~~~ 96 (189)
T d1n1ea2 18 FGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ-FLRGFFEK 96 (189)
T ss_dssp HHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcHH-HHHHHHHH
Confidence 799999999999999999999999999887542 345667899999999999999987 88888876
Q ss_pred CCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHHH
Q 022237 67 PNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 145 (300)
Q Consensus 67 ~~~~l~~~~~~~~~ivid~-st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~~ 145 (300)
...........++..++.+ .+..+.+.+.+.+.+.+.. .. ..+.++.+|.+..+......+..++++.+.+..
T Consensus 97 ~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~-~~-----~~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~~a 170 (189)
T d1n1ea2 97 SGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFL-PS-----PLLSVLAGPSFAIEVATGVFTCVSIASADINVA 170 (189)
T ss_dssp HCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTS-CG-----GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHH
T ss_pred HHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHh-cc-----cceEEEecCCcHHHHHcCCCcEEEEEeCCHHHH
Confidence 5432100000122445554 3555666666666665421 01 125678888887766665566566677788999
Q ss_pred HHHHHHHHhc
Q 022237 146 QAAKPLFLSM 155 (300)
Q Consensus 146 ~~~~~ll~~l 155 (300)
+.++++|+.-
T Consensus 171 ~~i~~lfst~ 180 (189)
T d1n1ea2 171 RRLQRIMSTG 180 (189)
T ss_dssp HHHHHHHSCT
T ss_pred HHHHHHhCCC
Confidence 9999999753
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.1e-11 Score=97.28 Aligned_cols=145 Identities=12% Similarity=0.238 Sum_probs=95.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh-----------CC------------------CCCCCCHHHHhhcCCEEE
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG------------------VPTKETPFEVAEASDVVI 51 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g------------------~~~~~~~~e~~~~adiVi 51 (300)
||+.+|..++.+||+|++||++++.++...+ .+ .....+..+++++||+|+
T Consensus 15 mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~~a~~~ad~Vi 94 (192)
T d1f0ya2 15 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVV 94 (192)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhHhhhcccceeh
Confidence 8999999999999999999999986553322 12 234567788899999999
Q ss_pred EecCChhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhh
Q 022237 52 TMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 129 (300)
Q Consensus 52 i~vp~~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~ 129 (300)
-|+|.+..++. ++.+++.+. +++.++. ++|+.+. .++++.+.+ +.++.+.||+.+|-.......
T Consensus 95 Eav~E~l~~K~~v~~~l~~~~-----~~~~ilasnTS~l~i---~~la~~~~~------p~r~ig~HffnP~~~~~lVEI 160 (192)
T d1f0ya2 95 EAIVENLKVKNELFKRLDKFA-----AEHTIFASNTSSLQI---TSIANATTR------QDRFAGLHFFNPVPVMKLVEV 160 (192)
T ss_dssp ECCCSCHHHHHHHHHHHTTTS-----CTTCEEEECCSSSCH---HHHHTTSSC------GGGEEEEEECSSTTTCCEEEE
T ss_pred hhcccchhHHHHHHHHHhhhc-----ccCceeeccCccccc---chhhhhccC------HhHEEeeccccccCcccEEEE
Confidence 99999977765 444444443 3334443 3333333 345444432 344445677765533332111
Q ss_pred hcCceEEEeccCHHHHHHHHHHHHhcCCCeEeeCC
Q 022237 130 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 164 (300)
Q Consensus 130 ~~g~~~~~~~g~~~~~~~~~~ll~~lg~~~~~~g~ 164 (300)
..|. ..+++.++.+.++++.+|+.++.+.+
T Consensus 161 v~g~-----~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 161 IKTP-----MTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp ECCT-----TCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cCCC-----CCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 1111 23789999999999999999988754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.02 E-value=1.1e-10 Score=93.15 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=95.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcC--ChhhHHHHHhCC-------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMG-------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr--~~~~~~~~~~~g-------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
||+++|..|+++||+|++|.| +++.++.+...+ ....+++.++++++|+||++||.. .+++++.
T Consensus 11 ~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avps~-~~~~~~~ 89 (180)
T d1txga2 11 MGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTD-GVLPVMS 89 (180)
T ss_dssp HHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCGG-GHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccchh-hhHHHHH
Confidence 799999999999999999988 455677776542 123567889999999999999986 8899988
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHH--HHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHH
Q 022237 66 GPNGLLQGGNSVRPQLLIDSSTIDPQTS--RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 143 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~st~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~ 143 (300)
++.+.+. ++.+++.+.+..+... ..+.+.+.+. .........++.+|-+..+......+..++++.+.+
T Consensus 90 ~l~~~l~-----~~~ii~~tkg~~~~~~~~~~~~~~~~~~----~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias~~~~ 160 (180)
T d1txga2 90 RILPYLK-----DQYIVLISKGLIDFDNSVLTVPEAVWRL----KHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSES 160 (180)
T ss_dssp HHTTTCC-----SCEEEECCCSEEEETTEEEEHHHHHHTT----STTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCHH
T ss_pred hhccccc-----cceecccccCccccccccccchHHHHhh----hcccccceeEEcCCccHHHHHcCCCcEEEEEcCCHH
Confidence 7655553 2345554444321111 1122222221 000001245778888877666655565667777888
Q ss_pred HHHHHHHHHHh
Q 022237 144 AYQAAKPLFLS 154 (300)
Q Consensus 144 ~~~~~~~ll~~ 154 (300)
..+.++++|+.
T Consensus 161 ~a~~i~~~f~~ 171 (180)
T d1txga2 161 SANKMKEIFET 171 (180)
T ss_dssp HHHHHHHHHCB
T ss_pred HHHHHHHHHCC
Confidence 88999999874
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.89 E-value=1.6e-09 Score=85.94 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=72.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---------------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITMLPSSSHVLDVYN 65 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g---------------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~ 65 (300)
||+++|..|+++||+|++|||++++.+.+.+.+ .....++.|+++++|+||+|+|.. ..+.++.
T Consensus 12 ~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~~~-~~~~~~~ 90 (184)
T d1bg6a2 12 GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAI-HHASIAA 90 (184)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSCGG-GHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEchh-HHHHHHH
Confidence 799999999999999999999999999887653 123567899999999999999887 7888887
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 66 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 66 ~~~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
++.+.+ .++++|+..++..... ..+.+.+.
T Consensus 91 ~i~~~l-----~~~~~iv~~~g~~~~~-~~~~~~~~ 120 (184)
T d1bg6a2 91 NIASYI-----SEGQLIILNPGATGGA-LEFRKILR 120 (184)
T ss_dssp HHGGGC-----CTTCEEEESSCCSSHH-HHHHHHHH
T ss_pred Hhhhcc-----CCCCEEEEeCCCCccH-HHHHHHHH
Confidence 665554 3447777766655443 33444444
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.88 E-value=1.3e-10 Score=93.08 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=87.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----------C-------------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------G-------------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----------g-------------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
||+.+|..++.+|++|++||++++.+++..+. + +....+ .+.+.++|+||.|+|.
T Consensus 15 mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~adlViEav~E 93 (186)
T d1wdka3 15 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLS-YGDFGNVDLVVEAVVE 93 (186)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESS-STTGGGCSEEEECCCS
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccc-cccccccceeeeeecc
Confidence 89999999999999999999999876544221 1 122222 2447899999999999
Q ss_pred hhhhhh-hhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCce
Q 022237 57 SSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 134 (300)
Q Consensus 57 ~~~~~~-v~~~~~~~l~~~~~~~~~ivi-d~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~ 134 (300)
+..++. ++.+++.+. +++.++. ++|+... .++++.+.+ +.++.+.||+.+|.......
T Consensus 94 ~l~~K~~lf~~l~~~~-----~~~~IiaSnTS~l~i---~~la~~~~~------p~r~~g~Hf~nP~~~~~lVE------ 153 (186)
T d1wdka3 94 NPKVKQAVLAEVENHV-----REDAILASNTSTISI---SLLAKALKR------PENFVGMHFFNPVHMMPLVE------ 153 (186)
T ss_dssp CHHHHHHHHHHHHTTS-----CTTCEEEECCSSSCH---HHHGGGCSC------GGGEEEEECCSSTTTCCEEE------
T ss_pred hHHHHHHHHHHHHhhc-----CCCeeEEeccccccH---HHHHHhccC------chheEeeccccCcccCCeEE------
Confidence 987765 444333333 3444544 3233332 345444432 22222344544332222111
Q ss_pred EEEec--cCHHHHHHHHHHHHhcCCCeEeeCC
Q 022237 135 TFMVG--GSEDAYQAAKPLFLSMGKNTIYCGG 164 (300)
Q Consensus 135 ~~~~~--g~~~~~~~~~~ll~~lg~~~~~~g~ 164 (300)
++.+ .+++.++.+..+++.+|+.++.+.+
T Consensus 154 -iv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 154 -VIRGEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp -EEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -ECCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 1222 3789999999999999999988754
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.84 E-value=1.8e-08 Score=71.35 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=75.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 245 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (300)
..|+.+|++.|.+.+..++.++|...+|++.|+|..++.+++....--........| .+||...++
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~~p--------------G~G~GG~Cl 67 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRP--------------GFAFGGSCL 67 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSC--------------CSCCCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccccCC--------------cccCCcccc
Confidence 468999999999999999999999999999999999999998755311100000111 236677899
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 022237 246 AKDLNLALASAKEVGVDCPLTSQAQDIY 273 (300)
Q Consensus 246 ~kd~~~~~~~a~~~g~~~~~~~~~~~~~ 273 (300)
.||+..+..++++.+++.++++++.++=
T Consensus 68 pKD~~al~~~a~~~~~~~~ll~~~~~~N 95 (98)
T d1mv8a1 68 PKDVRALTYRASQLDVEHPMLGSLMRSN 95 (98)
T ss_dssp HHHHHHHHHHHHHTTCCCTTGGGHHHHH
T ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 9999999999999999999998887653
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.59 E-value=5.6e-08 Score=77.90 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=83.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC------------------CCCCCCCHHHHhhcCCEEEEecCChhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------GVPTKETPFEVAEASDVVITMLPSSSHVLD 62 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~------------------g~~~~~~~~e~~~~adiVii~vp~~~~~~~ 62 (300)
+|.++|..|+ .||+|++||.++++++.++.. ......+......++|++++|||++..-..
T Consensus 11 vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~vpt~~~~~~ 89 (196)
T d1dlja2 11 VGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIATPTNYNSRI 89 (196)
T ss_dssp HHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEECCCCCEETTT
T ss_pred hHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccccCCccccccC
Confidence 4899998886 599999999999999888652 112334556677899999999998843111
Q ss_pred hhcCC-------CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhc---C
Q 022237 63 VYNGP-------NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA---G 132 (300)
Q Consensus 63 v~~~~-------~~~l~~~~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~---g 132 (300)
-.... +.+.. ..++.+++-.||+.|.+++++.+.... .++.-.|.+-.+..+.. -
T Consensus 90 ~~~~~~~v~~~~~~~~~---~~~~~~iii~Stv~pgt~~~~~~~~~~------------~~~~~~PE~i~~G~ai~d~~~ 154 (196)
T d1dlja2 90 NYFDTQHVETVIKEVLS---VNSHATLIIKSTIPIGFITEMRQKFQT------------DRIIFSPEFLRESKALYDNLY 154 (196)
T ss_dssp TEECCHHHHHHHHHHHH---HCSSCEEEECSCCCTTHHHHHHHHTTC------------SCEEECCCCCCTTSTTHHHHS
T ss_pred CCcceeEEeehhhhhhh---cccceeEEeeeecCceeeeeeeeccch------------hhhccchhhcchhhhHhhccC
Confidence 00000 00111 134568888999999999998776643 45677787655443321 1
Q ss_pred ceEEEeccCHHH
Q 022237 133 TLTFMVGGSEDA 144 (300)
Q Consensus 133 ~~~~~~~g~~~~ 144 (300)
.-.+++|++++.
T Consensus 155 p~riv~G~~~~~ 166 (196)
T d1dlja2 155 PSRIIVSCEEND 166 (196)
T ss_dssp CSCEEEECCTTS
T ss_pred CCEEEEeCCHhh
Confidence 124567775443
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.46 E-value=3.4e-06 Score=59.25 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhHH
Q 022237 167 NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA 246 (300)
Q Consensus 167 ~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (300)
.|+.+|++.|.+.+..+..++|...+|++.|+|..++.+.+......+ .+ +. +...+|...++.
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~------~~---~~-------~pg~g~GG~Clp 66 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIG------MH---YN-------NPSFGYGGYSLP 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTC------SS---SC-------CCCSSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccC------Cc---cc-------cCCCCcccccCc
Confidence 588999999999999999999999999999999999988877553110 00 00 112456778999
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 022237 247 KDLNLALASAKEVGVDCPLTSQAQDIYAK 275 (300)
Q Consensus 247 kd~~~~~~~a~~~g~~~~~~~~~~~~~~~ 275 (300)
||+..++ +.+.+++.++++++.+.=+.
