Citrus Sinensis ID: 022246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYISHI
Secondary Structure (PSIPRED)
ccccEEEEEcccccccccHHHHHHHcccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHEEHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHEHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHcc
Coil and Loop (DISEMBL)
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVAlncnftsnnsicmrdMGMKLTRATQGVETLFRstvkprsvkaqasagdieeatpfkpqakkssgvvlpFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLagatvgsftggsladkfgrtrtfqldavplAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVplyiseispteirgALGSVNQLFICVGILAALVAglplagnplwwrTMFGLAAIPSILLALgmglspespRWLFQVFLHDYISHI
Flexible Loop (DISEMBL)
mqastyaikasvcfdarNRRRACVLAAgfantrsvalncnFTSNNSICMRDMGMKLTRATQGVEtlfrstvkprsvkaqasagdieeatpfkpqakksSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYISHI
Low Complexity Region (SEG)
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLagigigissaiVPLYISEISPTEIRGALGSVNQLFICVGIlaalvaglplagnplWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYISHI
Disordered region (IsUnstruct)
*****YAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLF********************************GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYI***
Disordered Region (DISOPRED)
******A**ASVCFDARNR**********************************************************************************VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLH******
Disordered Region (DISEMBL)
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFRSTV*************IEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYISHI
Disordered Region (DISPRO)
**ASTYAIKASVCFDARNRRRACVLAAG**NTRSVAL**N********************************************************KSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFL*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYISHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q56ZZ7	546	Plastidic glucose transpo	yes	no	0.953	0.523	0.723	1e-114
Q0WVE9	524	Probable plastidic glucos	no	no	0.69	0.395	0.452	6e-50
Q2V4B9	495	Probable plastidic glucos	no	no	0.65	0.393	0.457	5e-45
Q9FYG3	493	Probable plastidic glucos	no	no	0.79	0.480	0.403	1e-43
C0SPB2	457	Putative metabolite trans	yes	no	0.63	0.413	0.443	2e-36
P46333	461	Probable metabolite trans	no	no	0.623	0.405	0.398	3e-33
Q9ZQP6	580	Probable inositol transpo	no	no	0.606	0.313	0.437	9e-32
O52733	457	D-xylose-proton symporter	yes	no	0.666	0.437	0.375	1e-30
Q96QE2	648	Proton myo-inositol cotra	yes	no	0.683	0.316	0.379	6e-30
P0AEP1	464	Galactose-proton symporte	N/A	no	0.646	0.418	0.380	2e-29

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/297 (72%), Positives = 240/297 (80%), Gaps = 11/297 (3%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct: 1   MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
           L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58  LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
           ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176

Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
           FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236

Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM  SPESPRWL Q
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQ 293

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/212 (45%), Positives = 143/212 (67%), Gaps = 5/212 (2%)

Query: 84  DIEEATPFKPQAKKSSGV----VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAEN 139
           D  E +P  P+ K S+ +      P V VA +   LFGYH+GV+NG +  +A++LG   N
Sbjct: 58  DDHEISPVPPE-KFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGN 116

Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199
           ++L+G +VS  +AGA +GS   G L DKFG  RTFQ+  +PL  GA + A A S+  ++ 
Sbjct: 117 SILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILC 176

Query: 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259
           GR L G+GIG+++ +VP+YISE++PT+ RG+LG++ Q+  C+GI+ +L+ G+P   +P W
Sbjct: 177 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHW 236

Query: 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQV 291
           WRTM  +A++P  LLALGM  + ESPRWL +V
Sbjct: 237 WRTMLYVASMPGFLLALGMQFAVESPRWLCKV 268

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 131/199 (65%), Gaps = 4/199 (2%)

Query: 92  KPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLL 151
            P  K+S    LP V VA L ++LFGYHLGVVN  LE ++ DLG + NT+ +G +VS+ L
Sbjct: 48  NPSWKRS----LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCL 103

Query: 152 AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS 211
            GA +GS   G +AD  GR R FQL A+P+  GA + A+ +S+  M++GR L GIG+GI 
Sbjct: 104 GGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIG 163

Query: 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271
            ++  LY++E+SP  +RG  GS  Q+  C+G+L +L AG+P   N  WWR  F ++ +P+
Sbjct: 164 PSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPA 223

Query: 272 ILLALGMGLSPESPRWLFQ 290
            +LA+ M L  ESP+WLF+
Sbjct: 224 AMLAVFMELCVESPQWLFK 242

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 140/238 (58%), Gaps = 1/238 (0%)

Query: 54  MKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSS-GVVLPFVGVACLG 112
           + L R T  +     S      +  + S+G +E     + +    S    LP V VA + 
Sbjct: 2   LGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATIS 61

Query: 113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR 172
           + LFGYHLGVVN  LE ++ DLG + +T+ +G +VS  L GA +GS   G +AD FGR R
Sbjct: 62  SFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRR 121

Query: 173 TFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALG 232
            FQ+ A+P+  GAF+   + S+  M++GR L G G+G+   +  LY++E+SP  +RG  G
Sbjct: 122 AFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYG 181

Query: 233 SVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           S  Q+  C+G++AAL  G+P+     WWR  F L+ IP+ LLALGM L  ESP+WLF+
Sbjct: 182 SFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFK 239

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 120/194 (61%), Gaps = 5/194 (2%)

Query: 96  KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
           KK S + L F G   LG  L+GY  GV++GA+ ++ K+LG+  N   +G +VSSLL GA 
Sbjct: 2   KKQSNIWLYFFG--ALGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAI 57

Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
           +GS   G L D+FGR +     A+    G    A A +   M++ R++ G+ +G S+ IV
Sbjct: 58  LGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIV 117

Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275
           PLY+SE++P   RGAL S+NQL I VGIL + +     A +   WR M GLAA+PS+LL 
Sbjct: 118 PLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFA-DAEAWRWMLGLAAVPSLLLL 176

Query: 276 LGMGLSPESPRWLF 289
           +G+   PESPRWLF
Sbjct: 177 IGILFMPESPRWLF 190

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 122/198 (61%), Gaps = 11/198 (5%)

Query: 96  KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
           K +   ++ F G   LG +L+GY  GV++GAL ++  D  I   T+ +G +VS LL GA 
Sbjct: 3   KDTRKYMIYFFG--ALGGLLYGYDTGVISGALLFINND--IPLTTLTEGLVVSMLLLGAI 58

Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
            GS   G+ +D++GR +   + ++    GA  CA +Q++  +I  RV+ G+ +G S+A+V
Sbjct: 59  FGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALV 118

Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGL---PLAGNPLWWRTMFGLAAIPSI 272
           P+Y+SE++PT+IRG LG++N L I  GIL A +      P       WR M GLAA+P++
Sbjct: 119 PVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA----WRWMVGLAAVPAV 174

Query: 273 LLALGMGLSPESPRWLFQ 290
           LL +G+   PESPRWL +
Sbjct: 175 LLLIGIAFMPESPRWLVK 192

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  137 bits (345), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 1/183 (0%)

Query: 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADK 167
           A +G +LFGY+ GV+ GAL Y+ ++ G  +N T LQ  IVS  +AGA VG+  GG   DK
Sbjct: 33  AGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDK 92

Query: 168 FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227
           FGR  +  +  V    GA +   A +   +I+GR+L G G+G++S   PLYISE+SP  I
Sbjct: 93  FGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARI 152

Query: 228 RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRW 287
           RGAL S N L I  G   + +  L     P  WR M G++AIP+I+    M   PESPRW
Sbjct: 153 RGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLMLTLPESPRW 212

Query: 288 LFQ 290
           L++
Sbjct: 213 LYR 215

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 120/205 (58%), Gaps = 5/205 (2%)

Query: 96  KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
           K S+G V  F     LG +LFGY  GV++GA+ ++ K + +      QGW+VS++L GA 
Sbjct: 3   KVSTGFVYFF---GALGGLLFGYDTGVISGAILFIQKQMNLGSWQ--QGWVVSAVLLGAI 57

Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
           +G+   G  +D+FGR +   L A+    GA   A +    T+II R++ G+ +G +SA++
Sbjct: 58  LGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALI 117

Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275
           P Y++E++P++ RG + S+ QL +  GIL A +     +G    WR M G AAIP+ LL 
Sbjct: 118 PTYLAELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLF 177

Query: 276 LGMGLSPESPRWLFQVFLHDYISHI 300
           LG  + PESPR+L +    D   H+
Sbjct: 178 LGGLILPESPRFLVKSGHLDEARHV 202

Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system).

Lactobacillus brevis (taxid: 1580)

>sp|Q96QE2|MYCT_HUMAN Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=3

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 117/208 (56%), Gaps = 3/208 (1%)

Query: 84  DIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ 143
           D+E A   + Q  ++   V      + LG  LFGY  GVV+GA+  L + L +  + + Q
Sbjct: 63  DLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL--DALWQ 120

Query: 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
             +VSS +  A V +  GG+L   FGR     L +    AG+ + A A + +T++ GR++
Sbjct: 121 ELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLV 180

Query: 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRT 262
            G+GIGI+S  VP+YI+E+SP  +RG L ++N LFI  G   A++V G         WR 
Sbjct: 181 VGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRY 240

Query: 263 MFGLAAIPSILLALGMGLSPESPRWLFQ 290
           M GLAA+P+++   G    PESPRWL Q
Sbjct: 241 MLGLAAVPAVIQFFGFLFLPESPRWLIQ 268

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Homo sapiens (taxid: 9606)

>sp|P0AEP1|GALP_ECOLI Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 119/197 (60%), Gaps = 3/197 (1%)

Query: 92  KPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLL 151
           K Q + +  +      +A L  +LFG  +GV+ GAL ++A +  I  +T  Q W+VSS++
Sbjct: 5   KKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHT--QEWVVSSMM 62

Query: 152 AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS 211
            GA VG+   G L+ K GR ++  + A+   AG+   A A +V+ +I+ RVL G+ +G++
Sbjct: 63  FGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVA 122

Query: 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271
           S   PLY+SEI+P +IRG++ S+ QL I +GIL A ++    +     WR M G+  IP+
Sbjct: 123 SYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGA-WRWMLGVIIIPA 181

Query: 272 ILLALGMGLSPESPRWL 288
           ILL +G+   P+SPRW 
Sbjct: 182 ILLLIGVFFLPDSPRWF 198

Uptake of galactose across the boundary membrane with the concomitant transport of protons into the cell (symport system).

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
297807643	545	GLT1 [Arabidopsis lyrata subsp. lyrata]	0.953	0.524	0.726	1e-116
398806194	547	hexose transporter [Camellia sinensis]	0.95	0.521	0.725	1e-113
222423889	546	AT5G16150 [Arabidopsis thaliana]	0.953	0.523	0.723	1e-113
18417892	546	Plastidic glucose transporter 4 [Arabido	0.953	0.523	0.723	1e-113
225452080	542	PREDICTED: plastidic glucose transporter	0.946	0.523	0.722	1e-111
9858106	555	putative glucose translocator [Mesembrya	0.946	0.511	0.688	1e-111
8347250	515	hexose transporter [Arabidopsis thaliana	0.86	0.500	0.779	1e-111
9755825	560	sugar transporter-like protein [Arabidop	0.953	0.510	0.691	1e-110
8347242	551	hexose transporter [Spinacia oleracea]	0.963	0.524	0.688	1e-108
15625046	544	hexose transporter pGlT [Olea europaea]	0.953	0.525	0.691	1e-107

>gi|297807643|ref|XP_002871705.1| GLT1 [Arabidopsis lyrata subsp. lyrata] gi|297317542|gb|EFH47964.1| GLT1 [Arabidopsis lyrata subsp. lyrata]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/296 (72%), Positives = 243/296 (82%), Gaps = 10/296 (3%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F    R     R A      FA+ +S+A       + S   + MG K
Sbjct: 1   MQSSTYAVKGNAAFAFHRRTLSSNRSATSTGIRFADKKSIATTGPLYCSGS---KAMGAK 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAI 114
           L RA  G++++   S+VK RSV+AQAS+GD EEA P + + K+S G VLPFVGVACLGAI
Sbjct: 58  LARAENGIQSVMSFSSVKARSVRAQASSGDAEEAIPLRSEGKRS-GTVLPFVGVACLGAI 116

Query: 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174
           LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVS+LLAGATVGSFTGG+LADKFGRTRTF
Sbjct: 117 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSALLAGATVGSFTGGALADKFGRTRTF 176

Query: 175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV 234
           QLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGSV
Sbjct: 177 QLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSV 236

Query: 235 NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           NQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM  SPESPRWL Q
Sbjct: 237 NQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQ 292

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|398806194|gb|AFP19448.1| hexose transporter [Camellia sinensis]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/299 (72%), Positives = 241/299 (80%), Gaps = 14/299 (4%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVAL---NCNFTSNNSICMRDMG---- 53
           MQA+TYA K S  FD + RR       GF+  R   L   N   T  +S     +G    
Sbjct: 1   MQAATYASKGSXRFDNQKRR----FLPGFSELRKRGLGFNNLRMTERSSCFGLRLGSVAM 56

Query: 54  -MKLTRATQGVETLFRSTVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACL 111
             +L R   GV+ +FRS+ K RSV+AQASA GD+E+  P K QAK SSG VLP VGVACL
Sbjct: 57  EAELGRVRTGVDRVFRSSAKARSVRAQASADGDMEDLVPAKIQAK-SSGNVLPXVGVACL 115

Query: 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171
           GAILFGYHLGVVNGALEYL+KDLGIAENTV+QGWIVS+LLAGATVGSFTGG+LADKFGRT
Sbjct: 116 GAILFGYHLGVVNGALEYLSKDLGIAENTVIQGWIVSTLLAGATVGSFTGGALADKFGRT 175

Query: 172 RTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL 231
           +TFQLDA+PLA GAFLC TAQSVQTMIIGR+LAGIGIGISSAIVPLYISEISPTEIRG L
Sbjct: 176 KTFQLDAIPLAVGAFLCTTAQSVQTMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGTL 235

Query: 232 GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           GSVNQLFIC+GILAALVAGLPLAGNPLWWR+MFG+A IPS+LLALGM  SPESPRWL+Q
Sbjct: 236 GSVNQLFICIGILAALVAGLPLAGNPLWWRSMFGIAMIPSVLLALGMAFSPESPRWLYQ 294

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423889|dbj|BAH19908.1| AT5G16150 [Arabidopsis thaliana]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/297 (72%), Positives = 240/297 (80%), Gaps = 11/297 (3%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct: 1   MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
           L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58  LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
           ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176

Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
           FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236

Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM  SPESPRWL Q
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQ 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417892|ref|NP_568328.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|30685706|ref|NP_850828.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|42573381|ref|NP_974787.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|117940139|sp|Q56ZZ7.2|PLST4_ARATH RecName: Full=Plastidic glucose transporter 4; Short=AtpGlcT gi|16648753|gb|AAL25568.1| AT5g16150/T21H19_70 [Arabidopsis thaliana] gi|20259506|gb|AAM13873.1| putative sugar transporter [Arabidopsis thaliana] gi|21436467|gb|AAM51434.1| putative sugar transporter [Arabidopsis thaliana] gi|332004870|gb|AED92253.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|332004871|gb|AED92254.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|332004872|gb|AED92255.1| Plastidic glucose transporter 4 [Arabidopsis thaliana]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/297 (72%), Positives = 240/297 (80%), Gaps = 11/297 (3%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct: 1   MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
           L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58  LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
           ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176

Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
           FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236

Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM  SPESPRWL Q
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQ 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452080|ref|XP_002284052.1| PREDICTED: plastidic glucose transporter 4 [Vitis vinifera] gi|51574116|gb|AAU07980.1| plastid hexose transporter [Vitis vinifera] gi|296087262|emb|CBI33636.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/295 (72%), Positives = 234/295 (79%), Gaps = 11/295 (3%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNS-----ICMRDMGMK 55
           MQ STYA K S+  + +NRR        F    S   N   T+N +     I    MG +
Sbjct: 1   MQTSTYAAKGSIGLELQNRRVFPRFGE-FRKQSSCVKNLRVTNNTTSSGLRIGSVVMGAE 59

Query: 56  LTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAIL 115
             R    +E +FR    PRSVKA+AS GDIE+     PQ K SSG VLPFVGVACLGAIL
Sbjct: 60  FGRPRTRIEAVFR----PRSVKARASGGDIEDVDVTAPQGK-SSGTVLPFVGVACLGAIL 114

Query: 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175
           FGYHLGVVNGALEYL+KDLGIAEN VLQGW+VS+LLAGAT+GSFTGG+LADKFGRTRTFQ
Sbjct: 115 FGYHLGVVNGALEYLSKDLGIAENAVLQGWVVSTLLAGATLGSFTGGALADKFGRTRTFQ 174

Query: 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235
           LDA+PLA GAFLCATAQSVQTMIIGR+LAGIGIGISSA+VPLYISEISPTEIRGALGSVN
Sbjct: 175 LDAIPLAVGAFLCATAQSVQTMIIGRLLAGIGIGISSALVPLYISEISPTEIRGALGSVN 234

Query: 236 QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           QLFIC+GILAALVAGLPLA NPLWWRTMFG+A +PSILLALGM  SPESPRWLFQ
Sbjct: 235 QLFICIGILAALVAGLPLARNPLWWRTMFGVAVVPSILLALGMAFSPESPRWLFQ 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9858106|gb|AAG00995.1|AF286906_1 putative glucose translocator [Mesembryanthemum crystallinum]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/308 (68%), Positives = 245/308 (79%), Gaps = 24/308 (7%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAG---FANTRSV---------------ALNCNFT 42
           MQAS+  +K ++ F+ +NRRR  +  AG   F N+  +               + +C  T
Sbjct: 1   MQASSCLVKGNLGFEVQNRRRGVLAVAGLGGFKNSSPILSSNLRFVNGVINKKSSSCKLT 60

Query: 43  SNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVV 102
           ++ S+ M   G  L R   G++ +F+ST K RSVKAQA++GD E+  P K Q K SS  V
Sbjct: 61  TSGSVLM---GAGLAR--MGLDHVFQSTAKYRSVKAQAASGDYEDPAPVKFQGK-SSASV 114

Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
           LP+VGVACLGAILFGYHLGVVNGALEYL+ DLGIA NTVLQGW+VS LLAGATVGSFTGG
Sbjct: 115 LPYVGVACLGAILFGYHLGVVNGALEYLSPDLGIAGNTVLQGWVVSILLAGATVGSFTGG 174

Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
           SLADKFGRTRTFQLDA+PLA GA+LCATAQSVQTM+IGR+L GIGIGISSA+VPLYISEI
Sbjct: 175 SLADKFGRTRTFQLDAIPLAIGAYLCATAQSVQTMMIGRLLCGIGIGISSALVPLYISEI 234

Query: 223 SPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282
           SPTEIRGALGSVNQLFIC+GILAALVAGLPLAGNPLWWRTMFG+AAIPS+LLALGM + P
Sbjct: 235 SPTEIRGALGSVNQLFICIGILAALVAGLPLAGNPLWWRTMFGIAAIPSVLLALGMAMCP 294

Query: 283 ESPRWLFQ 290
           ESPRWLFQ
Sbjct: 295 ESPRWLFQ 302

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8347250|gb|AAF74569.1|AF215855_1 hexose transporter [Arabidopsis thaliana]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/263 (77%), Positives = 226/263 (85%), Gaps = 5/263 (1%)

Query: 29  FANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFR-STVKPRSVKAQASAGDIEE 87
           FA  +S+A       + S     MG  L RA  G++++   S+VK RSV+AQAS+GD EE
Sbjct: 1   FAGYKSLATTGPLYCSGS---EAMGATLARADNGIQSVMSFSSVKARSVRAQASSGDEEE 57

Query: 88  ATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV 147
           A P + + K SSG VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV
Sbjct: 58  AIPLRSEGK-SSGTVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV 116

Query: 148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207
           SSLLAGATVGSFTGG+LADKFGRTRTFQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIG
Sbjct: 117 SSLLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIG 176

Query: 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267
           IGISSAIVPLYISEISPTEIRGALGSVNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A
Sbjct: 177 IGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVA 236

Query: 268 AIPSILLALGMGLSPESPRWLFQ 290
            IPS+LLA+GM  SPESPRWL Q
Sbjct: 237 VIPSVLLAIGMAFSPESPRWLVQ 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9755825|emb|CAC01856.1| sugar transporter-like protein [Arabidopsis thaliana]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/311 (69%), Positives = 240/311 (77%), Gaps = 25/311 (8%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct: 1   MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
           L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58  LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQG--------------WIVSSLLAGATVGSF 159
           ILFGYHLGVVNGALEYLAKDLGIAENTVLQG              WIVSSLLAGATVGSF
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGKYMMIHFFTPPVNGWIVSSLLAGATVGSF 176

Query: 160 TGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYI 219
           TGG+LADKFGRTRTFQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYI
Sbjct: 177 TGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYI 236

Query: 220 SEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279
           SEISPTEIRGALGSVNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM 
Sbjct: 237 SEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMA 296

Query: 280 LSPESPRWLFQ 290
            SPESPRWL Q
Sbjct: 297 FSPESPRWLVQ 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8347242|gb|AAF74565.1|AF215851_1 hexose transporter [Spinacia oleracea]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/299 (68%), Positives = 240/299 (80%), Gaps = 10/299 (3%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLA-AGFANTRSVALN-CNFTSNN------SICMRDM 52
           MQAST+ +K ++ F+ +NRR A +    G ++ RS  L+  N   NN       +    +
Sbjct: 1   MQASTFMVKGNLGFEVQNRRVAGLAGLKGLSSIRSNNLSFVNVNDNNYKSNPCKLSCGSL 60

Query: 53  GMKLTRATQGVETLFRSTVKPRSVKAQA-SAGDIEEATPFKPQAKKSSGVVLPFVGVACL 111
            M    A  G++ + +S+ K RSVKAQA S GD+E+ATP K Q K SS  VLP+VGVACL
Sbjct: 61  SMGAGFARLGLDHVMKSSPKYRSVKAQAASGGDLEDATPVKYQGK-SSASVLPYVGVACL 119

Query: 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171
           GAILFGYHLGVVNGAL+YL+ DL IA NTVLQGW+VS LLAGATVGSFTGGSLADKFGRT
Sbjct: 120 GAILFGYHLGVVNGALDYLSADLAIAGNTVLQGWVVSILLAGATVGSFTGGSLADKFGRT 179

Query: 172 RTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL 231
           +TFQLDA+PLA GA+LCATAQ+VQ M+IGR+L GIGIGISSA+VPLYISEISPTEIRGAL
Sbjct: 180 KTFQLDAIPLAIGAYLCATAQNVQIMMIGRLLCGIGIGISSALVPLYISEISPTEIRGAL 239

Query: 232 GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           GSVNQLFIC+GILAALVAGLPLAGNPLWWRTMFG+A +PS+LLALGMG  PESPRWLFQ
Sbjct: 240 GSVNQLFICIGILAALVAGLPLAGNPLWWRTMFGIATVPSVLLALGMGFCPESPRWLFQ 298

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15625046|gb|AAK62031.1| hexose transporter pGlT [Olea europaea]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/295 (69%), Positives = 232/295 (78%), Gaps = 9/295 (3%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRAT 60
           MQ ST+A+K ++C   +N R          N    A++    +  S C    G+ L    
Sbjct: 1   MQVSTHAVKGNLCLGLQNLRPLPSSRELRENNLGFAVSELRMTKRSSCF---GIGLDSIA 57

Query: 61  QGV-----ETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAIL 115
            G      ++++ S  K RSV+AQA  GD+E+  P K Q K SSG VLP+VGVACLGAIL
Sbjct: 58  MGARGNWPKSVYGSLAKARSVRAQAYEGDVEDVAPAKIQVK-SSGTVLPYVGVACLGAIL 116

Query: 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175
           FGYHLGVVNGALEYLAKDLGIAEN VLQGW+VS+LLAGATVGSFTGGSLADKFGRT+TF 
Sbjct: 117 FGYHLGVVNGALEYLAKDLGIAENAVLQGWVVSTLLAGATVGSFTGGSLADKFGRTKTFL 176

Query: 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235
           LDA+PLA GAFLCATAQ+++TMIIGR+LAGIGIGISSAIVPLYISEISPTEIRG LGSVN
Sbjct: 177 LDAIPLAVGAFLCATAQNIETMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGTLGSVN 236

Query: 236 QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
           QLFIC+GILAALVAGLPLAGNPLWWRTMFG+A IPSILLALGM  SPESPRWL+Q
Sbjct: 237 QLFICIGILAALVAGLPLAGNPLWWRTMFGVAIIPSILLALGMAFSPESPRWLYQ 291

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.953	0.523	0.643	2.5e-90
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.78	0.446	0.385	7.5e-41
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.626	0.380	0.425	6.3e-37
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.626	0.379	0.409	2.7e-36
UNIPROTKB|P0AEP1	464	galP "galactose:H+ symporter"	0.64	0.413	0.376	6.2e-30
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.633	0.410	0.372	3.4e-29
UNIPROTKB|F1SHN8	316	F1SHN8 "Uncharacterized protei	0.686	0.651	0.344	2.8e-27
UNIPROTKB|E9PE47	357	SLC2A13 "Proton myo-inositol c	0.686	0.577	0.339	4.5e-27
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	0.703	0.414	0.338	1e-26
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.606	0.313	0.404	1.8e-26

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 191/297 (64%), Positives = 215/297 (72%)

Query:     1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
             MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct:     1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query:    56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
             L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct:    58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query:   114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
             ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct:   117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176

Query:   174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGS 233
             FQLDA+PLA GAFLCATAQSVQTMI+GR+L           VPLYISEISPTEIRGALGS
Sbjct:   177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236

Query:   234 VNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
             VNQLFIC+GI               WWRTMFG+A IPS+LLA+GM  SPESPRWL Q
Sbjct:   237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQ 293

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 93/241 (38%), Positives = 136/241 (56%)

Query:    57 TRATQGVETLFRSTVKPRSVKAQASA--GDIEEATPFKPQAKKSSGV----VLPFVGVAC 110
             +R        FRS+ + + V   ++    D  E +P  P+ K S+ +      P V VA 
Sbjct:    29 SRKASSFSRFFRSSKRKKRVTTLSTKKPDDDHEISPVPPE-KFSADLGWLSAFPHVSVAS 87

Query:   111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
             +   LFGYH+GV+NG +  +A++LG   N++L+G +VS  +AGA +GS   G L DKFG 
Sbjct:    88 MANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGY 147

Query:   171 TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGA 230
              RTFQ+  +PL  GA + A A S+  ++ GR L           VP+YISE++PT+ RG+
Sbjct:   148 RRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 207

Query:   231 LGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
             LG++ Q+  C+GI               WWRTM  +A++P  LLALGM  + ESPRWL +
Sbjct:   208 LGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGMQFAVESPRWLCK 267

Query:   291 V 291
             V
Sbjct:   268 V 268

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 80/188 (42%), Positives = 110/188 (58%)

Query:   103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
             LP V VA + + LFGYHLGVVN  LE ++ DLG + +T+ +G +VS  L GA +GS   G
Sbjct:    52 LPHVLVATISSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSG 111

Query:   163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEI 222
              +AD FGR R FQ+ A+P+  GAF+   + S+  M++GR L             LY++E+
Sbjct:   112 GVADGFGRRRAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEV 171

Query:   223 SPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSP 282
             SP  +RG  GS  Q+  C+G+               WWR  F L+ IP+ LLALGM L  
Sbjct:   172 SPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCA 231

Query:   283 ESPRWLFQ 290
             ESP+WLF+
Sbjct:   232 ESPQWLFK 239

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 77/188 (40%), Positives = 111/188 (59%)

Query:   103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
             LP V VA L ++LFGYHLGVVN  LE ++ DLG + NT+ +G +VS+ L GA +GS   G
Sbjct:    55 LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSG 114

Query:   163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEI 222
              +AD  GR R FQL A+P+  GA + A+ +S+  M++GR L             LY++E+
Sbjct:   115 LVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEV 174

Query:   223 SPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSP 282
             SP  +RG  GS  Q+  C+G+               WWR  F ++ +P+ +LA+ M L  
Sbjct:   175 SPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCV 234

Query:   283 ESPRWLFQ 290
             ESP+WLF+
Sbjct:   235 ESPQWLFK 242

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|P0AEP1 galP "galactose:H+ symporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 75/199 (37%), Positives = 111/199 (55%)

Query:    93 PQAKK---SSGVVLPFVG-VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVS 148
             P AKK   S+  +  FV  +A L  +LFG  +GV+ GAL ++A +  I  +T  Q W+VS
Sbjct:     2 PDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHT--QEWVVS 59

Query:   149 SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXX 208
             S++ GA VG+   G L+ K GR ++  + A+   AG+   A A +V+ +I+ RVL     
Sbjct:    60 SMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAV 119

Query:   209 XXXXXXVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAA 268
                    PLY+SEI+P +IRG++ S+ QL I +GI               W R M G+  
Sbjct:   120 GVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAW-RWMLGVII 178

Query:   269 IPSILLALGMGLSPESPRW 287
             IP+ILL +G+   P+SPRW
Sbjct:   179 IPAILLLIGVFFLPDSPRW 197

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015517 "galactose:hydrogen symporter activity" evidence=IDA

GO:0015757 "galactose transport" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query:    95 AKKSSGV-VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAG 153
             AKKS    V+ F+  A    ILFGY  GV++GA+ +++++  ++    + G++VS++L G
Sbjct:    11 AKKSHFYWVIAFI--AAFAGILFGYDTGVISGAILFISQEFHLSPQ--MNGFVVSAVLIG 66

Query:   154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXX 213
             A +G+   G LAD  GR R   +DA+    G  + +   S+  ++IGR++          
Sbjct:    67 AFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVGIAIGIASY 126

Query:   214 XVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSIL 273
               PLYISEISP   RGAL S+NQL + +GI               W R+MF    IP+ L
Sbjct:   127 SAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFAAGVIPAAL 185

Query:   274 LALGMGLSPESPRWLF 289
             L LGM + P SPRW+F
Sbjct:   186 LLLGMIVLPYSPRWIF 201

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

UNIPROTKB|F1SHN8 F1SHN8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 72/209 (34%), Positives = 105/209 (50%)

Query:    83 GDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVL 142
             GD+E A   + Q  ++   V      + LG  LFGY  GVV+GA+  L + L +  + + 
Sbjct:    63 GDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL--DALW 120

Query:   143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202
             Q  +VSS +  A V +  GG+L   FGR     L +    AG+ + A A + +T++ GR+
Sbjct:   121 QELLVSSTVGAAAVSALAGGALNGAFGRRAAILLASALFTAGSAVLAAANNKETLLAGRL 180

Query:   203 LXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG-IXXXXXXXXXXXXXXXWWR 261
             +           VP+YI+E+SP  +RG L ++N LFI  G                  WR
Sbjct:   181 VVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWR 240

Query:   262 TMFGLAAIPSILLALGMGLSPESPRWLFQ 290
              M GLAAIP+++   G    PESPRWL Q
Sbjct:   241 YMLGLAAIPAVIQFFGFLFLPESPRWLIQ 269

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|E9PE47 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 71/209 (33%), Positives = 105/209 (50%)

Query:    83 GDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVL 142
             GD+E A   + Q  ++   V      + LG  LFGY  GVV+GA+  L + L +  + + 
Sbjct:    62 GDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL--DALW 119

Query:   143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202
             Q  +VSS +  A V +  GG+L   FGR     L +    AG+ + A A + +T++ GR+
Sbjct:   120 QELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRL 179

Query:   203 LXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG-IXXXXXXXXXXXXXXXWWR 261
             +           VP+YI+E+SP  +RG L ++N LFI  G                  WR
Sbjct:   180 VVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWR 239

Query:   262 TMFGLAAIPSILLALGMGLSPESPRWLFQ 290
              M GLAA+P+++   G    PESPRWL Q
Sbjct:   240 YMLGLAAVPAVIQFFGFLFLPESPRWLIQ 268

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 72/213 (33%), Positives = 107/213 (50%)

Query:    78 AQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA 137
             A  S+G ++   P +  +   +  +L     A +G +LFGY  GV++GAL Y+  D  + 
Sbjct:     8 APGSSGYLD-MFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVV 66

Query:   138 -ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT 196
              +++ LQ  IVS  L GA +G+  GG + D +GR +      V  AAGA + A A     
Sbjct:    67 KQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYV 126

Query:   197 MIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXX 256
             +I GR+L            P+YI+E SP+E+RG L S N L I  G              
Sbjct:   127 LISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQV 186

Query:   257 XXWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289
                WR M G++ +P+++  + M   PESPRWLF
Sbjct:   187 PGTWRWMLGVSGVPAVIQFILMLFMPESPRWLF 219

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 74/183 (40%), Positives = 98/183 (53%)

Query:   109 ACLGAILFGYHLGVVNGALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADK 167
             A +G +LFGY+ GV+ GAL Y+ ++ G  +N T LQ  IVS  +AGA VG+  GG   DK
Sbjct:    33 AGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDK 92

Query:   168 FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEI 227
             FGR  +  +  V    GA +   A +   +I+GR+L            PLYISE+SP  I
Sbjct:    93 FGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARI 152

Query:   228 RGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRW 287
             RGAL S N L I  G                 WR M G++AIP+I+    M   PESPRW
Sbjct:   153 RGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLMLTLPESPRW 212

Query:   288 LFQ 290
             L++
Sbjct:   213 LYR 215

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56ZZ7	PLST4_ARATH	No assigned EC number	0.7239	0.9533	0.5238	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-42
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-39
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-30
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-21
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-19
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	4e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-13
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-10
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	9e-10
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	3e-08
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	6e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-07
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-06
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	3e-06
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	8e-05
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-04
PRK10504	471	PRK10504, PRK10504, putative transporter; Provisio	7e-04
COG0477	338	COG0477, ProP, Permeases of the major facilitator	0.001
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	0.001
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.002
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  150 bits (382), Expect = 3e-42
 Identities = 83/194 (42%), Positives = 108/194 (55%), Gaps = 13/194 (6%)

Query: 108 VACLGAILFGYHLGVVNGALEYLAKDL---------GIAENTVLQGWIVSSLLAGATVGS 158
           VA LG  LFGY  GV+   L  +               A +TVL G IVS    G  +GS
Sbjct: 4   VAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGS 63

Query: 159 FTGGSLADKFGRTRTFQLDAVPLAAGAFL--CATAQSVQTMIIGRVLAGIGIGISSAIVP 216
              G L D+FGR ++  +  V    GA L   A  +S   +I+GRV+ G+G+G  S +VP
Sbjct: 64  LFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVP 123

Query: 217 LYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA--GNPLWWRTMFGLAAIPSILL 274
           +YISEI+P ++RGALGS+ QL I  GIL A + GL L    N   WR   GL  +P+ILL
Sbjct: 124 MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILL 183

Query: 275 ALGMGLSPESPRWL 288
            +G+   PESPRWL
Sbjct: 184 LIGLLFLPESPRWL 197

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  143 bits (363), Expect = 2e-39
 Identities = 82/199 (41%), Positives = 113/199 (56%), Gaps = 11/199 (5%)

Query: 108 VACLGAILFGYHLGVVNGALE------YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTG 161
           +A +G ++FGY  GV+ GAL               + ++ L G +VS  L G  +G+   
Sbjct: 32  IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFA 91

Query: 162 GSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGRVLAGIGIGISSAIVPLY 218
           G L+D+FGR ++  + A+    GA L    A A SV+ +I+GRVL GIG+GI+SA+VP+Y
Sbjct: 92  GWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMY 151

Query: 219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLP--LAGNPLWWRTMFGLAAIPSILLAL 276
           +SEI+P  +RGAL S+ QL I  GIL A   G       N L WR   GL  IP+ LL L
Sbjct: 152 LSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211

Query: 277 GMGLSPESPRWLFQVFLHD 295
           G+   PESPRWL      +
Sbjct: 212 GLFFLPESPRWLVGKGRVE 230

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  119 bits (299), Expect = 2e-30
 Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 25/218 (11%)

Query: 96  KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------AKDLGIAENTVLQGWIVSS 149
           + +S  +     VA LG +LFGY   V++G +E L       ++L  +    L G+ V+S
Sbjct: 4   QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVAS 63

Query: 150 LLAGATVGSFTGGSLADKFGRTRT-------FQLDAVPLAAGAFLCATAQS-----VQTM 197
            L G  +G   GG  +++FGR  +       F + A+  A   F   +        V   
Sbjct: 64  ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF 123

Query: 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257
           +I R++ GIG+G++S + P+YI+EI+P  IRG L S NQ  I  G L        +A + 
Sbjct: 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG 183

Query: 258 --LW-----WRTMFGLAAIPSILLALGMGLSPESPRWL 288
              W     WR MF   AIP++L  + +   PE+PR+L
Sbjct: 184 DASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL 221

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 91.2 bits (227), Expect = 5e-21
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 3/173 (1%)

Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
           + +  LG  L G   G+++ AL  LA+DLG++ +    G IVS+   G  +GS   G L+
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
           D+FGR R   L  +  A G+ L A A S+  +++GR L G+G G         I+E  P 
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 226 EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278
           + RG    +      +G L   + G  LA + L WR +F + AI  +LLAL +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAILGLLLALLL 170

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 85.9 bits (213), Expect = 6e-19
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 10/187 (5%)

Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
           + ++ L  ++ GY L  +  A   ++ + G+  + V  G++ S+ L G   G+   G LA
Sbjct: 19  IILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLA 76

Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
           D+ GR R      +  +    LCA A +V  ++I R LAG+G+G     +   +SE +P 
Sbjct: 77  DRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK 136

Query: 226 EIRG-ALGSVNQLFICVGILAALVAG--LPLAGNPLWWRTMFGLAAI-PSILLALGMGLS 281
             RG A+G +   +     +   +AG  +P+ G    WR++F +  I P +LL L M   
Sbjct: 137 RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG----WRSLFYVGGIAPLLLLLLLMRFL 192

Query: 282 PESPRWL 288
           PES  +L
Sbjct: 193 PESIDFL 199

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 72.3 bits (177), Expect = 4e-14
 Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 20/194 (10%)

Query: 117 GYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176
           G  + VV   L    KDL I ++   +G +   +  G  VG+F  G LADK GR +   +
Sbjct: 180 GVEVFVVGFVLPSAEKDLCIPDSG--KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237

Query: 177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVN 235
                   AF  +  Q     +  R+L+G GIG +  IV  Y +E    E RG  L  + 
Sbjct: 238 CLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC 297

Query: 236 QLFICVGILAALVAG--LPLAGNPLW------------WRTMFGLAAIPSILLALGMGLS 281
             ++  GI AA +A   +P  G   W            WR    + A P +     +   
Sbjct: 298 MFWMIGGIYAAAMAWAIIPHYG---WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354

Query: 282 PESPRWLFQVFLHD 295
           PESPR+  +   HD
Sbjct: 355 PESPRFFLENGKHD 368

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 110 CLGAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF 168
            L A L G    ++  AL  YLA+DLGI+   +  G ++++   G  +     G L+D+F
Sbjct: 2   FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLSDRF 59

Query: 169 GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR 228
           GR R   +  +  A G  L   A S+  +++ RVL G+G G         I++  P E R
Sbjct: 60  GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119

Query: 229 GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276
           G    +      +G     + G  LA     WR  F + AI ++L A+
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASL-FGWRAAFLILAILALLAAV 166

Length = 346

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 4/155 (2%)

Query: 136 IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ 195
           + E+        S    G  +GSF  G L+D+FGR +   L  +  A    L A + +  
Sbjct: 122 VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT 181

Query: 196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255
             ++ R+L G+GIG       +  +E  P + R  +G++ Q+F  +G++  L+  +    
Sbjct: 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV--LLPLVAYFI 239

Query: 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
               WR +    ++P+ L  L     PESPRWL  
Sbjct: 240 PD--WRWLQLAVSLPTFLFFLLSWFVPESPRWLIS 272

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181
           V  G L  +A DLG++E     G ++++   G  +G+     L  +  R R         
Sbjct: 31  VPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88

Query: 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFIC 240
                L A A S   +++ R LAG+  G+  +I     + + P   RG AL  V      
Sbjct: 89  IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVF----- 143

Query: 241 VGILAALVAGLPLA---GNPLWWRTMFGLAAIPSILLALGM 278
            G+  A V G+PL    G    WR  F   A+ ++L  L +
Sbjct: 144 TGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLL 184

Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 58.7 bits (142), Expect = 9e-10
 Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 1/149 (0%)

Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199
           TV    ++S+ L     G+   G   D++GR        V  +AG   C  A    TM I
Sbjct: 46  TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFI 105

Query: 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPL 258
            R++ GIG+G        Y+ E  P  +R     +      VG ++AA V  L +     
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165

Query: 259 WWRTMFGLAAIPSILLALGMGLSPESPRW 287
            WR +F ++ +P I         PE+  W
Sbjct: 166 GWRALFFISILPIIFALWLRKNIPEAEDW 194

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181
           +VN A+  +A DLG + + V   W+++S +    +     G LA +FG  R F +     
Sbjct: 20  IVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF 77

Query: 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFIC 240
             G+ LC  A +++ MII RV+ G G G    +    +  I P E RG A+         
Sbjct: 78  TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMA-----IWG 132

Query: 241 VGILAALVAGLPLAG---NPLWWRTMFGLAAIPSI 272
           + +L A   G  L G       WR +F +     I
Sbjct: 133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI 167

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 19/202 (9%)

Query: 95  AKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ-GWIVSSLLAG 153
           +  SS + L  +G+  L A+L G  L     A   +A++ G+    V Q GW  S+ + G
Sbjct: 7   SASSSRLALT-IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLD---VAQMGWAFSAGILG 62

Query: 154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGIS 211
              G+  GG LAD+ GR R   L       G F  ATAQ     ++++ R+L G+G+G  
Sbjct: 63  LLPGALLGGRLADRIGRKRI--LIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLG-- 118

Query: 212 SAIVPLYI---SEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAGNPLWWRTMFGLA 267
              +P  I   SE     +RG   S+    +   G LA+++    LA     WR +F + 
Sbjct: 119 -GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG--VLAAGDAAWRHIFYVG 175

Query: 268 AI-PSILLALGMGLSPESPRWL 288
            + P +L+ L M   PES  + 
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFA 197

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFT 160
           ++   + +A    +L   + G++     YL + LG++      G ++S    G  +G+  
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALL 230

Query: 161 GGSLADKFGRTRTFQLDAVPLAA-GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYI 219
           GG L+D+ GR R   L  + LAA G  L A A S+  +++  +L G G+G +   +    
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290

Query: 220 SEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276
           SE++P E RG    +   F  +G     +    L     +      LAA+  +   L
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 11/152 (7%)

Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188
            L +DLG+  +    G++ S+   G  VG F GG L D+FG  +T  +  V    G F  
Sbjct: 19  MLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIV--IWGVFTG 74

Query: 189 ATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG--IL 244
             A   +  ++ I RVL G         + L ++   P   R    S+      +G  I 
Sbjct: 75  LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIG 134

Query: 245 AALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276
             LV  + +      W+  F +  +  I+  +
Sbjct: 135 GPLVGWILIH---FSWQWAFIIEGVLGIIWGV 163

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 35/141 (24%), Positives = 53/141 (37%)

Query: 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
           G +++    G  + S   G L D+FGR     +          + A + ++  +II R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263
            G G   +       I++I P E RG    +    I +G L     G  LA    W    
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 264 FGLAAIPSILLALGMGLSPES 284
             LA +      L   L PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)

Query: 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG 169
            L  +L    + V NG L Y      +  N  L   ++      A +G+     LA +FG
Sbjct: 228 LLLYLLNALAMAVRNGLLLYYFTY--VLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFG 285

Query: 170 RTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
           + RTF L  +  A G  L       S+   ++  VLAGIG+G+++ +    ++++
Sbjct: 286 KKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADV 340

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 45/222 (20%)

Query: 108 VACLGAILFGYHLGVVNGA---LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSL 164
           +A +G     Y L  ++     L Y+         + +   +  S   G   G    G L
Sbjct: 20  IAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWL 79

Query: 165 ADKFGRTRTFQLDAV-----PLAAGAFLCATAQSVQTMII-GRVLAGIGIG----ISSAI 214
           ADK GR R + ++ +      +A+G    ++ +SV   +   R   G+GIG    +S+ I
Sbjct: 80  ADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAII 139

Query: 215 VPLYISEISPTEIRGAL-GSV--NQLFICVGILA-ALVAGLPLAG--NPL---------- 258
                SE +  + RGA+  +V   Q F   GILA A+VA + LAG  + L          
Sbjct: 140 T----SEFATKKWRGAMMAAVFAMQGF---GILAGAIVALIVLAGFKHSLEAAADEASCT 192

Query: 259 ---------WWRTMFGLAAIPSILLALGMGLSPESPRWLFQV 291
                     WR + G  A+P++L        PE+PR+   V
Sbjct: 193 GSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADV 234

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 148 SSLLAGATVGSFTGG----SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
           +SL++ A +  + GG    ++ D++GR     +  V  + G   C  A    T+ I R++
Sbjct: 58  ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLV 117

Query: 204 AGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFICVGILAALVAGLPLAGNPLW-WR 261
            G+G+         Y+ E  P  +R  A G +   F    ++AA V  L +   P+W WR
Sbjct: 118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV---PVWGWR 174

Query: 262 TMFGLAAIPSILLALGMGLS-PESPRW 287
            +F +  +P I+ AL +  + PE+  W
Sbjct: 175 ALFFIGILP-IIFALWLRKNLPEAEDW 200

Length = 496

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 7/181 (3%)

Query: 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQG-WIVSSLLAGATVGSFTGGSLADK 167
           A LG +  G+   ++   +  +  DLG+   T ++G ++ ++   G   G    G LADK
Sbjct: 23  AWLGYVFDGFDFMLIFYIMYLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADK 79

Query: 168 FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227
           FGR        V  + G  L   A  V  + + R + G+G+    A    Y  E  P  +
Sbjct: 80  FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139

Query: 228 RGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286
           +    +       +G I+AA    +P       WR  F +  +P +L+      +PES  
Sbjct: 140 KSKASAFLVSGFGIGNIIAAYF--MPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKE 197

Query: 287 W 287
           W
Sbjct: 198 W 198

Length = 426

>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 122 VVNGALEYLAKDLGIAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180
           +VN AL  +A+ LG  E+ + +   IVS +L  A +   +G  LAD+ G    F    V 
Sbjct: 28  IVNTALPSMAQSLG--ESPLHMHMVIVSYVLTVAVMLPASGW-LADRVGVRNIFFTAIVL 84

Query: 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226
              G+  CA + ++  +++ RVL G+G  +   +  L + +I P E
Sbjct: 85  FTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE 130

Length = 471

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 5/187 (2%)

Query: 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK 167
              L A+L G  LG+++ AL  L   L ++   +L G ++S+   G  +GS   G L D+
Sbjct: 6   ALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR 65

Query: 168 FGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
           +GR +   +  +    G  L A A    +  ++I R+L G+G G    +    +SE  P 
Sbjct: 66  YGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPE 125

Query: 226 EIRGALGSVNQLFICVG---ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282
                L               L  L+AGL L      WR  F LAA+  +LL + + L  
Sbjct: 126 ATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLLD 185

Query: 283 ESPRWLF 289
                  
Sbjct: 186 LLLAAPR 192

Length = 338

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT--------MIIGRVLAGIG 207
           +G+   G   D+ GR +T  +  + +  G  L     S  T        +++ R++ G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL 251
           +G       LY++E +P   RG  GS  Q+   VG+L A +  L
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL 153

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 5/139 (3%)

Query: 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
           L  +LFG+    +   L    + LG+  + +L G ++        +G    G L+D+ GR
Sbjct: 209 LALLLFGFAFFALLTYLPLYQEVLGL--SALLAGLLLGLAGLLGAIGRLLLGRLSDRLGR 266

Query: 171 TRTFQLD---AVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227
            R   L     +  A G  L +  +S   +++  +L G G G+    +   +S+++P E 
Sbjct: 267 RRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEE 326

Query: 228 RGALGSVNQLFICVGILAA 246
           RG    +      +G    
Sbjct: 327 RGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF 186
             Y  + LG+     +Q  + +S + G  +GS   G L+ +        L A+ LA   F
Sbjct: 256 PAYAKEVLGLDNTFQVQYLLAASAI-GIGIGSLLAGRLSGRHIELGLVPLGALGLALSLF 314

Query: 187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPL--YISEISPTEIRGALGSVNQLFICVGIL 244
           L  TA S+ ++++   L G   G+   IVPL   I   +P +  G + + N     VG+L
Sbjct: 315 LLPTAPSLASVLVLFFLFGFSAGL--FIVPLNALIQFRAPEKELGKVLAANNFLQNVGML 372

Query: 245 AALVAGLPLAG---NPLWWRTMFGLAAIPSILLALGMGLSPES-PRWLFQVFLH 294
             L      +G   +P      + +A +  I     + L P+S  R+L  + +H
Sbjct: 373 LFLALTTLFSGLGLSPA--GLFYLIALVTLIGTLYTLLLLPDSLLRFLLLLLMH 424

Length = 1146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.92
TIGR00891	405	2A0112 putative sialic acid transporter.	99.92
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.91
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.9
PRK12307	426	putative sialic acid transporter; Provisional	99.9
PRK03545	390	putative arabinose transporter; Provisional	99.9
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.9
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.9
PRK11663	434	regulatory protein UhpC; Provisional	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.89
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
PLN00028	476	nitrate transmembrane transporter; Provisional	99.88
PRK09952	438	shikimate transporter; Provisional	99.88
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.88
PRK10091	382	MFS transport protein AraJ; Provisional	99.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.88
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.87
PRK15075	434	citrate-proton symporter; Provisional	99.87
PRK03699	394	putative transporter; Provisional	99.87
KOG0254	513	consensus Predicted transporter (major facilitator	99.87
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.87
TIGR00895	398	2A0115 benzoate transport.	99.87
PRK09705	393	cynX putative cyanate transporter; Provisional	99.87
TIGR00898	505	2A0119 cation transport protein.	99.86
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.86
PRK10504	471	putative transporter; Provisional	99.86
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.86
TIGR00893	399	2A0114 d-galactonate transporter.	99.86
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.86
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.85
TIGR00900	365	2A0121 H+ Antiporter protein.	99.85
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.85
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.85
PRK12382	392	putative transporter; Provisional	99.85
PRK11043	401	putative transporter; Provisional	99.85
PRK05122	399	major facilitator superfamily transporter; Provisi	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.84
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.84
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.83
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.83
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.83
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.83
PRK10054	395	putative transporter; Provisional	99.82
TIGR00805	633	oat sodium-independent organic anion transporter.	99.82
PRK10133	438	L-fucose transporter; Provisional	99.82
KOG0569	485	consensus Permease of the major facilitator superf	99.81
KOG2533	495	consensus Permease of the major facilitator superf	99.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.81
PRK09874	408	drug efflux system protein MdtG; Provisional	99.81
PRK03633	381	putative MFS family transporter protein; Provision	99.81
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.81
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.81
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.8
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.8
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.8
PTZ00207	591	hypothetical protein; Provisional	99.8
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.79
PRK10489	417	enterobactin exporter EntS; Provisional	99.78
KOG2532	466	consensus Permease of the major facilitator superf	99.78
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.78
PRK10642	490	proline/glycine betaine transporter; Provisional	99.78
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.78
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.77
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.76
KOG2615	451	consensus Permease of the major facilitator superf	99.75
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.75
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.75
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.74
PRK15011	393	sugar efflux transporter B; Provisional	99.73
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.73
PRK11010	491	ampG muropeptide transporter; Validated	99.73
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.73
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.72
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.72
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.72
PRK11902	402	ampG muropeptide transporter; Reviewed	99.71
PRK15011	393	sugar efflux transporter B; Provisional	99.71
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.69
PRK09528	420	lacY galactoside permease; Reviewed	99.68
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.68
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.68
TIGR00901	356	2A0125 AmpG-related permease.	99.68
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.67
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.67
PRK09952	438	shikimate transporter; Provisional	99.66
PRK05122	399	major facilitator superfamily transporter; Provisi	99.66
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.66
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.66
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.66
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.66
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.66
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.63
PRK09528	420	lacY galactoside permease; Reviewed	99.62
TIGR00893	399	2A0114 d-galactonate transporter.	99.62
PRK03699	394	putative transporter; Provisional	99.62
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.62
PRK12382	392	putative transporter; Provisional	99.62
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.61
PRK03545	390	putative arabinose transporter; Provisional	99.61
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.6
PRK10489	417	enterobactin exporter EntS; Provisional	99.6
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.59
PRK09705	393	cynX putative cyanate transporter; Provisional	99.59
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.59
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.58
PRK09874	408	drug efflux system protein MdtG; Provisional	99.57
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.57
TIGR00891	405	2A0112 putative sialic acid transporter.	99.57
PRK03633	381	putative MFS family transporter protein; Provision	99.56
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.56
PRK03893	496	putative sialic acid transporter; Provisional	99.56
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.56
PRK11663	434	regulatory protein UhpC; Provisional	99.55
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.55
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.54
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.54
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.54
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.53
PRK12307	426	putative sialic acid transporter; Provisional	99.52
PRK10504	471	putative transporter; Provisional	99.51
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.51
PRK11010	491	ampG muropeptide transporter; Validated	99.5
PRK15075	434	citrate-proton symporter; Provisional	99.5
TIGR00898	505	2A0119 cation transport protein.	99.5
TIGR00895	398	2A0115 benzoate transport.	99.5
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.48
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.47
KOG0569	485	consensus Permease of the major facilitator superf	99.46
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.46
PLN00028	476	nitrate transmembrane transporter; Provisional	99.46
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.46
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.45
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.45
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.45
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.44
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.44
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.44
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.43
TIGR00900	365	2A0121 H+ Antiporter protein.	99.43
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.43
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.43
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.42
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.42
PRK10091	382	MFS transport protein AraJ; Provisional	99.41
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.41
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.41
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.39
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.39
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.38
PRK10054	395	putative transporter; Provisional	99.38
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.37
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.37
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.36
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.36
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.35
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.33
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.33
PRK11902	402	ampG muropeptide transporter; Reviewed	99.33
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.32
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.32
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.29
PRK10133	438	L-fucose transporter; Provisional	99.28
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.28
PRK09669	444	putative symporter YagG; Provisional	99.27
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.26
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.26
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.23
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.22
KOG2563	480	consensus Permease of the major facilitator superf	99.22
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.22
PRK09848	448	glucuronide transporter; Provisional	99.22
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.21
PRK10429	473	melibiose:sodium symporter; Provisional	99.21
TIGR00901	356	2A0125 AmpG-related permease.	99.2
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.2
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.19
PF13347	428	MFS_2: MFS/sugar transport protein	99.17
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.17
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.17
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.16
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.16
PF13347	428	MFS_2: MFS/sugar transport protein	99.16
COG0477	338	ProP Permeases of the major facilitator superfamil	99.14
PRK11043	401	putative transporter; Provisional	99.13
PRK10429	473	melibiose:sodium symporter; Provisional	99.12
PRK09669	444	putative symporter YagG; Provisional	99.11
KOG2532	466	consensus Permease of the major facilitator superf	99.07
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.07
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.04
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.04
KOG3626	735	consensus Organic anion transporter [Secondary met	99.03
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.01
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.96
KOG3762	618	consensus Predicted transporter [General function	98.96
PRK11462	460	putative transporter; Provisional	98.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.95
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.93
KOG0254	513	consensus Predicted transporter (major facilitator	98.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.9
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.88
PRK09848	448	glucuronide transporter; Provisional	98.87
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.86
PRK11462	460	putative transporter; Provisional	98.84
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.83
COG2211	467	MelB Na+/melibiose symporter and related transport	98.83
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.8
COG2211	467	MelB Na+/melibiose symporter and related transport	98.8
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.76
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.75
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.74
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.73
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.71
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.71
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.65
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.63
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.62
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.6
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.56
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.56
KOG2533	495	consensus Permease of the major facilitator superf	98.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.54
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.45
PF12832	77	MFS_1_like: MFS_1 like family	98.42
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.39
KOG2615	451	consensus Permease of the major facilitator superf	98.29
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.29
PTZ00207	591	hypothetical protein; Provisional	98.22
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.21
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.19
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.06
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.05
KOG0637	498	consensus Sucrose transporter and related proteins	98.05
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.04
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.93
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.91
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.79
PRK03612	521	spermidine synthase; Provisional	97.79
KOG2563	480	consensus Permease of the major facilitator superf	97.61
TIGR00805	633	oat sodium-independent organic anion transporter.	97.39
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.37
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.36
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.32
COG3202	509	ATP/ADP translocase [Energy production and convers	97.29
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.28
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.11
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.02
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.89
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.89
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.5
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.44
KOG3762	618	consensus Predicted transporter [General function	96.43
KOG3810	433	consensus Micronutrient transporters (folate trans	96.23
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.18
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.95
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.9
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.76
KOG3626	735	consensus Organic anion transporter [Secondary met	95.29
KOG3097	390	consensus Predicted membrane protein [Function unk	95.28
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.21
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.79
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.55
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.42
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.33
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	93.52
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	93.49
KOG3880	409	consensus Predicted small molecule transporter inv	93.29
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	92.53
KOG0637	498	consensus Sucrose transporter and related proteins	91.96
KOG3810	433	consensus Micronutrient transporters (folate trans	91.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	89.26
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	87.26
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	86.83
PRK10263	1355	DNA translocase FtsK; Provisional	86.51
KOG3880	409	consensus Predicted small molecule transporter inv	85.55
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	85.02
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	84.44
COG4262	508	Predicted spermidine synthase with an N-terminal m	83.82
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	83.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	80.11

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=8.7e-27  Score=219.20  Aligned_cols=196  Identities=27%  Similarity=0.317  Sum_probs=174.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (300)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~  178 (300)
                      .+..|.++++++++.+..+++...++..+|.+.+++|++..+.  +++.+++.++.+++.+++|+++||+|||+++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l  239 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL  239 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            4556777778888888888888888999999999999998887  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC--
Q 022246          179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--  256 (300)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--  256 (300)
                      ++++++.++++++++++.++++|++.|++.++..+....++.|++|++.|+..++++.++..+|.++++.+++.+...  
T Consensus       240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998876554321  


Q ss_pred             ----------CCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCccc
Q 022246          257 ----------PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDY  296 (300)
Q Consensus       257 ----------~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~  296 (300)
                                ..+||+.|++.++..++.+++.+++||+|+|+..+++.++
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~e  369 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDE  369 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHH
Confidence                      1469999999888888777788889999999887666543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=1.3e-24  Score=194.80  Aligned_cols=184  Identities=16%  Similarity=0.138  Sum_probs=165.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH
Q 022246          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (300)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~  180 (300)
                      .+|.++..+++.++.++++...++...|.+.+++|++..+.  +++.+++.+++++++++.|+++||+|||+++..+.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            34667777788888899999999999999999999999998  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC-----
Q 022246          181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-----  255 (300)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----  255 (300)
                      ++++.+++++++|++.+++.|++.|++.++..+....++.|++|+++|+++++++..+..+|.++++++++.+..     
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887753     


Q ss_pred             CCCchHHHHHHhHHHHHHHH-HHhhcCCCChh
Q 022246          256 NPLWWRTMFGLAAIPSILLA-LGMGLSPESPR  286 (300)
Q Consensus       256 ~~~~w~~~f~~~~~~~~~~~-~~~~~~pe~~~  286 (300)
                      ...|||+.|++.+++.++.. +.++++||+|+
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            13689999999888876554 45566788763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.92  E-value=1.1e-23  Score=192.53  Aligned_cols=192  Identities=35%  Similarity=0.594  Sum_probs=163.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch
Q 022246          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL--------GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT  171 (300)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr  171 (300)
                      +....++.++.++.+..+++...++...+.+++++        +.+..+.  +++.+++.++.+++++++|+++||+|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr   85 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRR   85 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            33455667777888999999999999999999988        7777777  9999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHH
Q 022246          172 RTFQLDAVPLAAGAFLCATA------------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFI  239 (300)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  239 (300)
                      ++++.+.++++++.++++++            ..+..+++.|+++|++.|+..+...++++|++|+++|++++++...+.
T Consensus        86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~  165 (479)
T PRK10077         86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI  165 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence            99999999998888877653            235678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcC
Q 022246          240 CVGILAALVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFL  293 (300)
Q Consensus       240 ~~g~~~~~~~~~~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~  293 (300)
                      .+|.++++++++.+..       ...+||+.|++.++..++..+..+++||+|+++..+++
T Consensus       166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~  226 (479)
T PRK10077        166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK  226 (479)
T ss_pred             HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC
Confidence            9999998887765431       23689999999888887777777788999887644433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.92  E-value=2.2e-23  Score=185.97  Aligned_cols=188  Identities=23%  Similarity=0.304  Sum_probs=167.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (300)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~  178 (300)
                      .+..|..+..+++..+..+++....+...+.+++++|++..+.  +++.+++.++..++.++.|+++||+|||++++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3455677788888889999999999999999999999999988  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-
Q 022246          179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-  257 (300)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-  257 (300)
                      ++.+++.++++++++++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|.++++.+++.+.+.. 
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998876541 


Q ss_pred             CchHHHHHHhHHHHHHHHHHhhcCCCChhHH
Q 022246          258 LWWRTMFGLAAIPSILLALGMGLSPESPRWL  288 (300)
Q Consensus       258 ~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~  288 (300)
                      .+||+.|++.++..++..+....+||++++.
T Consensus       165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  195 (405)
T TIGR00891       165 DGWRALFFISILPIIFALWLRKNIPEAEDWK  195 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            3599999987776666666666778876543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.9e-25  Score=193.02  Aligned_cols=186  Identities=20%  Similarity=0.286  Sum_probs=171.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (300)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~  178 (300)
                      .+..++.+.+.++...+++++...+....+.+++.||++++..  |++.+++.+++.++.|++|+|+|||+||+++.+|.
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~  105 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGI  105 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHH
Confidence            3444667788889999999999999999999999999998888  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 022246          179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL  258 (300)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  258 (300)
                      .+|.++.++++++..+|+++++|.+.|+|.+...++.+.+++|.||..+|++++++++++..+|..+|.+++..+.....
T Consensus       106 ~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  106 FIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987756


Q ss_pred             chHHHHHHhHHHHHHHHHHh-hcCCCChh
Q 022246          259 WWRTMFGLAAIPSILLALGM-GLSPESPR  286 (300)
Q Consensus       259 ~w~~~f~~~~~~~~~~~~~~-~~~pe~~~  286 (300)
                      .|||.|++.+++.++++++. ++++|+++
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            69999999999998876654 55666554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=2.1e-23  Score=191.38  Aligned_cols=181  Identities=17%  Similarity=0.157  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (300)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~  181 (300)
                      +|..+..+++..++..++.++++..+|.+.+++|.+.++.  +|+.+.+.++.+++.+++|+++||+|||++++.+.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4667888889999999999999999999999999998888  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC-CcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246          182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (300)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w  260 (300)
                      +++.+++++++|++.++++|+++|++.++..+.....+.+.+ |+++|+++++++.....+|..+||.+++.+.+. .+|
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~-~gw  160 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH-FYW  160 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCh
Confidence            999999999999999999999999999998888888887776 678999999999999999999999999999876 899


Q ss_pred             HHHHHHhHHHHHHHHH-HhhcCCCCh
Q 022246          261 RTMFGLAAIPSILLAL-GMGLSPESP  285 (300)
Q Consensus       261 ~~~f~~~~~~~~~~~~-~~~~~pe~~  285 (300)
                      ||.|++...+.++.++ ..+++|+.+
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999998877766544 445567654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.91  E-value=4e-23  Score=189.31  Aligned_cols=186  Identities=19%  Similarity=0.230  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhh---HHHH-HHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246          104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGW-IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (300)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~-~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~  179 (300)
                      ..+....++.++.+++..++++..+.+.++++.+.+..   ...+ ..++..++..+|++++|+++||+|||++++++.+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   95 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV   95 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            35566678889999999999999999999997543221   1111 2477788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhh
Q 022246          180 PLAAGAFLCATAQSVQT--------MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL  251 (300)
Q Consensus       180 ~~~~~~~~~~~~~~~~~--------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  251 (300)
                      +++++.+++++++|+..        ++++|+++|++.|+.++....+++|++|+++||++.++...+..+|..+++.+..
T Consensus        96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~  175 (490)
T PRK10642         96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV  175 (490)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999875        7899999999999999999999999999999999999999888888877776554


Q ss_pred             hccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHH
Q 022246          252 PLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF  289 (300)
Q Consensus       252 ~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~  289 (300)
                      .+..       ...|||+.|++.+++.++..++...+||+|++..
T Consensus       176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~  220 (490)
T PRK10642        176 LISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQ  220 (490)
T ss_pred             HHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHH
Confidence            3321       1379999999987766655556667899987654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.91  E-value=3.8e-23  Score=190.09  Aligned_cols=194  Identities=22%  Similarity=0.307  Sum_probs=165.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-----CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHH
Q 022246           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-----GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT  173 (300)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~  173 (300)
                      .+..+.++.++.++.+.++++...++...+.+..++     +.+..+.  +++.+.+.++..++.+++|+++||+|||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~   88 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVS--AAVNGSASIGTLAGQLFFGWLADKLGRKRV   88 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            344566777888899999999999999888887753     2233344  789999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHhhh------HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246          174 FQLDAVPLAAGAFLCATAQS------VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (300)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (300)
                      +..+.+++.++.++++++++      ++.++++|++.|++.|+.++....+++|++|+++|++++++......+|.++++
T Consensus        89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887        89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888765      788999999999999999999999999999999999999999999999999888


Q ss_pred             HhhhhccC----------------------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCc
Q 022246          248 VAGLPLAG----------------------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLH  294 (300)
Q Consensus       248 ~~~~~~~~----------------------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~  294 (300)
                      .++..+..                      ...+||+.|.+.++..++.++..+++||+|+|+..+++.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~  237 (502)
T TIGR00887       169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD  237 (502)
T ss_pred             HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcc
Confidence            88765421                      114799999988888887777888899999998765554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=2.4e-23  Score=180.26  Aligned_cols=177  Identities=23%  Similarity=0.270  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      +..++.+.++.|..+....+....+|.+.+|+|+|..+.  |+..++|.++..++.++...++||+.||++++..+.++.
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi   89 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI   89 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            555666677788888888899999999999999999999  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                      ++.+++++++||+.+++.|++.|+..|.++++...+..++.|+++|+++++++.++..++.++|..++.++.+. .|||+
T Consensus        90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-~GWR~  168 (394)
T COG2814          90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-FGWRA  168 (394)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-hhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887 99999


Q ss_pred             HHHHhHHHHHHHHH-HhhcCC
Q 022246          263 MFGLAAIPSILLAL-GMGLSP  282 (300)
Q Consensus       263 ~f~~~~~~~~~~~~-~~~~~p  282 (300)
                      .|++.++++++..+ .+..+|
T Consensus       169 ~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         169 TFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC
Confidence            99999999987766 555678

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.91  E-value=1.9e-22  Score=180.62  Aligned_cols=186  Identities=26%  Similarity=0.390  Sum_probs=167.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (300)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~  179 (300)
                      ++.|..++++++..+..+++....+...|.+.+++|.++.+.  +++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            466778888888899999999999999999999999999888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 022246          180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW  259 (300)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  259 (300)
                      +.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++++++.+.+. .+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~  167 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD-AA  167 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998877665 78


Q ss_pred             hHHHHHHhHHHHHHHHH-HhhcCCCChhHH
Q 022246          260 WRTMFGLAAIPSILLAL-GMGLSPESPRWL  288 (300)
Q Consensus       260 w~~~f~~~~~~~~~~~~-~~~~~pe~~~~~  288 (300)
                      ||+.|++.+++.++..+ ..+++||++++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  197 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFA  197 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            99999998876655544 445678887654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.90  E-value=2e-22  Score=181.88  Aligned_cols=188  Identities=18%  Similarity=0.226  Sum_probs=150.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhC---CChhhh-HHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH
Q 022246          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG---IAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL  176 (300)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~-~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~  176 (300)
                      +++..+...+++.++.+++...++...|.+.++++   .+..+. ..+...+...++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            34556666677888999999999999999999985   444332 11223344455556999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHH
Q 022246          177 DAVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALV  248 (300)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  248 (300)
                      +.++++++.+++++++++.        .++++|+++|++.|+.++....++.|++|+++|+++.++...+...|.+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988764        58899999999999999999999999999999999999988888888887776


Q ss_pred             hhhhccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHH
Q 022246          249 AGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWL  288 (300)
Q Consensus       249 ~~~~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~  288 (300)
                      +...+..       ...|||+.|++.+++.++..++...+||++++.
T Consensus       179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~  225 (432)
T PRK10406        179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE  225 (432)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence            6544321       137899999998887776665656678877643

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.90  E-value=2.5e-22  Score=180.88  Aligned_cols=184  Identities=22%  Similarity=0.323  Sum_probs=160.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH
Q 022246          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (300)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~  180 (300)
                      ..+..+..+++..+..+++.....+..+.+.+++|+++.+.  ++..+++.++..++++++|+++||+|||++++.+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            33455667777888888888888999999999999999888  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246          181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (300)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w  260 (300)
                      .+++.++++++++++.++++|++.|++.+..++....++.|++|+++|+++.++...+..+|.++++.+.+.+.+. .+|
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-~~w  171 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-YGW  171 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-CCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988887765 799


Q ss_pred             HHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246          261 RTMFGLAAIPSILLALGMGLSPESPRW  287 (300)
Q Consensus       261 ~~~f~~~~~~~~~~~~~~~~~pe~~~~  287 (300)
                      |+.|++.++..++...+....||++++
T Consensus       172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~  198 (426)
T PRK12307        172 RAAFFVGLLPVLLVIYIRARAPESKEW  198 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCChHH
Confidence            999998655444333333345776654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.90  E-value=1.1e-22  Score=181.27  Aligned_cols=177  Identities=20%  Similarity=0.170  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA  185 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~  185 (300)
                      ++.+.+..+..........+..|.+.+++|.+..+.  ++..+.+.+++.++++++|+++||+|||+++..+.++++++.
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   88 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASH   88 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            333333334433333445557899999999999998  999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246          186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG  265 (300)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~  265 (300)
                      +++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++.+.+. .|||+.|+
T Consensus        89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-~gw~~~f~  167 (390)
T PRK03545         89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-LGWRTTFL  167 (390)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hcHHHHHH
Confidence            99999999999999999999999988899999999999999999999999999999999999999988765 79999999


Q ss_pred             HhHHHHHHHHHH-hhcCCCCh
Q 022246          266 LAAIPSILLALG-MGLSPESP  285 (300)
Q Consensus       266 ~~~~~~~~~~~~-~~~~pe~~  285 (300)
                      +.+++.++..+. ..++||.+
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        168 AIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCCCC
Confidence            998887666543 34456543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.3e-23  Score=180.01  Aligned_cols=187  Identities=20%  Similarity=0.144  Sum_probs=172.2

Q ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH
Q 022246           97 KSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL  176 (300)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~  176 (300)
                      ..++.++.++..+++++..+++....++.+.|++.++.++|.++.  |++.+.+.+.+.++.++.|.++||.+.|+.+..
T Consensus        22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            445667888999999999999999999999999999999999999  999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhh--hhcc
Q 022246          177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LPLA  254 (300)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~  254 (300)
                      ++++.++..++++++++.+.+.++.++.|+++|...|.+...++.+|+++|||+..++++.+.++|+.+.|++.  +.+.
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888888  7776


Q ss_pred             CCCCchHHHHHHhHHHHHHHHHH-hhcCCCChh
Q 022246          255 GNPLWWRTMFGLAAIPSILLALG-MGLSPESPR  286 (300)
Q Consensus       255 ~~~~~w~~~f~~~~~~~~~~~~~-~~~~pe~~~  286 (300)
                      .+ .+||..|++.++++++..++ ++.++++|+
T Consensus       180 ~~-~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         180 FH-GGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             hc-cchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            65 69999999999999776664 455677764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.90  E-value=1e-22  Score=185.21  Aligned_cols=188  Identities=44%  Similarity=0.727  Sum_probs=159.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCC--------hhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc
Q 022246           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA--------ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR  170 (300)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr  170 (300)
                      .++.+....++.+..+...++...+....+.+..+++.+        ..+.  +++.+++.++.+++++++|+++||+||
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~l~d~~gr  100 (481)
T TIGR00879        23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW--GLVVSIFLVGGFIGALFAGWLSDRFGR  100 (481)
T ss_pred             cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH--HHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence            344455555666677777777888888888888888887        5566  999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246          171 TRTFQLDAVPLAAGAFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (300)
Q Consensus       171 r~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (300)
                      |++++.+.++++++.+++.+.   .+++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++
T Consensus       101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  180 (481)
T TIGR00879       101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY  180 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999998888554   34568999999999999999999999999999999999999999999999999999


Q ss_pred             Hhh---hhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHH
Q 022246          248 VAG---LPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF  289 (300)
Q Consensus       248 ~~~---~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~  289 (300)
                      +++   ...... .+||+.|++.++..++.++..+++||+|++..
T Consensus       181 ~~~~~~~~~~~~-~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~  224 (481)
T TIGR00879       181 GFGSGKVSLNNT-LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV  224 (481)
T ss_pred             HHHHHhhcCCCC-ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            998   555444 79999999977777777677778899876543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.90  E-value=4.7e-22  Score=177.37  Aligned_cols=180  Identities=22%  Similarity=0.179  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      |..+..+.+..+............+|.+.+++|.++.+.  ++..+++.++..+++++.|+++||+|||++++.+.++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~   96 (394)
T PRK10213         19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLT   96 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence            444444444444444444454557788999999999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                      ++.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+
T Consensus        97 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-~gw~~  175 (394)
T PRK10213         97 LSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-IGWRN  175 (394)
T ss_pred             HHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876 79999