T Consensus 67 KD~~al~--~~~~~~~~~ll~~~~~~N~~ 93 (98)
T d1dlja1 67 KDTKQLL--ANYNNIPQTLIEAIVSSNNV 93 (98)
T ss_dssp HHHHHHH--HHHTTSSCSHHHHHHHHHHH
T ss_pred ccHHHHH--HHhcCCCcHHHHHHHHHHHh
Confidence 9999984 56778999999998876544
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.23 E-value=6.9e-07 Score=70.56 Aligned_cols=168 Identities=12% Similarity=0.051 Sum_probs=85.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC-------CCCCCCHHHHhhcCCEEEEecCChhhhhhhhc-----CCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-------VPTKETPFEVAEASDVVITMLPSSSHVLDVYN-----GPN 68 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~-----~~~ 68 (300)
||++||+.|+++||+|.+|+|++++++.+.++. .....+........+....+++....+..... ...
T Consensus 12 iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (212)
T d1jaya_ 12 LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILREK 91 (212)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTTS
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccchHHHHhhhhhccc
Confidence 799999999999999999999999998886641 11223445555666777777755433221110 000
Q ss_pred CcccCC----CCCCCeEEEEcCCCCHHHHHHHHHHHhhhhhhhccCCCCCceEEEeccCCChHhhhcCceEEEeccCHHH
Q 022237 69 GLLQGG----NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 144 (300)
Q Consensus 69 ~~l~~~----~~~~~~ivid~st~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~g~~~~~~~g~~~~~~~g~~~~ 144 (300)
...... .... .... .+. ..........+... ... ..+..+.++....+... .......++.+.+.
T Consensus 92 ~~~~~~~~~~~~~~-~~~~-~~~--~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~a 160 (212)
T d1jaya_ 92 IVVSPLVPVSRGAK-GFTY-SSE--RSAAEIVAEVLESE----KVV--SALHTIPAARFANLDEK-FDWDVPVCGDDDES 160 (212)
T ss_dssp EEEECCCCEECCTT-CCEE-CCS--SCHHHHHHHHHTCS----CEE--ECCTTCCHHHHHCTTCC-CCEEEEEEESCHHH
T ss_pred cccccccccccccc-cccc-ccc--chhhhhhhhhhhhh----ccc--ccceeecHHHhcCcccc-cCccceEEeCCHHH
Confidence 000000 0000 0111 111 12223333333221 000 00111222322222211 22334455666666
Q ss_pred HHHHH-HHHHhcCCCeEeeCCccHHHHHHHHHHHHH
Q 022237 145 YQAAK-PLFLSMGKNTIYCGGAGNGAAAKICNNLTM 179 (300)
Q Consensus 145 ~~~~~-~ll~~lg~~~~~~g~~g~a~~~k~~~n~~~ 179 (300)
...+. .+.+..|.++++.|.+..+..+|...+++.
T Consensus 161 ~~~~~~~~~~~~g~~~~~~G~l~~a~~~e~~~~l~~ 196 (212)
T d1jaya_ 161 KKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLIL 196 (212)
T ss_dssp HHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHH
T ss_pred HHHHHHHHhhCCCeEEEEeChHHHHHHHHhHHHHHH
Confidence 55554 466667888899999898888886655443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=4.3e-07 Score=70.22 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=58.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC-------CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-------PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG 73 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~-------~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~ 73 (300)
||+.+|..|+++||+|++|+|++++.......+. ....+..+....+|+||+|++.. ++++++..+...+
T Consensus 11 iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~-~~~~~~~~l~~~~-- 87 (167)
T d1ks9a2 11 LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDAVKSLASTL-- 87 (167)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeeccc-chHHHHHhhcccc--
Confidence 7999999999999999999999887665443321 22334557778999999999886 7788776544443
Q ss_pred CCCCCCeEEEEcCC
Q 022237 74 GNSVRPQLLIDSST 87 (300)
Q Consensus 74 ~~~~~~~ivid~st 87 (300)
.++++|+.+.+
T Consensus 88 ---~~~~~Iv~~qN 98 (167)
T d1ks9a2 88 ---PVTTPILLIHN 98 (167)
T ss_dssp ---CTTSCEEEECS
T ss_pred ---CcccEEeeccC
Confidence 23356666554
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.93 E-value=7.3e-06 Score=64.31 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=70.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+++.+..-|.+|++|||++.. .......++++.+++||+|++++|...+.+.++.. ..+.. .+++.
T Consensus 53 IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~--~~l~~--mk~~a 122 (181)
T d1qp8a1 53 IGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKHTRGLVKY--QHLAL--MAEDA 122 (181)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCH--HHHTT--SCTTC
T ss_pred ccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhccccccccccccccc--ceeee--ccccc
Confidence 4888999999999999999998642 22344578999999999999999998887777753 34544 46778
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-..--....+.+.+.+
T Consensus 123 ilIN~~RG~ivd~~aL~~aL~~ 144 (181)
T d1qp8a1 123 VFVNVGRAEVLDRDGVLRILKE 144 (181)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred eEEeccccccccchhhhhhccc
Confidence 9999886555555566666654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.81 E-value=1.4e-05 Score=63.02 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=76.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+++.|..-|.+|..||+.+.........+.....++.+.++++|+|++++|.....+.++.. +.++. .+++.
T Consensus 55 IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~--~~l~~--mk~ga 130 (188)
T d2naca1 55 IGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND--ETLKL--FKRGA 130 (188)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHTT--SCTTE
T ss_pred cchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHH--HHHHh--CCCCC
Confidence 478899999888999999999766555555556677789999999999999999998887777763 34443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-..--.-..+.+.+.+
T Consensus 131 ~lIN~aRG~ivd~~aL~~aL~~ 152 (188)
T d2naca1 131 YIVNTARGKLCDRDAVARALES 152 (188)
T ss_dssp EEEECSCGGGBCHHHHHHHHHT
T ss_pred EEEecCchhhhhHHHHHHHHhC
Confidence 9999887666556666676664
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.79 E-value=1.5e-05 Score=63.00 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=75.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|.+||+...........+.....+++++++.||+|++++|...+.+.++.. ..++. .+++.
T Consensus 58 IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~--~~l~~--mk~~a 133 (191)
T d1gdha1 58 IGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK--ATIKS--LPQGA 133 (191)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTT--SCTTE
T ss_pred chHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecH--HHhhC--cCCcc
Confidence 488899999999999999998766554444445556678999999999999999998887777753 34544 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-...-.-..+.+.+.+
T Consensus 134 ~lIN~sRG~ivde~aL~~aL~~ 155 (191)
T d1gdha1 134 IVVNTARGDLVDNELVVAALEA 155 (191)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEecCCccchhhHHHHHHHHc
Confidence 9999887666666667777664
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.66 E-value=3e-05 Score=61.35 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=72.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|+.+|+.+..-|.+|.+||+....- .....+.....++++.++.||+|++++|.....+.++.. ..++. .+++.
T Consensus 60 IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~--~~l~~--mk~~a 134 (193)
T d1mx3a1 60 VGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND--FTVKQ--MRQGA 134 (193)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH--HHHTT--SCTTE
T ss_pred ccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeecccccchhhhhH--HHHhc--cCCCC
Confidence 48899999999999999999875532 222335666789999999999999999988777666643 23443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-...-.-..+.+.+.+
T Consensus 135 ~lIN~sRG~ivde~aL~~aL~~ 156 (193)
T d1mx3a1 135 FLVNTARGGLVDEKALAQALKE 156 (193)
T ss_dssp EEEECSCTTSBCHHHHHHHHHH
T ss_pred eEEecCCceEEcHHHHHHHHHc
Confidence 9999987666556666676664
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.61 E-value=3.4e-05 Score=59.58 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=62.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCC---------CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV---------PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~---------~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||..+|+.|.++||+|++||||.++++.+.+... .......+.+...|+++.++|..... .+... ..
T Consensus 13 ~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~-~~~~~---~~ 88 (182)
T d1e5qa1 13 VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA-TVIKS---AI 88 (182)
T ss_dssp THHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHH-HHHHH---HH
T ss_pred HHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhh-HHHHH---HH
Confidence 8999999999999999999999999999987521 11123456678899999999876433 23211 11
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 022237 72 QGGNSVRPQLLIDSSTIDPQTSRNISAAVS 101 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~~~~~~~~~~~ 101 (300)
..+..++|.+...+. ...+.+...
T Consensus 89 -----~~~~~~~~~~~~~~~-~~~l~~~~~ 112 (182)
T d1e5qa1 89 -----RQKKHVVTTSYVSPA-MMELDQAAK 112 (182)
T ss_dssp -----HHTCEEECSSCCCHH-HHHTHHHHH
T ss_pred -----hhccceeecccCcHH-HHHHHHHhc
Confidence 122567777766554 445555443
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=8.2e-05 Score=58.25 Aligned_cols=96 Identities=10% Similarity=0.165 Sum_probs=72.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+++.+..-|.+|++||++........ .+.. ..+.+|++++||+|++++|...+.+.++.. ..+.. .+++.
T Consensus 55 IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~--~~l~~--mk~~a 128 (184)
T d1ygya1 55 IGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-LGIE-LLSLDDLLARADFISVHLPKTPETAGLIDK--EALAK--TKPGV 128 (184)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCHHHHHH-HTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTT--SCTTE
T ss_pred hhHHHHHHhhhccceEEeecCCCChhHHhh-cCce-eccHHHHHhhCCEEEEcCCCCchhhhhhhH--HHHhh--hCCCc
Confidence 478899999888999999998866543332 2333 458899999999999999988888777753 34443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-..--.-..+.+.+.+
T Consensus 129 ~lIN~sRG~iVde~aL~~aL~~ 150 (184)
T d1ygya1 129 IIVNAARGGLVDEAALADAITG 150 (184)
T ss_dssp EEEECSCTTSBCHHHHHHHHHT
T ss_pred eEEEecchhhhhhHHHHHHHhc
Confidence 9999987666666677777764
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.57 E-value=7e-05 Score=53.27 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 245 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (300)
|.|+++||+...+..+..+++.|++..++++|+..+ +++.+..+....|...... ++ .+...+ -..+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~-l~~~l~~s~~~~~~~~~~~----~v-----~~~~~h---a~Rr 67 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRESAIS----RL-----KSSCIH---ARRR 67 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHHHHHH----HH-----HHHHHT---HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHcCCccHHHHHHH----Hh-----cCCcch---hhHH
Confidence 689999999999999999999999999999999865 4566655443223100000 00 011111 2357
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q 022237 246 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 283 (300)
Q Consensus 246 ~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~ 283 (300)
..+++.+.++.++. ++..+.+++.+++++..+.+.+.
T Consensus 68 ~~EM~Eia~tl~~~-l~P~m~~a~a~~~~~~~d~~~~~ 104 (112)
T d1i36a1 68 YEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSA 104 (112)
T ss_dssp HHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHhcCCCh
Confidence 78999999999885 88899999999999988766554
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.47 E-value=0.00011 Score=58.22 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=70.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+..-|.+|++||+....... ..+. ...++.+.++++|+|++++|.....+.++.. ..+.. .+++.
T Consensus 54 IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~--~~l~~--mk~~a 126 (197)
T d1j4aa1 54 IGQVFMQIMEGFGAKVITYDIFRNPELE--KKGY-YVDSLDDLYKQADVISLHVPDVPANVHMIND--ESIAK--MKQDV 126 (197)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHHHH--HTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSH--HHHHH--SCTTE
T ss_pred cchhHHHhHhhhcccccccCcccccccc--ccee-eeccccccccccccccccCCccccccccccH--HHHhh--hCCcc
Confidence 4889999999999999999987654332 2333 3468999999999999999988777766653 23433 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-...-.-..+.+.+.+
T Consensus 127 ~lIN~sRG~ivde~aL~~aL~~ 148 (197)
T d1j4aa1 127 VIVNVSRGPLVDTDAVIRGLDS 148 (197)
T ss_dssp EEEECSCGGGBCHHHHHHHHHH
T ss_pred EEEecCchhhhhhHHHHHHHhc
Confidence 9999887665555566666654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.41 E-value=9.7e-05 Score=54.45 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=47.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC-------CCCHHHH-hhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEV-AEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~e~-~~~adiVii~vp~~~~~ 60 (300)
+|..+++.|.+.|++|+++|.++++++++.+.+... ...+.++ +.++|.+|+++|++...
T Consensus 11 ~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~ 78 (134)
T d2hmva1 11 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA 78 (134)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred HHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence 489999999999999999999999999998775321 1223344 67999999999887443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.33 E-value=7.8e-05 Score=56.94 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=48.4
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CC--CCCCCHHHHhhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV--PTKETPFEVAEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~--~~~~~~~e~~~~adiVii~vp~~~ 58 (300)
||..+++.|.+.|. ++++|+|+.++++.+... |. ....+..+.+.++|+||.|++.+.
T Consensus 35 ~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 35 MGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 96 (159)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred HHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCC
Confidence 68899999999998 699999999999888665 43 334577888899999999997763
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.00014 Score=57.11 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=70.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+..-|.+|++||+...... .......+++|.++.+|+|++++|-....+.++.+ ..++. .+++.
T Consensus 55 IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~--~~l~~--mk~~a 126 (188)
T d1sc6a1 55 IGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA--KEISL--MKPGS 126 (188)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCH--HHHHH--SCTTE
T ss_pred chhhhhhhcccccceEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhccH--HHHhh--CCCCC
Confidence 478899999999999999998754221 12334568999999999999999988777777753 34543 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-..--....+.+.+.+
T Consensus 127 ~lIN~aRG~lvde~aL~~aL~~ 148 (188)
T d1sc6a1 127 LLINASRGTVVDIPALADALAS 148 (188)
T ss_dssp EEEECSCSSSBCHHHHHHHHHT
T ss_pred EEEEcCcHHhhhhHHHHHHHHc
Confidence 9999997776666677777764
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.21 E-value=0.0002 Score=56.72 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=69.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+..-|.+|++||+.+..... ......++++.++.||+|++++|.....+.++.. ..+.. .+++.
T Consensus 56 IG~~va~~l~~fg~~v~~~d~~~~~~~~----~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~--~~l~~--mk~~a 127 (199)
T d1dxya1 56 IGQVAIKLFKGFGAKVIAYDPYPMKGDH----PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINE--AAFNL--MKPGA 127 (199)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSCC----TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCH--HHHHH--SCTTE
T ss_pred ccccccccccccceeeeccCCccchhhh----cchhHHHHHHHHHhcccceeeecccccccccccH--HHhhc--cCCce
Confidence 4888999999999999999997653211 1123458999999999999999998787777653 34443 46779
Q ss_pred EEEEcCCCCHHHHHHHHHHHhh
Q 022237 81 LLIDSSTIDPQTSRNISAAVSN 102 (300)
Q Consensus 81 ivid~st~~p~~~~~~~~~~~~ 102 (300)
++|++|-...-....+.+.+.+
T Consensus 128 ~lIN~aRG~vvde~aL~~aL~~ 149 (199)
T d1dxya1 128 IVINTARPNLIDTQAMLSNLKS 149 (199)
T ss_dssp EEEECSCTTSBCHHHHHHHHHT
T ss_pred EEEecccHhhhhhHHHHHHHhc
Confidence 9999887666556666676654
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.14 E-value=0.00021 Score=59.82 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCccccccCCCCCCcccCCCCCCCCCCCcc
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA 241 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (300)
|+|+.+||++|.+.++.|++++|++.+.++ .|.+.+++.+++. .+...||+.+..... + ..++-+..+-
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~i---l----~~kd~~~~~~ 73 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI---L----KFQDADGKHL 73 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH---H----HCBCTTSSBS
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHH---H----hccCCCcCcc
Confidence 789999999999999999999999999987 5899888877755 455566665422110 0 0000000000
Q ss_pred hh------hHHHHHHHHHHHHHHcCCCchHHHHHH-HHHHH
Q 022237 242 SK------LMAKDLNLALASAKEVGVDCPLTSQAQ-DIYAK 275 (300)
Q Consensus 242 ~~------~~~kd~~~~~~~a~~~g~~~~~~~~~~-~~~~~ 275 (300)
++ .--..-....+.+-++|+|+|++..+. .++.+
T Consensus 74 ld~I~d~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S 114 (297)
T d2pgda1 74 LPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLS 114 (297)
T ss_dssp GGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhc
Confidence 00 000113677888999999999998765 34333
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00075 Score=51.15 Aligned_cols=81 Identities=11% Similarity=0.083 Sum_probs=61.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
+|..+|+.+...|-+|++||++|-++-+..-.|... .+.++++..+|++++++.....+ . .+.++. .+.+.
T Consensus 35 iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v-~~~~~a~~~adivvtaTGn~~vI----~--~eh~~~--MKdga 105 (163)
T d1li4a1 35 VGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV-TTMDEACQEGNIFVTTTGCIDII----L--GRHFEQ--MKDDA 105 (163)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSB----C--HHHHTT--CCTTE
T ss_pred ccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEe-eehhhhhhhccEEEecCCCccch----h--HHHHHh--ccCCe
Confidence 488999999999999999999998877766667665 47899999999999999775222 1 112332 35668
Q ss_pred EEEEcCCCCH
Q 022237 81 LLIDSSTIDP 90 (300)
Q Consensus 81 ivid~st~~p 90 (300)
++.+.+...-
T Consensus 106 IL~N~Ghfd~ 115 (163)
T d1li4a1 106 IVCNIGHFDV 115 (163)
T ss_dssp EEEECSSSTT
T ss_pred EEEEeccccc
Confidence 8888765443
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.74 E-value=0.0015 Score=49.21 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=61.9
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|..+|+++...|-+|++++++|-++-+..-.|... .+.+|+++.+|++|+++..... +. .+.+.. .+.+.|
T Consensus 35 GrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~v----I~--~~h~~~--MKdgaI 105 (163)
T d1v8ba1 35 GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDV----IK--LEHLLK--MKNNAV 105 (163)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSS----BC--HHHHTT--CCTTCE
T ss_pred chhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCcc----cc--HHHHHH--hhCCeE
Confidence 88999999999999999999998877776678766 6889999999999999988732 21 112322 356678
Q ss_pred EEEcCCCCHH
Q 022237 82 LIDSSTIDPQ 91 (300)
Q Consensus 82 vid~st~~p~ 91 (300)
+.+.+....+
T Consensus 106 l~N~GHfd~E 115 (163)
T d1v8ba1 106 VGNIGHFDDE 115 (163)
T ss_dssp EEECSSTTTS
T ss_pred EEeccccchh
Confidence 8887765433
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.48 E-value=0.0017 Score=55.06 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=48.5
Q ss_pred CeEEEEcCChhhHHHHHh----CCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 14 YKMAVHDVNCNVMKMFSD----MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~----~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.+|.+|+|++++++.+.+ .+.....++.+++.+||+|++|+|.. ..++. ....++|..|+-.++..
T Consensus 151 ~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~---~P~~~-------~~~l~~G~hv~~iGs~~ 220 (320)
T d1omoa_ 151 GEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSR---KPVVK-------AEWVEEGTHINAIGADG 220 (320)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCS---SCCBC-------GGGCCTTCEEEECSCCS
T ss_pred hhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCc---ccccc-------hhhcCCCCeEeecCCcc
Confidence 379999999999877654 36666678889999999999999866 23332 11245667777666655
Q ss_pred HH
Q 022237 90 PQ 91 (300)
Q Consensus 90 p~ 91 (300)
|.
T Consensus 221 p~ 222 (320)
T d1omoa_ 221 PG 222 (320)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.37 E-value=0.0029 Score=46.08 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=44.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCC----CCCHH---HH-hhcCCEEEEecCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT----KETPF---EV-AEASDVVITMLPSSS 58 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~----~~~~~---e~-~~~adiVii~vp~~~ 58 (300)
+|..+++.|.+.|++|++.|+++++++++.+. +... ..++. ++ ++++|.++.++++++
T Consensus 11 ~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~ 77 (132)
T d1lssa_ 11 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 77 (132)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence 58999999999999999999999999988764 4322 12222 22 568898888888873
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.31 E-value=0.0029 Score=46.40 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhH-------HHHH----hCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVM-------KMFS----DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~-------~~~~----~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
..++..|.+.|.+|.+||..-+.. ..+. ..+.....++.++++++|+||++++.+ ..+++...
T Consensus 36 ~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~ivi~t~h~-~f~~l~~~----- 109 (136)
T d1mv8a3 36 VELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDE-LFVDLVNK----- 109 (136)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECSCCG-GGHHHHHS-----
T ss_pred HHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEEEEEeCCH-HHHHHHHH-----
Confidence 357889999999999999632211 1111 113456789999999999999999988 55555432
Q ss_pred cCCCCCCCeEEEEcCCCCHH
Q 022237 72 QGGNSVRPQLLIDSSTIDPQ 91 (300)
Q Consensus 72 ~~~~~~~~~ivid~st~~p~ 91 (300)
..++++|+|+-+..+.
T Consensus 110 ----~~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 110 ----TPSGKKLVDLVGFMPH 125 (136)
T ss_dssp ----CCTTCEEEESSSCCSS
T ss_pred ----hcCCCEEEECCCCCCh
Confidence 1234799998887543
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.16 E-value=0.0053 Score=51.20 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH---hcC-CCccccccCCCCCCcccCCCCCCCCCCCcc
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN---SSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFA 241 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~---~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (300)
|+|+.+||++|.+.++.|++++|++.+.+..|.+.+++.+++. .+. ..||+.+..... +. ..+-++.+-
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~i---l~----~~d~~g~~l 73 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAA---AR----AKDKDGSYL 73 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHH---HH----CBCTTSSBG
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHH---Hh----hcCCCCchh
Confidence 7899999999999999999999999999999999987766654 333 467765422111 00 001001111
Q ss_pred hhh------HHHHHHHHHHHHHHcCCCchHHHHHH
Q 022237 242 SKL------MAKDLNLALASAKEVGVDCPLTSQAQ 270 (300)
Q Consensus 242 ~~~------~~kd~~~~~~~a~~~g~~~~~~~~~~ 270 (300)
++. ....-....+.+-++|+|+|.+.++.
T Consensus 74 ~d~I~d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av 108 (300)
T d1pgja1 74 TEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAV 108 (300)
T ss_dssp GGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHhcccccCCchHHHHHHHHHHcCCCccHHHHHH
Confidence 110 11123667788889999999998665
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.13 E-value=0.003 Score=47.89 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=55.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCC---CC----CCCCHHHHhhcCCEEEEecCChhh-hhhhhcCCCCcccC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---VP----TKETPFEVAEASDVVITMLPSSSH-VLDVYNGPNGLLQG 73 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g---~~----~~~~~~e~~~~adiVii~vp~~~~-~~~v~~~~~~~l~~ 73 (300)
|..=++...+.|-+|+++|+++++++++.... .. ....+++.++++|+||.++-.+-. ..-++. ++.++.
T Consensus 44 G~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt--~~mv~~ 121 (168)
T d1pjca1 44 GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVP--ASLVEQ 121 (168)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBC--HHHHTT
T ss_pred HHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCeeec--HHHHhh
Confidence 34445566677999999999999998886652 11 112357788999999999854422 112222 224443
Q ss_pred CCCCCCeEEEEcCCCC
Q 022237 74 GNSVRPQLLIDSSTID 89 (300)
Q Consensus 74 ~~~~~~~ivid~st~~ 89 (300)
.++|.+|||.+.-.
T Consensus 122 --Mk~GSVIVDvaidq 135 (168)
T d1pjca1 122 --MRTGSVIVDVAVDQ 135 (168)
T ss_dssp --SCTTCEEEETTCTT
T ss_pred --cCCCcEEEEeecCC
Confidence 36779999988633
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.02 E-value=0.0098 Score=45.59 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCC-----------------------------CHHHHhhcCCEEEEe
Q 022237 3 FRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-----------------------------TPFEVAEASDVVITM 53 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~-----------------------------~~~e~~~~adiVii~ 53 (300)
..=++.....|-+|+++|+++++.+++.+.+..... .+.+.++++|+||.+
T Consensus 42 ~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~t 121 (183)
T d1l7da1 42 LQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITT 121 (183)
T ss_dssp HHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheee
Confidence 334455556799999999999999999887543221 123457899999998
Q ss_pred cCChhhhhh-hhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 54 LPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 54 vp~~~~~~~-v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
+-.+-.-.. ++. +++++. .++|.+|||.+.
T Consensus 122 alipG~~aP~lit--~~mv~~--Mk~GSVIVDvai 152 (183)
T d1l7da1 122 ALIPGKPAPVLIT--EEMVTK--MKPGSVIIDLAV 152 (183)
T ss_dssp CCCTTSCCCCCSC--HHHHTT--SCTTCEEEETTG
T ss_pred eecCCcccceeeh--HHHHHh--cCCCcEEEEEee
Confidence 854422111 221 224443 367799999885
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.0048 Score=41.69 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCeEEEEcCCh-hhHHHHHhCCCCCCC-CHHHHhhcCCEEEEec
Q 022237 3 FRMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTKE-TPFEVAEASDVVITML 54 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~-~~~e~~~~adiVii~v 54 (300)
++||+-|.++|++|.++|+++ +..++|.+.|+.... ...+-+.++|+||..-
T Consensus 15 s~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 15 SAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred HHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence 368999999999999999986 456778888876532 2233356778777653
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0017 Score=51.09 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=43.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC-------CCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------TKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------~~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|.++||+|++..|++++.......++. ...+..++++++|+||.++..