Q ss_pred             HHHHhHHHHHHHHHHh-hcCCCCh
Q 022246          263 MFGLAAIPSILLALGM-GLSPESP  285 (300)
Q Consensus       263 ~f~~~~~~~~~~~~~~-~~~pe~~  285 (300)
                      .|++.+++.+++.+.. ..+||++
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC
Confidence            9999887776655433 3467754

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.90  E-value=4.1e-22  Score=178.77  Aligned_cols=179  Identities=17%  Similarity=0.220  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (300)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~  184 (300)
                      ......+..+...+....+.+.+|.+.+++|.+....  ++..+++.++++++++++|+++||+|||++++.+.++++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~   94 (413)
T PRK15403         17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA   94 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence            3344455566666777788889999999999999888  89999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (300)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f  264 (300)
                      .++++++++++.++++|+++|++.+...+....++.|.+|+++|+++++++.....+|..++|++++.+.+. .+||+.|
T Consensus        95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-~gw~~~f  173 (413)
T PRK15403         95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-VHWKVLF  173 (413)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHH
Confidence            999999999999999999999998877777788899999999999999999999999999999999988765 7999999


Q ss_pred             HHhHHHHHHHHHH-hhcCCCChh
Q 022246          265 GLAAIPSILLALG-MGLSPESPR  286 (300)
Q Consensus       265 ~~~~~~~~~~~~~-~~~~pe~~~  286 (300)
                      ++.+++.++..+. ++++||+++
T Consensus       174 ~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        174 AIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcc
Confidence            9998887776554 455788653

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.90  E-value=3.1e-22  Score=180.82  Aligned_cols=181  Identities=17%  Similarity=0.169  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      +.++...++..+..+++...++...|.+.+++|++..+.  +++.+.+.+++.+++++.|+++||+|||+++.++.++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         22 RHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            345555666667777777777888999999999999888  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                      ++.++++++++++.+++.|++.|++.|..++....++.|++|+++|++++++++.+..+|.++++++++.+.+. .+||+
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~  178 (434)
T PRK11663        100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-YGWRY  178 (434)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999988766 78999


Q ss_pred             HHHHhHHHHHHHH-HHhhcCCCChh
Q 022246          263 MFGLAAIPSILLA-LGMGLSPESPR  286 (300)
Q Consensus       263 ~f~~~~~~~~~~~-~~~~~~pe~~~  286 (300)
                      .|++.+++.++.. +..+++||+|+
T Consensus       179 ~f~~~~i~~~~~~~~~~~~~~~~p~  203 (434)
T PRK11663        179 GMMIAGIIAIVVGLFLCWRLRDKPQ  203 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHh
Confidence            9999887765543 34455677664

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=1.8e-21  Score=178.73  Aligned_cols=184  Identities=20%  Similarity=0.333  Sum_probs=163.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH
Q 022246          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (300)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~  180 (300)
                      ..+..+..+++..+...++.....+..|.+.+++|++..+.  +++.+.+.+++.++.++.|+++||+|||++++.+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            44566777778888888888888889999999999999888  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246          181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (300)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w  260 (300)
                      .+++.+++++.++++.+++.|++.|++.++.++....++.|.+|+++|++++++...+..+|..+++.+++.+.+. .+|
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w  173 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV-WGW  173 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988776 899


Q ss_pred             HHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246          261 RTMFGLAAIPSILLALGMGLSPESPRW  287 (300)
Q Consensus       261 ~~~f~~~~~~~~~~~~~~~~~pe~~~~  287 (300)
                      |+.|++.++..++.++....+||++++
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            999988655544444444557776554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.89  E-value=3.2e-22  Score=176.45  Aligned_cols=165  Identities=16%  Similarity=0.091  Sum_probs=138.2

Q ss_pred             HHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246          119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMI  198 (300)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (300)
                      ....+++..|.+.+++|++..+.  +++.+.+.+++.+++++.|+++||+|||++++.+.+....+.+.....++++.++
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL   83 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34466789999999999999988  9999999999999999999999999999987766555544433333347999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-H
Q 022246          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-G  277 (300)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~  277 (300)
                      ++|++.|++.+. .......++|++|+++|++++++...+..+|.++++++++.+.+. .|||+.|++.++++++..+ .
T Consensus        84 ~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-~gWr~~f~~~~~l~~~~~~~~  161 (368)
T TIGR00903        84 ACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-GGLQLLIIPIAAVAAAGIILV  161 (368)
T ss_pred             HHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHH
Confidence            999999999886 556666779999999999999999999999999999999998875 8999999998887766544 5


Q ss_pred             hhcCCCChhH
Q 022246          278 MGLSPESPRW  287 (300)
Q Consensus       278 ~~~~pe~~~~  287 (300)
                      ++++||+|++
T Consensus       162 ~~~lp~~p~~  171 (368)
T TIGR00903       162 LAALPALPFQ  171 (368)
T ss_pred             HHHcCCCCCC
Confidence            5668987654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=2.1e-22  Score=183.55  Aligned_cols=184  Identities=16%  Similarity=0.078  Sum_probs=156.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (300)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~  179 (300)
                      +..+.++.++++.++..+.+...++...|.+.+++|++..+.  |++.+.+.++++++++++|+++||+|||+++..+.+
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            345667777788888888888889999999999999999988  999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHH-----hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          180 PLAAGAFLCAT-----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       180 ~~~~~~~~~~~-----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      ++++..++.+.     +++++.++++|++.|++.+...+....+++|++|+++||+++|++..+..+|.++++++...+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            88887776655     5899999999999999999999999999999999999999999999999999999988876554


Q ss_pred             CC--CCchHHHHHHhHHHHHHHHHH-hhcCCCCh
Q 022246          255 GN--PLWWRTMFGLAAIPSILLALG-MGLSPESP  285 (300)
Q Consensus       255 ~~--~~~w~~~f~~~~~~~~~~~~~-~~~~pe~~  285 (300)
                      ..  ..+||..|.+.+++.++..+. +++.++.|
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p  216 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSP  216 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            32  136999998888777665443 34445554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.88  E-value=6e-21  Score=174.22  Aligned_cols=175  Identities=12%  Similarity=0.117  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (300)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~  184 (300)
                      .+...+...+...+......+..|.+.+++|++.++.  +++.+.+.+++.++++++|+++||+|||+++..+.++++++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~  114 (476)
T PLN00028         37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA  114 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            3333344444445555566778899999999999888  88999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc----C----C
Q 022246          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA----G----N  256 (300)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~----~  256 (300)
                      .++++++++++.++++|++.|++.+.. .....+++|++|+++||+++++.+....+|..+++.+.+.+.    .    .
T Consensus       115 ~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  193 (476)
T PLN00028        115 VFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS  193 (476)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999988764 445668899999999999999988777777766655554332    1    1


Q ss_pred             CCchHHHHHHhHHHHHHHHHHhhcCC
Q 022246          257 PLWWRTMFGLAAIPSILLALGMGLSP  282 (300)
Q Consensus       257 ~~~w~~~f~~~~~~~~~~~~~~~~~p  282 (300)
                      ..|||+.|++.+++.++..+..++++
T Consensus       194 ~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        194 FTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            25899999999988877665554443

>PRK09952 shikimate transporter; Provisional

Probab=99.88  E-value=5.9e-21  Score=172.62  Aligned_cols=185  Identities=16%  Similarity=0.141  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHh--CCChhhhHHHHHH-----HHHHHHHHHHHhhhhhhccccCchHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALE-YLAKDL--GIAENTVLQGWIV-----SSLLAGATVGSFTGGSLADKFGRTRTF  174 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~s~~~~~~~~~~-----~~~~i~~~i~~~~~g~lsd~~Grr~~~  174 (300)
                      +..+...++..+.++++...+....+ .+.+++  +.++..   ++..     ++..++..+++++.|+++||+|||+++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            34666777788889999998887776 455555  666553   4433     344566788999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHH
Q 022246          175 QLDAVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA  246 (300)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  246 (300)
                      +.+.++++++.+++++++++.        .++++|+++|++.|+.++....++.|++|+++|++..+....+..+|.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        588899999999999999999999999999999999999999999998888


Q ss_pred             HHhhhhccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHh
Q 022246          247 LVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ  290 (300)
Q Consensus       247 ~~~~~~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~  290 (300)
                      ..+...+..       ...+||+.|++.+++.++...+....||++++...
T Consensus       178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~  228 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQ  228 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence            766655431       13789999999887765554455567898876543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.88  E-value=9.2e-22  Score=180.04  Aligned_cols=178  Identities=26%  Similarity=0.375  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (300)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~  184 (300)
                      ++..+++..+...++....+...|.+.+++|.+..+.  +++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3456667778888888899999999999999998888  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (300)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f  264 (300)
                      .++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+. .+||+.|
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~~f  159 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-YHWRWIF  159 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-cCceehh
Confidence            999999999999999999999999999999999999999999999999999999999999999999998876 8999999


Q ss_pred             HHhHHHHHHHHHH-hhcCCCCh
Q 022246          265 GLAAIPSILLALG-MGLSPESP  285 (300)
Q Consensus       265 ~~~~~~~~~~~~~-~~~~pe~~  285 (300)
                      ++.+++.++..+. .+++||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       160 LINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             hhhhHHHHHHHHHHHHHcCCcc
Confidence            9988877665543 34456543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.88  E-value=3.6e-21  Score=171.08  Aligned_cols=176  Identities=20%  Similarity=0.201  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~  186 (300)
                      ....+..+...+......+.+|.+.+++|.+..+.  ++..+.+.+++.++++++|+++||+|||+++..+.++.+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   83 (382)
T PRK10091          6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA   83 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            34445555666666677788999999999998888  9999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHH
Q 022246          187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL  266 (300)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~  266 (300)
                      +++++++++.+++.|++.|++.+...+....++.|++++++|+++++++..+..+|..++|.+++.+.+. .+||+.|++
T Consensus        84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gwr~~f~~  162 (382)
T PRK10091         84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-FSWRYTFLL  162 (382)
T ss_pred             HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-ccHHHHHHH
Confidence            9999999999999999999999988888888999999999999999999999999999999999888765 789999999


Q ss_pred             hHHHHHHHHH-HhhcCCCCh
Q 022246          267 AAIPSILLAL-GMGLSPESP  285 (300)
Q Consensus       267 ~~~~~~~~~~-~~~~~pe~~  285 (300)
                      .+++.++..+ ..+++||.+
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCC
Confidence            9887766554 344577753

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.88  E-value=2.1e-21  Score=169.96  Aligned_cols=172  Identities=30%  Similarity=0.452  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH
Q 022246          110 CLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC  188 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~  188 (300)
                      ++..++..+......+..+ ++.+++|.+..+.  +++.+++.++..++.+++|+++||+|||++++.+.++.+++.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            3445555666667777888 8999999999998  999999999999999999999999999999999999999996666


Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246          189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (300)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~  268 (300)
                      .++++.+.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++.+
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~~~~~~~~~~~  158 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-FGWRWAFLISA  158 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-CHHCCHHHHHH
T ss_pred             hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-ccccccccccc
Confidence            66688889999999999999999999999999999999999999999999999999999999999855 88999999999


Q ss_pred             HHHHHHHHH-hhcCCCC
Q 022246          269 IPSILLALG-MGLSPES  284 (300)
Q Consensus       269 ~~~~~~~~~-~~~~pe~  284 (300)
                      ++.++..++ .++++++
T Consensus       159 ~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHHHHHHCCC---
T ss_pred             chhhhhhhhHhhhhhhc
Confidence            998877664 3444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.87  E-value=3.7e-21  Score=172.32  Aligned_cols=185  Identities=21%  Similarity=0.182  Sum_probs=162.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (300)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~  178 (300)
                      +++.+.....+.+..+...+....+.+..+.+.+++|.+..+.  ++..+.+.+++.++.++.|+++||+|||+++..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   85 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV   85 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            4566777777777888777778888888899999999998888  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 022246          179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL  258 (300)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  258 (300)
                      ++.+++.++++++++++.+++.|++.|++.+...+....++.|.+|+++|+++.++......+|..++|.+++.+.+. .
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~  164 (406)
T PRK15402         86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV-L  164 (406)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence            999999999999999999999999999999888888999999999999999999998888888999999999888765 7


Q ss_pred             chHHHHHHhHHHHHHHHHH-hhcCCCChh
Q 022246          259 WWRTMFGLAAIPSILLALG-MGLSPESPR  286 (300)
Q Consensus       259 ~w~~~f~~~~~~~~~~~~~-~~~~pe~~~  286 (300)
                      +||+.|++.+++.++..+. ++..||+++
T Consensus       165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        165 PWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            8999999988887666553 445677643

>PRK15075 citrate-proton symporter; Provisional

Probab=99.87  E-value=1e-20  Score=170.93  Aligned_cols=184  Identities=19%  Similarity=0.232  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHH-----HHHHHHHHhhhhhhccccCchHHHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSL-----LAGATVGSFTGGSLADKFGRTRTFQLD  177 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-----~i~~~i~~~~~g~lsd~~Grr~~~~~~  177 (300)
                      +.....++++.++.+++...++...|.+.++++.++.+.. .+..+..     .++..+++++.|+++||+|||++++.+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            3457777889999999999999999999999998776641 2222222     223357889999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHh
Q 022246          178 AVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA  249 (300)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  249 (300)
                      .++++++.++++++++++        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999877        468899999999999888889999999999999999999988888887777777


Q ss_pred             hhhccC-------CCCchHHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246          250 GLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRW  287 (300)
Q Consensus       250 ~~~~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~  287 (300)
                      ++.+..       ...|||+.|++.++..++..+.....||++++
T Consensus       173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~  217 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEF  217 (434)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            766521       23789999998655443333333446776543

>PRK03699 putative transporter; Provisional

Probab=99.87  E-value=1.1e-20  Score=168.50  Aligned_cols=176  Identities=13%  Similarity=0.133  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      +++...+++..+..+......+...|.+.+++|++..+.  +++.+.+.+++.++.+++|+++||+|||++++.+.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            345555666777777777778888999999999999888  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                      ++.++++++++++.++++|++.|++.+...+....++.|.+|+++|+.++++.+....+|..++|.+.+.+.....+||+
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~  163 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW  163 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999999999999988888999999999999999999998888888998999888776554479999


Q ss_pred             HHHHhHHHHHHHHHHhhc
Q 022246          263 MFGLAAIPSILLALGMGL  280 (300)
Q Consensus       263 ~f~~~~~~~~~~~~~~~~  280 (300)
                      .|++.+++.++..++.++
T Consensus       164 ~f~~~~~~~~~~~~~~~~  181 (394)
T PRK03699        164 VYACIGLVYVAIFILTLF  181 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999988877665554433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=7.9e-21  Score=174.98  Aligned_cols=195  Identities=42%  Similarity=0.692  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHhCCCh---hh--hHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH
Q 022246          103 LPFVGVACLGAILFGYH--LGVVNGALEYLAKDLGIAE---NT--VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ  175 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~---~~--~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~  175 (300)
                      ........+..+..+++  .+..+.....+.+......   +.  ...+|+.+.+.++..++++++|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34444445555555554  3455556666666432111   11  12279999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      ++.+++.++.+++++++|+.+++++|++.|+|.|+...+.+.+++|..|++.||...++......+|..++..++.....
T Consensus       124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~  203 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK  203 (513)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999665555432


Q ss_pred             CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCcccc
Q 022246          256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYI  297 (300)
Q Consensus       256 ~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~  297 (300)
                      ...+||..+++..+.+++.++..+++||+|+|+.++++.++.
T Consensus       204 ~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a  245 (513)
T KOG0254|consen  204 VYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEA  245 (513)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHH
Confidence            114899999999999988888888899999999987776554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.87  E-value=7.9e-21  Score=168.59  Aligned_cols=170  Identities=22%  Similarity=0.298  Sum_probs=151.8

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh
Q 022246          113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ  192 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~  192 (300)
                      .+........+.+..|.+.+++|.+..+.  +++.+.+.++..++.+++|+++||+|||+++..+.++.+++.+++++++
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   91 (385)
T TIGR00710        14 SILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN   91 (385)
T ss_pred             HHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            34445566677788999999999999888  9999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  272 (300)
                      +++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+. .+||+.|++.+++.+
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~  170 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-LSWHAIFAFLSLAGI  170 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988765 789999999888776


Q ss_pred             HHHHH-hhcCCCCh
Q 022246          273 LLALG-MGLSPESP  285 (300)
Q Consensus       273 ~~~~~-~~~~pe~~  285 (300)
                      +..+. .++.||++
T Consensus       171 ~~~~~~~~~~~~~~  184 (385)
T TIGR00710       171 LLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHhCCCCC
Confidence            65544 44566654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00895 2A0115 benzoate transport

Probab=99.87  E-value=5.2e-21  Score=170.16  Aligned_cols=184  Identities=26%  Similarity=0.368  Sum_probs=160.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH
Q 022246          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (300)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~  180 (300)
                      ..+..+..+++..+..++......+..|.+.+++|.+..+.  +++.+++.++..++.++.|+++||+|||+++..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            34555566666677777777778889999999999998888  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246          181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (300)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w  260 (300)
                      .+++.++.++.++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+. .+|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~  170 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-FGW  170 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-ccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988776 789


Q ss_pred             HHHHHHhHHHHHHH-HHHhhcCCCChhH
Q 022246          261 RTMFGLAAIPSILL-ALGMGLSPESPRW  287 (300)
Q Consensus       261 ~~~f~~~~~~~~~~-~~~~~~~pe~~~~  287 (300)
                      ++.|++.+++.++. .+..+++||++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDF  198 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChH
Confidence            99999986555444 4455667877543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.87  E-value=1.1e-20  Score=168.54  Aligned_cols=171  Identities=15%  Similarity=0.183  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      |......++..+.... ....++..|.+++++|++.++.  +++.+++.+++.+++++.|+++||+|||+++..+.++++
T Consensus         9 ~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~   85 (393)
T PRK09705          9 FMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA   85 (393)
T ss_pred             HHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence            4444444444433322 3466789999999999999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                      ++.++++++++++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.+...+||+
T Consensus        86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~  164 (393)
T PRK09705         86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ  164 (393)
T ss_pred             HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999999997 7899999999999999999999998887765458999


Q ss_pred             HHHHhHHHHHHHHHH
Q 022246          263 MFGLAAIPSILLALG  277 (300)
Q Consensus       263 ~f~~~~~~~~~~~~~  277 (300)
                      .+.+.++..++..+.
T Consensus       165 ~~~~~~~~~~~~~~~  179 (393)
T PRK09705        165 TLAWWALPAVVALFA  179 (393)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887766655444333

>TIGR00898 2A0119 cation transport protein

Probab=99.86  E-value=1.1e-21  Score=180.58  Aligned_cols=164  Identities=25%  Similarity=0.400  Sum_probs=148.4

Q ss_pred             hhHHHHHHHhCCC---hhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH
Q 022246          125 GALEYLAKDLGIA---ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR  201 (300)
Q Consensus       125 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (300)
                      ...+.+.+|+|++   ..+.  ++..+++.++..++.+++|+++||+|||++++++.++.+++.++.+++++++.++++|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3567788899998   6666  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~  281 (300)
                      ++.|++.++..+....++.|++|+++|+.+.++...+..+|.++++++++.+.    +||+.|++.++..++..+.++++
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999987763    39999999999888777777889


Q ss_pred             CCChhHHHhhcCc
Q 022246          282 PESPRWLFQVFLH  294 (300)
Q Consensus       282 pe~~~~~~~~~~~  294 (300)
                      ||+|+|+..+++.
T Consensus       264 ~esp~~l~~~~~~  276 (505)
T TIGR00898       264 PESPRWLISQGRI  276 (505)
T ss_pred             CCChHHHHHCCCH
Confidence            9999887655443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.86  E-value=1.5e-21  Score=177.96  Aligned_cols=186  Identities=15%  Similarity=0.111  Sum_probs=160.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----------------------HhCCChhhhHHHHHHHHHHHHHH
Q 022246           98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAK----------------------DLGIAENTVLQGWIVSSLLAGAT  155 (300)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~~~i~~~  155 (300)
                      ..+.++.++.+++++....+.+...++...+.+.+                      +++++..+.  |++.+.+.+++.
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~   90 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQI   90 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHH
Confidence            45556777788888888888888888887777766                      788888887  999999999999


Q ss_pred             HHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHH
Q 022246          156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS  233 (300)
Q Consensus       156 i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  233 (300)
                      ++++++|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus        91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  170 (465)
T TIGR00894        91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG  170 (465)
T ss_pred             HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999999998888876544  567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc-CCCCh
Q 022246          234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESP  285 (300)
Q Consensus       234 ~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~-~pe~~  285 (300)
                      +...+..+|.++++++++.+.+...+||+.|++.+++.++..+++++ .+|+|
T Consensus       171 ~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p  223 (465)
T TIGR00894       171 MSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDP  223 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999988765248999999999888776665544 45544

>PRK10504 putative transporter; Provisional

Probab=99.86  E-value=2.1e-20  Score=170.57  Aligned_cols=175  Identities=24%  Similarity=0.301  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA  185 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~  185 (300)
                      +.++++..++..++...+++..|.+.+++|.+..+.  +++.+.+.++.+++.+++|+++||+|||++++.+.++++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            344455666677777788889999999999999888  899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246          186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG  265 (300)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~  265 (300)
                      ++++++++++.+++.|+++|++.+...+....++.|.+|+++|+++.++......+|..++|.+++.+.+. .+||+.|+
T Consensus        90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-~gw~~~f~  168 (471)
T PRK10504         90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-ASWHWIFL  168 (471)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-ccHHHHHH
Confidence            98899999999999999999999999999999999999999999999999999999999999999998876 78999999


Q ss_pred             HhHHHHHHHHHHh-hcCCC
Q 022246          266 LAAIPSILLALGM-GLSPE  283 (300)
Q Consensus       266 ~~~~~~~~~~~~~-~~~pe  283 (300)
                      +..++.++..+.. ...|+
T Consensus       169 ~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            9887766555443 33454

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.86  E-value=2.6e-20  Score=166.16  Aligned_cols=178  Identities=17%  Similarity=0.219  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (300)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~  184 (300)
                      .+.+.........+....+.+..|.+.+++|.++.+.  +++.+.+.++..++++++|+++||+|||++++.+.++.+++
T Consensus         9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~   86 (394)
T PRK11652          9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            3333333444444556677778899999999999988  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (300)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f  264 (300)
                      .+++.++++++.+++.|++.|++.+...+....++.|.++.++|+.+.++...+..+|..++|.+++.+.+. .+||+.|
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~f  165 (394)
T PRK11652         87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-FGWRACY  165 (394)
T ss_pred             HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHH
Confidence            999999999999999999999998888888888999999999999999999999999999999999988765 7899999


Q ss_pred             HHhHHHHHHHHH-HhhcCCCCh
Q 022246          265 GLAAIPSILLAL-GMGLSPESP  285 (300)
Q Consensus       265 ~~~~~~~~~~~~-~~~~~pe~~  285 (300)
                      ++.+++.++..+ ..+++||++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        166 LFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCccC
Confidence            998877665443 445677764

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.86  E-value=3.8e-21  Score=170.49  Aligned_cols=169  Identities=22%  Similarity=0.226  Sum_probs=151.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh
Q 022246          114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS  193 (300)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~  193 (300)
                      +..+++...++...|.+.+++|.+..+.  +++.+++.++..++.+++|+++||+|||+++..+.++.+++.++++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   81 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA   81 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence            3445566677888899999999999888  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (300)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~  273 (300)
                      ++.++++|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+.+. .+||+.|++.+++.++
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-FSWQWAFIIEGVLGII  160 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999987766 7899999998888766


Q ss_pred             HHHHh-hcCCCCh
Q 022246          274 LALGM-GLSPESP  285 (300)
Q Consensus       274 ~~~~~-~~~pe~~  285 (300)
                      ..+.. ++.||++
T Consensus       161 ~~~~~~~~~~~~~  173 (399)
T TIGR00893       161 WGVLWLKFIPDPP  173 (399)
T ss_pred             HHHHhhheecCCC
Confidence            65544 4455544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.86  E-value=9.2e-21  Score=167.24  Aligned_cols=161  Identities=20%  Similarity=0.132  Sum_probs=138.8

Q ss_pred             HHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHH
Q 022246          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII  199 (300)
Q Consensus       120 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (300)
                      ....++..|++.+++|++..+.  +++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL   96 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356778999999999999988  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh-
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM-  278 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-  278 (300)
                      +|++.|++.+..++.....+.+++| ++|+++.++...+..+|..+++.+.+.+.+. .+||+.|++.+++.++..+.. 
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890        97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-EGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888899887 6799999999999999987655555454444 789999999988887665543 


Q ss_pred             hcCCCC
Q 022246          279 GLSPES  284 (300)
Q Consensus       279 ~~~pe~  284 (300)
                      ++++++
T Consensus       175 ~~~~~~  180 (377)
T TIGR00890       175 FLIGYP  180 (377)
T ss_pred             HheecC
Confidence            444443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.86  E-value=1.3e-21  Score=180.77  Aligned_cols=160  Identities=28%  Similarity=0.279  Sum_probs=143.4

Q ss_pred             HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q 022246          132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS  211 (300)
Q Consensus       132 ~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  211 (300)
                      +.++.+....  .+..+++.+|.++|++++|+++||+|||++++.++++.+++.++.++++|++.++++|++.|++.++.
T Consensus       111 ~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  111 NLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             ceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccch
Confidence            4455555555  88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhh
Q 022246          212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQV  291 (300)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~  291 (300)
                      ..+...+++|++++++|+.+..+ ......++.+++.+++++..   +|||.+|+..++.++.++.+++.||+|+|+..+
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK  264 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence            99999999999999999999999 77777777777777777764   699999999999988888877778999999988


Q ss_pred             cCcccc
Q 022246          292 FLHDYI  297 (300)
Q Consensus       292 ~~~~~~  297 (300)
                      ++.++.
T Consensus       265 g~~~~a  270 (521)
T KOG0255|consen  265 GRIDEA  270 (521)
T ss_pred             CchHHH
Confidence            776544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=2.1e-20  Score=169.70  Aligned_cols=180  Identities=18%  Similarity=0.187  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      |.++..+++.....+.+...+.+..|++.++ |++..+.  +++.+.+.++.+++++++|+++||+|||++++.+.++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            4444445555555555555566788898888 9999888  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHH-HHHHHhhhhccCCC
Q 022246          183 AGAFLCATAQ----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGNP  257 (300)
Q Consensus       183 ~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~  257 (300)
                      ++.+++++.+    +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|. +++|+++..+... 
T Consensus       105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-  183 (452)
T PRK11273        105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF-  183 (452)
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence            9988887753    678889999999999998888888899999999999999999999998886 4566654333323 


Q ss_pred             CchHHHHHHhHHHHHHH-HHHhhcCCCChh
Q 022246          258 LWWRTMFGLAAIPSILL-ALGMGLSPESPR  286 (300)
Q Consensus       258 ~~w~~~f~~~~~~~~~~-~~~~~~~pe~~~  286 (300)
                      .+||+.|++.+++.++. ++..+++||+++
T Consensus       184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~  213 (452)
T PRK11273        184 NDWHAALYMPAFAAILVALFAFAMMRDTPQ  213 (452)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence            58999999988877664 445566787764

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.85  E-value=5.4e-20  Score=162.21  Aligned_cols=172  Identities=16%  Similarity=0.126  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhCCChhh-hHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246          109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENT-VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (300)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~  187 (300)
                      +|+..|+--+ ....+.+.|++.+++|++.++ .  |.+.+++..++++++++.|+++||+|.|+++.++.+.+++..++
T Consensus        32 lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv~--G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L  108 (511)
T TIGR00806        32 LCFYGFMAQF-RPGESFITPYLLTVLNFTEETVT--NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLL  108 (511)
T ss_pred             HHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            3333444333 556677889999999999998 6  99999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHh
Q 022246          188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA  267 (300)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~  267 (300)
                      .+++.++..+.++|++.|++.|+.+ ....++..++|+++|+++.++...+..+|.++++++++++. . .|||+.+.+.
T Consensus       109 ~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-~gWr~y~~Ln  185 (511)
T TIGR00806       109 LLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-LGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCchhHHHHH
Confidence            9999999999999999999999999 99999999999999999999999999999999999999843 3 7898866544


Q ss_pred             ---HHHHHHHHHHhhcCCCChh
Q 022246          268 ---AIPSILLALGMGLSPESPR  286 (300)
Q Consensus       268 ---~~~~~~~~~~~~~~pe~~~  286 (300)
                         .....+.+++.+++|..++
T Consensus       186 ~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       186 IISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHHHHHHHhCCCCch
Confidence               3333445566677885444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.85  E-value=2.6e-20  Score=163.78  Aligned_cols=167  Identities=12%  Similarity=0.015  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH
Q 022246          111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT  190 (300)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~  190 (300)
                      ...++..+........+|.+..+++.+..+.  +++.+++.++..++.+++|+++||+|||++++.+.++.+++.++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            3444555555566778888888999988888  99999999999999999999999999999999999998888888887


Q ss_pred             hh-----hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246          191 AQ-----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG  265 (300)
Q Consensus       191 ~~-----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~  265 (300)
                      ..     +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g~~~~~~  162 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-LGIKWAIW  162 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence            77     9999999999999999999999999999999999999999999999999999999999998765 78999999


Q ss_pred             HhHHHHHHHHHHhhc
Q 022246          266 LAAIPSILLALGMGL  280 (300)
Q Consensus       266 ~~~~~~~~~~~~~~~  280 (300)
                      +.++..++..+..++
T Consensus       163 ~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       163 VDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            988776665544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.85  E-value=5.1e-21  Score=168.95  Aligned_cols=170  Identities=19%  Similarity=0.182  Sum_probs=149.5

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh
Q 022246          113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ  192 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~  192 (300)
                      ++..+++...++...|++.+++|.+..+.  +++.+++.++..++.+++|+++||+|||++++.+.++.+++.+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            44555667777888999999999999888  9999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH-HhhhhccCCCCchHHHHHHhHHHH
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL-VAGLPLAGNPLWWRTMFGLAAIPS  271 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~w~~~f~~~~~~~  271 (300)
                      +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ ++++.+... .+||+.|++.+++.
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  160 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIA  160 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-CCchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 566655544 78999999988777


Q ss_pred             HHHHH-HhhcCCCCh
Q 022246          272 ILLAL-GMGLSPESP  285 (300)
Q Consensus       272 ~~~~~-~~~~~pe~~  285 (300)
                      ++..+ ..++.||++
T Consensus       161 ~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       161 IIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHheeeCCCc
Confidence            66544 445566654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.85  E-value=5.3e-20  Score=164.09  Aligned_cols=172  Identities=23%  Similarity=0.298  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH
Q 022246          111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT  190 (300)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~  190 (300)
                      ...+........+.+.+|.+.+++|.+..+.  ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++..
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455678999999999999888  99999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHH
Q 022246          191 AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP  270 (300)
Q Consensus       191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~  270 (300)
                      +++++.+++.|++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|++++.+.+. .+||+.|++.+++
T Consensus        88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-~g~~~~~~~~~~~  166 (392)
T PRK10473         88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-FPWQSLFYTMAAM  166 (392)
T ss_pred             hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cChHHHHHHHHHH
Confidence            999999999999999999998999999999999999999999999999999999999999887655 7899999998887


Q ss_pred             HHHHHH-HhhcCCCCh
Q 022246          271 SILLAL-GMGLSPESP  285 (300)
Q Consensus       271 ~~~~~~-~~~~~pe~~  285 (300)
                      .++..+ ..+++||++
T Consensus       167 ~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        167 GILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            766554 345567654

>PRK12382 putative transporter; Provisional

Probab=99.85  E-value=6.1e-20  Score=163.69  Aligned_cols=169  Identities=16%  Similarity=0.187  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH-
Q 022246          112 GAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-  189 (300)
Q Consensus       112 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~-  189 (300)
                      ..+.......+..+.+| ++.+++|.+..+.  +++.+.+.+++.++++++|+++||+|||++++.+.++..++.+... 
T Consensus        23 ~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~  100 (392)
T PRK12382         23 AVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLL  100 (392)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence            33444444555566666 5788999999998  9999999999999999999999999999999998887766554322 


Q ss_pred             -------HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          190 -------TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       190 -------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                             ...+++.+++.|+++|++.+...+....++.|.+|+++|+++++++..+..+|..++|.+++.+... .||++
T Consensus       101 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~  179 (392)
T PRK12382        101 AAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH-FGFAA  179 (392)
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-cChHH
Confidence                   1357889999999999999988888889999999999999999999999999999999999888765 78999


Q ss_pred             HHHHhHHHHHHHHHHhhcCCC
Q 022246          263 MFGLAAIPSILLALGMGLSPE  283 (300)
Q Consensus       263 ~f~~~~~~~~~~~~~~~~~pe  283 (300)
                      .+++..+..++..+.....||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~  200 (392)
T PRK12382        180 LALTTMVLPLLAWAFNGTVRK  200 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhccC
Confidence            877765554443333333444

>PRK11043 putative transporter; Provisional

Probab=99.85  E-value=5.1e-20  Score=164.68  Aligned_cols=169  Identities=18%  Similarity=0.224  Sum_probs=147.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh
Q 022246          113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ  192 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~  192 (300)
                      ..+..+....+.+..+.+.+++|.+..+.  ++..+++.++..++.+++|+++||+|||+++..+.++.+++.+++++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            33344555677777888999999999988  9999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  272 (300)
                      +++.+++.|++.|++.+...+....++.|.+++++++...+.......+|..++|++++.+.+. .+||+.|++.+++.+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~  171 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-FGWQAIFATLFAITL  171 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Confidence            9999999999999998888888888999999999999999998888899999999999998766 799999999888887


Q ss_pred             HHHHHhhcCCCC
Q 022246          273 LLALGMGLSPES  284 (300)
Q Consensus       273 ~~~~~~~~~pe~  284 (300)
                      +..+..++++|+
T Consensus       172 ~~~~~~~~~~~~  183 (401)
T PRK11043        172 LLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHcCCC
Confidence            766655555543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.85  E-value=8.8e-20  Score=163.01  Aligned_cols=172  Identities=17%  Similarity=0.133  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246          109 ACLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (300)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~  187 (300)
                      .++..+...++..+..+.+|. +.+++|.+..+.  +++.+++.+++.+++++.|+++||+|||++++.+.++++++.+.
T Consensus        20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (399)
T PRK05122         20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLL   97 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHH
Confidence            444555555556666667764 778999998888  99999999999999999999999999999999999888877665


Q ss_pred             HHHh--------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 022246          188 CATA--------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW  259 (300)
Q Consensus       188 ~~~~--------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  259 (300)
                      ++++        .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+... .+
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g  176 (399)
T PRK05122         98 YLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW-GG  176 (399)
T ss_pred             HHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc-cc
Confidence            5443        25678899999999999999999999999999999999999999999999999999999988765 88


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcCCC
Q 022246          260 WRTMFGLAAIPSILLALGMGLSPE  283 (300)
Q Consensus       260 w~~~f~~~~~~~~~~~~~~~~~pe  283 (300)
                      |++.+++.+++.++..+.....|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~  200 (399)
T PRK05122        177 LAGLGLLIMLLALLGLLLARPRPA  200 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999988877766554444443444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.84  E-value=6.6e-20  Score=161.70  Aligned_cols=174  Identities=24%  Similarity=0.234  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246          109 ACLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (300)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~  187 (300)
                      .++..+........+.+..| ++++++|++..+.  +++.+++.++++++++++|+++||+|||++++.+.++.+++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            33444444555557777888 5999999999988  99999999999999999999999999999999999999999999


Q ss_pred             HHHhh-hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC---------CC
Q 022246          188 CATAQ-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NP  257 (300)
Q Consensus       188 ~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~  257 (300)
                      +++++ +++.+++.|++.|++.+ .+.....+++|++|+++|+++.++......+|..+++.+++.+..         ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        84 AGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            99999 99999999999999855 456778899999999999999999987777777777666655432         12


Q ss_pred             CchHHHHHH-hHHHHHHH-HHHhhcCCCCh
Q 022246          258 LWWRTMFGL-AAIPSILL-ALGMGLSPESP  285 (300)
Q Consensus       258 ~~w~~~f~~-~~~~~~~~-~~~~~~~pe~~  285 (300)
                      .+||+.|++ .+++.++. .+..++.+|++
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence            489999944 34444333 33444455544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.84  E-value=6.1e-20  Score=166.07  Aligned_cols=181  Identities=17%  Similarity=0.137  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      +..+....+.....+.....+....|++++ +|++.++.  +++.+++.++..++.+++|+++||+|||++++.+.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            445555555666666656656667788876 59999988  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh----hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 022246          183 AGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL  258 (300)
Q Consensus       183 ~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  258 (300)
                      ++.++++..    .++..+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|..+++.+.+.......
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence            888877654    4677788899999999998888889999999999999999999999999999888777655433336