T Consensus 15 iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 15 TGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 48999999999999999999999987665544432 122445678899999988854
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.023 Score=42.62 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=61.3
Q ss_pred HHHHHhC-CCeEE-EEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEE
Q 022237 6 ASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLL 82 (300)
Q Consensus 6 a~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~iv 82 (300)
...+.+. ++++. +||++++++..+.+. +....++.++..++.|+|++|+|+....+-+.. .+.. +.+++
T Consensus 18 ~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~----al~~----gk~V~ 89 (164)
T d1tlta1 18 LPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVST----LLNA----GVHVC 89 (164)
T ss_dssp HHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH----HHHT----TCEEE
T ss_pred HHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccccccc----cccc----cceee
Confidence 3445443 55654 789999998887654 777788899999999999999999865544432 2321 22566
Q ss_pred EEc-CCCCHHHHHHHHHHHhh
Q 022237 83 IDS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 83 id~-st~~p~~~~~~~~~~~~ 102 (300)
++- -+..+.+.+++.+...+
T Consensus 90 ~EKPla~~~~e~~~l~~~a~~ 110 (164)
T d1tlta1 90 VDKPLAENLRDAERLVELAAR 110 (164)
T ss_dssp EESSSCSSHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHH
Confidence 664 24567888888777654
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.81 E-value=0.0092 Score=45.23 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=55.8
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh-hHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhc-CCCCcccCCCCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-GPNGLLQGGNSVRP 79 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~-~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~-~~~~~l~~~~~~~~ 79 (300)
|.+=|.+|..+|++|++--|... ..++..+.|... .+.+|+++.+|+|++.+|+. .-.+++. .+.+.+ ++|
T Consensus 28 G~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~-~q~~vy~~~I~p~l-----k~g 100 (182)
T d1np3a2 28 GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDE-FQGRLYKEEIEPNL-----KKG 100 (182)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHH-HHHHHHHHHTGGGC-----CTT
T ss_pred hHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchH-HHHHHHHHhhhhhc-----CCC
Confidence 67889999999999998877644 456677778765 58999999999999999987 4456664 344444 344
Q ss_pred eEEE
Q 022237 80 QLLI 83 (300)
Q Consensus 80 ~ivi 83 (300)
+.+.
T Consensus 101 ~~L~ 104 (182)
T d1np3a2 101 ATLA 104 (182)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 5555
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.76 E-value=0.0003 Score=53.61 Aligned_cols=121 Identities=18% Similarity=0.130 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC----CCccccccCCCCCCcccCCCCCCCCCCCcc
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFA 241 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (300)
|-...+++..|+..+.+..++.|+..+++..|-+.++++..-..+. +.|..++++..+..+..+............
T Consensus 21 Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~ 100 (160)
T d1n1ea1 21 GVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 100 (160)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCS
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccc
Confidence 4445556678999999999999999999999988887765433221 122222222111111111000000000112
Q ss_pred hhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 022237 242 SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 242 ~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
+....+-+..+.++++++++++|+.+.+++++ +++.+...+++.|
T Consensus 101 ~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il-------~~~~~p~~~i~~L 145 (160)
T d1n1ea1 101 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIV-------YKKKNPRDALADL 145 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH-------HSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH-------hCcCCHHHHHHHH
Confidence 34566778899999999999999999999987 4556665555554
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=95.68 E-value=0.0042 Score=52.82 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=47.1
Q ss_pred eEEEEcCChhhHHHHHhC-----CC--CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCC
Q 022237 15 KMAVHDVNCNVMKMFSDM-----GV--PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 87 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~-----g~--~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st 87 (300)
+|.+|||++++.+++.+. |. ..+.++++++++||+|++|++++ ....++.. +. .++|..|.-.++
T Consensus 155 ~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~-s~~Pv~~~--~~-----l~pG~hI~aiGs 226 (340)
T d1x7da_ 155 EIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-AYATIITP--DM-----LEPGMHLNAVGG 226 (340)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-SEEEEECG--GG-----CCTTCEEEECSC
T ss_pred eeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccC-CCCcccch--hh-----cCCCCEEeeccc
Confidence 799999999998877542 43 45789999999999999999765 33344431 12 345566665555
Q ss_pred CCH
Q 022237 88 IDP 90 (300)
Q Consensus 88 ~~p 90 (300)
-.|
T Consensus 227 ~~p 229 (340)
T d1x7da_ 227 DCP 229 (340)
T ss_dssp CBT
T ss_pred chh
Confidence 444
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.48 E-value=0.0094 Score=40.77 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCeEEEEcCCh-hhHHHHHhCCCCCC-CCHHHHhhcCCEEEEec
Q 022237 3 FRMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTK-ETPFEVAEASDVVITML 54 (300)
Q Consensus 3 ~~la~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~-~~~~e~~~~adiVii~v 54 (300)
++||+.|.+.||+|+++|+.. ...+.+.+.|+... ....+-+.+.|+||..-
T Consensus 22 s~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 22 SGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp HHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred HHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence 578999999999999999873 45567777776532 22234457778777654
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.40 E-value=0.0038 Score=46.93 Aligned_cols=121 Identities=12% Similarity=-0.004 Sum_probs=73.0
Q ss_pred cHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC--CCccccccCCCCCCcccCCCCCC---C
Q 022237 166 GNGAAAKIC-----NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVPASR---N 235 (300)
Q Consensus 166 g~a~~~k~~-----~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~---~ 235 (300)
|....+++. .|+..+.+..++.|+..+++..|.++++++.....+. .++..++++..+..+.++..... +
T Consensus 20 Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sRN~~~G~~l~~G~~~~e~~~~ 99 (155)
T d1txga1 20 AWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEE 99 (155)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCCccHHHHHHhhhhhHHHHHHH
Confidence 444455555 5999999999999999999999999988765433221 11111233222111111000000 0
Q ss_pred C-CCCcchhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 022237 236 Y-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 293 (300)
Q Consensus 236 ~-~~~~~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 293 (300)
. .....+.+....++.+.+++++.++++|+.+.+++++.. +.|...+++.+
T Consensus 100 ~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~-------~~~~~~~i~~L 151 (155)
T d1txga1 100 LERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYE-------GLKVEEVLFEL 151 (155)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhC-------cCCHHHHHHHH
Confidence 0 001113346666788999999999999999999998853 44555555544
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.033 Score=41.88 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=28.7
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~ 88 (300)
.++.+.++++|+||.++..+..+. .+. .++|.++||.+..
T Consensus 72 ~~l~~~~~~ADivI~a~G~p~~i~------~~~-----vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 72 KNLRHHVENADLLIVAVGKPGFIP------GDW-----IKEGAIVIDVGIN 111 (166)
T ss_dssp SCHHHHHHHCSEEEECSCCTTCBC------TTT-----SCTTCEEEECCCE
T ss_pred chhHHHHhhhhHhhhhccCccccc------ccc-----cCCCcEEEecCce
Confidence 467788899999999998873322 112 3566899998763
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.31 E-value=0.0063 Score=47.22 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=28.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|..+|+.|++.|.+|++.+|++++.+.+.+
T Consensus 35 IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 35 VGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 5899999999999999999999999877754
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.025 Score=42.78 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=52.7
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----CC-CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GV-PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNS 76 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g~-~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~ 76 (300)
+++++..|.+.|.+|++++|++++++.+.+. +. ............+|+||-|+|.... .+...-..+. .
T Consensus 30 arai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~-~~~~~~~~~~-----~ 103 (170)
T d1nyta1 30 SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDIPAIPSSL-----I 103 (170)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCCCCCCGGG-----C
T ss_pred HHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc-cCCCCCcHHH-----h
Confidence 5678889999999999999999999887654 11 1111111123578999999988732 2221111111 2
Q ss_pred CCCeEEEEcCCCCHH
Q 022237 77 VRPQLLIDSSTIDPQ 91 (300)
Q Consensus 77 ~~~~ivid~st~~p~ 91 (300)
.++.+++|..-.+..
T Consensus 104 ~~~~~v~D~vY~P~~ 118 (170)
T d1nyta1 104 HPGIYCYDMFYQKGK 118 (170)
T ss_dssp CTTCEEEESCCCSSC
T ss_pred ccCcEEEEeecCCCC
Confidence 345788997654433
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.021 Score=45.95 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=40.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||.++|+.|++.|++|.+.+|++++++++.++.- ....+.+=+.+.++++.++.+
T Consensus 19 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 19 IGRGTVQALHATGARVVAVSRTQADLDSLVRECP-----------GIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 5899999999999999999999999888765421 122233334566677777654
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.055 Score=40.81 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=29.6
Q ss_pred CCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEEEcCCCC
Q 022237 38 ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 89 (300)
Q Consensus 38 ~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivid~st~~ 89 (300)
.++.+.++++|+|+.+++.+.-++. +. .++|.+|||.+...
T Consensus 74 ~~l~~~~~~aDivi~a~G~~~~i~~------~~-----vk~g~iviDvgi~~ 114 (170)
T d1a4ia1 74 AHLDEEVNKGDILVVATGQPEMVKG------EW-----IKPGAIVIDCGINY 114 (170)
T ss_dssp SSHHHHHTTCSEEEECCCCTTCBCG------GG-----SCTTCEEEECCCBC
T ss_pred ccHHHHHhhccchhhcccccccccc------cc-----ccCCCeEeccCccc
Confidence 4567788999999999988833321 12 34568999988754
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.85 E-value=0.015 Score=41.13 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=54.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|..+.+.|.+.||+|+..|.+.+.+ .|.....++.|.=...|++++++|.. .+.+++.+. .+.. .+ .+
T Consensus 17 g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~-~~~~~l~~~---~~~g--~k-~v 84 (116)
T d1y81a1 17 GNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPK-VGLQVAKEA---VEAG--FK-KL 84 (116)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHH-HHHHHHHHH---HHTT--CC-EE
T ss_pred HHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCHH-HHHHHHHHH---HhcC--Cc-eE
Confidence 5678899999999998888765433 36777888888877889999999887 666676542 2211 12 56
Q ss_pred EEEcCCCCH
Q 022237 82 LIDSSTIDP 90 (300)
Q Consensus 82 vid~st~~p 90 (300)
++..++...
T Consensus 85 ~~~~g~~~~ 93 (116)
T d1y81a1 85 WFQPGAESE 93 (116)
T ss_dssp EECTTSCCH
T ss_pred EeccchhhH
Confidence 666554433
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.51 E-value=0.03 Score=44.96 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=39.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||.++|+.|++.|++|.+.+|++++++++.++.. +...+.+=+.+.+++++++.+
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~ 71 (242)
T d1cyda_ 17 IGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP-----------GIEPVCVDLGDWDATEKALGG 71 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 5899999999999999999999999888765421 122222334556667776654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.1 Score=39.02 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=45.7
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCC-----CCCHHHHh--------hcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPT-----KETPFEVA--------EASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-----~~~~~e~~--------~~adiVii~vp~~~~~~~v~ 64 (300)
||...++.+...|. +|++.|+++++++.+.+.|+.. ..++.+.. ...|+||-|++.+..++..+
T Consensus 38 iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~ 115 (171)
T d1pl8a2 38 IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGI 115 (171)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCCchhHHHHH
Confidence 46667777777898 7999999999999998888642 22333332 25799999998875555444
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=94.23 E-value=0.026 Score=44.22 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=53.4
Q ss_pred hHHHHHHHHhCC------CeEEEE-cCChhhHHHHHhCCCCC----CCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 2 GFRMASNLMKAG------YKMAVH-DVNCNVMKMFSDMGVPT----KETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 2 G~~la~~l~~~G------~~V~~~-dr~~~~~~~~~~~g~~~----~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
|.+-|.+|..+| ..|++- .......++..+.|... ..+..|+++.+|+|++.+||. .-.+++.+ +
T Consensus 56 G~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe-~Q~~vy~~---I 131 (226)
T d1qmga2 56 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDS-AQADNYEK---V 131 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHH-HHHHHHHH---H
T ss_pred HHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchH-HHHHHHHH---H
Confidence 678899999955 557665 44445667777778752 347889999999999999997 44567753 3
Q ss_pred ccCCCCCCCeEEEE
Q 022237 71 LQGGNSVRPQLLID 84 (300)
Q Consensus 71 l~~~~~~~~~ivid 84 (300)
.+. .++|+++.-
T Consensus 132 ~p~--Lk~G~~L~F 143 (226)
T d1qmga2 132 FSH--MKPNSILGL 143 (226)
T ss_dssp HHH--SCTTCEEEE
T ss_pred HHh--cCCCceeee
Confidence 333 345566664
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.08 E-value=0.018 Score=42.50 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=38.3
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC----C--CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM----G--VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~----g--~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..|+.+|. +|.++|+++++++.. ... + .....+. +.+++||+|+++...+
T Consensus 16 VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag~~ 83 (146)
T d1ez4a1 16 VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAGAP 83 (146)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCCC-
T ss_pred HHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEecccc
Confidence 48899999999884 899999999875422 111 1 1123344 4568999999988554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.03 E-value=0.018 Score=42.61 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=40.3
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC------CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM------GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~~------g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..|+.+|. ++.++|+++++++. +... .........+.+++||+|+++...+
T Consensus 17 vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~~ 85 (148)
T d1ldna1 17 VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (148)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecccc
Confidence 48899999998886 79999999987432 2211 2223334457789999999987554
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.02 E-value=0.1 Score=39.49 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=63.4
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhC-C----CCCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcc
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDM-G----VPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLL 71 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g----~~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l 71 (300)
||...++.|.+. +++|. ++|+++++++.+.+. + .+..++.++.++ +.|+|++|+|+....+-... .+
T Consensus 12 ~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~~~~~----~l 87 (184)
T d1ydwa1 12 IARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIK----AA 87 (184)
T ss_dssp THHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHH----HH
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcchhhh----hh
Confidence 577777788775 56766 679999998877553 3 235678898874 57999999999866554432 23
Q ss_pred cCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 72 QGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 72 ~~~~~~~~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
+. +-.++++-- +..+.+.+++.+...+
T Consensus 88 ~~----g~~v~~EKP~~~~~~e~~~l~~~~~~ 115 (184)
T d1ydwa1 88 EK----GKHILLEKPVAMNVTEFDKIVDACEA 115 (184)
T ss_dssp TT----TCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred hc----cceeecccccccCHHHHHHHHHHHHh
Confidence 21 224556432 3567778888777664
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.89 E-value=0.027 Score=41.18 Aligned_cols=78 Identities=9% Similarity=0.168 Sum_probs=55.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
|..+.+.|.+.||+|+..|.+.+.+ .|.....++.|.-...|++++++|.. .+.+++++. .+. ....+
T Consensus 35 g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~~-~~~~~~~e~---~~~---g~k~v 102 (139)
T d2d59a1 35 ANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKPK-LTMEYVEQA---IKK---GAKVV 102 (139)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCHH-HHHHHHHHH---HHH---TCSEE
T ss_pred hHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeCHH-HHHHHHHHH---HHh---CCCEE
Confidence 5678889999999988888664322 36677888888877899999999876 777777653 221 11257
Q ss_pred EEEcCCCCHH
Q 022237 82 LIDSSTIDPQ 91 (300)
Q Consensus 82 vid~st~~p~ 91 (300)
|+..++..++
T Consensus 103 ~~~~G~~~ee 112 (139)
T d2d59a1 103 WFQYNTYNRE 112 (139)
T ss_dssp EECTTCCCHH
T ss_pred EEeccccCHH
Confidence 7766665544
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.019 Score=46.31 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=46.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|+.|+++|.+|++++|++++++++.++ ..+.-.++-.+..=+.+.+.++.+++....... +-.
T Consensus 19 IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g-----~id 86 (244)
T d1yb1a_ 19 IGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG-----DVS 86 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC-----CCS
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC-----CCc
Confidence 69999999999999999999999998877643 111111222333334555566665543221111 125
Q ss_pred EEEEcCCCC
Q 022237 81 LLIDSSTID 89 (300)
Q Consensus 81 ivid~st~~ 89 (300)
++|+..+..
T Consensus 87 ilinnag~~ 95 (244)
T d1yb1a_ 87 ILVNNAGVV 95 (244)
T ss_dssp EEEECCCCC
T ss_pred eeEeecccc
Confidence 677666543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=93.58 E-value=0.022 Score=46.11 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|.+++|++++++++.+
T Consensus 14 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 44 (257)
T d2rhca1 14 IGLEIARRLGKEGLRVFVCARGEEGLRTTLK 44 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6999999999999999999999998877654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.50 E-value=0.17 Score=37.58 Aligned_cols=64 Identities=9% Similarity=0.059 Sum_probs=41.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCC-------CCHHHH---h-----hcCCEEEEecCChhhhhhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-------ETPFEV---A-----EASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~~~e~---~-----~~adiVii~vp~~~~~~~v~ 64 (300)
||...++.+...|.+|+++|+++++.+.+.+.|+... .+..+. + ...|+||-|+..+..+...+
T Consensus 38 vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~ 116 (170)
T d1e3ja2 38 IGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGI 116 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHH
T ss_pred cchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCChHHHHHHH
Confidence 4667777777789999999999999998888775321 111111 1 23677777776654444443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.50 E-value=0.02 Score=46.34 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++++++.+
T Consensus 13 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 43 (255)
T d1gega_ 13 IGKAIALRLVKDGFAVAIADYNDATAKAVAS 43 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998876653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.024 Score=45.85 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=29.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
||.++|+.|+++|++|.+.||++++++++.++
T Consensus 18 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~ 49 (250)
T d1ydea1 18 IGAGIVRAFVNSGARVVICDKDESGGRALEQE 49 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 68999999999999999999999998888764
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.42 E-value=0.05 Score=42.32 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=44.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhh-cCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~-~adiVii~vp~ 56 (300)
+|..+|+.|.+.|.+|+++|.+++++......|.... ++++++. .|||++-|-..
T Consensus 38 VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~~ 93 (201)
T d1c1da1 38 VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMG 93 (201)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCS
T ss_pred HHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeeccccc
Confidence 4889999999999999999999999999888887654 4555554 89988876543
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.41 E-value=0.31 Score=39.95 Aligned_cols=113 Identities=11% Similarity=0.113 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcC-CCccccccCCCCCCcccCCCCCCC--C
Q 022237 166 GNGAAAKICNNLTMAVSMLGVSEALTLGQSL------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--Y 236 (300)
Q Consensus 166 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 236 (300)
.....++.+.|++.+..+...++++.+.+++ ++|..++.++++.|+ ..|++++..... +.......+ +
T Consensus 138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a---~~~~~~l~nl~~ 214 (297)
T d2pgda1 138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDA---FDRNPGLQNLLL 214 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHH---HHHCTTCSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHH---HHhCCCccchhh
Confidence 5677899999999999999999999999754 789999999999887 566665422110 000000000 0
Q ss_pred CCCc--chhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q 022237 237 GGGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 281 (300)
Q Consensus 237 ~~~~--~~~~~~kd~~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~ 281 (300)
.+.| .+....+.++.+...+-+.|+|+|.+.+....|+.....-.
T Consensus 215 ~~~~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~~~l 261 (297)
T d2pgda1 215 DDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAML 261 (297)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSC
T ss_pred cHHHHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccCCc
Confidence 1111 23445556788999999999999999999988876554433
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.35 E-value=0.068 Score=39.16 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=40.9
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHHhCC---------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMG---------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~g---------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|.++|..|..+|. ++.++|.++.+...+.-.. .....+..+++++||+|+++...
T Consensus 12 VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~ 78 (144)
T d1mlda1 12 IGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (144)
T ss_dssp THHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence 58999999999886 6999999887654432221 12234567888999999998754
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.33 E-value=0.037 Score=44.36 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=29.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
||.++|+.|++.|++|++.+|++++++++.+.
T Consensus 17 IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~ 48 (242)
T d1ulsa_ 17 IGRATLELFAKEGARLVACDIEEGPLREAAEA 48 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999999998887654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.28 E-value=0.033 Score=44.73 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=46.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCe
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQ 80 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ 80 (300)
||.++|+.|+++|++|.+.+|++++++++.++- -..+..+-.=+.++.++++++.+....... =.
T Consensus 18 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~-----id 82 (244)
T d1nffa_ 18 MGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----------ADAARYVHLDVTQPAQWKAAVDTAVTAFGG-----LH 82 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------GGGEEEEECCTTCHHHHHHHHHHHHHHHSC-----CC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------hCcceEEEeecCCHHHHHHHHHHHHHHhCC-----Ce
Confidence 589999999999999999999999888776531 011222222245666666666543222211 14
Q ss_pred EEEEcCCC
Q 022237 81 LLIDSSTI 88 (300)
Q Consensus 81 ivid~st~ 88 (300)
++|+..+.
T Consensus 83 ilinnAG~ 90 (244)
T d1nffa_ 83 VLVNNAGI 90 (244)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 77766554
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.20 E-value=0.046 Score=41.12 Aligned_cols=55 Identities=11% Similarity=0.260 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC-CCCCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
++++++..|.+.|. +|++++||+++.+.+.+. +.....+.. ..++|+||-|+|-.
T Consensus 28 aarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiG 84 (167)
T d1npya1 28 MAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 84 (167)
T ss_dssp THHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred HHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccC
Confidence 47889999999997 799999999999888654 322222111 25789999999853
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.049 Score=43.65 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=28.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++++++.+
T Consensus 16 IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~ 46 (243)
T d1q7ba_ 16 IGRAIAETLAARGAKVIGTATSENGAQAISD 46 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999998887764
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=92.75 E-value=0.064 Score=39.76 Aligned_cols=55 Identities=15% Similarity=-0.048 Sum_probs=39.6
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--------C----CCCCCCHHHHhhcCCEEEEecCC
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--------G----VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~e~~~~adiVii~vp~ 56 (300)
|.++|..|+.+++ ++.++|+++++++..... + .....+.+++++++|+|+++...
T Consensus 19 G~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag~ 86 (154)
T d1pzga1 19 GGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL 86 (154)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEeccc
Confidence 7888888888886 899999998765433211 1 12234567889999999998854
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.11 Score=39.44 Aligned_cols=56 Identities=5% Similarity=0.056 Sum_probs=39.5
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--------CC-------CCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--------GV-------PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~--------g~-------~~~~~~~e~~~~adiVii~vp~~ 57 (300)
|++++..|.+.|. +++++||++++.+++... .. ....+..+....+|+||-|+|..
T Consensus 30 arai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~Tp~G 101 (182)
T d1vi2a1 30 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVG 101 (182)
T ss_dssp HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTT
T ss_pred HHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceeccccCCc
Confidence 6788889999887 699999998876654321 11 11122345678999999999865
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.035 Score=44.90 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++++++.+
T Consensus 23 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 53 (255)
T d1fmca_ 23 IGKEIAITFATAGASVVVSDINADAANHVVD 53 (255)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=92.52 E-value=0.053 Score=43.83 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|.+.+|+++++++..+
T Consensus 16 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 46 (258)
T d1iy8a_ 16 LGRATAVRLAAEGAKLSLVDVSSEGLEASKA 46 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6899999999999999999999998876643
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.39 E-value=0.062 Score=39.14 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=38.2
Q ss_pred hHHHHHHHHhCCC--eEEEEcCChhhHHHHHhC---------CCCCCCCHHHHhhcCCEEEEecCC
Q 022237 2 GFRMASNLMKAGY--KMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 2 G~~la~~l~~~G~--~V~~~dr~~~~~~~~~~~---------g~~~~~~~~e~~~~adiVii~vp~ 56 (300)
|.++|..++.++. ++.++|++++++...... ......+..+.++++|+|+++...
T Consensus 12 G~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140)
T d1a5za1 12 GSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140)
T ss_dssp HHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred HHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc
Confidence 7888888888775 799999998876432111 122233345678999999999744
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.38 E-value=0.04 Score=44.60 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|++.+|++++++++.+
T Consensus 18 IG~aia~~la~~G~~V~i~~r~~~~l~~~~~ 48 (258)
T d1ae1a_ 18 IGYAIVEELAGLGARVYTCSRNEKELDECLE 48 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6899999999999999999999988877654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.29 E-value=0.028 Score=45.39 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=27.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|.+++|++++++++.+
T Consensus 22 IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~ 52 (251)
T d2c07a1 22 IGREIAKMLAKSVSHVICISRTQKSCDSVVD 52 (251)
T ss_dssp HHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=92.26 E-value=0.055 Score=39.78 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=38.9
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHH----HhC----CC--CCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM----GV--PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~----~~~----g~--~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..|+..|. ++.++|+++++++.. .+. +. ....+..+.+++||+|+++...+
T Consensus 12 VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~ 80 (146)
T d1hyha1 12 VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI 80 (146)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence 37889999998875 899999999875322 211 11 12223345679999999987654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.08 E-value=0.044 Score=44.18 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++.++..+
T Consensus 17 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 47 (251)
T d1vl8a_ 17 LGFGIAQGLAEAGCSVVVASRNLEEASEAAQ 47 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6899999999999999999999988776543
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=91.80 E-value=0.31 Score=40.00 Aligned_cols=138 Identities=9% Similarity=0.067 Sum_probs=84.7
Q ss_pred ccCHHHHHHHHHHHHhcCCCeE--eeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhc
Q 022237 139 GGSEDAYQAAKPLFLSMGKNTI--YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSS 210 (300)
Q Consensus 139 ~g~~~~~~~~~~ll~~lg~~~~--~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~ 210 (300)
|+..+........+......+. ..........+|.+.|++.+..+...++++.+.++ .++|..++.++++.|
T Consensus 114 S~~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~G 193 (300)
T d1pgja1 114 TMYKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAG 193 (300)
T ss_dssp HHTHHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSS
T ss_pred hCChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCC
Confidence 4555555556666654443332 22345677889999999999999999999999975 469999999999988
Q ss_pred C-CCccccccCCCCCCcccCCCCCCCCCCCcc--hhhHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 022237 211 S-ARCWSSDSYNPVPGVMEGVPASRNYGGGFA--SKLMAKDL-NLALASAKEVGVDCPLTSQAQDIYAKLCEN 279 (300)
Q Consensus 211 ~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~kd~-~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~ 279 (300)
+ ..|++++..... ........+....|. +....+.. +.+...+.+.|+|+|.+.+++..|......