Q ss_pred             chHHHHHHhHHHHHHHH-HHhhcCCCChh
Q 022246          259 WWRTMFGLAAIPSILLA-LGMGLSPESPR  286 (300)
Q Consensus       259 ~w~~~f~~~~~~~~~~~-~~~~~~pe~~~  286 (300)
                      +||+.|++.+++.++.. +.++++||+++
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~  211 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAMMRDTPQ  211 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            89999999888876654 45566787664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.83  E-value=1.5e-19  Score=164.14  Aligned_cols=174  Identities=14%  Similarity=0.100  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      |.++..+++...........++...+.+.+++|.+.++.  +++.+.+.++..++.+++|+++||+|||++++.+.++.+
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   95 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS   95 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence            555555555555444444456668899999999998888  899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHH-HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH
Q 022246          183 AGAFLCATAQSVQTMII-GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (300)
Q Consensus       183 ~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~  261 (300)
                      ++.++++++++++.+++ .|++.|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+. .|||
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-~gwr  173 (455)
T TIGR00892        96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES-FGWR  173 (455)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hChH
Confidence            99999999999988865 4689999988776777788889986 7899999999999999999999999888765 7999


Q ss_pred             HHHHHhHHHHHHHHHHhhc
Q 022246          262 TMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       262 ~~f~~~~~~~~~~~~~~~~  280 (300)
                      +.|++.+++.+++.+..++
T Consensus       174 ~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       174 GSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999887665554433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.83  E-value=3e-19  Score=163.06  Aligned_cols=178  Identities=18%  Similarity=0.144  Sum_probs=141.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHH
Q 022246           98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQL  176 (300)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~  176 (300)
                      +++..+.+++......+.++.   .......|+.+++|++..+.  +++.+.+.....+..+++|+++|| +|||++++.
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~---~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYG---VQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            344444444443333333322   33446678889999998888  899999988888888999999999 999999999


Q ss_pred             HhHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhhhhhhhhhhhhhhccCCccc--chhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          177 DAVPLAAGAFLCATAQSVQT-MIIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~-l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      +.++++++.++++++.+... +++.|+++|++.|...+...+++.|.+|+++  |+.++++++++.++|.+++|.+++++
T Consensus        87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876444 4578999999999999999999999998874  57899999999999999999999999


Q ss_pred             cCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246          254 AGNPLWWRTMFGLAAIPSILLALGMGLS  281 (300)
Q Consensus       254 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~  281 (300)
                      .+. .|||+.|++.++..++..+.+++.
T Consensus       167 ~~~-~gw~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        167 ADK-FGYSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHh-hChHHHHHHHHHHHHHHHHHHHHc
Confidence            877 799999999765444444443333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.83  E-value=1.6e-19  Score=160.05  Aligned_cols=163  Identities=26%  Similarity=0.378  Sum_probs=147.0

Q ss_pred             HHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHH
Q 022246          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII  199 (300)
Q Consensus       120 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (300)
                      ..++.+..|.+.+++|++..+.  +++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+.++++.+++
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            4456678899999999999888  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-Hh
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GM  278 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~  278 (300)
                      .|++.|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+. .+||+.|++.+++.++..+ ..
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-FSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988765 7899999998887766544 44


Q ss_pred             hcCCCCh
Q 022246          279 GLSPESP  285 (300)
Q Consensus       279 ~~~pe~~  285 (300)
                      +++||++
T Consensus       164 ~~~~~~~  170 (377)
T PRK11102        164 FFIPETL  170 (377)
T ss_pred             HhCCccC
Confidence            5667754

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.83  E-value=3.2e-19  Score=159.09  Aligned_cols=167  Identities=19%  Similarity=0.082  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh
Q 022246          112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA  191 (300)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~  191 (300)
                      +.++..+....+....+.+.+++|.+....  +++.+.+.+++.++.+++|+++||+|||++++.+.++.+++.+++++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~   88 (393)
T PRK11195         11 AQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG   88 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence            344444333333445556678999888777  999999999999999999999999999999999999998888877776


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246          192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (300)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~  271 (300)
                      .+.   ++.|+++|++.+...|...+++.|++|+++|++++++......+|.++||.+++.+.+.  .|+..+++.+...
T Consensus        89 ~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~  163 (393)
T PRK11195         89 IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIY  163 (393)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            664   67899999999999999999999999999999999999999999999999999999764  3777777766655


Q ss_pred             HHHHHHhhcCCCCh
Q 022246          272 ILLALGMGLSPESP  285 (300)
Q Consensus       272 ~~~~~~~~~~pe~~  285 (300)
                      ++..+..+++||.+
T Consensus       164 ~~~~~~~~~l~~~~  177 (393)
T PRK11195        164 LLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHhcCCCCc
Confidence            55555566677754

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.83  E-value=7.2e-19  Score=157.28  Aligned_cols=177  Identities=11%  Similarity=0.011  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          104 PFVGVACLGAILFGYHLGVVNGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      +.+.+..+..+.........++..+.+.+ ++|++.++.  +++.+++.+++.++.++.|++.||+|.|+++.++.++++
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34555555555666666677887887766 899999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-----hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc---
Q 022246          183 AGAFLCATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA---  254 (300)
Q Consensus       183 ~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---  254 (300)
                      +.+++.+++     ++++.+++.|++.|++ ++.++.....++++||+++||+++|++....++|..++++++..+.   
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~  190 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP  190 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999887     8999999999999998 7788999999999999999999999997666666655544443321   


Q ss_pred             --C------------CCCchHHHHHHhHHHHHHHHHHh-hcCCC
Q 022246          255 --G------------NPLWWRTMFGLAAIPSILLALGM-GLSPE  283 (300)
Q Consensus       255 --~------------~~~~w~~~f~~~~~~~~~~~~~~-~~~pe  283 (300)
                        .            ...+||..+++..++.++..++. +++++
T Consensus       191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence              0            12458888888888776665544 44444

>PRK10054 putative transporter; Provisional

Probab=99.82  E-value=5.9e-19  Score=157.51  Aligned_cols=163  Identities=20%  Similarity=0.180  Sum_probs=139.7

Q ss_pred             HHHHhhhh-hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHH
Q 022246          118 YHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT  196 (300)
Q Consensus       118 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  196 (300)
                      .......+ ..+++.+++|++..+.  +++.+++.+++.+++++.|+++||+|||++++.+.++.+++.++.++.++++.
T Consensus        21 ~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~   98 (395)
T PRK10054         21 IGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTL   98 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence            33334444 4567888999999998  99999999999999999999999999999999999999999888999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      +++++++.|.+.+...+....+..|.+|+++|++++++......+|.+++|.+++.+..  .+|++.|++.+++.++..+
T Consensus        99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~~f~~~~~~~~i~~i  176 (395)
T PRK10054         99 VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINLPFWLAAICSAFPLV  176 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcHHHHHHHHHHHHHH
Confidence            98889888888777788889999999999999999999999999999999999998864  6899999998887766654


Q ss_pred             H-hhcCCCC
Q 022246          277 G-MGLSPES  284 (300)
Q Consensus       277 ~-~~~~pe~  284 (300)
                      . .+++||+
T Consensus       177 ~~~~~~~~~  185 (395)
T PRK10054        177 FIQIWVQRS  185 (395)
T ss_pred             HHHHHHhcc
Confidence            3 3445554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.82  E-value=5.1e-20  Score=172.60  Aligned_cols=176  Identities=14%  Similarity=0.148  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~  186 (300)
                      +..++..+...+..+..+..++.++++|+++..+.  |++.+.+.++++++.++.+++.||+|||+++.++.++++++.+
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            34444566666667788889999999999999998  9999999999999999999999999999999999999999999


Q ss_pred             HHHHhh---------------------------------------------------hHHHHHHHHHHHHHhhhhhhhhh
Q 022246          187 LCATAQ---------------------------------------------------SVQTMIIGRVLAGIGIGISSAIV  215 (300)
Q Consensus       187 ~~~~~~---------------------------------------------------~~~~l~~~~~l~G~~~~~~~~~~  215 (300)
                      ++++.+                                                   .+..++++|+++|+|.+..++..
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~  193 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG  193 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence            887653                                                   24567789999999999999999


Q ss_pred             hhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC---------------------chHHHHHHhHHHHHHH
Q 022246          216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL---------------------WWRTMFGLAAIPSILL  274 (300)
Q Consensus       216 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------------------~w~~~f~~~~~~~~~~  274 (300)
                      .+++.|++|+++|+.+++++..+..+|.++|+++++.+.+...                     .|+..|++.+++.++.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~  273 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT  273 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988764211                     2777788888888776


Q ss_pred             HHHhhcCCCC
Q 022246          275 ALGMGLSPES  284 (300)
Q Consensus       275 ~~~~~~~pe~  284 (300)
                      ++.++++|++
T Consensus       274 ~v~l~~~p~~  283 (633)
T TIGR00805       274 SIPFFFFPKA  283 (633)
T ss_pred             HHHHHhCccc
Confidence            6666666654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10133 L-fucose transporter; Provisional

Probab=99.82  E-value=1.7e-18  Score=156.42  Aligned_cols=147  Identities=18%  Similarity=0.222  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (300)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~  184 (300)
                      .+...++..+...+.........|.+++++|++..+.  ++..+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3444445556666667788889999999999999888  99999999999999999999999999999999999999999


Q ss_pred             HHHH---HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          185 AFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       185 ~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      .+++   +.+++++.++++|+++|++.+...+....++.|..+.++|+..+++.+....+|..+++++++.+
T Consensus       105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9875   46789999999999999999999999999999987777777789999999999999999887654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.81  E-value=1.9e-18  Score=154.10  Aligned_cols=198  Identities=37%  Similarity=0.655  Sum_probs=158.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--------HHhC--CChhh--hHHHHHHHHHHHHHHHHHhhhhhhccc
Q 022246          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLA--------KDLG--IAENT--VLQGWIVSSLLAGATVGSFTGGSLADK  167 (300)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~s~~~--~~~~~~~~~~~i~~~i~~~~~g~lsd~  167 (300)
                      ++...+.....++.+-++|....++.....+.        +.+|  .++++  ...+.+.+++.+|.++|.++.++++||
T Consensus         7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~   86 (485)
T KOG0569|consen    7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR   86 (485)
T ss_pred             HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444455555566777787777766544433        3445  33332  245778899999999999999999999


Q ss_pred             cCchHHHHHHhHHHHHHHHHHHH---hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 022246          168 FGRTRTFQLDAVPLAAGAFLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL  244 (300)
Q Consensus       168 ~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  244 (300)
                      +|||..+.++.++..++.++..+   .+++.++++.|++.|+..|......+.++.|..|.+.||....+...+..+|.+
T Consensus        87 ~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l  166 (485)
T KOG0569|consen   87 FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGIL  166 (485)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHH
Confidence            99999999888887777665554   478899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhh-ccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHh-hcCcccc
Q 022246          245 AALVAGLP-LAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ-VFLHDYI  297 (300)
Q Consensus       245 ~~~~~~~~-~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~-~~~~~~~  297 (300)
                      ++..++.. +..+...|.+.+.+..+++++..+...++||+|+++.. +++.+++
T Consensus       167 l~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A  221 (485)
T KOG0569|consen  167 LGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEA  221 (485)
T ss_pred             HHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHH
Confidence            98666543 44444679999999999999999999999999999987 5665554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.81  E-value=7.7e-20  Score=164.84  Aligned_cols=187  Identities=18%  Similarity=0.209  Sum_probs=156.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH
Q 022246           98 SSGVVLPFVGVACLGAILFGYHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL  176 (300)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~  176 (300)
                      .+|..+.++..+++.++..+.+...++. .+..+.+|.++..++.  +++.+++.++++++.++++.|.||++-.+.+..
T Consensus        39 ~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~  116 (495)
T KOG2533|consen   39 LRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSV  116 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHH
Confidence            3344455555555666666655554433 2233558888888888  999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC-
Q 022246          177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-  255 (300)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-  255 (300)
                      ..+++++..++.+...|++.+++.|+++|+.+++.+|....+++.+|.+++|++.+++++....+|+++|.+++..+.. 
T Consensus       117 ~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~  196 (495)
T KOG2533|consen  117 SGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL  196 (495)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence            9999999998888899999999999999999999999999999999999999999999999999999999999988532 


Q ss_pred             ----CCCchHHHHHHhHHHHHHHHHH-hhcCCCChh
Q 022246          256 ----NPLWWRTMFGLAAIPSILLALG-MGLSPESPR  286 (300)
Q Consensus       256 ----~~~~w~~~f~~~~~~~~~~~~~-~~~~pe~~~  286 (300)
                          ...||||.|++.+++.++..++ ++++|+.|.
T Consensus       197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  197 NGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             cCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence                2378999999999999887765 455788775

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.81  E-value=1e-18  Score=156.51  Aligned_cols=175  Identities=16%  Similarity=0.191  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~  186 (300)
                      .+++...+..++......+..|.+++++|++..+.  +++.+.+.+++.++.++.|++.||+|||++++.+.++++++.+
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            34455666667777788889999999999999988  9999999999999999999999999999999999999999988


Q ss_pred             HHHH---hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-------
Q 022246          187 LCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-------  256 (300)
Q Consensus       187 ~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------  256 (300)
                      ++..   .++++.+++.|++.|++.+...+....++.+..|+++|++.+++.+....+|..++|.+++.+...       
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~  163 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ  163 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            7644   358999999999999999999999999999999999999999999999999999999998876422       


Q ss_pred             ------------------CCchHHHHHHhHHHHHHHHHHhhc--CCC
Q 022246          257 ------------------PLWWRTMFGLAAIPSILLALGMGL--SPE  283 (300)
Q Consensus       257 ------------------~~~w~~~f~~~~~~~~~~~~~~~~--~pe  283 (300)
                                        ..+||+.|++.+++.++..++..+  .|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~  210 (410)
T TIGR00885       164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA  210 (410)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                              125999999888877665544433  454

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.81  E-value=1.4e-18  Score=155.44  Aligned_cols=173  Identities=24%  Similarity=0.192  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhh---HHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~  186 (300)
                      ++..++..+......+.+|.+.+++|++..+.   ..+++.+++.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   99 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV   99 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence            44455555666677788898889999886542   237888999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHH
Q 022246          187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL  266 (300)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~  266 (300)
                      ++++.++++.+++.|++.|++.+ ..+....++.|.+|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~  177 (408)
T PRK09874        100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS-YGLRPVFFI  177 (408)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHH
Confidence            88899999999999999999754 5677788899999999999999999999999999999999988765 789999999


Q ss_pred             hHHHHHHHHHH-hhcCCCC
Q 022246          267 AAIPSILLALG-MGLSPES  284 (300)
Q Consensus       267 ~~~~~~~~~~~-~~~~pe~  284 (300)
                      .+++.++..+. .+++||+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        178 TASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            98877665543 4445654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.81  E-value=2.1e-18  Score=153.21  Aligned_cols=149  Identities=19%  Similarity=0.250  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA  185 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~  185 (300)
                      +...++..++.........+..|.+.+++|.+..+.  |++.+.+.++..++++++|+++||+|||+++..+.++.+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~   85 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445666666777788889999999999998888  999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246          186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (300)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  256 (300)
                      ++++++++++.++++|++.|++.+...+.....+.+..++++|+++++++..+..+|..++|.+++.+.+.
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999998888888888999999999999999999999999999999988654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.81  E-value=1.1e-18  Score=159.31  Aligned_cols=169  Identities=26%  Similarity=0.382  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      +..+..+++.....++........++++..|+|-++..   .|+.+...++.+++.++.|+|+|.||||++++.+.++..
T Consensus        43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v  119 (599)
T PF06609_consen   43 IASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV  119 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence            33333444444444455555566788999999987655   589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                      ++.++++.++|...+++...+.|+|.|... .....++|..|.+.|+.+.++......+...+++.++..+..+ .+|||
T Consensus       120 vG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-~~WRw  197 (599)
T PF06609_consen  120 VGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-SGWRW  197 (599)
T ss_pred             hHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-CCcch
Confidence            999999999999999999999999977665 4566689999999998888877766666666788888776554 78999


Q ss_pred             HHHHhHHHHHHHHH
Q 022246          263 MFGLAAIPSILLAL  276 (300)
Q Consensus       263 ~f~~~~~~~~~~~~  276 (300)
                      .|++..++..+.++
T Consensus       198 ~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  198 IFYIFIIWSGIALV  211 (599)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988766544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.81  E-value=2.8e-18  Score=153.43  Aligned_cols=156  Identities=20%  Similarity=0.153  Sum_probs=139.0

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  203 (300)
                      ....+++++++|.+..+.  |++.+.+.++..+..+++|+++||+|||++++.+.++.+++.+++.+.++++.+++.|++
T Consensus        31 ~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  108 (400)
T PRK11646         31 PLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCIL  108 (400)
T ss_pred             HHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            335557889999999888  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-HhhcCC
Q 022246          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GMGLSP  282 (300)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~p  282 (300)
                      .|++.+...+...+++.|.+|+++|++++++......+|..+||.+++.+. . .+||+.|++.++..++..+ ..+++|
T Consensus       109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~-~g~~~~f~~~~~~~~~~~i~~~~~~~  186 (400)
T PRK11646        109 SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q-YDFRLVCATGAVLFVLAAAFNAWLLP  186 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999998888888999999999999999999999999999999999999987 4 7899999998877665543 344556


Q ss_pred             C
Q 022246          283 E  283 (300)
Q Consensus       283 e  283 (300)
                      |
T Consensus       187 ~  187 (400)
T PRK11646        187 A  187 (400)
T ss_pred             c
Confidence            5

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.80  E-value=9.5e-19  Score=152.72  Aligned_cols=168  Identities=35%  Similarity=0.494  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH
Q 022246          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA  189 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~  189 (300)
                      ++..+...+.........+.+.+++|.+..+.  ++..+...++..++.+++|+++||+|||+.+..+.++..++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            44555666666777888899999999998888  9999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHH
Q 022246          190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI  269 (300)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~  269 (300)
                      +.++++.+++.|++.|++.+...+....++.|++|+++|++.+++......+|..++|.+++.+.+. .+||+.|++.++
T Consensus        83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~  161 (352)
T cd06174          83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAI  161 (352)
T ss_pred             HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998876 679999999888


Q ss_pred             HHHHHHHHhhc
Q 022246          270 PSILLALGMGL  280 (300)
Q Consensus       270 ~~~~~~~~~~~  280 (300)
                      +.++..+..++
T Consensus       162 ~~~~~~~~~~~  172 (352)
T cd06174         162 LGLLLALLLLF  172 (352)
T ss_pred             HHHHHHHHHHH
Confidence            77666554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.80  E-value=2.1e-18  Score=157.27  Aligned_cols=165  Identities=18%  Similarity=0.192  Sum_probs=138.6

Q ss_pred             HHHHHHHHHhhhh-hHHHHHHH--hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhHHHHHHHHHH
Q 022246          113 AILFGYHLGVVNG-ALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLC  188 (300)
Q Consensus       113 ~~~~~~~~~~~~~-~~~~~~~~--~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~~~~~~~~~~  188 (300)
                      .+...+.+....+ ...++.++  +|++..+.  +++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.
T Consensus        19 ~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~   96 (475)
T TIGR00924        19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML   96 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            3333333333344 44455666  89998888  999999999999999999999999 899999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCccc---chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHH
Q 022246          189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG  265 (300)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~  265 (300)
                      +++++++.+++.+++.|++.|...+...++++|++|+++   |+.++++++.+.++|.+++|++++.+.+. .+|++.|+
T Consensus        97 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-~g~~~~f~  175 (475)
T TIGR00924        97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-YGYHVGFN  175 (475)
T ss_pred             HhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh-cChHHHHH
Confidence            998888888899999999999999999999999998764   88899999999999999999999998865 78999999


Q ss_pred             HhHHHHHHHHHHhhc
Q 022246          266 LAAIPSILLALGMGL  280 (300)
Q Consensus       266 ~~~~~~~~~~~~~~~  280 (300)
                      +.++..++..+.+++
T Consensus       176 ~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       176 LAAVGMVIGLLTFFA  190 (475)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988665555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.80  E-value=1.9e-18  Score=152.84  Aligned_cols=171  Identities=18%  Similarity=0.112  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH-HHhHHHHHHHHHHHH
Q 022246          113 AILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCAT  190 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~-~~~~~~~~~~~~~~~  190 (300)
                      .++..+......+.++ ++.+++|.+..+.  +++.+++.++..+.+++.|+++||+|||+.++ .+.++.+++.+++++
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            4455555556666666 5778999998888  99999999999999999999999999988765 456666677788888


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhh--HHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246          191 AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL--GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (300)
Q Consensus       191 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~  268 (300)
                      +++++.+++.|++.|.+.+...+....+..|..|++.|+.+  .++...+..+|.+++|.+++.+.+. .+||+.|++.+
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~f~~~~  162 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-FGFTVMFLTAA  162 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-cccHHHHHHHH
Confidence            99999999999999888777888888888898887777654  5777888889999999999988766 78999999998


Q ss_pred             HHHHHHHHH-hhcCCCChh
Q 022246          269 IPSILLALG-MGLSPESPR  286 (300)
Q Consensus       269 ~~~~~~~~~-~~~~pe~~~  286 (300)
                      ++.++..+. ++++||.++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHHHHHhCCCccc
Confidence            877666554 455787654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PTZ00207 hypothetical protein; Provisional

Probab=99.80  E-value=5.4e-18  Score=155.70  Aligned_cols=172  Identities=12%  Similarity=0.089  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (300)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~  181 (300)
                      +|..+..........+.. ..++...+.+++++|++..+.  +++.++. ....+++++.|+++||+|||++++++.+++
T Consensus        26 Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         26 RFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            344444444444443332 234557788999999999888  7777763 344567778999999999999999999999


Q ss_pred             HHHHHHHHHh------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHH-HHHhhhhcc
Q 022246          182 AAGAFLCATA------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILA-ALVAGLPLA  254 (300)
Q Consensus       182 ~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~  254 (300)
                      +++.++++++      ++++.+.+.|++.|++.+..++....++.++|| ++||++.|+..++..+|+++ +++..+++.
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987      689999999999999999998999999999997 77999999999999999964 666665553


Q ss_pred             CCCCchHHHHHHhHHHHHHHHH-HhhcC
Q 022246          255 GNPLWWRTMFGLAAIPSILLAL-GMGLS  281 (300)
Q Consensus       255 ~~~~~w~~~f~~~~~~~~~~~~-~~~~~  281 (300)
                         .+|++.|++.+++.++..+ .++++
T Consensus       181 ---~~~~~~fl~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        181 ---DNTSAYFFFLMSFALVVGILAIVFM  205 (591)
T ss_pred             ---HhHHHHHHHHHHHHHHHHHHHHhhe
Confidence               4588888888888866554 34444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.79  E-value=1.5e-21  Score=177.14  Aligned_cols=189  Identities=37%  Similarity=0.611  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHH--HHhCCChh-------hhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246          111 LGAILFGYHLGVVNGALEYLA--KDLGIAEN-------TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (300)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~-------~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~  181 (300)
                      ++.+..+++...++...+...  ..++.+..       +...++..+...+|..+|.+++|+++||+|||++++++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            444677777777666555444  22222221       122378899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh---hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC--
Q 022246          182 AAGAFLCATAQ---SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--  256 (300)
Q Consensus       182 ~~~~~~~~~~~---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--  256 (300)
                      .++.++.++++   +++.++++|++.|++.|+..+....++.|..|+++|+...++...+..+|.+++.+++..+...  
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  166 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD  166 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999   9999999999999999999999999999999999999999999999999998888887665332  


Q ss_pred             CCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCcccccC
Q 022246          257 PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYISH  299 (300)
Q Consensus       257 ~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~  299 (300)
                      ..+||+.+++.++++++..+..+++||+|+|+..++|.++.++
T Consensus       167 ~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~  209 (451)
T PF00083_consen  167 NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEK  209 (451)
T ss_pred             cccccccccccccccccccccccccccccceeccccccccccc
Confidence            1359999999999988888888889999999998887776543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.78  E-value=1.1e-18  Score=156.86  Aligned_cols=168  Identities=18%  Similarity=0.158  Sum_probs=142.1

Q ss_pred             HHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH----
Q 022246          115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT----  190 (300)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~----  190 (300)
                      ...+.........|.+.++++.+..+.  +++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++.+.    
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         28 ISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            334444566668888888898888777  99999999999999999999999999999999888877776655442    


Q ss_pred             -hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHH
Q 022246          191 -AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI  269 (300)
Q Consensus       191 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~  269 (300)
                       .++++.+++.|++.|++.+...+....++.|++|+++|+++.++......+|..+||.+++.+.+. .+|+|.|++.++
T Consensus       106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-~~~~~~~~~~~~  184 (417)
T PRK10489        106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-GGVAWNYGLAAA  184 (417)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-HhhHHHHHHHHH
Confidence             467888899999999998888888899999999999999999999999999999999999988765 789999999888


Q ss_pred             HHHHHHHHhhcCCCCh
Q 022246          270 PSILLALGMGLSPESP  285 (300)
Q Consensus       270 ~~~~~~~~~~~~pe~~  285 (300)
                      ..++..+..+.+|+++
T Consensus       185 ~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        185 GTFITLLPLLRLPALP  200 (417)
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            7777666666777654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=2.1e-18  Score=155.09  Aligned_cols=152  Identities=23%  Similarity=0.342  Sum_probs=136.7

Q ss_pred             HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhh
Q 022246          132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIG  209 (300)
Q Consensus       132 ~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~  209 (300)
                      .+++.+.++.  +++.+.+..|+.+++++.|+++||+|-|+++..+.++.++++++..++.  +++.++++|+++|++.|
T Consensus        66 ~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g  143 (466)
T KOG2532|consen   66 GEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG  143 (466)
T ss_pred             ceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence            3567777777  9999999999999999999999999999999999999999999888765  44577999999999999


Q ss_pred             hhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc-CCCCh
Q 022246          210 ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESP  285 (300)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~-~pe~~  285 (300)
                      ..++....+.+.|.|++||++..++...+..+|.+++..++|.+.+...||++.|++.++.+++..+++++ ..|+|
T Consensus       144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P  220 (466)
T KOG2532|consen  144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP  220 (466)
T ss_pred             HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999877689999999999999887776554 44444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=4.4e-18  Score=143.40  Aligned_cols=192  Identities=20%  Similarity=0.228  Sum_probs=168.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (300)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~  179 (300)
                      +..|...+.+.+......+.....+...|.+.+..|.+..+.  .++......|..++...||.++|++|||+.+.+...
T Consensus        74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            444566667777777777666677778888999999888877  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 022246          180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW  259 (300)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  259 (300)
                      ..++..++.+.++|+..+.++|.+.|+|.|+ +|...++-.|..|..+|+..+-.. ..+.+|.++...+++..... .|
T Consensus       152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~-~g  228 (528)
T KOG0253|consen  152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-FG  228 (528)
T ss_pred             HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-hh
Confidence            9999999999999999999999999999999 899999999999999998877766 88899999999999888776 89


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCccc
Q 022246          260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDY  296 (300)
Q Consensus       260 w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~  296 (300)
                      |||..........+.+.+.+++||+|++...+++.++
T Consensus       229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k  265 (528)
T KOG0253|consen  229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK  265 (528)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH
Confidence            9999999888878788888899999999887766543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.78  E-value=1.2e-17  Score=153.28  Aligned_cols=166  Identities=14%  Similarity=0.080  Sum_probs=125.8

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH---HHHhhhHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIG  200 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~  200 (300)
                      .+.++++.+++|++....  ++......++..++.+++|+++||+|||+++..+.++..+..+.   ...+.+...+++.
T Consensus       271 ~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (490)
T PRK10642        271 TYMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG  348 (490)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            345556667889987766  67778888899999999999999999999988877654433322   2233456777788


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      +++.|++.+...+....++.|.+|++.|++++++.+....+++.++|.+.+.+.+...+|+..+++..+.+++.++..++
T Consensus       349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            88888887777777888899999999999999985444556667788888877654345787777777777777777777


Q ss_pred             CCCChhHHHhh
Q 022246          281 SPESPRWLFQV  291 (300)
Q Consensus       281 ~pe~~~~~~~~  291 (300)
                      +||+|+++.++
T Consensus       429 ~pes~~~~~~~  439 (490)
T PRK10642        429 MKETANRPLKG  439 (490)
T ss_pred             hccccCCCCCC
Confidence            89999886643

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.78  E-value=1.2e-17  Score=148.24  Aligned_cols=173  Identities=20%  Similarity=0.280  Sum_probs=135.3

Q ss_pred             HHHHHHHhhhhhHHHHHHHhCC--ChhhhHHHHHHH--HH---HHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246          115 LFGYHLGVVNGALEYLAKDLGI--AENTVLQGWIVS--SL---LAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (300)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~--~~---~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~  187 (300)
                      .++++...+++..+++.+++..  ++++.  +...+  .+   .++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLV--ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            4456666777777777777654  23333  33333  22   2333468899999999999999999999999999999


Q ss_pred             HHHhhhHH--------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC----
Q 022246          188 CATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG----  255 (300)
Q Consensus       188 ~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----  255 (300)
                      +++++++.        .+++.|+++|++.+...+....++.|++++++|++..++...+..+|.+++++++..+..    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~  161 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD  161 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            99988865        478899999999999999999999999999999999999999999999999887765432    


Q ss_pred             ---CCCchHHHHHHhHHHHHHHHHHhhcCCCChhHHH
Q 022246          256 ---NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF  289 (300)
Q Consensus       256 ---~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~  289 (300)
                         ...+||+.|++.+++.++..++....||++++..
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEK  198 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence               2368999999888777666666566788765443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00897 2A0118 polyol permease family

Probab=99.77  E-value=2e-17  Score=148.07  Aligned_cols=144  Identities=10%  Similarity=0.047  Sum_probs=121.0

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH---H-hhhHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---T-AQSVQTMIIGR  201 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~~  201 (300)
                      .++.+.+++|.+..+.  ++..+.+.+++.++.+++|+++||+|||+++..+.++++++.+++.   . .++++.+++.|
T Consensus        35 ~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  112 (402)
T TIGR00897        35 WLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY  112 (402)
T ss_pred             hHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence            4455558899999888  9999999999999999999999999999999999999888876543   3 25788888999


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHH-HHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  272 (300)
                      ++.|++.+...+.....+.+.+|+++|++++|+..++..+|. .++|.+++.+.+. .||+..+|......+
T Consensus       113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~  183 (402)
T TIGR00897       113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA-FGEMNTLWSALAFVL  183 (402)
T ss_pred             HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHH
Confidence            999999888777788889999999999999999999999996 6889998887765 677666665544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.76  E-value=3.4e-17  Score=150.23  Aligned_cols=149  Identities=24%  Similarity=0.257  Sum_probs=123.9

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGR  201 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  201 (300)
                      .....++.+++|++..+.  ++..+.+........+++|+++|| +|||++++.+.++.+++.++++++. +...+++.+
T Consensus        42 ~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~  119 (500)
T PRK09584         42 GIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGM  119 (500)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            346667889999998887  677777766555666789999999 5999999999999999988888874 456677788


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCccc--chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  275 (300)
                      +++|++.|...+....++.|++|+++  |..++++++++.++|.+++|++++++.+. .|||+.|++.++..++..
T Consensus       120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK-YGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHH
Confidence            99999999888888899999998653  45688899999999999999999999876 799999999876555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=8e-18  Score=142.49  Aligned_cols=143  Identities=20%  Similarity=0.178  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246          142 LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (300)
Q Consensus       142 ~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (300)
                      ..|.+.+.+.+++.+..+.+|.++||+|||+++.+|++..++...+.+++.|+..+++.|++.|+..|- ..+..++++|
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisd  147 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAIISD  147 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHh
Confidence            448999999999999999999999999999999999999999999999999997777779999999764 5788999999


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC---CCCch--HHHHHHhHHHHHH-HHHHhhcCCCCh
Q 022246          222 ISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---NPLWW--RTMFGLAAIPSIL-LALGMGLSPESP  285 (300)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~w--~~~f~~~~~~~~~-~~~~~~~~pe~~  285 (300)
                      .+++++|+.+++.+.....+|.++||.+|+++.+   ....+  -..-++..++.+. ..++.+++|||-
T Consensus       148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             hcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9999999999999999999999999999999876   11111  1222333333333 334557789984

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.75  E-value=3.7e-18  Score=147.76  Aligned_cols=188  Identities=24%  Similarity=0.300  Sum_probs=152.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-C-------CChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc
Q 022246           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-G-------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR  170 (300)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr  170 (300)
                      .++....+.+..++.+.+.|+...++...+.+...+ |       ++....  +.+..+.++|.++|++++|++.|++||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~--~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVL--ALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHH--HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            345567788889999999999999999998887765 2       222333  788899999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHH
Q 022246          171 TRTFQLDAVPLAAGAFLCATAQ-------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI  243 (300)
Q Consensus       171 r~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  243 (300)
                      |+++...++++.+++++++++.       -.+++.+.|+++|+|.|+-||...++.+|....+.||...+.+......|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            9999999999999999777642       256788999999999999999999999999999999988888666666655


Q ss_pred             HHHHHhhhhc----cCCC----------CchHHHHHHhHHHHHHHHHHhhcCCCChhHH
Q 022246          244 LAALVAGLPL----AGNP----------LWWRTMFGLAAIPSILLALGMGLSPESPRWL  288 (300)
Q Consensus       244 ~~~~~~~~~~----~~~~----------~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~  288 (300)
                      ..|.+++-.+    ....          .=||..|.+.++.+++.+...+.+|||++..
T Consensus       194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence            5555444333    2110          1299999999888888888888899999876

>TIGR00896 CynX cyanate transporter

Probab=99.75  E-value=2.3e-17  Score=145.18  Aligned_cols=150  Identities=23%  Similarity=0.353  Sum_probs=130.8

Q ss_pred             HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHH
Q 022246          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIG  200 (300)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (300)
                      ....+.+|.+.+++|++..+.  +++.+++.+++.++.++.|+++||+|||+++..+.++.+++.+.+ ..++.+.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            456778999999999999988  999999999999999999999999999999999998888887777 77889999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-CchHHHHHHhHHHHHHH
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-LWWRTMFGLAAIPSILL  274 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~w~~~f~~~~~~~~~~  274 (300)
                      |++.|++.+...+....++.|.++ ++|++++++++.+..+|..+++.+++.+.+.. .+||+.|.+.+++.++.
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            999999999888888888899886 68999999999999999999999888876542 24999988776654443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.74  E-value=1.5e-16  Score=150.29  Aligned_cols=140  Identities=15%  Similarity=0.037  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCC
Q 022246          145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP  224 (300)
Q Consensus       145 ~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (300)
                      +...+..++.+++.++.|+++||+|||+++++++++.++++++.++.++...+++++++.|++.++.++...++++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34556668889999999999999999999999999999999999998888888888889999888889999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChh
Q 022246          225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR  286 (300)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~  286 (300)
                      +++|++++|+.++...+|.+++|++++.+...  +...+|++.+++.++++++.+++|||.+
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999877653  3567888888877777777778899764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.73  E-value=5.4e-16  Score=138.42  Aligned_cols=155  Identities=17%  Similarity=0.142  Sum_probs=127.8

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (300)
                      ...++++++|++..+.  +++.+...++..++.+++|+++||+|||+.+..+.+...+........++.+.+++.+++.+
T Consensus       239 ~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        239 MPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4456778899988777  77777777778888999999999999999888776666555555555677777888888888


Q ss_pred             HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCC
Q 022246          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPES  284 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~  284 (300)
                      ++.+...+....+..|.+|. +|+++.++++....+|..+++.+++.+.+. .+|+..|++.+++.++.++..+++||+
T Consensus       317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  393 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI-WNYHAVFWFALVMIIATLFCLLRIKDV  393 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            88777777777888999985 599999999998999999999999999876 789999999888888888777777653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.73  E-value=2.3e-16  Score=142.72  Aligned_cols=151  Identities=23%  Similarity=0.199  Sum_probs=122.0

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGR  201 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  201 (300)
                      .....++.+++|++..+.  +.+.+.+.+...++++++|+++||+ |||++++++.++.+++.++++... +...+++..
T Consensus        30 ~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l  107 (493)
T PRK15462         30 ALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSL  107 (493)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence            345567788899999888  8889999999999999999999999 999999999999999887776543 223344444