T Consensus 194 CIIRS~LL~~i~~a---~~~~~~l~~l~~~f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~~ 263 (300)
T d1pgja1 194 CILQGYLLKPMTEA---FEKNPNISNLMCAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTP 263 (300)
T ss_dssp STTCBTTHHHHHHH---HHHCTTCSCTTGGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCS
T ss_pred ceeeHHHHHHHHHH---hhcCCccchhhHHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 7 456554321110 000000001111121 11112222 344455678899999999999887766443
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.45 E-value=0.16 Score=38.27 Aligned_cols=78 Identities=22% Similarity=0.185 Sum_probs=46.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH-HH-----HHhCCC-----CCCCCHHHHhhcCCEEEEecCChhhhhhhhcCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM-KM-----FSDMGV-----PTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 69 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~-~~-----~~~~g~-----~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~~~~ 69 (300)
.|.+||.-|.+.|..|+.++.+.... .. ....+. ...+.+.+....+|+||.++|.+ ... +. .+
T Consensus 41 VG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~p-~~~--i~--~d 115 (171)
T d1edza1 41 VGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSE-NYK--FP--TE 115 (171)
T ss_dssp THHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCT-TCC--BC--TT
T ss_pred cHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEccCCC-ccc--cC--hh
Confidence 37888888888888888777552211 00 000000 00112567778999999999988 211 11 11
Q ss_pred cccCCCCCCCeEEEEcCCC
Q 022237 70 LLQGGNSVRPQLLIDSSTI 88 (300)
Q Consensus 70 ~l~~~~~~~~~ivid~st~ 88 (300)
. .++|.++||.+..
T Consensus 116 ~-----ik~GavvIDvGi~ 129 (171)
T d1edza1 116 Y-----IKEGAVCINFACT 129 (171)
T ss_dssp T-----SCTTEEEEECSSS
T ss_pred h-----cccCceEeecccc
Confidence 2 3567999998864
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=91.27 E-value=0.071 Score=38.85 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHHHH----hC------CCCC-CCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKMFS----DM------GVPT-KETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~~~----~~------g~~~-~~~~~e~~~~adiVii~vp 55 (300)
+|.+++..|+..|. ++.++|+++++..... .. .... ..+..++++++|+|+++..
T Consensus 11 VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag 78 (142)
T d1guza1 11 VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG 78 (142)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred HHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEe
Confidence 47899999999884 8999999987654321 11 1222 2344677899999999974
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=91.23 E-value=0.5 Score=35.38 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=58.4
Q ss_pred HHHHHhCC--CeEE-EEcCChhhHHHHHhC-CC-CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCC
Q 022237 6 ASNLMKAG--YKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVR 78 (300)
Q Consensus 6 a~~l~~~G--~~V~-~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~ 78 (300)
...+.+.+ ++|. ++|+++++++.+.+. +. ...++.+|.++ +.|+|++|+|+....+-+.. .++. +
T Consensus 20 ~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~~~~----al~~----g 91 (181)
T d1zh8a1 20 LPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEK----ALRK----G 91 (181)
T ss_dssp HHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHH----HHHT----T
T ss_pred HHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccccccc----cccc----c
Confidence 44555533 4555 789999999887654 44 35689999886 57999999998865443332 2321 2
Q ss_pred CeEEEEcC-CCCHHHHHHHHHHHhh
Q 022237 79 PQLLIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 79 ~~ivid~s-t~~p~~~~~~~~~~~~ 102 (300)
.+++++-- +....+.+++.+...+
T Consensus 92 k~V~~EKPl~~~~~e~~~l~~~~~~ 116 (181)
T d1zh8a1 92 VHVICEKPISTDVETGKKVVELSEK 116 (181)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred hhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 25666542 4567777888777664
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.063 Score=36.00 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCChh
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCN 24 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~ 24 (300)
|.+.|+.|.+.|++|++||.++.
T Consensus 17 G~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 17 GLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp HHHHHHHHHHTTCCCEEEESSSS
T ss_pred HHHHHHHHHHCCCEEEEeeCCcC
Confidence 78899999999999999998643
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.87 E-value=0.071 Score=42.68 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=29.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
||.++|+.|+++|++|++.+|++++++++.+.
T Consensus 18 IG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~ 49 (245)
T d2ag5a1 18 IGQAAALAFAREGAKVIATDINESKLQELEKY 49 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence 58999999999999999999999998887664
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=90.77 E-value=0.038 Score=41.84 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=37.3
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhC----C-CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~----g-~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+.+++..|.+.+-+|++++|++++++.+.+. + .............+|+||-|+|..
T Consensus 30 arai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 30 TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred HHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 5677778888777999999999999887653 1 111111112245788888888866
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=90.76 E-value=0.088 Score=42.48 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=28.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+++|++++++++.+
T Consensus 20 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d2ae2a_ 20 IGYGIVEELASLGASVYTCSRNQKELNDCLT 50 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6999999999999999999999998877654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=90.71 E-value=0.16 Score=37.73 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=58.1
Q ss_pred HHHHHhC-CCeEEEEcCChhhHHHHHhC-CC-CCCCCHHHHhh-cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeE
Q 022237 6 ASNLMKA-GYKMAVHDVNCNVMKMFSDM-GV-PTKETPFEVAE-ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 81 (300)
Q Consensus 6 a~~l~~~-G~~V~~~dr~~~~~~~~~~~-g~-~~~~~~~e~~~-~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~i 81 (300)
...+.+. +.++.++|+++++++.+.+. +. ...++.++.++ +.|+|++|+|.....+-+.. .++. +..+
T Consensus 18 ~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~----al~~----gk~V 89 (167)
T d1xeaa1 18 LPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF----FLHL----GIPT 89 (167)
T ss_dssp HHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH----HHHT----TCCE
T ss_pred HHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccccc----cccc----cccc
Confidence 3444444 45788999999999888664 44 34567777765 67999999999866554432 2321 2246
Q ss_pred EEEcC-CCCHHHHHHHHHHHhh
Q 022237 82 LIDSS-TIDPQTSRNISAAVSN 102 (300)
Q Consensus 82 vid~s-t~~p~~~~~~~~~~~~ 102 (300)
+++-- +......+++.+...+
T Consensus 90 ~~EKP~~~~~~e~~~l~~~a~~ 111 (167)
T d1xeaa1 90 FVDKPLAASAQECENLYELAEK 111 (167)
T ss_dssp EEESCSCSSHHHHHHHHHHHHH
T ss_pred ccCCCCcCCHHHHHHHHHHHHH
Confidence 66531 4566777788777664
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=90.70 E-value=0.11 Score=38.64 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=39.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHH----HHHhC----CC--CCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM----GV--PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~----~~~~~----g~--~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|+++|..|...|+ ++.++|++++++. ++... +. .......+.+++||+|+++...+
T Consensus 31 VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~~ 99 (160)
T d1i0za1 31 VGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVR 99 (160)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCCc
Confidence 48999999999997 8999999987763 23221 11 11223356678999999987443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.092 Score=42.30 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|+++|++|++++|++++++++.+
T Consensus 22 IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~ 52 (257)
T d1xg5a_ 22 IGAAVARALVQQGLKVVGCARTVGNIEELAA 52 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=90.59 E-value=0.073 Score=38.56 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=46.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
|..+.+.|.+.||++..++.++.. ..+ .|.....++.+.-...|++++++|.. .+.+++.+
T Consensus 29 g~~v~~~L~~~g~~~~~v~~~~~~-~~i--~g~~~~~~l~~i~~~iD~v~v~~p~~-~v~~~v~~ 89 (136)
T d1iuka_ 29 AHYVPRYLREQGYRVLPVNPRFQG-EEL--FGEEAVASLLDLKEPVDILDVFRPPS-ALMDHLPE 89 (136)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGTT-SEE--TTEECBSSGGGCCSCCSEEEECSCHH-HHTTTHHH
T ss_pred hHHHHHHHhcCCCCceEEEecccc-cee--eceecccchhhccCCCceEEEeccHH-HHHHHHHH
Confidence 567888999999999999877532 112 35667778888777889999999865 77777754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.50 E-value=0.24 Score=37.30 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=26.3
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCC
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV 34 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~ 34 (300)
|...++.+...|. +|++.|+++++.+.+.+.|+
T Consensus 41 G~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 41 GLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp HHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred chhheecccccccccccccccccccccccccccc
Confidence 5556666666787 79999999999998888775
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.41 E-value=0.079 Score=40.09 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=38.5
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-----CC-----CCCCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GV-----PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~-----~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+++++..|.+.| +|++++|++++++.+.+. .. ....+.......+|+||-|+|..
T Consensus 30 arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g 94 (177)
T d1nvta1 30 ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 94 (177)
T ss_dssp HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred HHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccc
Confidence 456777777766 899999999998877542 11 01123344456899999999876
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=90.24 E-value=0.11 Score=41.80 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=28.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
||.++|+.|+++|++|++.+|++++++++.++
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~ 48 (254)
T d1hdca_ 17 LGAEAARQAVAAGARVVLADVLDEEGAATARE 48 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 68999999999999999999999988877654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.17 E-value=0.11 Score=41.98 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|++.||++++++++.+
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (260)
T d1zema1 17 IGLATALRLAEEGTAIALLDMNREALEKAEA 47 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=90.05 E-value=0.12 Score=37.75 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=39.1
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHhC----C-CC-CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G-VP-TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~~----g-~~-~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..|+.+|. ++.++|+++++++. +... + .. ...+..+.+++||+|+++...+
T Consensus 12 VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~ 80 (143)
T d1llda1 12 VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR 80 (143)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence 48899999998886 89999999987642 3322 1 11 1123345678999999988543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.04 E-value=0.069 Score=43.11 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=27.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|++.+|++++.++..+
T Consensus 21 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 51 (260)
T d1h5qa_ 21 IGLAFTRAVAAAGANVAVIYRSAADAVEVTE 51 (260)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSCTTHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988766543
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=89.97 E-value=0.11 Score=42.25 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=28.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++++++.+
T Consensus 17 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 17 LGRALVDRFVAEGAKVAVLDKSAERLAELET 47 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6999999999999999999999998877654
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.90 E-value=0.18 Score=37.06 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=38.3
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhC--------CC--CC-CCCHHHHhhcCCEEEEecCCh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--------GV--PT-KETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~--------g~--~~-~~~~~e~~~~adiVii~vp~~ 57 (300)
|+++|..|...+. ++.++|+++++++..... +. .. ..+..+.++++|+|+++...+
T Consensus 15 G~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 15 GGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred HHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 7889988887775 799999998775433111 11 11 234456789999999998543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.89 E-value=0.11 Score=42.06 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=27.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|++.+|++++++++.+
T Consensus 17 IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 17 IGRTTAILFAQEGANVTITGRSSERLEETRQ 47 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6899999999999999999999998877654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=89.85 E-value=0.056 Score=43.20 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=27.3
Q ss_pred ChHHHHHHHHhCCCe-------EEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYK-------MAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~-------V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++ |.+++|++++++++.+
T Consensus 13 IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~ 50 (240)
T d2bd0a1 13 IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL 50 (240)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence 599999999999987 8899999998887754
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=89.80 E-value=0.18 Score=39.54 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCeEE-EEcCChhhHHHHHhC-CC-----CCCCCHHHHhh--cCCEEEEecCChhhhhhhhcCCCCcccCCCCCCCeEEE
Q 022237 13 GYKMA-VHDVNCNVMKMFSDM-GV-----PTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLI 83 (300)
Q Consensus 13 G~~V~-~~dr~~~~~~~~~~~-g~-----~~~~~~~e~~~--~adiVii~vp~~~~~~~v~~~~~~~l~~~~~~~~~ivi 83 (300)
+.+|. ++|+++++++.+.+. |+ ....|.++.++ +.|+|++|+|+....+-+.. .+.. +..+++
T Consensus 58 ~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~~~~~~----al~~----gk~v~~ 129 (221)
T d1h6da1 58 HSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIR----AFKA----GKHVMC 129 (221)
T ss_dssp SEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHH----HHHT----TCEEEE
T ss_pred CceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhhhhHHHH----hhhc----chhhhc
Confidence 45655 789999999887654 43 23577888875 58999999999866554443 2221 225666
Q ss_pred Ec-CCCCHHHHHHHHHHHhh
Q 022237 84 DS-STIDPQTSRNISAAVSN 102 (300)
Q Consensus 84 d~-st~~p~~~~~~~~~~~~ 102 (300)
+- -+..+.+..++.+..++
T Consensus 130 EKPla~~~~e~~~l~~~a~~ 149 (221)
T d1h6da1 130 EKPMATSVADCQRMIDAAKA 149 (221)
T ss_dssp CSSCCSSHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHh
Confidence 53 24567778888777654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.78 E-value=0.22 Score=36.33 Aligned_cols=60 Identities=5% Similarity=-0.011 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH----HHHHhCCCCC----CCCHH---H-HhhcCCEEEEecCChhhh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM----KMFSDMGVPT----KETPF---E-VAEASDVVITMLPSSSHV 60 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~----~~~~~~g~~~----~~~~~---e-~~~~adiVii~vp~~~~~ 60 (300)
+|..+++.|.+.|++|++.+.++++. +.+...|... ..++. + -+++||.||++++++..-
T Consensus 14 ~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~n 85 (153)
T d1id1a_ 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADN 85 (153)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHHH
Confidence 37889999999999999999998754 3333345421 12222 1 246899999999987543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.60 E-value=0.12 Score=41.59 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=27.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++++++.+
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (264)
T d1spxa_ 17 IGRATAVLFAREGAKVTITGRHAERLEETRQ 47 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.55 E-value=0.13 Score=41.30 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=28.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|.+.+|++++++++.+
T Consensus 18 IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 18 VGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6899999999999999999999998887764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=89.49 E-value=0.18 Score=40.58 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=22.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN 24 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~ 24 (300)
||.++|+.|++.|++|++.+|+++
T Consensus 19 IG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 19 IAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHH
Confidence 588999999999999999999864
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.46 E-value=0.13 Score=41.18 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=28.1
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++++++.+
T Consensus 18 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 18 IGLAIATKFVEEGAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6999999999999999999999998877754
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.35 E-value=0.13 Score=41.34 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|.+++|+++++++..+
T Consensus 20 IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 20 IGHAIVEEFAGFGAVIHTCARNEYELNECLS 50 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.34 E-value=0.13 Score=41.51 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|++.+|++++++++.+
T Consensus 26 IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 26 IGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6999999999999999999999999887754
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.32 E-value=0.13 Score=41.50 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=28.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
||.++|+.|+++|++|++.||++++++++.++
T Consensus 18 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~ 49 (268)
T d2bgka1 18 IGETTAKLFVRYGAKVVIADIADDHGQKVCNN 49 (268)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999999988877653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=89.29 E-value=0.11 Score=37.85 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=33.9
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHH----HHHhCC-----CCCCCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDMG-----VPTKETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~----~~~~~g-----~~~~~~~~e~~~~adiVii~vp 55 (300)
+|.++|..+..+|. ++.++|++++++. ++.... ........+.+++||+|+++..
T Consensus 12 VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag 77 (142)
T d1y6ja1 12 VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG 77 (142)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecc
Confidence 38889999998886 8999999987642 222210 1112223456789999999864
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.28 E-value=0.11 Score=41.69 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=28.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
||.++|+.|++.|++|.+.+|++++++++.++
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (256)
T d1k2wa_ 17 IGRAFAEAYVREGARVAIADINLEAARATAAE 48 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 69999999999999999999999988877653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.11 E-value=0.14 Score=41.54 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=27.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++++++.+
T Consensus 16 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 16 IGRSAAVIFAKEGAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988876644
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.03 E-value=0.12 Score=41.02 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=27.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|++.+|+.+++++..+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 17 LGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 5899999999999999999999988776654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.82 E-value=0.22 Score=38.38 Aligned_cols=56 Identities=7% Similarity=0.040 Sum_probs=38.9
Q ss_pred ChHHHHHHHHhCCCeEE--EEcCChhhHHHHHhCC------CCCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGYKMA--VHDVNCNVMKMFSDMG------VPTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~--~~dr~~~~~~~~~~~g------~~~~~~~~e~~~~adiVii~vp~ 56 (300)
+|+.+++.|+++||+|. ...|++++...+...- .....+..++++++|.|+.+...
T Consensus 15 iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~ 78 (252)
T d2q46a1 15 TGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA 78 (252)
T ss_dssp THHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence 69999999999998754 4578888776654321 11122345677899999988743
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.69 E-value=0.33 Score=36.32 Aligned_cols=63 Identities=11% Similarity=-0.041 Sum_probs=40.4
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCCC-----CCHHHHhh------cCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVAE------ASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~~~e~~~------~adiVii~vp~~~~~~~v~ 64 (300)
|...++.+...|. +|++.|+++++.+.+.+.|+..+ .+..+.+. ..|+||-|++.+..+++.+
T Consensus 40 Gl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~ 114 (174)
T d1jqba2 40 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAV 114 (174)
T ss_dssp HHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHH
T ss_pred hhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHH
Confidence 5555666666786 79999999999988888876422 12222221 2677777776664444444
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.62 E-value=0.15 Score=40.71 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.2
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
||.++|+.|++.|++|.+.+|+++..+..
T Consensus 22 IG~aiA~~la~~Ga~V~i~~~~~~~~~~~ 50 (256)
T d1ulua_ 22 LGFAIAAKLKEAGAEVALSYQAERLRPEA 50 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHH
Confidence 58999999999999999999986654443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.31 E-value=0.17 Score=41.30 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|++.+|+.++.++..+
T Consensus 37 IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~ 67 (294)
T d1w6ua_ 37 LGKGMTTLLSSLGAQCVIASRKMDVLKATAE 67 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=87.96 E-value=0.2 Score=39.75 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=28.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 32 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~ 32 (300)
+|.++|+.|+++|++|++.+|+.+++++..+.
T Consensus 17 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (241)
T d2a4ka1 17 IGRAALDLFAREGASLVAVDREERLLAEAVAA 48 (241)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999999988777654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.72 E-value=0.61 Score=34.18 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=28.6
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~ 35 (300)
+|...++.+...|.+|++.|+++++.+.+.+.|+.
T Consensus 39 vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~ 73 (166)
T d1llua2 39 LGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS 73 (166)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred cHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence 36666676777899999999999999998888764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.56 E-value=0.18 Score=39.82 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
||.++|+.|++.|++|.+.+|+++.+++.
T Consensus 16 IG~aia~~l~~~Ga~V~~~~r~~~~l~~~ 44 (234)
T d1o5ia_ 16 IGRAVADVLSQEGAEVTICARNEELLKRS 44 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHhc
Confidence 69999999999999999999998876554
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.39 E-value=0.21 Score=41.04 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=27.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|++.+|+++++++..+
T Consensus 24 IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~ 54 (297)
T d1yxma1 24 IGKAIVKELLELGSNVVIASRKLERLKSAAD 54 (297)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999988776543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.34 E-value=0.14 Score=41.44 Aligned_cols=59 Identities=3% Similarity=-0.030 Sum_probs=38.4
Q ss_pred ChHHHHHHHHhC-CCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 1 MGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
||.++|+.|++. |+.|++++|++++.+++.++ +.+.-.++.++.+=+.+.+++++++.+
T Consensus 15 IG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dvs~~~sv~~~~~~ 74 (275)
T d1wmaa1 15 IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-------LQAEGLSPRFHQLDIDDLQSIRALRDF 74 (275)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEEecCCHHHHHHHHHH
Confidence 589999999985 89999999999988766542 011111233344445566666665544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.30 E-value=0.39 Score=35.47 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=41.4
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCCC-----CCHHHHh------hcCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVA------EASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~~~e~~------~~adiVii~vp~~~~~~~v~ 64 (300)
|...++.+...|. +|+++++++++.+.+.+.|+... .++.+.. ...|+||-|+..+..++..+
T Consensus 41 G~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~ 115 (170)
T d1jvba2 41 GTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYP 115 (170)
T ss_dssp HHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGG
T ss_pred eeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccchHHHhhh
Confidence 4555556666774 89999999999999888775321 2232222 23788888887765555443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.29 E-value=0.22 Score=39.81 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++.|++|.+.+|++++.++..+
T Consensus 15 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 45 (254)
T d2gdza1 15 IGRAFAEALLLKGAKVALVDWNLEAGVQCKA 45 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999998877654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.06 E-value=0.22 Score=36.87 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=39.1
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHH----HHHhC----CC--CCCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM----GV--PTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~----~~~~~----g~--~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..|...|+ ++.++|++++++. ++... +. ....+..+.++++|+|+++...+
T Consensus 30 VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag~~ 98 (159)
T d2ldxa1 30 VGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGAR 98 (159)
T ss_dssp HHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecccc
Confidence 48899999999886 7999999987653 33332 11 11122345568999999987543
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.01 E-value=0.19 Score=40.09 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=27.9
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~ 31 (300)
+|.++|+.|++.|++|.+.+|+.++.+++.+
T Consensus 12 iG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 12 GGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp THHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 6999999999999999999999888877654
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.17 E-value=0.09 Score=37.68 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred hHHHHHHHHhCC-CeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhhhcC
Q 022237 2 GFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 66 (300)
Q Consensus 2 G~~la~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v~~~ 66 (300)
|..+.++|.+.| ++|+..|.+.+.+ .|.....|+.|.=...|++++++|.. .+.+++.+
T Consensus 24 g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~~-~~~~~~~~ 83 (129)
T d2csua1 24 GYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKR-FVKDTLIQ 83 (129)
T ss_dssp HHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecChH-HhHHHHHH
Confidence 566788887765 6888888775433 36677788888777899999999876 77777754
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.02 E-value=0.3 Score=35.39 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=38.3
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhhHHH----HHh----CCC----CCCCCHHHHhhcCCEEEEecCC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD----MGV----PTKETPFEVAEASDVVITMLPS 56 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~~~~----~~~----~g~----~~~~~~~e~~~~adiVii~vp~ 56 (300)
.|.++|..|+.+|. ++.++|+++++++. +.. ... ....+ .+.++++|+|+++...
T Consensus 11 VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~ 79 (142)
T d1ojua1 11 VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (142)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred HHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence 38899999998885 79999999987532 221 111 11233 4678999999998854
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.79 E-value=1 Score=32.77 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCC
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 35 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~ 35 (300)
+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus 39 iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~ 73 (168)
T d1rjwa2 39 LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD 73 (168)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred chhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc
Confidence 57777777778899999999999999988887753
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.64 E-value=0.25 Score=39.23 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=25.2
Q ss_pred ChHHHHHHHHhCCCeEEEE-cCChhhHHHHHh
Q 022237 1 MGFRMASNLMKAGYKMAVH-DVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~-dr~~~~~~~~~~ 31 (300)
||.++|+.|+++|++|.+. .|+++.++++.+
T Consensus 13 IG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~ 44 (244)
T d1edoa_ 13 IGKAIALSLGKAGCKVLVNYARSAKAAEEVSK 44 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 6999999999999999875 667777766643
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=85.22 E-value=0.45 Score=34.33 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=38.1
Q ss_pred ChHHHHHHHHhCCC-eEEEEcCChhhHHH----HHhC------CCC--CCCCHHHHhhcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM------GVP--TKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~-~V~~~dr~~~~~~~----~~~~------g~~--~~~~~~e~~~~adiVii~vp~~ 57 (300)
+|.++|..|+.++. ++.++|++++++.. +... ... .+.+.+ .++++|+|+++...+
T Consensus 12 VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag~~ 80 (142)
T d1uxja1 12 VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSGAP 80 (142)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeeecc
Confidence 37889988888776 89999999876532 2111 122 233444 568999999999654
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=85.20 E-value=0.25 Score=39.67 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=24.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChh-hHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCN-VMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~-~~~~~ 29 (300)
||.++|+.|+++|++|.+.+|+.+ .++.+
T Consensus 19 IG~aia~~la~~G~~Vv~~~r~~~~~~~~~ 48 (261)
T d1geea_ 19 LGKSMAIRFATEKAKVVVNYRSKEDEANSV 48 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence 589999999999999999999864 44443
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.70 E-value=0.47 Score=32.49 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhhhh
Q 022237 4 RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV 63 (300)
Q Consensus 4 ~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~~v 63 (300)
-+...|.+.|.+|.+||..-..-+ ...+.....++.++.+.+|+||+...+. .+.++
T Consensus 39 ~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~~-~~~~~ 95 (108)
T d1dlja3 39 DVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYDN-ELQDV 95 (108)
T ss_dssp HHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCCG-GGGGG
T ss_pred HHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCch-HHHhc
Confidence 467889999999999998754321 1234556679999999999877666554 65544
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=84.00 E-value=0.38 Score=38.20 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=25.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
||.++|+.|+++|++|.+.+|+++..+..