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcc--cchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~  277 (300)
                      .+.+++.|...+...++++|.+|++  +|..++++++.+.++|+.++|++.+++.+. .||++.|++.++..++..+.
T Consensus       108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-YSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHH
Confidence            4555666666677788999999976  689999999999999999999999999766 78999999877654444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.73  E-value=2.5e-16  Score=144.25  Aligned_cols=169  Identities=21%  Similarity=0.232  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-----CchHH-HHHHhHHHHHHHH
Q 022246          113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRT-FQLDAVPLAAGAF  186 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-----Grr~~-~~~~~~~~~~~~~  186 (300)
                      .+..++........+|...++.|.+.++.  +.. +.....+ ++++++|+++||+     |||+. ++.+.++.+++.+
T Consensus        21 ~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~   96 (491)
T PRK11010         21 GFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIA   96 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHH
Confidence            33444445566778888888889998887  665 3333333 5889999999999     99885 5577777777777


Q ss_pred             HHHHh---hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 022246          187 LCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM  263 (300)
Q Consensus       187 ~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~  263 (300)
                      ++++.   .+++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+...|||..
T Consensus        97 ~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~  176 (491)
T PRK11010         97 AMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGM  176 (491)
T ss_pred             HHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence            77664   468888889999999999999999999999999999999999999999999999999998887633699999


Q ss_pred             HHHhHHHHHHHHHHhhcCCCCh
Q 022246          264 FGLAAIPSILLALGMGLSPESP  285 (300)
Q Consensus       264 f~~~~~~~~~~~~~~~~~pe~~  285 (300)
                      |++.+++.++..+..+++||++
T Consensus       177 f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        177 YWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCc
Confidence            9999988777766666678764

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.73  E-value=5.6e-17  Score=139.65  Aligned_cols=177  Identities=19%  Similarity=0.169  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHH
Q 022246          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (300)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~  184 (300)
                      .+.+..+......+.....++..+.+.+++|+|++|.  +++.++..+...+..++.|.+.||+|.|++.+++.++..+-
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP   92 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP   92 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence            3333444444444455577788888999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh---hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc--
Q 022246          185 AFLCATAQ---SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--  259 (300)
Q Consensus       185 ~~~~~~~~---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--  259 (300)
                      ++..+++.   +++.+++++++.|++ |+.+++...+++.+||++++|.++|++. ..++|..+..+++..+... .+  
T Consensus        93 ~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~-~g~~  169 (417)
T COG2223          93 CLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA-FGFL  169 (417)
T ss_pred             HHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH-HhhH
Confidence            99888874   456999999999998 5668999999999999999999999999 7788887777777776655 55  


Q ss_pred             -hHHHHHHhHHHHHHHHH-HhhcCCCChh
Q 022246          260 -WRTMFGLAAIPSILLAL-GMGLSPESPR  286 (300)
Q Consensus       260 -w~~~f~~~~~~~~~~~~-~~~~~pe~~~  286 (300)
                       |+...++..+..++..+ .++++.+.|.
T Consensus       170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         170 AWRNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence             99999998888877655 4555555554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.72  E-value=2.5e-16  Score=158.21  Aligned_cols=178  Identities=16%  Similarity=0.085  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH---HhHHH
Q 022246          106 VGVACLGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL---DAVPL  181 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~---~~~~~  181 (300)
                      +...++..+...+....+..... .+..+.+.+... ..++..+++.+.++++++++|+++||+|||+++..   ..+++
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~   95 (1140)
T PRK06814         17 FWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNA-LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI   95 (1140)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence            33334444444443333333322 333333333222 23788889999999999999999999999997533   22233


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH
Q 022246          182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (300)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~  261 (300)
                      ++..+.....++++.++++|+++|++.+...+...+++.|++++++|++++|+..++..+|.++||++++++... .+|+
T Consensus        96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-~~~~  174 (1140)
T PRK06814         96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-GNFV  174 (1140)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence            333333334589999999999999999999999999999999999999999999999999999999999999876 8999


Q ss_pred             HHHHHhHHHHHHHHHHhhcCCCCh
Q 022246          262 TMFGLAAIPSILLALGMGLSPESP  285 (300)
Q Consensus       262 ~~f~~~~~~~~~~~~~~~~~pe~~  285 (300)
                      +.|++.+++.++.+++.+++|+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        175 ILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCC
Confidence            999666666666666666676653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.72  E-value=3.6e-16  Score=157.22  Aligned_cols=163  Identities=20%  Similarity=0.072  Sum_probs=128.9

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HHhhhHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATAQSVQTMIIG  200 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~  200 (300)
                      ....+.+..+++.+......+++.+++.++++++++++|+++||+|||++++++.++.+++.++.   ....+++.++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV  109 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            34556677777776666555899999999999999999999999999999998887665555443   345789999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC--------CCchHHHHHHhHHHH-
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--------PLWWRTMFGLAAIPS-  271 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~w~~~f~~~~~~~-  271 (300)
                      |++.|++.+...+...+++.|++|+++|++++++...+..+|.++++++++++...        ..+|.+.+.+.++.. 
T Consensus       110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (1146)
T PRK08633        110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA  189 (1146)
T ss_pred             HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988653        234555554444433 


Q ss_pred             HHHHHHhhcCCCChh
Q 022246          272 ILLALGMGLSPESPR  286 (300)
Q Consensus       272 ~~~~~~~~~~pe~~~  286 (300)
                      ++.+++.+++||.++
T Consensus       190 ~~~~~~~~~~~~~~~  204 (1146)
T PRK08633        190 VLGLIFAYRLPKVPA  204 (1146)
T ss_pred             HHHHHHHhcCcCCCC
Confidence            333445556677653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.72  E-value=3.3e-16  Score=140.21  Aligned_cols=156  Identities=19%  Similarity=0.153  Sum_probs=131.2

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (300)
                      ...|.+.++.|.+..+.  ++..+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+++..++.
T Consensus       241 ~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
T PRK11551        241 NWLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA  318 (406)
T ss_pred             HHHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34566667789988887  8899999999999999999999999999999887777777777677777777777788888


Q ss_pred             HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCC
Q 022246          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP  282 (300)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~p  282 (300)
                      |++.++..+....++.|.+|+++|+++.|+.+....+|..++|.+++.+.+...+|...+++.+.+.++.+++.+++.
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            988888888899999999999999999999999999999999999999987656777788777777666665555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.71  E-value=6.6e-16  Score=138.25  Aligned_cols=172  Identities=24%  Similarity=0.210  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-----CchH-HHHHHhHHHHH
Q 022246          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTR-TFQLDAVPLAA  183 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-----Grr~-~~~~~~~~~~~  183 (300)
                      +..++.+++..+.....+|.+.++.|++.++.  |++..+...  .+.++++|+++||+     |||+ +++.+.++.++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            34455666667777778888888899999999  888766665  58899999999999     8775 67788888877


Q ss_pred             HHHHHHHh---hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246          184 GAFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (300)
Q Consensus       184 ~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w  260 (300)
                      +..++++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+...||
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence            77777776   357777778788888888888999999999999999999999999999999999999888887643589


Q ss_pred             HHHHHHhHHHHHHHHHHhhcCCCCh
Q 022246          261 RTMFGLAAIPSILLALGMGLSPESP  285 (300)
Q Consensus       261 ~~~f~~~~~~~~~~~~~~~~~pe~~  285 (300)
                      |..|++.+++.++..+..+++||++
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999998888776666556677654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.71  E-value=1.5e-15  Score=135.59  Aligned_cols=164  Identities=14%  Similarity=0.104  Sum_probs=121.7

Q ss_pred             HHHHhhhh-hHHHHHHHhCCChhhhHHHHHHHHH-HHHHHHHHhhhhhhccccCchHHH-HHHhHHHHHHHHHHHHhhhH
Q 022246          118 YHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSL-LAGATVGSFTGGSLADKFGRTRTF-QLDAVPLAAGAFLCATAQSV  194 (300)
Q Consensus       118 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~-~i~~~i~~~~~g~lsd~~Grr~~~-~~~~~~~~~~~~~~~~~~~~  194 (300)
                      .......+ ..+++.+++|.+..+.  |++.+.. .++..++++++++ +||+|||+.+ +.+.++.+++.++.++++++
T Consensus        29 ~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  105 (393)
T PRK15011         29 IAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNY  105 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHH
Confidence            33334444 4446788999999888  8887655 4466666666666 9999999875 45566666777788888999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccc--hhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246          195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  272 (300)
                      +.+++.+.+.|...+...+....++.|+.+++.|  +...++...+..+|.+++|.+++.+.+. .|||+.|++.++..+
T Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-~gw~~~f~~~~~~~~  184 (393)
T PRK15011        106 FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-FSFTVMYLSAAVAFI  184 (393)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cChHHHHHHHHHHHH
Confidence            9887666555555556677888888888776655  3445788888999999999999999765 799999999988776


Q ss_pred             HHHHH-hhcCCCCh
Q 022246          273 LLALG-MGLSPESP  285 (300)
Q Consensus       273 ~~~~~-~~~~pe~~  285 (300)
                      +..+. ++++||.+
T Consensus       185 ~~~~~~~~~~~~~~  198 (393)
T PRK15011        185 VCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHhhcCccC
Confidence            66554 45567754

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.70  E-value=1.5e-16  Score=120.27  Aligned_cols=135  Identities=27%  Similarity=0.342  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCccc
Q 022246          148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI  227 (300)
Q Consensus       148 ~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  227 (300)
                      +.+.++..++.++.|++.||+|||+.+..+..+..++.++....++++.+++.+++.|++.+...+....++.|.+|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            44567788899999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh-cCCC
Q 022246          228 RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPE  283 (300)
Q Consensus       228 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~pe  283 (300)
                      |+++.++......+|..+++.+++.+.+. .+|++.|++.+++.++..+..+ +.||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999998765 7899999998887766655444 4455

>TIGR00889 2A0110 nucleoside transporter

Probab=99.69  E-value=6.7e-16  Score=138.81  Aligned_cols=145  Identities=15%  Similarity=0.106  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh----hHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ----SVQTMIIGRVLAGIGIGISSAIVPLYI  219 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~  219 (300)
                      +...++..++..++.++.|+++||+|||++++.+.++.++...+.....    +++.+++.+++.|++.+...+....++
T Consensus       254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i  333 (418)
T TIGR00889       254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFV  333 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888889999999999999999999999999999888876666532    245667788999999988888889999


Q ss_pred             hccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCCC-----CchHHHHHHhHHHHHHHHH-HhhcCCCChhHH
Q 022246          220 SEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNP-----LWWRTMFGLAAIPSILLAL-GMGLSPESPRWL  288 (300)
Q Consensus       220 ~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~-----~~w~~~f~~~~~~~~~~~~-~~~~~pe~~~~~  288 (300)
                      .|.+|+++|++++|+.+ ....+|.++||+++|.+.+..     .||++.|.+.+++.+++.+ .+++++|+++..
T Consensus       334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            99999999999999997 667899999999999987642     4699999988888766554 556678775443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.68  E-value=8e-16  Score=138.47  Aligned_cols=149  Identities=12%  Similarity=0.049  Sum_probs=124.9

Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 022246          135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAI  214 (300)
Q Consensus       135 ~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  214 (300)
                      +.+....  +++.++..++..++.+++|+++||+|+|+.+..+.++.++..++.++.++.+.+++.+++.|++.+...+.
T Consensus       258 ~~~~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        258 EQGTRVF--GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             CcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            4554455  88889899999999999999999999999999999999998888888889999999999999988887788


Q ss_pred             hhhhhhccCCcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-HhhcCCCChh
Q 022246          215 VPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GMGLSPESPR  286 (300)
Q Consensus       215 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~pe~~~  286 (300)
                      ...++.|.+|++.|++..+. ++....+|.++++.+.|.+.+. .||+..|++.+++.++..+ ..+++++.++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~  408 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-IGFQGTYLILGGIVLLFTLISVFTLSGDRE  408 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            88899999999999887665 6777889999999999999876 7899999998887766554 3444555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.68  E-value=1.8e-15  Score=134.48  Aligned_cols=163  Identities=13%  Similarity=0.059  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH-HHHHHH-HH
Q 022246          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV-PLAAGA-FL  187 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~-~~~~~~-~~  187 (300)
                      .+..+..++..++..+++|.+.+++|.+..+.  +++.+++.++..++++++|+++||+||++....... ...+.. ..
T Consensus        10 ~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~   87 (382)
T TIGR00902        10 ALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF   87 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            34455555666788888999999999999999  999999999999999999999999998554322211 111121 23


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHh
Q 022246          188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA  267 (300)
Q Consensus       188 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~  267 (300)
                      +..+++++.+++.|+++|.+.+...+...++..+.  .++|++++|....+..+|.+++|++++.+.+. .|||+.|++.
T Consensus        88 ~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-~g~~~~f~~~  164 (382)
T TIGR00902        88 SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-FDEQNILAIL  164 (382)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-cChhHHHHHH
Confidence            44678899999999999998888888888877654  47789999999999999999999999999876 8999999887


Q ss_pred             HHHHHHHHHH
Q 022246          268 AIPSILLALG  277 (300)
Q Consensus       268 ~~~~~~~~~~  277 (300)
                      +++.++.++.
T Consensus       165 ~~~~~~~~~~  174 (382)
T TIGR00902       165 TAGLAFMLIG  174 (382)
T ss_pred             HHHHHHHHHH
Confidence            6654333333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=6.4e-17  Score=137.81  Aligned_cols=144  Identities=19%  Similarity=0.170  Sum_probs=132.9

Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 022246          135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAI  214 (300)
Q Consensus       135 ~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  214 (300)
                      +-++.+.  |++.+...+.+.+.+++.|.+.||+|+|..+++|++++...++++++..++++++++|.++|+|.++....
T Consensus       102 ~~e~~~i--G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  102 DRENTQI--GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             cccccch--hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            3344555  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCcc-cchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246          215 VPLYISEISPTE-IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (300)
Q Consensus       215 ~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~  281 (300)
                      ..++++|.||.+ +|+.++|+.-.+..+|..+||.+||.+.+. .|.+..|.+.++++++-..+.+++
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHHHHHHHHHHHHHHHHhe
Confidence            999999999986 479999999999999999999999999887 899999999999998876665554

>TIGR00901 2A0125 AmpG-related permease

Probab=99.68  E-value=1.2e-15  Score=134.29  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=127.7

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-----CchHHH-HHHhHHHHHHHHHHHHh---h
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRTF-QLDAVPLAAGAFLCATA---Q  192 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-----Grr~~~-~~~~~~~~~~~~~~~~~---~  192 (300)
                      .+++..|.+.+++|++.++.  ++.... .+...+ .+++|+++||+     ||||.+ +.+.++.++...+.++.   .
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            55668899999999999988  777655 444444 89999999998     898874 56777777776677666   4


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc--------hHHHH
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--------WRTMF  264 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------w~~~f  264 (300)
                      +.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+... .+        ||+.|
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-EFANTGLITLWGYIF  160 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccHHHH
Confidence            5666777778888888888899999999999999999999999999999999999999888765 55        99999


Q ss_pred             HHhHHHHHHHHHHhhc-CCCC
Q 022246          265 GLAAIPSILLALGMGL-SPES  284 (300)
Q Consensus       265 ~~~~~~~~~~~~~~~~-~pe~  284 (300)
                      ++.+++.++..+..++ .||+
T Consensus       161 ~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       161 FWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHhccCC
Confidence            9999887776655443 5664

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.67  E-value=1.9e-15  Score=134.43  Aligned_cols=165  Identities=13%  Similarity=0.051  Sum_probs=127.4

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch----HHHHHHhHHHHHHHHHH
Q 022246          113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT----RTFQLDAVPLAAGAFLC  188 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr----~~~~~~~~~~~~~~~~~  188 (300)
                      ++......+.+.+.+|.+.+++|.+..+.  |+..+++.++..++++++|+++||+|||    +.+.+...+  ......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHH
Confidence            33444445677788888889999999998  9999999999999999999999999984    332222221  122233


Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246          189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (300)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~  268 (300)
                      ...++++.+++.|++.|++.+...+...+++.++  .++|+++.+.......+|..++|++++.+.+. .|||..|++.+
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-~g~~~~f~~~~  165 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-FGEQAILWILT  165 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-cChhHHHHHHH
Confidence            4457899999999999999888888877777776  45688888998888999999999999999876 79999999888


Q ss_pred             HHHHHHHHHhhcCCCC
Q 022246          269 IPSILLALGMGLSPES  284 (300)
Q Consensus       269 ~~~~~~~~~~~~~pe~  284 (300)
                      +..++..+..++.||.
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        166 AGVASMLLGQLLRPTI  181 (382)
T ss_pred             HHHHHHHHHHHccCCC
Confidence            7655555444555654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.67  E-value=8.6e-15  Score=129.47  Aligned_cols=154  Identities=21%  Similarity=0.229  Sum_probs=128.1

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (300)
                      ...++.+++|.++.+.  +++.....+...++.++.|++.||+|||+++..+.++..+..+.....++.+.+++.+++.|
T Consensus       222 ~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  299 (375)
T TIGR00899       222 MPLLIIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNA  299 (375)
T ss_pred             hHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456678899988877  77777777777788899999999999999988887776666666666778888888889999


Q ss_pred             HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE  283 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe  283 (300)
                      ++.+...+....++.|..|+ +++.++++++....+|..++|.+++.+.+. .||+..|++.+++.++..+..++++|
T Consensus       300 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       300 IFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER-WSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHheecC
Confidence            99888888888899999875 567999999999999999999999998776 78999999999888877777666654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09952 shikimate transporter; Provisional

Probab=99.66  E-value=7.4e-15  Score=132.92  Aligned_cols=160  Identities=18%  Similarity=0.104  Sum_probs=118.4

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH---h-hhHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---A-QSVQTMII  199 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~  199 (300)
                      .+.++++.+++|++....  ..+..+..+...++.+++|+++||+|||++++.+.++.+++.+.+..   . ++...+++
T Consensus       271 ~~~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T PRK09952        271 AFALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF  348 (438)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            445567778889887654  44555566667788899999999999999988877665554433322   1 23444445


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHHHHH
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~  277 (300)
                      ..++.+++.+...+..++++.|.+|++.|+.+.++.+ .+..+|+.++|.+.+.+.+. ..+|+..+.+.+++.++.++.
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~  428 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            5667788888888888999999999999998888844 44568899999999988763 245888888888887777777


Q ss_pred             hhcCCCCh
Q 022246          278 MGLSPESP  285 (300)
Q Consensus       278 ~~~~pe~~  285 (300)
                      .+.++|+.
T Consensus       429 ~~~~~~~~  436 (438)
T PRK09952        429 ALLMKDNQ  436 (438)
T ss_pred             HHHccccc
Confidence            66677643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.66  E-value=6.5e-15  Score=131.62  Aligned_cols=155  Identities=16%  Similarity=0.115  Sum_probs=127.9

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (300)
                      ..+.+..+.|.+  ..  ++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++....++.+.+++..++.|
T Consensus       238 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  313 (399)
T PRK05122        238 FITLYYAARGWD--GA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHcccc--cc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            334334455653  33  56677888888999999999999999999999988888888888888888888888899999


Q ss_pred             HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCCh
Q 022246          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESP  285 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~  285 (300)
                      ++.+..++.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+. .||++.|++.+++.++..+..+++++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-FGYPSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999988888888888999999999999999999999998888888888766 7899999998888877766655555433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.66  E-value=2.3e-15  Score=132.71  Aligned_cols=146  Identities=15%  Similarity=0.041  Sum_probs=122.9

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhH--HHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVL  203 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l  203 (300)
                      ..+.+.+++|.+..+.  ++..+++.++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.  ..+++..++
T Consensus       227 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       227 LYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            3444567788887777  888999999999999999999999999999999988888888777666533  334456678


Q ss_pred             HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHH
Q 022246          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL  274 (300)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~  274 (300)
                      .|++.+...+....++.|.+|+++|+++.|+.+....+|..++|++.+.+.+. .||++.|++.+++.++.
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-IGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHh
Confidence            88888888888888999999999999999999999999999999999998876 78999999888776654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.66  E-value=6.5e-16  Score=140.70  Aligned_cols=177  Identities=17%  Similarity=0.135  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (300)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~  181 (300)
                      -|.+++..++......-....+..+.+.++++++.+..+.  +|+.++......+..++.+.+.||+|.|++.+.|.++.
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~  121 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVA  121 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHH
Confidence            3555555555555544444555668899999999998887  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246          182 AAGAFLCATAQSVQTMIIGR-VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (300)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w  260 (300)
                      +++.++.+++++++.+++.. ++.|+|.+..+.....++..+|. ++|+.+.|+...+..+|.++-|.+.-.+.+. .||
T Consensus       122 ~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~-~G~  199 (509)
T KOG2504|consen  122 ALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSK-YGW  199 (509)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHH-hCc
Confidence            99999999999999988776 89999999999999999997775 6699999999999999998888888788776 899


Q ss_pred             HHHHHHhHHHHHHHHHHhhcCC
Q 022246          261 RTMFGLAAIPSILLALGMGLSP  282 (300)
Q Consensus       261 ~~~f~~~~~~~~~~~~~~~~~p  282 (300)
                      |+.+++.+.+.+-+.+..+.++
T Consensus       200 r~~~l~~~~~~l~~~~~~~~~r  221 (509)
T KOG2504|consen  200 RGALLIFGGISLNVLVAGALLR  221 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999888876666555543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.66  E-value=8.5e-15  Score=127.74  Aligned_cols=159  Identities=25%  Similarity=0.335  Sum_probs=140.3

Q ss_pred             HHhhhhhHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchH-HHHHHhHHHHHHHHHHHHhhhHHHH
Q 022246          120 LGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-TFQLDAVPLAAGAFLCATAQSVQTM  197 (300)
Q Consensus       120 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l  197 (300)
                      ........+.+.++ +|.+..+.  ++..+...++..++.++++++.||+|||+ .+..+.++..++.++....++.+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  268 (352)
T cd06174         191 YYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL  268 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            33444455544444 48888887  89999999999999999999999999999 9999999999999999998888889


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~  277 (300)
                      ++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+. .+|++.|++.+++.++..+.
T Consensus       269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGGVFLILAALALLAALL  347 (352)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999876 88999999999998887776


Q ss_pred             hhcC
Q 022246          278 MGLS  281 (300)
Q Consensus       278 ~~~~  281 (300)
                      .+++
T Consensus       348 ~~~~  351 (352)
T cd06174         348 LLLL  351 (352)
T ss_pred             heec
Confidence            6554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.66  E-value=5.3e-15  Score=134.99  Aligned_cols=155  Identities=17%  Similarity=0.092  Sum_probs=117.3

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH--HHHHhhhHHHHHHHHH
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF--LCATAQSVQTMIIGRV  202 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~  202 (300)
                      +.+.++++++|++..+.  ++..+...++..++.+++|+++||+|||+.++....+..++..  ......+...+.++++
T Consensus       280 ~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (467)
T PRK09556        280 WSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF  357 (467)
T ss_pred             HHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34557788899998888  8888999999999999999999999999877665444433322  2223346666667788


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCC-----------CCchHHHHHHhHHH
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGN-----------PLWWRTMFGLAAIP  270 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-----------~~~w~~~f~~~~~~  270 (300)
                      +.|++..+........+.|.+|++.||++.|+.+....+ |..++|.+.|.+.+.           ..+|+..|++.+++
T Consensus       358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~  437 (467)
T PRK09556        358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA  437 (467)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence            888655444444446777999999999999999988886 778999999998871           26799999998777


Q ss_pred             HHHHHHHhhcC
Q 022246          271 SILLALGMGLS  281 (300)
Q Consensus       271 ~~~~~~~~~~~  281 (300)
                      .+++.+..+++
T Consensus       438 ~~~~~~~~~~~  448 (467)
T PRK09556        438 AIGCICLMAIV  448 (467)
T ss_pred             HHHHHHHHHHH
Confidence            77766555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.66  E-value=8.1e-15  Score=130.94  Aligned_cols=166  Identities=16%  Similarity=0.147  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---
Q 022246          113 AILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---  188 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---  188 (300)
                      .++.+.....+.+..+ ++.+++|.+..+.  +++.+++.++..++++++|+++||+|||+.++.+.+..++.....   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~   88 (396)
T TIGR00882        11 FFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIY   88 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445555544 6677899999988  999999999999999999999999999999988766665443322   


Q ss_pred             HHh-----hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 022246          189 ATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM  263 (300)
Q Consensus       189 ~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~  263 (300)
                      .+.     .....+++.+++.|++.+...+....+..|..  ++++..++.......+|.+++|.+++.+.+  .+|++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--~~~~~~  164 (396)
T TIGR00882        89 VFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS--IDPQIV  164 (396)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc--cCchHH
Confidence            111     12334566678888888777777777776653  334567777778888999999999988754  689999


Q ss_pred             HHHhHHHHHHHHHHhhc-CCCC
Q 022246          264 FGLAAIPSILLALGMGL-SPES  284 (300)
Q Consensus       264 f~~~~~~~~~~~~~~~~-~pe~  284 (300)
                      |++.+++.++..++.++ .||.
T Consensus       165 f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       165 FWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC
Confidence            99998888776655544 4554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.63  E-value=5e-15  Score=136.37  Aligned_cols=164  Identities=18%  Similarity=0.092  Sum_probs=111.3

Q ss_pred             hhhHHHHHHHhCCChhhhH---------HH-HHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh
Q 022246          124 NGALEYLAKDLGIAENTVL---------QG-WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS  193 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~---------~~-~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~  193 (300)
                      ....|.+.++.|++.....         .. ....+..++..++.+++++++||+|||++++++.++.+++.++.++..+
T Consensus       308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~  387 (502)
T TIGR00887       308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN  387 (502)
T ss_pred             ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3346666678888654210         00 1233344556668889999999999999998888777776665554321


Q ss_pred             ----HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC---------CCch
Q 022246          194 ----VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN---------PLWW  260 (300)
Q Consensus       194 ----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~w  260 (300)
                          ...+...-++..++..+..+..+.+.+|.+|++.|+++.++.+....+|.+++|.+.+.+.+.         ..++
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  467 (502)
T TIGR00887       388 HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWM  467 (502)
T ss_pred             hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccc
Confidence                111111112222222334566778889999999999999999999999999999999888763         1345


Q ss_pred             HHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246          261 RTMFGLAAIPSILLALGMGLSPESPRW  287 (300)
Q Consensus       261 ~~~f~~~~~~~~~~~~~~~~~pe~~~~  287 (300)
                      ...|++.+++.++..++++++|||++.
T Consensus       468 ~~~~~i~~~~~~~~~i~~~~lpEt~~~  494 (502)
T TIGR00887       468 GHVLEIFALFMFLGILFTLLIPETKGK  494 (502)
T ss_pred             hHHHHHHHHHHHHHHHHheEeccCCCC
Confidence            667777777777766666778998753

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.62  E-value=2.9e-14  Score=128.41  Aligned_cols=155  Identities=15%  Similarity=0.047  Sum_probs=104.1

Q ss_pred             hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH---HhhhHH-HHH
Q 022246          123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---TAQSVQ-TMI  198 (300)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~---~~~~~~-~l~  198 (300)
                      ......++.+++|++..+.  |++.+++.++..++++++|+++||+|||++++++..+.+++.....   ..+... ..+
T Consensus        30 ~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (420)
T PRK09528         30 FSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNIL  107 (420)
T ss_pred             HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445557777899999988  9999999999999999999999999999999887666554433221   111111 011


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCC--cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          199 IGRVLAGIGIGISSAIVPLYISEISP--TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      ...++.++..+.........+.++.+  .++++..++.......+|..++|++++.+.+  .+|++.|++.+++.++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~f~~~~~~~~~~~~  185 (420)
T PRK09528        108 LGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN--INPQINFWLGSGSALILLV  185 (420)
T ss_pred             HHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh--cCchHhHHHHHHHHHHHHH
Confidence            11222233223222222222222222  2456778888888889999999999998864  5799999998888776666


Q ss_pred             HhhcC
Q 022246          277 GMGLS  281 (300)
Q Consensus       277 ~~~~~  281 (300)
                      .++++
T Consensus       186 ~~~~~  190 (420)
T PRK09528        186 LLFFA  190 (420)
T ss_pred             HHhcc
Confidence            55554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.62  E-value=2.6e-14  Score=126.58  Aligned_cols=150  Identities=19%  Similarity=0.170  Sum_probs=109.9

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchH--HHHH------HhHHHHHHHHHHHHhhhHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR--TFQL------DAVPLAAGAFLCATAQSVQTM  197 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~--~~~~------~~~~~~~~~~~~~~~~~~~~l  197 (300)
                      ...++.+++|.+..+.  +++.+...++..++.+++|+++||+|||+  ....      +.++.++..+.....++.+..
T Consensus       238 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (399)
T TIGR00893       238 FPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA  315 (399)
T ss_pred             HHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            4456677889988877  88899999999999999999999999996  1111      111111111111222344444


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHhHHHHHHHHH
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLAL  276 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~  276 (300)
                      +...++.+++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .+ |++.|++.+++.++..+
T Consensus       316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~  393 (399)
T TIGR00893       316 LALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-TGSFAGALMVVAALALIGAL  393 (399)
T ss_pred             HHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC-CCchhHHHHHHHHHHHHHHH
Confidence            444444444444 7888999999999999999999999999999999999999999876 56 99999998888776655


Q ss_pred             Hhh
Q 022246          277 GMG  279 (300)
Q Consensus       277 ~~~  279 (300)
                      ..+
T Consensus       394 ~~~  396 (399)
T TIGR00893       394 SYL  396 (399)
T ss_pred             HHH
Confidence            443

>PRK03699 putative transporter; Provisional

Probab=99.62  E-value=3e-14  Score=127.23  Aligned_cols=159  Identities=13%  Similarity=0.054  Sum_probs=130.1

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  203 (300)
                      .+..+++.+++|++..+.  +++.+.+.++..++.+++|+++||+|||+++.....+.++..++....++...+.+..++
T Consensus       226 ~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (394)
T PRK03699        226 SWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG  303 (394)
T ss_pred             HHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            445556778889998888  899999999999999999999999999999988877777766666667777777777788


Q ss_pred             HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE  283 (300)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe  283 (300)
                      .|++.++.++....+..+..| +.++...++......+|..++|.+.+.+.+. .||+..+++.+++.+++.+...++++
T Consensus       304 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        304 LGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH-FGLQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-hCchhhhhhhHHHHHHHHHHHHHHHH
Confidence            899888888888888888776 4467888888888899999999999999876 78999999988887777666555554


Q ss_pred             Chh
Q 022246          284 SPR  286 (300)
Q Consensus       284 ~~~  286 (300)
                      ..|
T Consensus       382 ~~~  384 (394)
T PRK03699        382 VSK  384 (394)
T ss_pred             HHH
Confidence            433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.62  E-value=1.2e-14  Score=128.97  Aligned_cols=145  Identities=20%  Similarity=0.131  Sum_probs=112.5

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH--HHHHH--hhhHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA--FLCAT--AQSVQTMIIGR  201 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~~  201 (300)
                      ...++++++|.+..+.  ++......++..++.+++|+++||+|||+.+..+..+..+..  +....  ..+.+.+++..
T Consensus       242 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (394)
T TIGR00883       242 LPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLV  319 (394)
T ss_pred             HHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            4445667889988877  888888999999999999999999999998775554444333  22222  24566666777


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  272 (300)
                      ++.|++.+...+....++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.+....|++.++...+..+
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            888998888899999999999999999999998 45666788899999999998763338887777665444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK12382 putative transporter; Provisional

Probab=99.62  E-value=4e-14  Score=126.26  Aligned_cols=150  Identities=17%  Similarity=0.171  Sum_probs=126.1

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (300)
                      ..+.+.++.+.+.  .  ++....+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|
T Consensus       238 ~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  313 (392)
T PRK12382        238 FVSLYFASKGWAM--A--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHHhcCCch--h--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            4444445566643  3  55666777888899999999999999999999998888888888878888888888899999


Q ss_pred             HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      ++.+...+.....+.|.+|+++||++.++++....+|..++|.+.+.+.+. .||++.|++.+++.++..+..++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-FGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHh
Confidence            999888888888999999999999999999999999999999999999876 78999999998888776655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.61  E-value=1.4e-14  Score=131.71  Aligned_cols=173  Identities=13%  Similarity=0.003  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH
Q 022246          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA  189 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~  189 (300)
                      ++..+.............+++.+++|.+..+.  ++......++..++.+++|+++||+|||+.+..+.++.+++.++.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHHHHHHhCCeehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            33333333333344557788888999988766  7888888899999999999999999999999988887777766665


Q ss_pred             Hh-----h------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 022246          190 TA-----Q------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL  258 (300)
Q Consensus       190 ~~-----~------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  258 (300)
                      +.     +      +...++...++.+....+..+....++.|.+|+++|++++++.+....+|.+++|.+.+.+.+. .
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-~  446 (481)
T TIGR00879       368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES-I  446 (481)
T ss_pred             HHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            21     1      2223333333333333334466677889999999999999999999999999999999988766 7


Q ss_pred             chHHHHHHhHHHHHHHHHHh-hcCCCCh
Q 022246          259 WWRTMFGLAAIPSILLALGM-GLSPESP  285 (300)
Q Consensus       259 ~w~~~f~~~~~~~~~~~~~~-~~~pe~~  285 (300)
                      +|++.|++.++++++.+++. ++.||++
T Consensus       447 ~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       447 GVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             CccceehhHHHHHHHHHHHHheecccCC
Confidence            89999999888887766654 4567765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03545 putative arabinose transporter; Provisional

Probab=99.61  E-value=9.8e-14  Score=123.71  Aligned_cols=152  Identities=14%  Similarity=0.092  Sum_probs=121.8

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH-HHHHHhhhHHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA-FLCATAQSVQTMIIGRV  202 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~  202 (300)
                      .+..+++.+.+|.+....  +++.+...++..++.++.|+++||+|||.+++. ..+..++. ++....++.+.++++.+
T Consensus       226 ~~~~~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~  302 (390)
T PRK03545        226 SYIEPFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSI  302 (390)
T ss_pred             HHHHHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            445667777789988877  888899999999999999999999998875444 34333433 33445677778888888


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      +.|++.+...+.....+.+..| +.|++++|+++....+|..+||+++|.+.+. .|++..|++.+++.++..+...+
T Consensus       303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-LGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHH
Confidence            9999887777777788888876 6789999999999999999999999999877 89999999999888776654433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.60  E-value=2.6e-14  Score=129.96  Aligned_cols=150  Identities=15%  Similarity=0.133  Sum_probs=121.6

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--CchHHHHH--HhHHHHHHHHHHHHhhhHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQL--DAVPLAAGAFLCATAQSVQTMIIGR  201 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Grr~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~  201 (300)
                      .++.+.+++|++....  +++.++..++..++.+++|+++||.  ++|+...+  +.++.+++.+++...++++.+++.+
T Consensus       263 ~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~  340 (455)
T TIGR00892       263 FLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC  340 (455)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            4444456789988887  8999999999999999999999984  34433333  3344445555666778888888899


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~  277 (300)
                      ++.|++.+...+....++.|.+|++++++++++++....+|.+++|.+++.+.+...+|++.|++.+++.++..+.
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            9999999998899999999999999999999999999999999999999999876447999999988877665543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.60  E-value=7.9e-14  Score=125.42  Aligned_cols=158  Identities=15%  Similarity=0.051  Sum_probs=131.7

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (300)
                      ...++.+.+|.+....  +++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.++++.++.|
T Consensus       246 ~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (417)
T PRK10489        246 YPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG  323 (417)
T ss_pred             hHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            3345555589988777  89999999999999999999999988888888888888888888888888887788888999


Q ss_pred             HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH-HHHHhhcCCCC
Q 022246          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL-LALGMGLSPES  284 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~pe~  284 (300)
                      ++.+...+...+++.|.+|++.||+++|+++....+|..+++.+.|.+.+. .|++..+++.++..++ ..+..+.+++.
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-MTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            988877778888999999999999999999999999999999999999876 7788888776665544 45555667776


Q ss_pred             hh
Q 022246          285 PR  286 (300)
Q Consensus       285 ~~  286 (300)
                      ++
T Consensus       403 ~~  404 (417)
T PRK10489        403 RR  404 (417)
T ss_pred             cc
Confidence            64

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.59  E-value=1.5e-13  Score=122.13  Aligned_cols=148  Identities=11%  Similarity=0.035  Sum_probs=127.7

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (300)
                      ..+++ +++|.+....  +++.++..++..++.++.+++.||+|+|+.+.++.++.++..++.++.++.+.+++..++.|
T Consensus       228 ~~~~l-~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g  304 (382)
T TIGR00902       228 SAIYW-QAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC  304 (382)
T ss_pred             HHHHH-HHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence            44444 5699998888  88888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhhhccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~  279 (300)
                      +..+...+....++.+. |+++|+++.++++ ....+|.+++++++|.+.+. .|+ ..|++.+++.++..++++
T Consensus       305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-~g~-~~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-LGA-GTFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999998 9899999999976 56789999999999999887 676 556666666665554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.59  E-value=1.5e-13  Score=122.67  Aligned_cols=159  Identities=16%  Similarity=0.105  Sum_probs=122.0

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVLA  204 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~  204 (300)
                      ..|.+.+++|.+..+.  ++..+++.++..++.+++|++.||+|||+.+..+..+.+++.++....+ +...+  ..++.
T Consensus       227 ~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~  302 (393)
T PRK09705        227 WLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVC  302 (393)
T ss_pred             HHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHH
Confidence            4444445689998888  8999999999999999999999999999999888877777666544323 22222  23456


Q ss_pred             HHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH-HhhcCC
Q 022246          205 GIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GMGLSP  282 (300)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~p  282 (300)
                      |++.+..++.......+.++ +++|++..++.+....++..++|.+.+++.+...+|...|++.+++.++..+ ..++.|
T Consensus       303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            78877777877777777775 5788999999999999999999999999988645688888888777766554 455668


Q ss_pred             CChhHH
Q 022246          283 ESPRWL  288 (300)
Q Consensus       283 e~~~~~  288 (300)
                      |++...
T Consensus       383 ~~~~~~  388 (393)
T PRK09705        383 ARFPQL  388 (393)
T ss_pred             ccccch
Confidence            876543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.59  E-value=5.7e-14  Score=127.66  Aligned_cols=162  Identities=17%  Similarity=0.127  Sum_probs=109.7

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--CchHHH-HHHhHHHHHHHHHHHH--hhhHHH
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLAAGAFLCAT--AQSVQT  196 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Grr~~~-~~~~~~~~~~~~~~~~--~~~~~~  196 (300)
                      ...+.+.++++++|++..+.  ++...++.++..++.+++|+++||+  |||+.. +....+..++.++...  ..+...
T Consensus       272 ~~~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (452)
T PRK11273        272 ILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV  349 (452)
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence            33445566777789987777  7888888899999999999999999  555432 2222333333322222  234444


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHH-HHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL-AALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  275 (300)
                      ++++.++.|.+..+.......+..|.+|++.||++.|+.+....+|+. ++|.+.+.+.+. .||++.|++.++++++++
T Consensus       350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~-~g~~~~f~~~~~~~~~~~  428 (452)
T PRK11273        350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAV  428 (452)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-hcchHHHHHHHHHHHHHH
Confidence            444555555544333333445678999999999999999888888765 479999888876 789999998888777665


Q ss_pred             HHhh--cCCCChh
Q 022246          276 LGMG--LSPESPR  286 (300)
Q Consensus       276 ~~~~--~~pe~~~  286 (300)
                      +...  ..+|+++
T Consensus       429 ~~~~~~~~~~~~~  441 (452)
T PRK11273        429 ILLIVVMIGEKRH  441 (452)
T ss_pred             HHHHHHhccccch
Confidence            5433  3455443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.58  E-value=1.2e-13  Score=118.59  Aligned_cols=176  Identities=18%  Similarity=0.173  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~  186 (300)
                      ..++...++.++........+|.+++.|+++..++  +++...++.++.++.++.|++.+|+|+|+-++.|+.+++++++
T Consensus        16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            34444555566666777889999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHH---HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-------
Q 022246          187 LCA---TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-------  256 (300)
Q Consensus       187 ~~~---~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------  256 (300)
                      +..   ...++..+++..|+.|.|.+...+..+.+++.+.+++.-...+.+.+..+.+|.+++|++++.+...       
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~  173 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS  173 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence            885   4568889999999999999999999999999999998889999999999999999999999887651       


Q ss_pred             -----------CCchHHHHHHhHHHHHHHHHHhhc--CCCC
Q 022246          257 -----------PLWWRTMFGLAAIPSILLALGMGL--SPES  284 (300)
Q Consensus       257 -----------~~~w~~~f~~~~~~~~~~~~~~~~--~pe~  284 (300)
                                 ...|++.|...+...+++.+....  +|+.
T Consensus       174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~  214 (422)
T COG0738         174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDL  214 (422)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcC
Confidence                       124788888888777666665544  3543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.57  E-value=7.9e-14  Score=124.83  Aligned_cols=136  Identities=21%  Similarity=0.154  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  223 (300)
                      +.+.++..++..++.+++|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+....++.+..
T Consensus       261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  340 (408)
T PRK09874        261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS  340 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence            55666777888889999999999999999999988888877777777788888888999999999999999999999999


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       224 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      |+++||+.++++.....+|..++|.+++.+.+. .+|++.|++.+++.++..+..++
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-YGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876 78999999999888776665544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.57  E-value=9.8e-14  Score=126.96  Aligned_cols=164  Identities=18%  Similarity=0.094  Sum_probs=119.7

Q ss_pred             HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hH--HH
Q 022246          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SV--QT  196 (300)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~--~~  196 (300)
                      ....+..|++.+++|.+....  .+......++.+++.+++|+++||+|||++++.+.++.+++.++++...  +.  ..
T Consensus       288 ~~~~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~  365 (479)
T PRK10077        288 NVVLYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV  365 (479)
T ss_pred             hHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH
Confidence            344556788888899887666  5666777788889999999999999999999999998888877765431  21  12


Q ss_pred             HHHHHHHHHHhhhh-hhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc------CCCCchHHHHHHhHH
Q 022246          197 MIIGRVLAGIGIGI-SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA------GNPLWWRTMFGLAAI  269 (300)
Q Consensus       197 l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~w~~~f~~~~~  269 (300)
                      .+.+.++.+++.+. ..+..+.++.|.+|+++|++++|+.+....+|.++++.+.+.+.      +. .+|++.|++.++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~  444 (479)
T PRK10077        366 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH-FHNGFSYWIYGC  444 (479)
T ss_pred             HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh-ccCccHHHHHHH
Confidence            22233344444333 23667899999999999999999999999888888866655433      33 678888988887


Q ss_pred             HHHHHHHHh-hcCCCChhH
Q 022246          270 PSILLALGM-GLSPESPRW  287 (300)
Q Consensus       270 ~~~~~~~~~-~~~pe~~~~  287 (300)
                      +.++.+++. ++.||+++.
T Consensus       445 ~~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        445 MGVLAALFMWKFVPETKGK  463 (479)
T ss_pred             HHHHHHHHHHhccccCCCC
Confidence            776665544 456887643

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.57  E-value=4.4e-14  Score=126.03  Aligned_cols=141  Identities=25%  Similarity=0.223  Sum_probs=114.8

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH-HHHHhhhHHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF-LCATAQSVQTMIIGRV  202 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~  202 (300)
                      ....+++.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.+..+.++.++..+ ......+.+.+.+..+
T Consensus       259 ~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF  336 (405)
T ss_pred             hhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            345567778899998888  8899999999999999999999999999998887766533333 3334456666666667


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHh
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLA  267 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~  267 (300)
                      +.|++.++..+....++.|.+|+++|++++|+.+....+|..++|++++.+.+. .| |+..++..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~g~~~~~~~~~  401 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-LDEYGTALASL  401 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHhh
Confidence            777777777788889999999999999999999999999999999999999886 55 87766653

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.56  E-value=3e-13  Score=120.21  Aligned_cols=150  Identities=17%  Similarity=0.179  Sum_probs=120.6

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (300)
                      .+|.+.++.|.+....  ++..+...++..+++++.|+++||+|+|+++..+.++..++.+...  . ....+...++.|
T Consensus       222 ~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g  296 (381)
T PRK03633        222 LMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence            4566666789888777  8888899999999999999999999999999888777776655433  2 233445667778


Q ss_pred             HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~  281 (300)
                      ++.+...+.....+.|..|+++++...+.++....+|..++|.++|.+.+. .+|++.|++.+.+.++..+..+..
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-YSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHhc
Confidence            877777899999999999988888888888888999999999999999876 789999999888777665554443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=5.5e-14  Score=121.33  Aligned_cols=171  Identities=20%  Similarity=0.180  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHHH-hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--CchHHH-HHHhHHHH
Q 022246          107 GVACLGAILFGYHLG-VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLA  182 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Grr~~~-~~~~~~~~  182 (300)
                      ..+++..++.+.... +..+.+.|+.|..|++..++  ++..+.+-++...|.+++|++|||+  |||... ++.+++..
T Consensus       255 W~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~  332 (448)
T COG2271         255 WLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT  332 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            344444444444444 55556668999999999998  9999999999999999999999996  666554 44555555


Q ss_pred             HHHHHHHHhh--hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCc
Q 022246          183 AGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLW  259 (300)
Q Consensus       183 ~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~  259 (300)
                      ++.+....++  |+....++.++.|+...+..-+......|..|++--|++.|+...+..+ |..++....+.+.+. .|
T Consensus       333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~-~g  411 (448)
T COG2271         333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT-WG  411 (448)
T ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-CC
Confidence            5566666665  4588888899999998888877778888999999999999999999988 888888888888887 89


Q ss_pred             hHHHHHHhHHHHHHHHHHhhc
Q 022246          260 WRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       260 w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      |...|++..+.++++.++.+.
T Consensus       412 W~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         412 WDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             CcchHHHHHHHHHHHHHHHHH
Confidence            999999988887776654433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.56  E-value=1.7e-13  Score=125.96  Aligned_cols=143  Identities=21%  Similarity=0.121  Sum_probs=111.7

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh--hhHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVL  203 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l  203 (300)
                      ...++.+++|.+..+.  +++.+.+.++..++.+++|+++||+|||++++.+.++..+..++....  .+.+.+.+..++
T Consensus       298 lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (496)
T PRK03893        298 LPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF  375 (496)
T ss_pred             HHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            3445557999998888  899999999999999999999999999999888877666655444332  333444444555


Q ss_pred             HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (300)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~  271 (300)
                      .++...+..+....++.|.+|+++|++++++.+....+|..++|++++.+.+. .||+..+++.++..
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~-~g~~~~~~~~~~~~  442 (496)
T PRK03893        376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR-LDLGTALASLSFSL  442 (496)
T ss_pred             HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Confidence            54444445567778899999999999999999999999999999999999876 78988876655444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.56  E-value=3e-13  Score=122.07  Aligned_cols=165  Identities=17%  Similarity=0.221  Sum_probs=124.9

Q ss_pred             HHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc----ccCchHHHHHH-hHHHHHHHHHHHHhhh
Q 022246          119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTFQLD-AVPLAAGAFLCATAQS  193 (300)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd----~~Grr~~~~~~-~~~~~~~~~~~~~~~~  193 (300)
                      .+.......+.+.+++|++....  +++..+..+...+.+++.|+++|    |+|||+.++.+ .+...++.++.+++++
T Consensus        19 ~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~   96 (477)
T TIGR01301        19 GWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD   96 (477)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence            34444556666778899988877  89999999999999999999999    59999998874 6666666677777655


Q ss_pred             HH-----------------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccc--hhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          194 VQ-----------------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       194 ~~-----------------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      ..                 .++++..+..++.....+...++++|.+|+++|  +.+.++.+....+|.++++.+++...
T Consensus        97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~  176 (477)
T TIGR01301        97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG  176 (477)
T ss_pred             hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32                 223333445567777888889999999998865  68999999999999999999887641


Q ss_pred             --C-------C-----CCchHHHHHHhHHHHHHHHH-HhhcCCCCh
Q 022246          255 --G-------N-----PLWWRTMFGLAAIPSILLAL-GMGLSPESP  285 (300)
Q Consensus       255 --~-------~-----~~~w~~~f~~~~~~~~~~~~-~~~~~pe~~  285 (300)
                        .       .     ..+.|+.|++.+++.+++.+ ..++.+|.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence              0       0     02678999998888877665 445578865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.55  E-value=1.9e-13  Score=123.60  Aligned_cols=153  Identities=18%  Similarity=0.103  Sum_probs=106.7

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--Cc-hHHHHHHhHHHHHHHHHHH--HhhhHHHHHH
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GR-TRTFQLDAVPLAAGAFLCA--TAQSVQTMII  199 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Gr-r~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  199 (300)
                      +.++++.+++|++..+.  ++..+.+.++..++.+++|+++||+  ++ |+......+...+......  ...+...+.+
T Consensus       265 ~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (434)
T PRK11663        265 WGNLYMSETLGVDLVTA--NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAA  342 (434)
T ss_pred             HHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHH
Confidence            34556667889998887  8889999999999999999999999  33 3332221111111111111  1223333334


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~  279 (300)
                      ..++.|++..+.......++.|.+|+++|++++|+.+....+|..++|.+.+.+.+. .||+..|++.+++.++..+..+
T Consensus       343 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        343 CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-WHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-cccHHHHHHHHHHHHHHHHHHH
Confidence            444455543333334456778999999999999999999999999999999999876 7899999999888877665544


Q ss_pred             c
Q 022246          280 L  280 (300)
Q Consensus       280 ~  280 (300)
                      +
T Consensus       422 ~  422 (434)
T PRK11663        422 P  422 (434)
T ss_pred             H
Confidence            3

>TIGR00897 2A0118 polyol permease family

Probab=99.55  E-value=6.4e-13  Score=118.97  Aligned_cols=153  Identities=16%  Similarity=0.098  Sum_probs=116.7

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH-HHhHHHHHHHHHHHH-----hhhHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCAT-----AQSVQTM  197 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~l  197 (300)
                      ....|.+.+++|++..+.  +++.+...++..++.++.|+++||+|||+.+. .+.+..++..+.+..     .++.+.+
T Consensus       242 ~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  319 (402)
T TIGR00897       242 AVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA  319 (402)
T ss_pred             HHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence            345566667899988877  78888889999999999999999999988764 333333333333322     2356666


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~  277 (300)
                      +++.++.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+. .||...|++.+++.++..+.
T Consensus       320 ~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-~g~~~~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       320 LIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-FGAIGVVWIFAALYVVSAFL  396 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHH
Confidence            7778888888776544 4456677655 6899999999999999999999999999877 78999999999888777666


Q ss_pred             hhcC
Q 022246          278 MGLS  281 (300)
Q Consensus       278 ~~~~  281 (300)
                      .+|+
T Consensus       397 ~~~~  400 (402)
T TIGR00897       397 TAFI  400 (402)
T ss_pred             HHHh
Confidence            5554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.54  E-value=4.5e-13  Score=121.51  Aligned_cols=164  Identities=13%  Similarity=0.025  Sum_probs=140.8

Q ss_pred             HHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch--HHHHHHhHHHHHHHHHHHH-------
Q 022246          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCAT-------  190 (300)
Q Consensus       120 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr--~~~~~~~~~~~~~~~~~~~-------  190 (300)
                      .+++.....+..+++|++..+.  ..+..+..+..++|.+++|++.||+|.|  ++++++++++.+..+...+       
T Consensus       298 ~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~  375 (477)
T PF11700_consen  298 NTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFF  375 (477)
T ss_pred             HHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            3344456667778999999887  6777888888999999999999999999  8888888887666555554       


Q ss_pred             -hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHH
Q 022246          191 -AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI  269 (300)
Q Consensus       191 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~  269 (300)
                       ..+.+.+.++-++.|++.|+.++..-++.+++.|+++.+..+|++........++||++.+.+.+...+-|+.++...+
T Consensus       376 g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~  455 (477)
T PF11700_consen  376 GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV  455 (477)
T ss_pred             CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence             5678889999999999999999999999999999999999999999999999999999999998875568999999888


Q ss_pred             HHHHHHHHhhcCCCCh
Q 022246          270 PSILLALGMGLSPESP  285 (300)
Q Consensus       270 ~~~~~~~~~~~~pe~~  285 (300)
                      +.++.+++.++++.++
T Consensus       456 lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  456 LFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHHHHhhccchh
Confidence            8888888777776654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.54  E-value=3.1e-13  Score=121.55  Aligned_cols=164  Identities=19%  Similarity=0.125  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHhh-hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc-hHHHHHHhHHHHHHHHHHH
Q 022246          112 GAILFGYHLGVV-NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCA  189 (300)
Q Consensus       112 ~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~~~~~~~~~~~~~~~~  189 (300)
                      ..++.+..+++. .+..+++.+++|++..+.  |++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..
T Consensus        10 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889        10 MSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            334444444444 556678888899999998  999999999999999999999999965 7788888888888888888


Q ss_pred             HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhh--------ccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH
Q 022246          190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYIS--------EISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (300)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~  261 (300)
                      +.++++.+++.|++.|++.+...+...++..        |......|.+..|      .+|.+++|++++.+... ..|+
T Consensus        88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~-~~~~  160 (418)
T TIGR00889        88 QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE-LSNI  160 (418)
T ss_pred             HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-chhH
Confidence            8889999999999999987766665554432        2222223444444      35777788888776322 3465


Q ss_pred             HHHHHhHHHHHHHHHHhhcCCCCh
Q 022246          262 TMFGLAAIPSILLALGMGLSPESP  285 (300)
Q Consensus       262 ~~f~~~~~~~~~~~~~~~~~pe~~  285 (300)
                      + |++.+++.++..++.+++||++
T Consensus       161 ~-f~~~~~~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       161 Q-LYITAGSSALLGVFALTLPDIP  183 (418)
T ss_pred             H-HHHHHHHHHHHHHHHhcCCCCC
Confidence            4 4455555555555566778765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.54  E-value=6.3e-13  Score=112.67  Aligned_cols=175  Identities=23%  Similarity=0.319  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      +..+..+.+..+-.....+...+.++.+.+++|+|.+..  |.++++..+...+..++..+|+.|+|.++.+..++++.+
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            344444444455445556677889999999999999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                      ++.++-... +...++..-.+.|.+.+......++.+-+.||++ -+..+|++.....+|+.+++.+...+.++..+||.
T Consensus        89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            999988877 7778888999999999999999999999999854 69999999999999999999999888877568999


Q ss_pred             HHHHhHHHHHHHHHHhhcC
Q 022246          263 MFGLAAIPSILLALGMGLS  281 (300)
Q Consensus       263 ~f~~~~~~~~~~~~~~~~~  281 (300)
                      .+.+.+.++++.++.++.-
T Consensus       167 aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         167 ALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999999998888877664

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.53  E-value=2.2e-13  Score=123.19  Aligned_cols=160  Identities=17%  Similarity=0.172  Sum_probs=124.4

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCch-HHHHHHhHHHHHHHHHHHHhhh-----
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRT-RTFQLDAVPLAAGAFLCATAQS-----  193 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr-~~~~~~~~~~~~~~~~~~~~~~-----  193 (300)
                      .+..+++.+++|+++...  |++.++..+..++..|+.|+++||    +||| +.++.+.++++++.+++...++     
T Consensus        20 ~~l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~   97 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG   97 (437)
T ss_pred             HHHHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence            446778888999999888  999999999999999999999997    6774 4677788888888777776553     


Q ss_pred             -HHHHHHHHHHHHHhhhhhhhhhhhhhhccC-CcccchhhHHHHHHHHHHHHHHHHHhhhhcc------CCCCchHHHHH
Q 022246          194 -VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLA------GNPLWWRTMFG  265 (300)
Q Consensus       194 -~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~w~~~f~  265 (300)
                       ...+++.+++.+++.+.......++..|+. ++++|++..++...+..+|..+++.+.+.+.      ....+||+.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~  177 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFAL  177 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHH
Confidence             456667788888888887778888889987 4688999999988888887766655544332      12368999999


Q ss_pred             HhHHHHHHHHH-HhhcCCCCh
Q 022246          266 LAAIPSILLAL-GMGLSPESP  285 (300)
Q Consensus       266 ~~~~~~~~~~~-~~~~~pe~~  285 (300)
                      +.+++.++..+ .+++.||++
T Consensus       178 i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       178 VLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHcCCEecC
Confidence            99888876655 445567754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.52  E-value=1.3e-12  Score=117.81  Aligned_cols=135  Identities=15%  Similarity=0.063  Sum_probs=99.5

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVL  203 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l  203 (300)
                      ..|.+.++.|.+....  +...+...++..++.+++|+++||+|||+.+..+.++.++..+.....+  +...+.+..+.
T Consensus       253 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (426)
T PRK12307        253 LLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG  330 (426)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            4555556678887777  7888888999999999999999999999999888877766655444332  22222222222


Q ss_pred             HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 022246          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM  263 (300)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~  263 (300)
                      .+++..+..+..+.++.|.+|++.||+++|+......+|+.++|++.+.+.+. .++...
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~-~g~~~~  389 (426)
T PRK12307        331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT-MGLGAA  389 (426)
T ss_pred             HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc-ccHHHH
Confidence            22222233455667889999999999999999999999999999999998866 665544

>PRK10504 putative transporter; Provisional

Probab=99.51  E-value=1.7e-12  Score=118.54  Aligned_cols=132  Identities=12%  Similarity=0.100  Sum_probs=106.8

Q ss_pred             hhhhhHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh---hhHHHH
Q 022246          122 VVNGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTM  197 (300)
Q Consensus       122 ~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l  197 (300)
                      ......|++.+ .+|.++...  ++......++..++.++.|+++||+|||+++..+.++.++..++..+.   .+.+.+
T Consensus       279 ~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (471)
T PRK10504        279 MLPFMTPVFLQIGLGFSPFHA--GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLL  356 (471)
T ss_pred             HHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            33445565544 688888777  888888888888888999999999999999998888777776655543   334444


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      .+..++.|++.+..++....++.+..|++.++.+.++.+....+|..+|+.+++.+.+
T Consensus       357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        357 PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566788888888888889999999999999999999999999999999999888754

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.51  E-value=1.5e-12  Score=117.75  Aligned_cols=159  Identities=15%  Similarity=0.025  Sum_probs=103.5

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH--H--hhhHHHH
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--T--AQSVQTM  197 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l  197 (300)
                      ...+.++++.+++|.+..+.  ++..++..++..+++++.|+++||+|||++++.+.++.++..+...  .  ..+....
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            33445566777889987777  7778887778888899999999999999988776655443332221  1  1223322


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      +.+-++.+++.+...+....++.|++|++.|+++.|+.+....+ ++...|.+.+.+... ..|...+++.++..++.++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-GMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHH
Confidence            22222233333444456678889999999999999997765443 344577777765432 4466677766666666666


Q ss_pred             HhhcCCC
Q 022246          277 GMGLSPE  283 (300)
Q Consensus       277 ~~~~~pe  283 (300)
                      ..+++++
T Consensus       419 ~~~~l~~  425 (432)
T PRK10406        419 VSLMLHR  425 (432)
T ss_pred             HHHHhhh
Confidence            5555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.50  E-value=1.2e-12  Score=120.09  Aligned_cols=158  Identities=12%  Similarity=0.139  Sum_probs=120.1

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHH-HHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HHh-hhHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVS-SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMI  198 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~-~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~  198 (300)
                      ....+++.+++|++..+.  ++... ...++..++.+++|+++||+|+|+.+.++.++.++..++.   +.. ++...+.
T Consensus       243 ~~~~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~  320 (491)
T PRK11010        243 SLTTTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG  320 (491)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            346677778899999888  88764 5567899999999999999999988776665545443322   232 3444455


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh
Q 022246          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM  278 (300)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  278 (300)
                      +..++..++.|...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+. .||+..|.+.++++++.++..
T Consensus       321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-~G~~~~f~~~~~~~l~~l~~~  399 (491)
T PRK11010        321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-HGWPTFYLFSVAAAVPGLLLL  399 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHH
Confidence            5556656555656667788889999999999999999999999998888888888876 789999999998888877766


Q ss_pred             hcCCCC
Q 022246          279 GLSPES  284 (300)
Q Consensus       279 ~~~pe~  284 (300)
                      ++++++
T Consensus       400 ~~~~~~  405 (491)
T PRK11010        400 LVCRQT  405 (491)
T ss_pred             HHHHhc
Confidence            655543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.50  E-value=1.2e-12  Score=118.44  Aligned_cols=132  Identities=16%  Similarity=0.047  Sum_probs=95.1

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH-H---HHhhhHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL-C---ATAQSVQTMIIGR  201 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~  201 (300)
                      .+.++++.+|++..+.  ++....+.++..++.+++|+++||+|||++++.+.++.++..+. .   ...+++..+.+..
T Consensus       261 ~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (434)
T PRK15075        261 TPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVE  338 (434)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4445666689988877  78888888889999999999999999999988765544332221 1   1123444444445


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCCCCch
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWW  260 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~w  260 (300)
                      ++.|++.+...+....++.|.+|++.|++++++.+ .+..+++.++|.+.+.+.+. .|+
T Consensus       339 ~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~-~g~  397 (434)
T PRK15075        339 LWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV-TGD  397 (434)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh-cCC
Confidence            56667777666777788999999999999999954 44455577788888888765 444

>TIGR00898 2A0119 cation transport protein

Probab=99.50  E-value=2.5e-13  Score=125.15  Aligned_cols=137  Identities=19%  Similarity=0.108  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhhhhhhhhhhhhhhccCC
Q 022246          147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVLAGIGIGISSAIVPLYISEISP  224 (300)
Q Consensus       147 ~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (300)
                      ..+..++..++.++.++++||+|||+++.++.++.+++.++..+.++.  +..++..++.+++.++.++..+.+..|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344556677888999999999999999999999888888877776543  445555667777777888889999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCCCChh
Q 022246          225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR  286 (300)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~  286 (300)
                      ++.|++++|+.+....+|.+++|++.+ +..  .++...+++.+++.++..++.+++||+.+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE--KWLFLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH--HHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            999999999999999999999999988 432  55777888888888888787888898764

>TIGR00895 2A0115 benzoate transport

Probab=99.50  E-value=1.2e-12  Score=116.25  Aligned_cols=130  Identities=18%  Similarity=0.106  Sum_probs=106.7

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR  201 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (300)
                      ......|++.+++|.+..+.  ++..+...++..++.+++|+++||+|||+.+....+......++.....+.+.+++..
T Consensus       268 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (398)
T TIGR00895       268 FLTNWLPKLMVELGFSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLG  345 (398)
T ss_pred             HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            44446678888999988877  8899999999999999999999999999554444333333333333356677777888


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      ++.|++.++..+....++.|.+|+++|++++|+......+|..++|.++|.+
T Consensus       346 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       346 AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999999999999999999999999999999999998875

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.48  E-value=1.8e-12  Score=118.82  Aligned_cols=158  Identities=22%  Similarity=0.188  Sum_probs=128.0

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----hhHHH
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQT  196 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~  196 (300)
                      +.....+.+..+..-|+...  +++..+..+-..+..+++|.++||++||++++.+-++.++..+..++.     .+.+.
T Consensus        28 ~~~va~~wlv~~lt~S~~~v--alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~  105 (524)
T PF05977_consen   28 MQTVALAWLVTQLTGSPLMV--ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWL  105 (524)
T ss_pred             HHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHH
Confidence            33345555555655555555  888999999999999999999999999999999887776655444332     47888


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      ++++-++.|++.+...|...+++.|+.|+++...+.++.....++..++||.++|.+... .|-.+.|++.++..++.++
T Consensus       106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~-~G~~~~f~inalsfl~~i~  184 (524)
T PF05977_consen  106 LLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF-FGAAAAFLINALSFLISIL  184 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998765 6788899888776665554


Q ss_pred             HhhcCC
Q 022246          277 GMGLSP  282 (300)
Q Consensus       277 ~~~~~p  282 (300)
                      +.+..+
T Consensus       185 ~l~~~~  190 (524)
T PF05977_consen  185 ALLRWK  190 (524)
T ss_pred             HHHHcc
Confidence            444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.47  E-value=5.4e-12  Score=112.24  Aligned_cols=144  Identities=15%  Similarity=0.067  Sum_probs=117.8

Q ss_pred             HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 022246          128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG  207 (300)
Q Consensus       128 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  207 (300)
                      +.+.++.|.+....  +.+.++..++..++.++.|++.||+|+|+++..+.++.++..++.+..++.+.+++..++.|++
T Consensus       229 ~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        229 AIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT  306 (382)
T ss_pred             HHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            33446789988777  8888888888999999999999999999999999999888888888889999999999999999


Q ss_pred             hhhhhhhhhhhhhccCCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          208 IGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      .+...+....++.+. +++++++..++++ ....+|..++|.++|.+.+. .++ ..|++.+++.++.++
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-LGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHH
Confidence            998888888888887 5566788888876 55667889999999999876 666 456666665554433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.46  E-value=2.3e-12  Score=115.45  Aligned_cols=164  Identities=17%  Similarity=0.095  Sum_probs=122.2

Q ss_pred             HHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh---hHH
Q 022246          119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQ  195 (300)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~---~~~  195 (300)
                      +...+..+...+.++.|++...+  .++.....+...+..+++.++.||+|||+.++.+..+..+..+++....   +..
T Consensus       285 Gi~ai~~Yst~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~  362 (485)
T KOG0569|consen  285 GINAIFFYSTSIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF  362 (485)
T ss_pred             CcceeHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455667778889999999888  7889999999999999999999999999999999998888877665431   111


Q ss_pred             ------HHHHHHHHHHHhh-hhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246          196 ------TMIIGRVLAGIGI-GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (300)
Q Consensus       196 ------~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~  268 (300)
                            ..+++.++..++. -+..|+.+-+.+|++|++.|+.++++......+..++-.+....+.+. .|- +.|.+..
T Consensus       363 ~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~-~g~-~~filF~  440 (485)
T KOG0569|consen  363 GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV-IGP-YVFILFV  440 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-hhhHHHH
Confidence                  1123333333322 234688889999999999999999999999888887776666666544 333 6666677


Q ss_pred             HHHHHHHH-HhhcCCCChh
Q 022246          269 IPSILLAL-GMGLSPESPR  286 (300)
Q Consensus       269 ~~~~~~~~-~~~~~pe~~~  286 (300)
                      +.+++..+ .++++|||+.
T Consensus       441 i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  441 IPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             HHHHHHHHHHHHhCcccCC
Confidence            76666554 6667899974

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.46  E-value=2.4e-12  Score=114.98  Aligned_cols=133  Identities=8%  Similarity=0.076  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  223 (300)
                      ++..++..+...++.++.|++.||+|||+.++++.++.++..++....++.+.+++..++.|++..........++.+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77888888888889999999999999999999999888888887778888888888899999988776667777888888


Q ss_pred             CcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246          224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       224 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~  277 (300)
                      +++.+++..+. ++....+|..++++++|.+.+. .||+..|.+.+++.++..+.
T Consensus       337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-IGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            88888887766 6778899999999999999876 78999999988887665443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.46  E-value=2.8e-12  Score=117.28  Aligned_cols=154  Identities=18%  Similarity=0.108  Sum_probs=111.3

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCch-------HHHHHHhHHHHHHHHHHHHhhhHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT-------RTFQLDAVPLAAGAFLCATAQSVQT  196 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr-------~~~~~~~~~~~~~~~~~~~~~~~~~  196 (300)
                      ++..+++.+++|++....  +++.+++.++..++.+++|+++||+|||       ..+.+..++.++..++.+...+.+.
T Consensus       273 ~~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~  350 (476)
T PLN00028        273 NIIAEYFYDRFGLSLETA--GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGA  350 (476)
T ss_pred             hHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            345567778889998888  8899999999999999999999999875       2333333333343444445556555


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      .++..++.+++.++..+...+++.+..| ++||.+.|+.+.+..+|+.+++.+.+ . ....+|+..|++.+++.+++.+
T Consensus       351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~-~~~~~y~~~f~~~~~~~~i~~~  427 (476)
T PLN00028        351 AIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-T-GSSYSTETGISLMGVMIIACTL  427 (476)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-h-cCCccHhhHHHHHHHHHHHHHH
Confidence            5556666677666666666677777654 68999999998888888888877654 1 2225799999999888877777


Q ss_pred             HhhcCC
Q 022246          277 GMGLSP  282 (300)
Q Consensus       277 ~~~~~p  282 (300)
                      +.++++
T Consensus       428 ~~~~~~  433 (476)
T PLN00028        428 PVAFIH  433 (476)
T ss_pred             HHHhee
Confidence            666653

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.46  E-value=1.1e-12  Score=118.89  Aligned_cols=161  Identities=17%  Similarity=0.118  Sum_probs=106.3

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH---HHHHHHHH--hhhHHH
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA---AGAFLCAT--AQSVQT  196 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~---~~~~~~~~--~~~~~~  196 (300)
                      ...+...++++..|.+....  ++....+.++..++.+++|+++||+|+++....+..+..   ++.+....  ..+.+.
T Consensus       270 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T TIGR00712       270 VLDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV  347 (438)
T ss_pred             HHHhHHHHHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            33445566777789888777  888888999999999999999999965432222322221   11122222  123333


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHH-HHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  275 (300)
                      ..+..++.|++..+..........|.+|+++|+++.|+.+....+| .+++|.+.|.+.+. .||.+.|++.+++.++..
T Consensus       348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~-~g~~~~~~~~~~~~~~~~  426 (438)
T TIGR00712       348 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAV  426 (438)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh-ccchHHHHHHHHHHHHHH
Confidence            3344455555433322233346789999999999999998887776 46899999998876 789999988777765554


Q ss_pred             H-HhhcCCCCh
Q 022246          276 L-GMGLSPESP  285 (300)
Q Consensus       276 ~-~~~~~pe~~  285 (300)
                      + ..+++||.+
T Consensus       427 ~~~~~~~~~~~  437 (438)
T TIGR00712       427 ILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHHhhcc
Confidence            4 444566654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.45  E-value=9.5e-13  Score=116.21  Aligned_cols=179  Identities=24%  Similarity=0.237  Sum_probs=139.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhC----CChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchH
Q 022246           98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG----IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTR  172 (300)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~  172 (300)
                      +.+..+.++.+=+.-.|.++-   +-....-|+..+++    ++++++  .-+.+.|..-.=+.++++||++||+ |+|+
T Consensus        19 ~Pr~l~~if~vE~WERFsyYG---mraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~   93 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYG---MRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRR   93 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhh---hHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence            445555554444444444332   22335557777777    888877  4445554443345678999999995 9999


Q ss_pred             HHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCccc--chhhHHHHHHHHHHHHHHHHH
Q 022246          173 TFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALV  248 (300)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~  248 (300)
                      .++.|.++++++.++.+.+.  +...+++..++.++|.|..=+....++.|.+|++.  |-.++++++++.++|++++|+
T Consensus        94 tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~  173 (498)
T COG3104          94 TIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI  173 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence            99999999999999999884  78889999999999999999999999999998753  678889999999999999999


Q ss_pred             hhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCC
Q 022246          249 AGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP  282 (300)
Q Consensus       249 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~p  282 (300)
                      +.+++.+. .||...|.+.++-..+.++.+++.+
T Consensus       174 i~~~~~~~-~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         174 ITGLLAIN-YGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999877 8999999999888777777665544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.45  E-value=7e-12  Score=109.24  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=130.6

Q ss_pred             HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHHHH
Q 022246          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMII  199 (300)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~  199 (300)
                      ..++|.-|++++..|++.+..  +++..++.++..+|++++|+++|| +.|+.+.....+.++..+...+. .+.+..++
T Consensus       229 ~~ftYi~P~L~~v~g~s~~~v--s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~  305 (394)
T COG2814         229 ALYTYIRPFLESVAGFSVSAV--SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALA  305 (394)
T ss_pred             hhHHhHHHHHHHccCCCHhHH--HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            366778899999999999888  999999999999999999999999 99998888877777776665554 45556666


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~  279 (300)
                      .-++.|+..+.........+++ .-++.+..+.+++....++|..+|..+||.+.++ .|+....|+.+++.++.+++.+
T Consensus       306 ~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         306 LLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHH
Confidence            6777888877766666667777 4457789999999999999999999999999988 9999999999999888777655


Q ss_pred             c
Q 022246          280 L  280 (300)
Q Consensus       280 ~  280 (300)
                      .
T Consensus       384 ~  384 (394)
T COG2814         384 L  384 (394)
T ss_pred             H
Confidence            4

>TIGR00788 fbt folate/biopterin transporter

Probab=99.45  E-value=2.7e-12  Score=117.01  Aligned_cols=170  Identities=20%  Similarity=0.080  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC-----chHHHHHHhHHHH-H
Q 022246          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQLDAVPLA-A  183 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G-----rr~~~~~~~~~~~-~  183 (300)
                      ...++..++.........+++.+++|++.++.  +...++..+...+-.+ +|+++||++     ||+.++++.++.+ +
T Consensus        32 ~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~  108 (468)
T TIGR00788        32 LQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAI  108 (468)
T ss_pred             HHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence            33445555553344456777888899999998  8888888888887544 999999998     7887777776663 4