T Consensus 17 IG~aia~~la~~G~~V~~~~~~~~~~~~~ 45 (248)
T d2d1ya1 17 IGRAIAQAFAREGALVALCDLRPEGKEVA 45 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 68999999999999999999998765443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.95 E-value=0.36 Score=35.09 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=36.6
Q ss_pred ChHHHHHHHHhCCC--eEEEEcCChhh--HH----HHHhC----C--CCC---CCCHHHHhhcCCEEEEecC
Q 022237 1 MGFRMASNLMKAGY--KMAVHDVNCNV--MK----MFSDM----G--VPT---KETPFEVAEASDVVITMLP 55 (300)
Q Consensus 1 mG~~la~~l~~~G~--~V~~~dr~~~~--~~----~~~~~----g--~~~---~~~~~e~~~~adiVii~vp 55 (300)
+|.++|..|+..|. ++.++|++++. ++ ++... . ... .++..+.+++||+|+++..
T Consensus 12 VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVitAG 83 (145)
T d1hyea1 12 VGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIITSG 83 (145)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEECCS
T ss_pred HHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEecc
Confidence 47899999998885 89999998642 22 23221 1 111 1234567899999999864
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=83.83 E-value=0.38 Score=35.96 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCeEEEEcCChhhHHHHHh--------CC----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 13 GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 13 G~~V~~~dr~~~~~~~~~~--------~g----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
+.++.++|+++++++.... .+ +..+++.+|++++||+|++++...
T Consensus 31 ~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~~~~~g 87 (171)
T d1obba1 31 GSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVG 87 (171)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEeeecccc
Confidence 4589999999998754221 12 234568899999999999998554
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.69 E-value=0.39 Score=38.26 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=27.2
Q ss_pred ChHHHHHHHHh---CCCeEEEEcCChhhHHHHHh
Q 022237 1 MGFRMASNLMK---AGYKMAVHDVNCNVMKMFSD 31 (300)
Q Consensus 1 mG~~la~~l~~---~G~~V~~~dr~~~~~~~~~~ 31 (300)
||.++|+.|++ +|++|++.+|++++++++.+
T Consensus 18 IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~ 51 (259)
T d1oaaa_ 18 FGRALAPQLARLLSPGSVMLVSARSESMLRQLKE 51 (259)
T ss_dssp HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence 58999999986 79999999999998887754
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=83.28 E-value=0.57 Score=38.73 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC---------------CCCCCCCHHHHhhcCCEEEEec
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---------------GVPTKETPFEVAEASDVVITML 54 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~---------------g~~~~~~~~e~~~~adiVii~v 54 (300)
+|+.+++.|.++||+|.+..|+.++...+... .+....+..+++.++|.|+-+.
T Consensus 23 IGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a 91 (342)
T d1y1pa1 23 VASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA 91 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred HHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhc
Confidence 58999999999999999999998776655321 1222234556788899888655
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=82.75 E-value=0.38 Score=35.88 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=32.0
Q ss_pred eEEEEcCChhhHHHHHhC--------C----CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 15 KMAVHDVNCNVMKMFSDM--------G----VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 15 ~V~~~dr~~~~~~~~~~~--------g----~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
++.++|+++++++..... + .....+..|++++||+||++.-.+
T Consensus 34 eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvitag~~ 88 (167)
T d1u8xx1 34 KLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVG 88 (167)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCTT
T ss_pred EEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEECCCcC
Confidence 799999999987632221 2 234568889999999999998553
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=82.58 E-value=1.8 Score=29.97 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 022237 249 LNLALASAKEVGVDCPLTSQAQDIYAKLC 277 (300)
Q Consensus 249 ~~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 277 (300)
...+.+.++++|+++|..+.++++++...
T Consensus 94 ~G~vv~~a~~~gi~tP~~~~l~~lik~~E 122 (124)
T d1ks9a1 94 NGFLLRRARAHGIAVPENTRLFEMVKRKE 122 (124)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 58899999999999999999999887654
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=82.56 E-value=1.4 Score=32.21 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=44.3
Q ss_pred hHH-HHHHHHhCCC-eEE-EEcCChhh--HHHHHhCCCCCCCC-HHHHh-----hcCCEEEEecCChhhhhhhhcCCCCc
Q 022237 2 GFR-MASNLMKAGY-KMA-VHDVNCNV--MKMFSDMGVPTKET-PFEVA-----EASDVVITMLPSSSHVLDVYNGPNGL 70 (300)
Q Consensus 2 G~~-la~~l~~~G~-~V~-~~dr~~~~--~~~~~~~g~~~~~~-~~e~~-----~~adiVii~vp~~~~~~~v~~~~~~~ 70 (300)
|+. +.+.|....+ ++. +.+|+++. .....+.|.....+ .++.. .+.|+||+|+|.....+.-..
T Consensus 16 g~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h~~~~~~----- 90 (157)
T d1nvmb1 16 GTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEAL----- 90 (157)
T ss_dssp HHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHHHHHHHH-----
T ss_pred HHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhHHHhHHH-----
Confidence 443 4445544433 554 56888753 34445567655443 33332 368999999998755442210
Q ss_pred ccCCCCCCCeEEEEcCC
Q 022237 71 LQGGNSVRPQLLIDSST 87 (300)
Q Consensus 71 l~~~~~~~~~ivid~st 87 (300)
... ...|..|||.|.
T Consensus 91 ~~a--a~~G~~VID~s~ 105 (157)
T d1nvmb1 91 LRQ--AKPGIRLIDLTP 105 (157)
T ss_dssp HHH--HCTTCEEEECST
T ss_pred HHH--HHcCCEEEEccc
Confidence 100 234589999887
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=82.42 E-value=0.58 Score=36.77 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHHHhC-CCCCCCCHHHHh-hcCCEEEEecCCh
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSS 57 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~~~~~e~~-~~adiVii~vp~~ 57 (300)
+|..+|+.|.+.|..|++.|.++..++.+... |.... ++.+.. ..|||++-|--..
T Consensus 50 VG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~~~ 107 (230)
T d1leha1 50 VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGA 107 (230)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSC
T ss_pred HHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccccc
Confidence 48899999999999999999999998877664 54443 445544 5899999887544
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=82.36 E-value=0.51 Score=37.64 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=24.8
Q ss_pred ChHHHHHHHHhCCCeEEEEcCCh-hhHHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNC-NVMKMFS 30 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~-~~~~~~~ 30 (300)
||.++|+.|++.|++|.+.+|+. +.++++.
T Consensus 16 IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~ 46 (260)
T d1x1ta1 16 IGLGIATALAAQGADIVLNGFGDAAEIEKVR 46 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence 69999999999999999999974 5555543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.35 E-value=0.41 Score=37.98 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.3
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVM 26 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~ 26 (300)
||.++|+.|+++|++|++.+|+.++.
T Consensus 13 IG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 13 IGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCchHH
Confidence 59999999999999999999986654
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=82.10 E-value=0.42 Score=35.53 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=39.4
Q ss_pred ChHHHHHHHHhC-CCeEE-EEcCChhhHHHHHhCCCCCCCCHHHHhhcCCEEEEecCChhhhh
Q 022237 1 MGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 61 (300)
Q Consensus 1 mG~~la~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~adiVii~vp~~~~~~ 61 (300)
||+..++.|.+. ++++. ++|++++.... .+.....+..+...+.|+|++|+|.....+
T Consensus 14 ig~~~~~~l~~~~~~elvav~~~~~~~~~~---~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~ 73 (170)
T d1f06a1 14 LGRSVEKLIAKQPDMDLVGIFSRRATLDTK---TPVFDVADVDKHADDVDVLFLCMGSATDIP 73 (170)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEESSSCCSSS---SCEEEGGGGGGTTTTCSEEEECSCTTTHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEEecccccccc---cccccchhhhhhccccceEEEeCCCcccHH
Confidence 577778888764 46654 67998764332 233344556667789999999999985443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=81.45 E-value=2 Score=31.71 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=42.3
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCCCCC-------HHHHh-----hcCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~-------~~e~~-----~~adiVii~vp~~~~~~~v~ 64 (300)
|...++.+...|. .|++.|+++++.+...+.|+...-+ ..... ...|++|-|+..+..+.+-+
T Consensus 41 Gl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~ 116 (174)
T d1e3ia2 41 GLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAV 116 (174)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHH
Confidence 5556666667787 6888999999999988888643221 11111 24788888887775555544
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=80.80 E-value=0.56 Score=37.07 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.0
Q ss_pred ChHHHHHHHHhCCCeEEEEcCChhhHHHH
Q 022237 1 MGFRMASNLMKAGYKMAVHDVNCNVMKMF 29 (300)
Q Consensus 1 mG~~la~~l~~~G~~V~~~dr~~~~~~~~ 29 (300)
+|.++|+.|++.|++|++.+|+++..+.+
T Consensus 19 IG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 19 IAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 36899999999999999999987655444
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.40 E-value=1.9 Score=31.74 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=42.2
Q ss_pred hHHHHHHHHhCCC-eEEEEcCChhhHHHHHhCCCCCCCC-------HHHHh-----hcCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~-------~~e~~-----~~adiVii~vp~~~~~~~v~ 64 (300)
|...++.+...|. +|++.|+++++++...+.|+...-+ ..+.. ...|++|.++..+...++.+
T Consensus 40 Gl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~ 115 (174)
T d1p0fa2 40 GFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNAL 115 (174)
T ss_dssp HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHH
T ss_pred hHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHH
Confidence 5566666666786 6999999999999999988754321 12222 14688888877765554444
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=80.23 E-value=0.69 Score=34.06 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=32.7
Q ss_pred CeEEEEcCChhhHHHHHhC-------C--CCCCCCHHHHhhcCCEEEEecCCh
Q 022237 14 YKMAVHDVNCNVMKMFSDM-------G--VPTKETPFEVAEASDVVITMLPSS 57 (300)
Q Consensus 14 ~~V~~~dr~~~~~~~~~~~-------g--~~~~~~~~e~~~~adiVii~vp~~ 57 (300)
.++.++|++++++...... . .....+..+++++||+|+++...+
T Consensus 30 ~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~~~ 82 (162)
T d1up7a1 30 DEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPG 82 (162)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCTT
T ss_pred cEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecccC
Confidence 5899999999987644321 1 234567889999999999998544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=80.17 E-value=0.86 Score=31.87 Aligned_cols=57 Identities=21% Similarity=0.172 Sum_probs=40.2
Q ss_pred hHHHHHHHHhCCCeEEEEcCChhhHHHHHhCCCCC----CCCHHHH----hhcCCEEEEecCChhhh
Q 022237 2 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFEV----AEASDVVITMLPSSSHV 60 (300)
Q Consensus 2 G~~la~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~e~----~~~adiVii~vp~~~~~ 60 (300)
|..+++.| .|++|.+.+.++++.+.+...|... ..+++-+ +.+|+.++++.+++..-
T Consensus 12 g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n 76 (129)
T d2fy8a1 12 TLECLREL--RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET 76 (129)
T ss_dssp HHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH
T ss_pred HHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh
Confidence 56677776 4678899999999999998877532 1222211 46889999999887543
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| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=80.15 E-value=1.4 Score=32.48 Aligned_cols=63 Identities=10% Similarity=0.150 Sum_probs=38.1
Q ss_pred hHHHHHHHHhCCCe-EEEEcCChhhHHHHHhCCCCC-----CCCHHHHhh-----cCCEEEEecCChhhhhhhh
Q 022237 2 GFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVPT-----KETPFEVAE-----ASDVVITMLPSSSHVLDVY 64 (300)
Q Consensus 2 G~~la~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~-----~~~~~e~~~-----~adiVii~vp~~~~~~~v~ 64 (300)
|...++.+...|.. |++.|+++++.+.+.+.|+.. ..+..+.++ ..|+||.|+..+..++..+
T Consensus 41 G~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~ 114 (174)
T d1f8fa2 41 GLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGV 114 (174)
T ss_dssp HHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHH
T ss_pred HhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHH
Confidence 55566666666775 567799999998888877532 123333322 2567777766654444433
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