Q ss_pred             HHHHHHHhhhHHHHH-HHHHHHHHhhhhhhhhhhhhhhccCCcccchhh---HHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 022246          184 GAFLCATAQSVQTMI-IGRVLAGIGIGISSAIVPLYISEISPTEIRGAL---GSVNQLFICVGILAALVAGLPLAGNPLW  259 (300)
Q Consensus       184 ~~~~~~~~~~~~~l~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~  259 (300)
                      .....+..++...+. ++.++.+++.+.......+++.|..+ ++++..   .++......+|.++++.++|.+.+. .+
T Consensus       109 ~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~-~~  186 (468)
T TIGR00788       109 LYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK-TL  186 (468)
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence            333344444544444 47889999999999999999999998 555443   3344444568999999999998765 78


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcCCCC
Q 022246          260 WRTMFGLAAIPSILLALGMGLSPES  284 (300)
Q Consensus       260 w~~~f~~~~~~~~~~~~~~~~~pe~  284 (300)
                      |+..|++.+++.++..+..++++|+
T Consensus       187 ~~~~f~~~a~l~ll~~~~~~~~~E~  211 (468)
T TIGR00788       187 TRILFLITAALLLLQLFVSNLSKER  211 (468)
T ss_pred             cchHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999988887776666777875

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.44  E-value=4.8e-13  Score=113.32  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=99.9

Q ss_pred             HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhH
Q 022246          153 GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALG  232 (300)
Q Consensus       153 ~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~  232 (300)
                      .-.-|.++.+++.||+|||+.+..++++++++.++...+.+--...+..|..-++.++.+.+.+.|..|.||+..|+++.
T Consensus       393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgv  472 (528)
T KOG0253|consen  393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGV  472 (528)
T ss_pred             hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcch
Confidence            34567889999999999999999999999999998887755444444444444555666788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcCC-CCh
Q 022246          233 SVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP-ESP  285 (300)
Q Consensus       233 ~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~p-e~~  285 (300)
                      |.-.....+|+++.|+++ ....  .+-.....+.+.+.++..+..+++| ||+
T Consensus       473 GtcSsmaRIggI~~p~iA-~~~e--~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  473 GTCSSMARIGGIFSPVIA-MRAE--LSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hhhhhHHhhhhhhhhHHH-HHhc--cceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            999999999999999999 3222  2233444555666666777777776 443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.44  E-value=9.2e-12  Score=111.02  Aligned_cols=175  Identities=15%  Similarity=0.037  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHH--HHHHHHHHHHHHhhh-hhhccccCchHHHHHHhHHH-
Q 022246          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWI--VSSLLAGATVGSFTG-GSLADKFGRTRTFQLDAVPL-  181 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~i~~~i~~~~~-g~lsd~~Grr~~~~~~~~~~-  181 (300)
                      ...++..++.++...+...+.+|.+.++.|++.++.  |..  .++..+...+.++++ ++++||+|||+.+++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            344556677788888888899999999999999988  776  456677777777777 55899999999876554332 


Q ss_pred             HHHHHHHH---Hhhh-HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 022246          182 AAGAFLCA---TAQS-VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP  257 (300)
Q Consensus       182 ~~~~~~~~---~~~~-~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  257 (300)
                      ++.....+   ...+ ...++...++.++..+...+....+..|..++++++...+....+..+|.++++.+.+.+.+. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~-  159 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK-  159 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            22222222   1222 333444455566666667777777888888888888888888888889999999888887765 


Q ss_pred             CchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246          258 LWWRTMFGLAAIPSILLALGMGLSPE  283 (300)
Q Consensus       258 ~~w~~~f~~~~~~~~~~~~~~~~~pe  283 (300)
                      .|||..|++.+++.++..+..++++|
T Consensus       160 ~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       160 FGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            79999999999888776655555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.44  E-value=6.5e-12  Score=126.67  Aligned_cols=149  Identities=23%  Similarity=0.287  Sum_probs=125.7

Q ss_pred             hhhHHHHHHHhCCChh-hhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV  202 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~-~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (300)
                      .....++.+.+|.+.. ..  +++.+...++.+++.+++|+++||+++++++.++.++.+++.++..+..+.+.++++.+
T Consensus       253 ~~~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (1146)
T PRK08633        253 ANFPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFF  330 (1146)
T ss_pred             HhhHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4456677888999887 66  89999999999999999999999999999998888888888888888888888888899


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHH
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL  274 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~  274 (300)
                      +.|++.++..+...+++.+..|++.||+++++.++...+|.++++.+++.+.....++...|++.+.+.++.
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            999999998889999999999999999999999999999998888888776543345666676666554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.43  E-value=1.7e-12  Score=114.48  Aligned_cols=137  Identities=19%  Similarity=0.227  Sum_probs=101.0

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC-chHHHH-HHh-HHHHHHHHHHHH--hhhHHHHHH
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-RTRTFQ-LDA-VPLAAGAFLCAT--AQSVQTMII  199 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G-rr~~~~-~~~-~~~~~~~~~~~~--~~~~~~l~~  199 (300)
                      +...++.+.+|.+..+.  ++..+.+.++..++.++.|+++||++ ||+..+ ... .+..++......  ..+...+++
T Consensus       238 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKA--SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLI  315 (379)
T ss_pred             HHHHHHHHHhCCCHHHH--HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence            35556777889988887  88999999999999999999999864 333222 211 112222222222  234555566


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f  264 (300)
                      +.++.|+...+..+....++.|.+|+++|+++.++++....+|..++|.+.+.+.+. .||++.|
T Consensus       316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f  379 (379)
T TIGR00881       316 CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG-FGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh-hcccccC
Confidence            667777766666667778899999999999999999999999999999999999876 7888754

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.43  E-value=2e-12  Score=113.54  Aligned_cols=130  Identities=17%  Similarity=0.262  Sum_probs=114.1

Q ss_pred             hhHHHHHH-HhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh-HHHHHHHHH
Q 022246          125 GALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS-VQTMIIGRV  202 (300)
Q Consensus       125 ~~~~~~~~-~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~  202 (300)
                      ...|++.+ .+|.+..+.  ++..+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHY--GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence            35565555 489888877  88999999999999999999999999999999888888888777777764 888888899


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  256 (300)
                      +.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+++.+.+.
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.43  E-value=4e-12  Score=116.07  Aligned_cols=172  Identities=20%  Similarity=0.189  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHH
Q 022246          109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAF  186 (300)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~  186 (300)
                      ..+...+..+........++.+.++.+++..+.  ..+.++..+...++.++.|+++|+..  ++.+..+++++.+++.+
T Consensus       303 ~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~  380 (509)
T KOG2504|consen  303 LALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL  380 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence            334444444555566668888888999999988  89999999999999999999999988  56677788888888888


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHH
Q 022246          187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL  266 (300)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~  266 (300)
                      .+.++.+++.+++.-.+.|++.|...+....++.|+...++-..+.|+......++.++||.+++.+.+...+|...|++
T Consensus       381 ~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~  460 (509)
T KOG2504|consen  381 FLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF  460 (509)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence            99999999999999999999999988888889999999999999999999999999999999999988876669999999


Q ss_pred             hHHHHHHHHHHhhcCC
Q 022246          267 AAIPSILLALGMGLSP  282 (300)
Q Consensus       267 ~~~~~~~~~~~~~~~p  282 (300)
                      .+++.++..+++++.|
T Consensus       461 ~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  461 CGLCFLLSAVLLLILR  476 (509)
T ss_pred             cChHHHHHHHHHHHhH
Confidence            9999888887777766

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.43  E-value=8e-12  Score=114.04  Aligned_cols=155  Identities=19%  Similarity=0.086  Sum_probs=106.9

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHH--------HHHhHHH--HHHHHHHHH-hh
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF--------QLDAVPL--AAGAFLCAT-AQ  192 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~--------~~~~~~~--~~~~~~~~~-~~  192 (300)
                      .+.+.++.+.+|.+..+.  ++..++..++..++.+++|+++||+++|+..        ..+..+.  ++..+.... ..
T Consensus       282 ~~lp~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (465)
T TIGR00894       282 TYLPTFISWVLRVSGKEN--GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA  359 (465)
T ss_pred             HHHHHHHHHHhCcChHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            345557778899988888  8999999999999999999999998754321        1111111  111111222 22


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC--CchHHHHHHhHHH
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP--LWWRTMFGLAAIP  270 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~w~~~f~~~~~~  270 (300)
                      +....+++.++.+.+.++..+.......|..|. .+|.+.++.+....+|+.++|.+.+.+.+..  .+|+..|++.++.
T Consensus       360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~  438 (465)
T TIGR00894       360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV  438 (465)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence            344444445555555555555555566677765 7899999999999999999999999887642  4599999998888


Q ss_pred             HHHHHHHhhcC
Q 022246          271 SILLALGMGLS  281 (300)
Q Consensus       271 ~~~~~~~~~~~  281 (300)
                      .++..++..+.
T Consensus       439 ~~i~~i~~~~~  449 (465)
T TIGR00894       439 NILCVIFYLIF  449 (465)
T ss_pred             HHHHHHHeeee
Confidence            87776665554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.42  E-value=6e-12  Score=113.08  Aligned_cols=148  Identities=14%  Similarity=0.036  Sum_probs=100.1

Q ss_pred             hhhhhHHHHHHHh--CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHH-HHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246          122 VVNGALEYLAKDL--GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT-FQLDAVPLAAGAFLCATAQSVQTMI  198 (300)
Q Consensus       122 ~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~-~~~~~~~~~~~~~~~~~~~~~~~l~  198 (300)
                      .+....|.+.+++  +.+..+.  +.......++..++.+++|+++||++||+. ++...++.+++.++.....+....+
T Consensus       260 ~~~~~~p~~l~~~~~~~s~~~~--~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (412)
T TIGR02332       260 AINIWTPQILQSFNQGSSNIMI--GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQL  337 (412)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHh--HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3344555555554  5566666  788899999999999999999999997774 3334333333332222222222222


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (300)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~  271 (300)
                      ++-++.+++.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+...+|++.|++.++..
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       338 LGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            2222333333333344455667889999999999999999999999999999999887456999998776654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.42  E-value=4.6e-12  Score=114.53  Aligned_cols=143  Identities=17%  Similarity=0.185  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGISSAIVPLYISEI  222 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  222 (300)
                      +++.++..++..++.+++++++||+|+|+++..+.++.+++.++..+. .+.+.+++..++.|++.+...+..+++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            677778889999999999999999999999999988888877766654 3566667777889999998889999999988


Q ss_pred             CC-------cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc--------------hHHHHHHhHHH-HHHHHHHhh-
Q 022246          223 SP-------TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--------------WRTMFGLAAIP-SILLALGMG-  279 (300)
Q Consensus       223 ~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------------w~~~f~~~~~~-~~~~~~~~~-  279 (300)
                      .+       ++.+|...|+++....+|..+++.+.+.+.+. .|              .++.+....++ .++.+++.. 
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~-~G~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~  418 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI-IGYVANAAQSPITLNGIKILMFAVPALFLLLAAIIIGR  418 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65       45569999999999999999999998887643 22              24444444333 344444544 


Q ss_pred             cCCCChhH
Q 022246          280 LSPESPRW  287 (300)
Q Consensus       280 ~~pe~~~~  287 (300)
                      ++|.+++.
T Consensus       419 ~y~l~~~~  426 (437)
T TIGR00792       419 FYKLTEKK  426 (437)
T ss_pred             HeeCcHHH
Confidence            66665443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.41  E-value=2e-11  Score=108.52  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=111.4

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH-hhhHHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-AQSVQTMIIGRV  202 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~  202 (300)
                      .+..+++.+.+|.++.+.  ++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..+
T Consensus       220 ~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK10091        220 SYIKPYMMFISGFSETSM--TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF  297 (382)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            345677777889988887  89999999999999999999999999999998888877777655543 445555556666


Q ss_pred             HHHHhhhhhhhhhhh-hhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246          203 LAGIGIGISSAIVPL-YISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (300)
Q Consensus       203 l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~  279 (300)
                      +.+++..+..+.... ...+..+.+.++.+.  .+....+|..+||.++|.+.+...+|++.+++.+++.++......
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            666665544444443 344444545555443  456678999999999999887657899999998877766554433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.41  E-value=2.2e-11  Score=105.10  Aligned_cols=145  Identities=16%  Similarity=0.110  Sum_probs=112.0

Q ss_pred             HHhhhhhHHHHHHH--hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHH
Q 022246          120 LGVVNGALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTM  197 (300)
Q Consensus       120 ~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (300)
                      .++..+...++.+.  +|+++++.  ++..+.+..+..+|.++.+++.||+|+|+++.++.++.+++.++....++...+
T Consensus       157 ~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~  234 (310)
T TIGR01272       157 VSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM  234 (310)
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            34445556666543  68888888  899999999999999999999999999999888888877777666555544333


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHH
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP  270 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~  270 (300)
                       ...++.|++.+..+|...+...+.+|++ .+.+.++. ....+|+.+.|.+.|.+.+. .|.++.|++..++
T Consensus       235 -~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~-~g~~~a~~v~~~~  303 (310)
T TIGR01272       235 -WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC-LGIQLAFALPVPC  303 (310)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh-ccchHHHHHHHHH
Confidence             3556889999999999999999988754 45666665 45668889999988888776 6788888754443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.41  E-value=1.8e-11  Score=112.32  Aligned_cols=150  Identities=22%  Similarity=0.208  Sum_probs=132.8

Q ss_pred             hHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246          126 ALEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (300)
Q Consensus       126 ~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (300)
                      .+|.+ .+.+|.+...+  |++.+.+.+|.++|.++.+++.+|+++++++..+.++++++.+..+++++.+..+++.++.
T Consensus       240 LlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~  317 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA  317 (524)
T ss_pred             hhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            45554 56788888877  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh
Q 022246          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM  278 (300)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  278 (300)
                      |++.........+.+.+..|++.||+.++++.+....+..+|.++.|.+.+. .|-+..+.+.++..++..++.
T Consensus       318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-FGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHH
Confidence            9999998889999999999999999999999999999999999999999876 788888887776655554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.39  E-value=1e-11  Score=107.55  Aligned_cols=162  Identities=16%  Similarity=0.109  Sum_probs=139.9

Q ss_pred             HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHH
Q 022246          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIG  200 (300)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (300)
                      +.+.....+-..++|++..+.  ..+.....+..++|++++|+|.||+|-|+++..+++++.+.++..-+......++++
T Consensus       270 til~~~~~fg~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~  347 (438)
T COG2270         270 TILAMGGVFGAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWIL  347 (438)
T ss_pred             HHHHHHHHHHHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHH
Confidence            344445556677999998888  777888888899999999999999999999999999998888877777777777788


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      -.+.|++.|+.++..-++.+++.|+++-++.+|+++.....+..+||++.+.+.+...+-|..+....++.++.++..++
T Consensus       348 gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         348 GLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            89999999999999999999999999999999999999999999999999999876567888888777777777777777


Q ss_pred             CCCC
Q 022246          281 SPES  284 (300)
Q Consensus       281 ~pe~  284 (300)
                      +|+.
T Consensus       428 v~~~  431 (438)
T COG2270         428 VKVP  431 (438)
T ss_pred             ecCC
Confidence            7654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.39  E-value=6.7e-11  Score=106.04  Aligned_cols=146  Identities=14%  Similarity=0.091  Sum_probs=112.2

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----hhHHHHHHHH
Q 022246          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQTMIIGR  201 (300)
Q Consensus       127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~  201 (300)
                      +.++.+++|.+..+.  ++......++..++.++.|+++||+|+|+.+.++.++.+++.++....     .+.+.+++..
T Consensus       239 p~~~~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK15402        239 PVILISGEQLSSYEY--GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL  316 (406)
T ss_pred             HHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence            345667889988777  777777778888999999999999999999988888777776666543     3456667778


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      ++.|++.+...+......... ++++||+..+.++....+|..+|+.+++.+.+. .++....+..++..++.++
T Consensus       317 ~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK15402        317 SLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG-GGNGLFNLFNLANGLLWLL  389 (406)
T ss_pred             HHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC-CchHHHHHHHHHHHHHHHH
Confidence            889999888777666555444 448899999999999999999999999998766 5666555555555544433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.38  E-value=1.2e-11  Score=110.13  Aligned_cols=183  Identities=19%  Similarity=0.199  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc-hHHHHHHhHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPL  181 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~~~~~~~~  181 (300)
                      |+.+.++.+..++.....+++.+..-.+.++++.+.+....|++.++..++.+++.+++|+.+.|.|. |+.++.+.++.
T Consensus        33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence            56666777777777777776666444444554443333334999999999999999999999999995 77788888889


Q ss_pred             HHHHHHH-HHh---h-hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246          182 AAGAFLC-ATA---Q-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (300)
Q Consensus       182 ~~~~~~~-~~~---~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  256 (300)
                      +++.++. ++.   + ..+.++++|++.|+|.|. .+..-.|+++-...+.|.++++....+..+|.++||.+...+..-
T Consensus       113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            9998877 332   3 567788999999999765 578889999988889999999998888888877777776555321


Q ss_pred             C-Cc-----------hHHHHHHhHHHHHHHHH-HhhcCCCChh
Q 022246          257 P-LW-----------WRTMFGLAAIPSILLAL-GMGLSPESPR  286 (300)
Q Consensus       257 ~-~~-----------w~~~f~~~~~~~~~~~~-~~~~~pe~~~  286 (300)
                      . .|           +...-|+.+++.++..+ +.++++|.++
T Consensus       192 g~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  192 GEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             cCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            0 11           34566777777766655 3444566543

>PRK10054 putative transporter; Provisional

Probab=99.38  E-value=1.4e-11  Score=110.08  Aligned_cols=149  Identities=14%  Similarity=0.057  Sum_probs=114.1

Q ss_pred             HhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhhhh
Q 022246          133 DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGIS  211 (300)
Q Consensus       133 ~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~  211 (300)
                      +.+.+....  +++.....+.....+++.|++.||+++|+.+..++++.+++.+...+. ++.+.+++..++.|++.+..
T Consensus       238 ~~~~~~~~~--g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  315 (395)
T PRK10054        238 DSDFAEKVV--AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIY  315 (395)
T ss_pred             ccchHHHHH--HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence            344444444  677777777777777888999999999999999988888877767654 56776777888999998888


Q ss_pred             hhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh-cCCCCh
Q 022246          212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPESP  285 (300)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~pe~~  285 (300)
                      .+.....+.+..|++.|+++++..+ ...+|..+||.++|.+.+. .|....|++.+....+..++.+ -.+|+|
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT-LPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH-cChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            8888889999999999999988765 5568999999999999887 6888888877665544444333 344433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.37  E-value=2e-11  Score=100.73  Aligned_cols=176  Identities=16%  Similarity=0.067  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      |..+..........+. ...++..-|.+++.+|++.++.  +.+.+.-.+|..+| ++.|.+.|++|.+.++.+|.+...
T Consensus         2 W~~l~a~~~v~~~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCSGT-TYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhcCc-ccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHH
Confidence            4444443433433332 3345667889999999999998  88888999998775 889999999999999999999999


Q ss_pred             HHHHHHHHh-------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          183 AGAFLCATA-------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       183 ~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      ++..+...+       .++|.+.+..++.|.+.+...........+.|| ++||++.|+.-....+++.+-..+...+..
T Consensus        78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            888776653       356777777788888877777777777889998 579999999999999988766666555544


Q ss_pred             CCCchHHHHHHhHHHHHHHHHHhhcCCCC
Q 022246          256 NPLWWRTMFGLAAIPSILLALGMGLSPES  284 (300)
Q Consensus       256 ~~~~w~~~f~~~~~~~~~~~~~~~~~pe~  284 (300)
                      . ..-...+.+.....++.++..++++..
T Consensus       157 ~-~~~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  157 D-DPSSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             C-ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence            3 323333333333345555555555443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.37  E-value=4.5e-11  Score=106.58  Aligned_cols=147  Identities=18%  Similarity=0.079  Sum_probs=109.3

Q ss_pred             HHHHHHhCCChhhhHHHHHHHHHH-HHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH-H-----hhhHHHHHHH
Q 022246          128 EYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-T-----AQSVQTMIIG  200 (300)
Q Consensus       128 ~~~~~~~~~s~~~~~~~~~~~~~~-i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~  200 (300)
                      +.+.+|.|++.++.  +++..+.. +...++.+++|++.||+|+|+++..+.++.++..+... .     .++...++..
T Consensus       232 ~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       232 KLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             hHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            34445689999888  88777765 45667789999999999999998887766533322221 1     1233344445


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCc-ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~  277 (300)
                      ..+.+++.+...+.....+.+..++ +.+++.+++.+....+|..++|.++|.+.+. .||+..|++.+++.++.++.
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-FGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHH
Confidence            5566667777777777787777776 7889999999999999999999999999876 78999999888776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.36  E-value=3.7e-11  Score=98.65  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=113.2

Q ss_pred             hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH-HHHHHHHhhhHHHHHHHH
Q 022246          123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA-GAFLCATAQSVQTMIIGR  201 (300)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~  201 (300)
                      +......+++.||+|...+  +.+.+......++..++.|.++||+|++...+.+..+..+ +-.+..+  +.+.=.+..
T Consensus       284 i~lg~~fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m  359 (459)
T KOG4686|consen  284 ITLGPMFFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSM  359 (459)
T ss_pred             hhhhHHHHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHH
Confidence            3345567899999999888  7777777777888899999999999999887765444333 3333332  233334566


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH---HHHHHhHHHHHHHHHHh
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR---TMFGLAAIPSILLALGM  278 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~---~~f~~~~~~~~~~~~~~  278 (300)
                      .+.|+.....-...+..++-+.|.+..|++.|+.+...++|-.+.|++++++.+...++-   ..|.+.+.+++....+.
T Consensus       360 ~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil  439 (459)
T KOG4686|consen  360 TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL  439 (459)
T ss_pred             HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            788888877766788899999999999999999999999999999999999998644333   33444444444444444


Q ss_pred             hcC
Q 022246          279 GLS  281 (300)
Q Consensus       279 ~~~  281 (300)
                      +.+
T Consensus       440 ~~~  442 (459)
T KOG4686|consen  440 FYL  442 (459)
T ss_pred             hhe
Confidence            444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.36  E-value=1.1e-10  Score=104.19  Aligned_cols=149  Identities=11%  Similarity=0.021  Sum_probs=114.5

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  203 (300)
                      .+..|.+.+++|++....  ++....+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++
T Consensus       237 ~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  314 (394)
T PRK10213        237 TYIRPVYMNLAGFGVDGL--TLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAII  314 (394)
T ss_pred             HHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            335577788899998877  888999999999999999999999654433333333333334444455677777788899


Q ss_pred             HHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      .|++.+...+....++.+..| +++++..++......+|..+|+.++|.+.+. .|++..++..+++.++..+
T Consensus       315 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        315 WGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN-IGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHH
Confidence            999998888888888888887 5567778888888889999999999999876 7888888887766554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.35  E-value=3.3e-11  Score=121.48  Aligned_cols=149  Identities=13%  Similarity=0.066  Sum_probs=120.3

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh------------
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA------------  191 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~------------  191 (300)
                      ...+.++.+.+|.+....  +++.+.+.++.++|.++.|+++|+.++++.+..+.++.+++.+.+++.            
T Consensus       246 ~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        246 SQLPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             HHhHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            345567777789988877  999999999999999999999998887776666666655555444432            


Q ss_pred             --------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHH
Q 022246          192 --------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM  263 (300)
Q Consensus       192 --------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~  263 (300)
                              .+.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++++.+.....++...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~  403 (1140)
T PRK06814        324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI  403 (1140)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                    566777788889999999999999999999999999999999999999999999999998886443677777


Q ss_pred             HHHhHHHHHHH
Q 022246          264 FGLAAIPSILL  274 (300)
Q Consensus       264 f~~~~~~~~~~  274 (300)
                      |++.+++.++.
T Consensus       404 ~~~~~~~~~~~  414 (1140)
T PRK06814        404 ILFIALANLIV  414 (1140)
T ss_pred             HHHHHHHHHHH
Confidence            77666554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.33  E-value=1.4e-10  Score=102.47  Aligned_cols=150  Identities=17%  Similarity=0.105  Sum_probs=102.7

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc---hHHHHH-HhHHHHHHHHHHHHhhhHHHHHHH
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR---TRTFQL-DAVPLAAGAFLCATAQSVQTMIIG  200 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr---r~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~  200 (300)
                      .++|.+.++.|++.. .  +...++..++..++   .++++||..|   |+.... ..++.++...+.++..+....+++
T Consensus       213 ~wlp~~L~~~g~s~~-~--~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  286 (368)
T TIGR00903       213 IWLEAALRPAGLEDI-A--GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAF  286 (368)
T ss_pred             HHHHHHHHHCCCChH-H--HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            344544466787754 3  55566655555544   4677777654   333332 344444444444545455455556


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      .++.|++..+.++..+++.+|.+|++.|+++.|+.+....+|++++|++.+.+..   +.+..|.+.++..++.++..++
T Consensus       287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~i~~~~~~~  363 (368)
T TIGR00903       287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---SAEAYFTFLAILITIAFAIALL  363 (368)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHh
Confidence            6777777777778888999999999999999999999999999888888877653   5777888888887777666554


Q ss_pred             CCC
Q 022246          281 SPE  283 (300)
Q Consensus       281 ~pe  283 (300)
                      +++
T Consensus       364 ~~~  366 (368)
T TIGR00903       364 LPN  366 (368)
T ss_pred             CCC
Confidence            444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.33  E-value=2.7e-11  Score=104.87  Aligned_cols=166  Identities=19%  Similarity=0.075  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA  185 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~  185 (300)
                      +.+.++..|......  .+.+.-+++++|+++..++  +.....+.+...+..+.+|+|+||+|.++++......++++.
T Consensus       223 lsllY~~tFG~Fvgf--s~~l~~~~~~~fg~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~  298 (417)
T COG2223         223 LSLLYFATFGGFVGF--SAYLPMYLVTQFGLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAA  298 (417)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHH
Confidence            334444444444432  2346668999999999888  889999999999999999999999999999999998888888


Q ss_pred             HHHHHhh-------hHHH----HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          186 FLCATAQ-------SVQT----MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       186 ~~~~~~~-------~~~~----l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      .+..+..       +...    ++...++.|+|.|.    .+.++...||. +-|.+.|+......+|+.+.|...+...
T Consensus       299 ~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~  373 (417)
T COG2223         299 ALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSL  373 (417)
T ss_pred             HHHHccccccccCcchHHHHHHHHHHHHHhccCcch----heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHH
Confidence            8777653       3333    34445555555554    44566666654 6799999999999999999898888887


Q ss_pred             CCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          255 GNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       255 ~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      +....+...|++...+.+++.+..+.
T Consensus       374 ~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         374 DLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            76556999999998888777665433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.33  E-value=9.6e-11  Score=104.93  Aligned_cols=150  Identities=18%  Similarity=0.214  Sum_probs=104.9

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHH-HHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HHh-hhHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIG  200 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~-i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~  200 (300)
                      ..+++.+++|++..+.  +++..... ++..++.+++|++.||+|+|+.+..+.++.++..+..   +.. ++.+.+++.
T Consensus       232 ~~~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  309 (402)
T PRK11902        232 STTFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALA  309 (402)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            4456778899998877  78776544 4678899999999999999998877766655554332   343 355555544


Q ss_pred             H----HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          201 R----VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       201 ~----~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      .    ++.|++.+...+....++.+.+|.+.+    ++.+....+|..+++.++|.+.+. .||+..|.+.++++++.++
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~-~G~~~~f~~~~~~~~~~~~  384 (402)
T PRK11902        310 IGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEA-YGWPGFYLMTVVIALPGLA  384 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHH
Confidence            4    345566666677777777777775544    445555566666556678888776 8999999999888877766


Q ss_pred             HhhcCC
Q 022246          277 GMGLSP  282 (300)
Q Consensus       277 ~~~~~p  282 (300)
                      +.+..+
T Consensus       385 ~~~~~~  390 (402)
T PRK11902        385 LLWLMR  390 (402)
T ss_pred             HHHHHh
Confidence            654443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.32  E-value=3.9e-10  Score=99.99  Aligned_cols=137  Identities=20%  Similarity=0.305  Sum_probs=102.4

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----hhHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQTMIIG  200 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~  200 (300)
                      ...++.+++|.++.+.  +++.+...++..++.++.|++.||+|+|+.+..+.++..++.++....     ++...+++.
T Consensus       229 ~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (385)
T TIGR00710       229 APFVYIDIMGVSPSVF--GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGP  306 (385)
T ss_pred             ChHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3445667899988887  888999999999999999999999999999888877777766655443     234445556


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCchHHHHHHh
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLA  267 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~w~~~f~~~  267 (300)
                      .++.|++.+...+.......|.+| ++|+++.++.+..... |.+.+++++ .+.+. .+|...+...
T Consensus       307 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~-~~~~~~~~~~  371 (385)
T TIGR00710       307 MMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGN-TAWPMSLSCL  371 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hcccc-ChHHHHHHHH
Confidence            778889888888888889999887 6789999998776654 566666655 44333 4555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00896 CynX cyanate transporter

Probab=99.32  E-value=7.1e-11  Score=103.91  Aligned_cols=134  Identities=16%  Similarity=0.047  Sum_probs=103.2

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  203 (300)
                      ...|.+.++.|.+....  ++..+++.++..++.++.|+++||+ +||+.+..+.++.+++.+++.+.++....+ ..++
T Consensus       218 ~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  294 (355)
T TIGR00896       218 GWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV  294 (355)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence            34565556789988777  8999999999999999999999999 566677777777777776666655433322 4567


Q ss_pred             HHHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchH
Q 022246          204 AGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (300)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~  261 (300)
                      .|++.+..++.....+.+..+ +++++...++.+....+|..++|.+.|.+.+...+|.
T Consensus       295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            899998888887777776555 4567899999888888899999999999877534443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.29  E-value=1.4e-10  Score=106.33  Aligned_cols=129  Identities=15%  Similarity=0.136  Sum_probs=109.8

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH----hhhHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT----AQSVQTMIIGR  201 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~  201 (300)
                      ...++++.+|.+..+.  ++......++..++.++.|++.||+|||+++..+.++.+++.++..+    ..+++.++...
T Consensus       278 ~p~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (485)
T TIGR00711       278 LPLYLQQVLGYTALQA--GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQ  355 (485)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            4446667789998888  89999999999999999999999999999999998888888777662    23556667778


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  256 (300)
                      ++.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++
T Consensus       356 ~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       356 FIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999988878888888889999999999999999999999999998887653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10133 L-fucose transporter; Provisional

Probab=99.28  E-value=1.8e-10  Score=104.32  Aligned_cols=148  Identities=13%  Similarity=0.003  Sum_probs=113.8

Q ss_pred             hhhHHHH-HHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246          124 NGALEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV  202 (300)
Q Consensus       124 ~~~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (300)
                      .+..+++ ++.+|+++...  ++....+.++..++.+++|++.||+|+|+++..+.++.++..++..+.++.. .+...+
T Consensus       279 ~~~~~~l~~~~~g~s~~~a--g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~  355 (438)
T PRK10133        279 SYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALT  355 (438)
T ss_pred             HHHHHHHhhhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHH
Confidence            3344564 45789999888  9999999999999999999999999999999888877777666666655543 245667


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHhHHHHHHHHHH
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLALG  277 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~  277 (300)
                      +.|++.+..+|...+...+.++++ .+.+.++..+ ..+|+.++|.+.+.+.+. .| -+..|++..++.+..++.
T Consensus       356 l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~-~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHH
Confidence            899999999999999999998754 5777777764 445677777777777665 55 788888766655544444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.28  E-value=1.7e-10  Score=103.37  Aligned_cols=152  Identities=13%  Similarity=0.106  Sum_probs=112.7

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc-ccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd-~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (300)
                      ..|.+.++.+.++...  +++.++..++..++..+.+++.| |++.++.+..+.++.+++.++.+..++++.+++..++.
T Consensus       230 ~~p~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  307 (400)
T PRK11646        230 MLPIMVNDIAGSPSAV--KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF  307 (400)
T ss_pred             hhhhhHHhhcCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4555555544455555  77777776666655555566555 57767777788888888887777888888777778888


Q ss_pred             HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC--c-hHHHHHHhHHHHHHHHHHhh
Q 022246          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL--W-WRTMFGLAAIPSILLALGMG  279 (300)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~-w~~~f~~~~~~~~~~~~~~~  279 (300)
                      +++.+...+....++.+..|+++||+++|+.+....+|..+||.++|.+.+...  + ....+++.++++++..+...
T Consensus       308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence            888888888889999999999999999999999999999999999999976521  2 34555555555555554433

>PRK09669 putative symporter YagG; Provisional

Probab=99.27  E-value=1.7e-10  Score=104.73  Aligned_cols=160  Identities=14%  Similarity=0.111  Sum_probs=116.1

Q ss_pred             hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCc-hHHHHHHhHHHHHHHHHHHHhhh----
Q 022246          123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGR-TRTFQLDAVPLAAGAFLCATAQS----  193 (300)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Gr-r~~~~~~~~~~~~~~~~~~~~~~----  193 (300)
                      ..+...++.+++|++....  |.+..+..+..++..|+.|+++||    +|| |+.++.+.+..++..++....++    
T Consensus        29 ~~~l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~  106 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGAT  106 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            3446778899999999888  999999999999999999999998    777 45566676777776665554432    


Q ss_pred             --HHHHHHHHHHHHHhhhhhhhhhhhhhhccC-CcccchhhHHHHHHHHHHHHHHHHHhhhhcc----C--CCCchHHHH
Q 022246          194 --VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLA----G--NPLWWRTMF  264 (300)
Q Consensus       194 --~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~--~~~~w~~~f  264 (300)
                        ...+++..++.+.+......+..++.+|+. ++++|.+..++...+..+|..+++.+...+.    .  ...+|+..+
T Consensus       107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~  186 (444)
T PRK09669        107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAM  186 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence              455566666777777777778889999988 5578998888877777777766655433221    1  125788888


Q ss_pred             HHhHHHHHHHHHHh-hcCCCC
Q 022246          265 GLAAIPSILLALGM-GLSPES  284 (300)
Q Consensus       265 ~~~~~~~~~~~~~~-~~~pe~  284 (300)
                      ++.+++.+++.+.. +..+|.
T Consensus       187 ~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        187 MVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHHHhCCeEEe
Confidence            88888776655443 334543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.26  E-value=5.4e-10  Score=99.82  Aligned_cols=145  Identities=15%  Similarity=0.078  Sum_probs=111.9

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  205 (300)
                      ..+++++.+|.++.+.  |++.+...++..++.++.+++.||.++|+++..+. +.++..++.++.++++.+++..++.|
T Consensus       228 ~~~~~~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G  304 (393)
T PRK11195        228 VLAWAPVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIG  304 (393)
T ss_pred             HHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3456777889998887  99999999999999999999999999998887775 34444555566677777777788899


Q ss_pred             HhhhhhhhhhhhhhhccCCccc-chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246          206 IGIGISSAIVPLYISEISPTEI-RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  275 (300)
                      ++.+...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+..  .|-++.+++.++..++.+
T Consensus       305 ~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        305 ALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK--LGVPVVAVIVGFGLLVAL  373 (393)
T ss_pred             HhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHH
Confidence            9988888888888888766554 6999999999999999999998887744  444444444444333433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.26  E-value=1.2e-10  Score=104.77  Aligned_cols=132  Identities=15%  Similarity=-0.072  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH-h-----hhHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 022246          147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-A-----QSVQTMIIGRVLAGIGIGISSAIVPLYIS  220 (300)
Q Consensus       147 ~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~-~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~  220 (300)
                      ..+..+...++.+++|+|+||+|+|+++.++.++.+++.+.... .     .+++.+++..+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            34455677888999999999999999999888877776543222 1     24555554444444444444455556666


Q ss_pred             ccCCc---------------------ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh
Q 022246          221 EISPT---------------------EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM  278 (300)
Q Consensus       221 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  278 (300)
                      +.||.                     ++-|.+.|+......+|+++.|.+.+...+...++...|++..+..+++.++.
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  450 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLT  450 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            66663                     14578899999999999988887766666554779999999888887776543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.23  E-value=4.4e-10  Score=103.41  Aligned_cols=127  Identities=13%  Similarity=0.041  Sum_probs=108.9

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh---hhHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTMIIGRV  202 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~  202 (300)
                      ...+++..+|.+..+.  +.....+.++..++.++.|++.||+|+|+++..+.++.+++.++....   ++.+...+..+
T Consensus       282 ~~~~lq~v~g~s~~~a--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  359 (495)
T PRK14995        282 MAQELQFVHGLSPLEA--GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMA  359 (495)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            4557788899999888  899999999999999999999999999999988888887776655432   35556667788


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      +.|++.|...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.
T Consensus       360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888889999999999999999999999999998888887764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.22  E-value=5.8e-10  Score=99.46  Aligned_cols=122  Identities=15%  Similarity=0.131  Sum_probs=82.3

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022246          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI  206 (300)
Q Consensus       127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  206 (300)
                      ..++.+++|.+..+.  +...+...++..++.++.+++.||+|||+++..+.++..++.++..+.++....+...++.++
T Consensus       227 ~~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  304 (392)
T PRK10473        227 PVLLMEQMGFSRGEY--AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICA  304 (392)
T ss_pred             HHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667889988877  888888999999999999999999999999999988888888777776655544444444444


Q ss_pred             hhhhhhhhhhhhhhccCCcccc-hhhHHHHHHHHHHHHHHHHHhhhh
Q 022246          207 GIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLP  252 (300)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~  252 (300)
                      +.+..++..  ...+..|.++| +.+.++..++..+|..+++.+.+.
T Consensus       305 g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~  349 (392)
T PRK10473        305 GFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAV  349 (392)
T ss_pred             HHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433332  33444454444 555555555555555555544443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.22  E-value=9.5e-10  Score=96.05  Aligned_cols=158  Identities=13%  Similarity=0.094  Sum_probs=128.6

Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH
Q 022246           96 KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ  175 (300)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~  175 (300)
                      .+..+++|.++.+.++..+.+.+.+..+++...+....|| +.+..  -|...+|++.+....+++-|+.||+|-|..+.
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l  113 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALL  113 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence            3567788999888888888888777777777788888888 44444  69999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHhh------hHH--HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246          176 LDAVPLAAGAFLCATAQ------SVQ--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (300)
Q Consensus       176 ~~~~~~~~~~~~~~~~~------~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (300)
                      ++..+.+++..+-..+.      .++  ..+.+..+.+..+-.....-.-+..-||++++|+.+..+-.++..+|.+++.
T Consensus       114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~  193 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF  193 (480)
T ss_pred             HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence            99999999988766542      334  4455666666666555555556778899999999999999999999999999


Q ss_pred             HhhhhccCC
Q 022246          248 VAGLPLAGN  256 (300)
Q Consensus       248 ~~~~~~~~~  256 (300)
                      ++...+..+
T Consensus       194 llppilV~~  202 (480)
T KOG2563|consen  194 LLPPILVPS  202 (480)
T ss_pred             hccceecCC
Confidence            988888754

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.22  E-value=1.5e-09  Score=96.79  Aligned_cols=163  Identities=18%  Similarity=0.207  Sum_probs=121.0

Q ss_pred             HHhhhhhHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-hhHHHH
Q 022246          120 LGVVNGALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTM  197 (300)
Q Consensus       120 ~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l  197 (300)
                      ...+..+.+.+.++.| .+....  +...++..+.-++.-.+.+++..|+|.|+++.++.+.+++=..+.+.. ++.+..
T Consensus       223 ~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~  300 (400)
T PF03825_consen  223 HAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFI  300 (400)
T ss_pred             HHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            3334445555566666 666655  666677777777888889999999999999999999988888888776 454443


Q ss_pred             HHH----HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHH-HHHHHHHHHHHhhhhccCCC-----CchHHHHHHh
Q 022246          198 IIG----RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQL-FICVGILAALVAGLPLAGNP-----LWWRTMFGLA  267 (300)
Q Consensus       198 ~~~----~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-----~~w~~~f~~~  267 (300)
                      ++.    ..+.|+..+........++.+..|++.|+++.++++. ...+|..+|.+++|.+.+..     ..|...+.+.
T Consensus       301 ~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~  380 (400)
T PF03825_consen  301 VALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVF  380 (400)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            333    3569999999999999999999999999999999776 46789999999999998751     2345556666


Q ss_pred             HHHHHHHHH-HhhcCCCC
Q 022246          268 AIPSILLAL-GMGLSPES  284 (300)
Q Consensus       268 ~~~~~~~~~-~~~~~pe~  284 (300)
                      +++.++..+ ++++.+|+
T Consensus       381 a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  381 AVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHhhccCC
Confidence            665555444 33445554

>PRK09848 glucuronide transporter; Provisional

Probab=99.22  E-value=2.8e-10  Score=103.44  Aligned_cols=127  Identities=15%  Similarity=0.119  Sum_probs=98.6

Q ss_pred             hHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHH
Q 022246          126 ALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRV  202 (300)
Q Consensus       126 ~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~  202 (300)
                      ..+ ++++.+|.+....  ++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+  +++.+++..+
T Consensus       250 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  327 (448)
T PRK09848        250 SSLFYVRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA  327 (448)
T ss_pred             hheeeEeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence            344 3444567654433  4444444667788899999999999999999999988888777666643  5666777788


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcc-------cchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          203 LAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      +.|+|.+...+...++.+|..+.+       .+|...++++....+|..+++.+.+.+.
T Consensus       328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999988754       3489999999999999999988887764

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.21  E-value=1.5e-09  Score=96.18  Aligned_cols=125  Identities=10%  Similarity=0.081  Sum_probs=88.1

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HHh-hhHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIGR  201 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~~  201 (300)
                      ...++.+.+|.++.+.  ++..+...++..++.++.|++.||+|||+.+..+.++..+..+..   ... .+.+.+++..
T Consensus       217 ~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (377)
T PRK11102        217 GPFVYIELNGVSPQNF--GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGV  294 (377)
T ss_pred             CHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4456677789998887  899999999999999999999999999999888876644433222   221 2344444444


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHH-HHHHHHHHHHhhhhc
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPL  253 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~  253 (300)
                      .+.+.+.+........++.|..| +.++.+.++.+.. ..+|..+++++++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~  346 (377)
T PRK11102        295 AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAP  346 (377)
T ss_pred             HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44444455555566667778776 7889999986654 456777888776543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.21  E-value=6.7e-10  Score=101.65  Aligned_cols=159  Identities=12%  Similarity=0.100  Sum_probs=113.9

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc----ccCc-hHHHHHHhHHHHHHHHHHHHhh------
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGR-TRTFQLDAVPLAAGAFLCATAQ------  192 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd----~~Gr-r~~~~~~~~~~~~~~~~~~~~~------  192 (300)
                      .+...++.+.+|++....  |.+..+.-+..++..|+.|+++|    |+|| |+.++.+.+..+++.+++...+      
T Consensus        27 ~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~  104 (473)
T PRK10429         27 MYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTA  104 (473)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccH
Confidence            346667888889998888  99999999999999999999999    5698 6666677777777766654432      


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccC-CcccchhhHHHHHHHHHHHHHHHHHhhhhc----c--CCCCchHHHHH
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPL----A--GNPLWWRTMFG  265 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--~~~~~w~~~f~  265 (300)
                      .+..+++..++.+++.........+++.|+. ++++|.+..++-..+..+|+.+.+.+...+    .  +...+|++..+
T Consensus       105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~  184 (473)
T PRK10429        105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTL  184 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence            1334555666778888888888899999999 588999988886666666654444333221    1  11246888877


Q ss_pred             HhHHHHHHHHHH-hhcCCCC
Q 022246          266 LAAIPSILLALG-MGLSPES  284 (300)
Q Consensus       266 ~~~~~~~~~~~~-~~~~pe~  284 (300)
                      +.+++.+++.+. ++..+|.
T Consensus       185 i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        185 VLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHHcCceec
Confidence            777776665443 3446765

>TIGR00901 2A0125 AmpG-related permease

Probab=99.20  E-value=5.7e-10  Score=98.20  Aligned_cols=113  Identities=12%  Similarity=0.153  Sum_probs=90.4

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHH-HHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----------hh
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----------QS  193 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~-i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----------~~  193 (300)
                      ..+.+.+++|.+.++.  +.+..+.. ++..++.+++|+++||+|||+.++.+.++.++...+..+.           ++
T Consensus       231 ~~~~~l~~~g~~~~~~--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (356)
T TIGR00901       231 LTTLFLLDMGFSKEEI--ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH  308 (356)
T ss_pred             HHHHHHHHcCCCHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence            3444444589988887  77776655 5678899999999999999999888888877766654442           34


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHH
Q 022246          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFIC  240 (300)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  240 (300)
                      .+.++.+.++.+++.+...+...+++.|.+|+++||+.+|+.+....
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            56677788899999999999999999999999999999999876543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.20  E-value=2e-10  Score=100.36  Aligned_cols=123  Identities=28%  Similarity=0.350  Sum_probs=102.2

Q ss_pred             hhhhHHH-HHHHhCCC-hhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh---hhHHHH
Q 022246          123 VNGALEY-LAKDLGIA-ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTM  197 (300)
Q Consensus       123 ~~~~~~~-~~~~~~~s-~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l  197 (300)
                      .....|. +.+++|.+ ..+.  ++..++..++..++.++.|+++||+|+|+..........+..+...+.   .+....
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQA--GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWL  302 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHH
T ss_pred             hhcccchhhhhccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3445554 48899998 5666  888999999999999999999999999888777776666666655443   345667


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (300)
                      ++..++.|++.+...+....++.|.+|+++||++.|+.+....+|..++|
T Consensus       303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            77888899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=4.7e-11  Score=104.16  Aligned_cols=186  Identities=15%  Similarity=0.007  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHH------HHHHHH-HHHHHHHHHhhhhhhccccCchHHHHH
Q 022246          104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ------GWIVSS-LLAGATVGSFTGGSLADKFGRTRTFQL  176 (300)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------~~~~~~-~~i~~~i~~~~~g~lsd~~Grr~~~~~  176 (300)
                      ..++..+..+|+........+.....+.+.+|..+.+...      .....+ ...+++.|-.+...++|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            3455566666666666666666777888877776544310      111111 222333466677889999999999999


Q ss_pred             HhHHHHHHHHHHHHhhh----HHHHHHHHHHHHH-hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhh
Q 022246          177 DAVPLAAGAFLCATAQS----VQTMIIGRVLAGI-GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL  251 (300)
Q Consensus       177 ~~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  251 (300)
                      +++++++..+..+...|    ...++++..+..+ +.-+.......+.+|.||.+.|++.-|+....+-+|++++.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999998887655    2333333333332 333455667778899999999999999999999999999999888


Q ss_pred             hccCC----CCchHHHHHHhHHHHHHHHHHhhcCCCChhHHH
Q 022246          252 PLAGN----PLWWRTMFGLAAIPSILLALGMGLSPESPRWLF  289 (300)
Q Consensus       252 ~~~~~----~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~  289 (300)
                      .+.++    ..+.++.|++.+++.++..+..+++|||++...
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l  505 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSL  505 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence            88771    268899999999999999999999999986544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.17  E-value=7.7e-10  Score=99.96  Aligned_cols=130  Identities=25%  Similarity=0.268  Sum_probs=108.3

Q ss_pred             hhhhhHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHH
Q 022246          122 VVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMI  198 (300)
Q Consensus       122 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~  198 (300)
                      ..+...+++.++ +|.+ +..  ++...+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+  +.+.++
T Consensus       243 ~~~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (428)
T PF13347_consen  243 LMNTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVL  319 (428)
T ss_pred             hhhhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence            444455555444 5544 344  6788888999999999999999999999999999999999999888876  899999


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCCcc-------cchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          199 IGRVLAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      +..++.|++.+..+....++++|..+.+       ..|...+.++....+|..+++.+.+.+.
T Consensus       320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998742       2389999999999999998888887764

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.17  E-value=1.2e-09  Score=97.38  Aligned_cols=169  Identities=22%  Similarity=0.195  Sum_probs=117.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC-chHHHHHHhHHHHHHHHHHHHh
Q 022246          113 AILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-RTRTFQLDAVPLAAGAFLCATA  191 (300)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G-rr~~~~~~~~~~~~~~~~~~~~  191 (300)
                      .++++...+.+.+..+.+.++.|++..++  |.+.++..+...++++++|+++||++ +|+++.+..++.++..+.....
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~   88 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444445566677777888899999999  99999999999999999999999986 5677777777777777777788


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHh-hhhccCC--CCchHHHHHHhH
Q 022246          192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA-GLPLAGN--PLWWRTMFGLAA  268 (300)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~~~~~--~~~w~~~f~~~~  268 (300)
                      .+++.+++..++..+......|...++..+....  ++.-.|-.-..+.+|-+++.+. ++.+...  ..+..+.+++.+
T Consensus        89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~  166 (400)
T PF03825_consen   89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAA  166 (400)
T ss_pred             ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence            8899888888888888888888888888777652  3344444444444454444322 1111111  122345666666


Q ss_pred             HHHHHHHHHhhcCCCCh
Q 022246          269 IPSILLALGMGLSPESP  285 (300)
Q Consensus       269 ~~~~~~~~~~~~~pe~~  285 (300)
                      +..++.....+.+|++|
T Consensus       167 ~~~~ll~~~~l~lp~~~  183 (400)
T PF03825_consen  167 ILSLLLAGFALFLPKTP  183 (400)
T ss_pred             HHHHHHHHHHHhCCCCc
Confidence            66666666666778766

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.17  E-value=1.6e-10  Score=101.72  Aligned_cols=141  Identities=13%  Similarity=0.075  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 022246          143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI  222 (300)
Q Consensus       143 ~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  222 (300)
                      .|++.++..+.-++.-.+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+.......-|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH-hhcCCCC
Q 022246          223 SPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGLSPES  284 (300)
Q Consensus       223 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~pe~  284 (300)
                      +|++..++...+ ++....+|.++.+.++|.+.+. .|.+..|++.+.+.++..++ .+.+++.
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-IGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-cCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            999988888877 5678889999999999999887 89999998888887665554 4445443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.16  E-value=1.3e-13  Score=125.27  Aligned_cols=161  Identities=17%  Similarity=0.090  Sum_probs=105.8

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH----HhhhH---
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA----TAQSV---  194 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~----~~~~~---  194 (300)
                      ......+.+.+..+.+.. .   .......+...++.+++.++.||+|||++++.+.++.+++.+..+    ...+.   
T Consensus       271 ~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (451)
T PF00083_consen  271 FIFYYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSW  346 (451)
T ss_pred             cccccccccccccccccc-c---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344466777777887766 2   222333344556777788999999999999999888887777664    11111   


Q ss_pred             --HHHHHHHHHHH-HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHhHHH
Q 022246          195 --QTMIIGRVLAG-IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIP  270 (300)
Q Consensus       195 --~~l~~~~~l~G-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~~~~  270 (300)
                        ...+++-.+.. ....+..+..+.+..|.||++.|+++.++......++.++++.+...+.+. .+ +...+...++.
T Consensus       347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~i~~~~~  425 (451)
T PF00083_consen  347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-LGGWGVFLIFAGVC  425 (451)
T ss_pred             cccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccchhhHHHH
Confidence              11122222222 222244567778899999999999999999999999999888888777655 33 43333334444


Q ss_pred             HHHHHHHhhcCCCChhH
Q 022246          271 SILLALGMGLSPESPRW  287 (300)
Q Consensus       271 ~~~~~~~~~~~pe~~~~  287 (300)
                      .+...+.++++|||++.
T Consensus       426 ~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  426 LIAIIFVYFFLPETKGK  442 (451)
T ss_pred             HHHHhheeEEEeeCCCC
Confidence            44445566779999753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.16  E-value=2.2e-09  Score=91.85  Aligned_cols=154  Identities=21%  Similarity=0.193  Sum_probs=106.7

Q ss_pred             HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 022246          129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGI  208 (300)
Q Consensus       129 ~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  208 (300)
                      .+-+++|+++.++  +.+.....+..++..++.|.++||+|||+..+...+++++.++ +-..+++..+++.|++.|++.
T Consensus        59 ~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   59 ALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHH
Confidence            3446899999998  7888888888899999999999999999999998888888885 445688999999999999999


Q ss_pred             hhhhhhhhhhhh-cc----CCcccchhhHHHHH-HHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHHHHHhhc-
Q 022246          209 GISSAIVPLYIS-EI----SPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGMGL-  280 (300)
Q Consensus       209 ~~~~~~~~~~~~-~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~~~~-  280 (300)
                      +..++.--+++. |.    +|.+..+.-++... ..+.+-.+++.+++-.+.+. ..|-..+|....++.+++.+++.. 
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~  215 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT  215 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence            998888777553 33    23332233333222 22222233344444444332 234577888877777766665543 


Q ss_pred             CCCCh
Q 022246          281 SPESP  285 (300)
Q Consensus       281 ~pe~~  285 (300)
                      .+|++
T Consensus       216 W~ENy  220 (354)
T PF05631_consen  216 WPENY  220 (354)
T ss_pred             ccccC
Confidence            56654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.16  E-value=4.1e-10  Score=101.75  Aligned_cols=158  Identities=22%  Similarity=0.227  Sum_probs=122.9

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc----ccCchHHH-HHHhHHHHHHHHHHHHh-h-----
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTF-QLDAVPLAAGAFLCATA-Q-----  192 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd----~~Grr~~~-~~~~~~~~~~~~~~~~~-~-----  192 (300)
                      .+..+++.+.+|+++...  +.+..+.-+..++..|+.|.++|    |+|||+.+ +.+.++.+++.+++... +     
T Consensus        22 ~~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~   99 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF   99 (428)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence            357788889999999888  89999999999999999999999    89976654 46778888887777655 4     


Q ss_pred             --hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhccC----CC--CchHHH
Q 022246          193 --SVQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAG----NP--LWWRTM  263 (300)
Q Consensus       193 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~--~~w~~~  263 (300)
                        ....+++..++..++.........++..|+.+ +++|.+..++-..+..+|.++...+.+.+..    ..  .+|++.
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~  179 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM  179 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence              23345666777788888888999999999998 4789999999888888888655555555442    11  179999


Q ss_pred             HHHhHHHHHHHHHH-hhcCCC
Q 022246          264 FGLAAIPSILLALG-MGLSPE  283 (300)
Q Consensus       264 f~~~~~~~~~~~~~-~~~~pe  283 (300)
                      .++.+++.++..++ .+..+|
T Consensus       180 ~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  180 ALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHhhhhhheeee
Confidence            99998888776554 455677

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.14  E-value=4.3e-09  Score=89.34  Aligned_cols=155  Identities=28%  Similarity=0.439  Sum_probs=121.9

Q ss_pred             HHHHhhhhhHHHHHHHhCCChh--hhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhh--
Q 022246          118 YHLGVVNGALEYLAKDLGIAEN--TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS--  193 (300)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~--  193 (300)
                      ..........+.+..+++.+..  ..  ++..+.+.++..++.++.|.++||+|||+.++.+.....++.+.+++..+  
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG   93 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence            4445555677777777776652  45  78999999999999999999999999998888887765666666666665  


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCc-ccchhhHHHHHH-HHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHH
Q 022246          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQL-FICVGILAALVAGLPLAGN-PLWWRTMFGLAAIP  270 (300)
Q Consensus       194 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~  270 (300)
                      .+.+++.|++.|++.+...+....++.|.+|. ++|+...++... ...+|..+++++++.+... ..+||+.|++....
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            88899999999999999999999999999998 678888888887 5777888888777665432 35799977777666


Q ss_pred             HHHH
Q 022246          271 SILL  274 (300)
Q Consensus       271 ~~~~  274 (300)
                      ....
T Consensus       174 ~~~~  177 (338)
T COG0477         174 GLLL  177 (338)
T ss_pred             HHHH
Confidence            5433

>PRK11043 putative transporter; Provisional

Probab=99.13  E-value=8.2e-09  Score=92.36  Aligned_cols=128  Identities=13%  Similarity=0.127  Sum_probs=96.4

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH---HH--hhhHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---AT--AQSVQTMIIG  200 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~  200 (300)
                      ..|.+.+++|.+..+.  ++......++..++.++.+++.||+|+|+.+....++.+++.+..   ..  .++.+.+++.
T Consensus       225 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        225 GSPFILEQMGYSPADI--GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            4555667789988777  777777888888999999999999999987665555444443322   22  2355555566


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  256 (300)
                      ..+.|++.+..++.......+..| ++||++.++++.....++.+++.+.+.+.+.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            677888888888888888888776 5799999999988887888888888777654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.12  E-value=1.1e-09  Score=100.30  Aligned_cols=128  Identities=13%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH-----hhhHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-----AQSVQTMIIG  200 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~  200 (300)
                      ..+++.+...-+.+..  +++.++..++..++.+++++++||+|+|+.+.++.++.+++.+....     ..+.+.+++.
T Consensus       253 ~~~y~~~y~~~~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  330 (473)
T PRK10429        253 FAIYYFTYVIGDADLF--PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIA  330 (473)
T ss_pred             heeeEEEEECCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Confidence            3444444433333333  56667777888899999999999999999998888776655544432     3456666677


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCC-----cccc--hhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          201 RVLAGIGIGISSAIVPLYISEISP-----TEIR--GALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~-----~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      -++.|++.+...+...++++|..+     ..+|  |..+++......+|..+++.+.|.+.+
T Consensus       331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999955     3333  778899999999999999888887653

>PRK09669 putative symporter YagG; Provisional

Probab=99.11  E-value=2.2e-09  Score=97.51  Aligned_cols=112  Identities=16%  Similarity=0.145  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--AQSVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (300)
                      +.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+  ..+.+.+++..++.|++.+...+..+++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556667777888899999999999999998887766654432222  3466677777889999999999999999999


Q ss_pred             cCCcc-------cchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          222 ISPTE-------IRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       222 ~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      ..+.+       ..|..++++.....+|..+++.+++.+.+
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88622       23677888888889999999998888754

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.07  E-value=2.3e-09  Score=96.90  Aligned_cols=164  Identities=16%  Similarity=0.160  Sum_probs=111.6

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc--------hHHH-HHHhHHHHHHHHHHHHhh
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR--------TRTF-QLDAVPLAAGAFLCATAQ  192 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr--------r~~~-~~~~~~~~~~~~~~~~~~  192 (300)
                      ...+.+.|+.+.+|++..+.  |+..++..+...+..+++|.++||.-+        ||++ .++....+++.+..++.+
T Consensus       277 l~~y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  277 LLTYLPTYLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             HHHHhhHHHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            44556668888999999888  999999999999999999999998754        2332 345555666666666655


Q ss_pred             h--H-HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC--CCchHHHHHHh
Q 022246          193 S--V-QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--PLWWRTMFGLA  267 (300)
Q Consensus       193 ~--~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~w~~~f~~~  267 (300)
                      +  . ..++++-+..++ .|...+..+.-..|. -+++-+..+|+.+....+.++++|.+.+.+..+  ...|++.|++.
T Consensus       355 ~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~  432 (466)
T KOG2532|consen  355 DEHRLLAVILLTIAIGL-SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIA  432 (466)
T ss_pred             CCcchHHHHHHHHHHHH-cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHH
Confidence            2  2 122211111121 122222222233333 456679999999999999999999999999853  24799999999


Q ss_pred             HHHHHHHHHHhhcC--CCChhHHH
Q 022246          268 AIPSILLALGMGLS--PESPRWLF  289 (300)
Q Consensus       268 ~~~~~~~~~~~~~~--pe~~~~~~  289 (300)
                      +++.++..+++.++  -|..+|..
T Consensus       433 a~i~~~~~i~f~~f~s~e~~~w~~  456 (466)
T KOG2532|consen  433 AGILIVGNIIFLFFGSGEPAPWTK  456 (466)
T ss_pred             HHHHHHhchheeEeecCcccCccC
Confidence            99988877655554  34444544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.07  E-value=2.7e-08  Score=84.89  Aligned_cols=176  Identities=17%  Similarity=0.081  Sum_probs=134.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHH
Q 022246           98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQL  176 (300)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~  176 (300)
                      +.+..|.+...+.+..+.++    .....+|.+..|.|+|..++  |+..+...+......+....+.+|. .+|+..+.
T Consensus       206 ~~~~aW~vtLfmGlqS~~~Y----~~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~  279 (395)
T COG2807         206 RSPLAWQVTLFMGLQSLLYY----IVIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVL  279 (395)
T ss_pred             cCchhHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            33445655555555555543    33347788888899999999  9999999999999999999999954 67888888


Q ss_pred             HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcc-cchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE-IRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      ...++.++.+.+.+.+....++- .++.|+|.|+.++.....+.+-.... +-+.-.++.+....+=..+||.+.|++.|
T Consensus       280 ~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD  358 (395)
T COG2807         280 ALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD  358 (395)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence            88888888887777765433332 48999999999999999999887654 34666777777777777899999999988


Q ss_pred             CCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          256 NPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       256 ~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      ...+|+..++..+...+++.++-+.
T Consensus       359 a~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         359 ATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhh
Confidence            7789999988887777666554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.04  E-value=2.3e-08  Score=91.56  Aligned_cols=136  Identities=20%  Similarity=0.123  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHhhhh----hhccc-cCchHHH--HHHhHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHh
Q 022246          144 GWIVSSLLAGATVGSFTGG----SLADK-FGRTRTF--QLDAVPLAAGAFLCAT---------AQSVQTMIIGRVLAGIG  207 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g----~lsd~-~Grr~~~--~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~  207 (300)
                      +++.++..+...+.+++..    ++.+| .+.+...  .+|+++.+++.+..++         ..+++++++..++.++|
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            5777777777777776644    45554 3333433  6788888888777664         45889999999999999


Q ss_pred             hhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      .....|..+.++.+..|++.||+++|++.....+|..+++.+....... .+|.+.|...++..++..++.++
T Consensus       395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP-QGVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888776554 67888888887777665554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.04  E-value=1.8e-08  Score=92.72  Aligned_cols=137  Identities=16%  Similarity=0.093  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHhhh----hhhccccCchHHHHHHhHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHhhhh
Q 022246          144 GWIVSSLLAGATVGSFTG----GSLADKFGRTRTFQLDAVPLAAGAFLCATAQS---------VQTMIIGRVLAGIGIGI  210 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~----g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~l~G~~~~~  210 (300)
                      +++.++..+...+..++.    +++.+|++..+.+.+|+++.+++.+..+...+         .++++...++.|+++..
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            455555555555555544    77777777778889999999999888776654         45788899999999999


Q ss_pred             hhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc-----CC----CCchHHHHHHhHHHHHHHHHHhhc
Q 022246          211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-----GN----PLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~----~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      ..|...+++.+..|++.||+++|.+.....+|..++..+.....     ..    ..++.+.|...++.++++.++.+.
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888877766664221     11    124678888888777655443333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.03  E-value=2.7e-09  Score=99.27  Aligned_cols=181  Identities=17%  Similarity=0.161  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH
Q 022246          104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA  183 (300)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~  183 (300)
                      ..+.+.++..+...+..+.+...+..+.+.|+++..+.  |++.+.+-++..+...+..++.-|.-|-+.+-.|.+++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            34455556666666666777889999999999999998  9999999999999999999999999888888899999999


Q ss_pred             HHHHHHHh--------------------h-----------------------------h--HH-HHHHHHHHHHHhhhhh
Q 022246          184 GAFLCATA--------------------Q-----------------------------S--VQ-TMIIGRVLAGIGIGIS  211 (300)
Q Consensus       184 ~~~~~~~~--------------------~-----------------------------~--~~-~l~~~~~l~G~~~~~~  211 (300)
                      +.+++++-                    +                             +  ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            99888741                    0                             0  22 4566779999999999


Q ss_pred             hhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC------------------CchHHHHHHhHHHHHH
Q 022246          212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP------------------LWWRTMFGLAAIPSIL  273 (300)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------------~~w~~~f~~~~~~~~~  273 (300)
                      ++....|+-|...+++-+..+|++.....+|.++|-+++++....+                  .-|..-|++.+.+.++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            9999999999999998899999999999999999999998875311                  1266677777888877


Q ss_pred             HHHHhhcCCCChh
Q 022246          274 LALGMGLSPESPR  286 (300)
Q Consensus       274 ~~~~~~~~pe~~~  286 (300)
                      ..+.++++|++.+
T Consensus       335 ~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  335 SAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHhCcccCc
Confidence            7887788776543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.01  E-value=2.3e-08  Score=89.85  Aligned_cols=143  Identities=9%  Similarity=-0.083  Sum_probs=102.5

Q ss_pred             hhhHHHHHHHh-CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246          124 NGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV  202 (300)
Q Consensus       124 ~~~~~~~~~~~-~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (300)
                      ++..++..+.. +.+....  +...+.+..+..+|.++++++.||+++|+++.++.++.++..++....++... +.+.+
T Consensus       253 s~l~~y~~~~~~~~~~~~a--~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~  329 (410)
T TIGR00885       253 TFIIQYAVRLIPGMTAGFA--ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLT  329 (410)
T ss_pred             HHHHHHHhhccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHH
Confidence            33445554321 3333333  45566667888999999999999999999999988888888888877766544 45667


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-----CchHHHHHHhHHHH
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-----LWWRTMFGLAAIPS  271 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~w~~~f~~~~~~~  271 (300)
                      +.|++.+..+|.......+..+++.+..+.++.. + .+|+.+.|.+.|.+.+..     .+.+..|++..++-
T Consensus       330 ~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~  401 (410)
T TIGR00885       330 LCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF  401 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence            7888889999999999999998765433333333 2 388898999999988741     25778887654443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.96  E-value=1.1e-07  Score=84.86  Aligned_cols=128  Identities=17%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH-HHHHHHHH--hhhHHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA-AGAFLCAT--AQSVQTMIIGRV  202 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~-~~~~~~~~--~~~~~~l~~~~~  202 (300)
                      ...++.+.+|.+..+.  ++......++..++.++.+++.||++++........+.+ +.......  ..+.+.+++..+
T Consensus       230 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T PRK11652        230 SGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAA  307 (394)
T ss_pred             ChHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            3345666689988777  888888888888999999999999984433322222222 22222222  235566777788


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  256 (300)
                      +.|++.+...+....+..|.+| +++|.+.++.+....+|..+++.+++.+...
T Consensus       308 ~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        308 LFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            9999999999999999999887 5789999999999999999999999887654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.96  E-value=3.8e-09  Score=94.11  Aligned_cols=167  Identities=19%  Similarity=0.165  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH
Q 022246          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA  189 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~  189 (300)
                      ++..+..+.....+..++=.-.+|.+-.+.-.  |....+-..+-++.-++.++|..|+|+-+++.+++++..+=.+...
T Consensus       377 f~~av~mG~g~~lv~tFLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S  454 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS  454 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence            33444445555555556666677777655555  7777777777788888999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHH-HHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246          190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (300)
Q Consensus       190 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~  268 (300)
                      +..|.|+.+..-+++|+..+..+..+.+|+++..||+.|+++.+++... ..+|--+|.++||.+... .|-|..|++.+
T Consensus       455 ~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-fg~~ttf~~~g  533 (618)
T KOG3762|consen  455 YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-FGARTTFRIFG  533 (618)
T ss_pred             HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-ehhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999996654 567888999999999876 88899999998


Q ss_pred             HHHHHHHHHhh
Q 022246          269 IPSILLALGMG  279 (300)
Q Consensus       269 ~~~~~~~~~~~  279 (300)
                      +.+++..+...
T Consensus       534 iAcl~~l~~~~  544 (618)
T KOG3762|consen  534 IACLVTLALFI  544 (618)
T ss_pred             HHHHHHHHHHH
Confidence            88877655443

>PRK11462 putative transporter; Provisional

Probab=98.95  E-value=3.1e-08  Score=90.32  Aligned_cols=159  Identities=17%  Similarity=0.133  Sum_probs=118.3

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCchH-HHHHHhHHHHHHHHHHHHhhh-----
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTR-TFQLDAVPLAAGAFLCATAQS-----  193 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr~-~~~~~~~~~~~~~~~~~~~~~-----  193 (300)
                      .+.+.++.+.+|++....  |.+..+.-+.-++.-|+.|.++||    +|||+ .++++.+..++..+++...++     
T Consensus        30 ~~l~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~  107 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNG  107 (460)
T ss_pred             HHHHHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcch
Confidence            346667888999998888  999999999999999999999996    68765 455676777777766655442     


Q ss_pred             -HHHHHHHHHHHHHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhccCC------CCchHHHHH
Q 022246          194 -VQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGN------PLWWRTMFG  265 (300)
Q Consensus       194 -~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~w~~~f~  265 (300)
                       ...+++...+..++......+..++.+|+.+ +++|.+..++...+..+|..+++.+...+...      ..+|+....
T Consensus       108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~  187 (460)
T PRK11462        108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIA  187 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence             3455666677788888888888899999997 68999999999988888877776664433211      136888877


Q ss_pred             HhHHHHHHHHHHhh-cCCCC
Q 022246          266 LAAIPSILLALGMG-LSPES  284 (300)
Q Consensus       266 ~~~~~~~~~~~~~~-~~pe~  284 (300)
                      +.+++.+++.++.+ ..+|.
T Consensus       188 i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        188 VLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHHHhcceec
Confidence            77777666554433 34554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.95  E-value=6.7e-09  Score=91.54  Aligned_cols=116  Identities=19%  Similarity=0.215  Sum_probs=86.7

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH--hh--hHHHHHH
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--AQ--SVQTMII  199 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~--~~--~~~~l~~  199 (300)
                      .....++.+.+|.+..+.  ++..++..++..++.+++|+++||+|||+.+..+..+.+.+..+..+  ..  +...+++
T Consensus       246 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (366)
T TIGR00886       246 SIFAMFFKDQFGLSKVTA--GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV  323 (366)
T ss_pred             HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            345557777889988887  88888899999999999999999999998887776666665554443  22  5555555


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHH
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG  242 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  242 (300)
                      ..++.+++.|...+....++.+.+| +++|.+.|+++....+|
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            5555566666666677778888887 68999999988776654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=2.1e-08  Score=90.46  Aligned_cols=175  Identities=21%  Similarity=0.178  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHH----HHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246          104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSS----LLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (300)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~  179 (300)
                      .+....++..+..++..........+....++.+..... +.....    ..+...+..+..|.++||+|||..+...++
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            344444555555555555555566666666655433221 233333    356677888999999999999999999888


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 022246          180 PLAAGAFLCATAQSVQTMIIGRVLAGI--GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP  257 (300)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~l~G~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  257 (300)
                      ...+..+...+.. +| +++   +.++  +.+..++...++++|....++|...+|+.......+..++|.+++.+... 
T Consensus       101 ~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~-  174 (463)
T KOG2816|consen  101 GTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF-  174 (463)
T ss_pred             HHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-
Confidence            8777776666655 33 333   3333  23456788889999999999999999999999999999999999998876 


Q ss_pred             CchHHHHHHhHHHHHHHHH-HhhcCCCCh
Q 022246          258 LWWRTMFGLAAIPSILLAL-GMGLSPESP  285 (300)
Q Consensus       258 ~~w~~~f~~~~~~~~~~~~-~~~~~pe~~  285 (300)
                      .|.-..|.+..+..++..+ ..+++||+.
T Consensus       175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  175 LGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             cCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            7888889988888877665 456678864

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=3.7e-08  Score=91.16  Aligned_cols=177  Identities=15%  Similarity=0.035  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246          108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (300)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~  187 (300)
                      .+.+..+..........++.+.+.+..|.+.+..   +...+..+...++..++..+.||+|||+.++.+.+.++++.++
T Consensus       299 ~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~---~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~  375 (513)
T KOG0254|consen  299 GLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTF---LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI  375 (513)
T ss_pred             HHHHHHHHHHhCCceEEeehHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence            3344444444555566677888888888875432   4455555666777788899999999999999999999999887


Q ss_pred             HHHhhhH-------------HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          188 CATAQSV-------------QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       188 ~~~~~~~-------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      ++.....             ..+...-++......+..++.+.+.+|.+|.+.|+++.++......+...+-........
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~  455 (513)
T KOG0254|consen  376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT  455 (513)
T ss_pred             HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7754211             122222233333334445677788999999999999999977777666544333322222


Q ss_pred             CCCCchHHHHHHhHHHHHH-HH-HHhhcCCCChhHH
Q 022246          255 GNPLWWRTMFGLAAIPSIL-LA-LGMGLSPESPRWL  288 (300)
Q Consensus       255 ~~~~~w~~~f~~~~~~~~~-~~-~~~~~~pe~~~~~  288 (300)
                      .. .++...|.+.+..+.+ .. .+++++|||+...
T Consensus       456 ~~-~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s  490 (513)
T KOG0254|consen  456 EA-LGIGGTFGYFGGICLLSLIIFVFFFVPETKGLT  490 (513)
T ss_pred             Hh-ccccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence            22 2234445444444433 44 4667789997543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.90  E-value=4.2e-08  Score=92.36  Aligned_cols=154  Identities=19%  Similarity=0.198  Sum_probs=119.6

Q ss_pred             hhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhHHHHHHHHHHHHhhh--------H
Q 022246          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQS--------V  194 (300)
Q Consensus       124 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~  194 (300)
                      ..+..++.+.+|.+.+.+  ..+...+....-+.++++|+++|+ +||++.+.++.++..++.++.++...        .
T Consensus         8 aiLvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~   85 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD   85 (654)
T ss_pred             HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence            345667777889988777  556666666666778899999995 79999999999999999887776421        2


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhccCCccc---chhhHHHHHHHHHHHHHHHHHhhhhccCC------CCchHHHHH
Q 022246          195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGN------PLWWRTMFG  265 (300)
Q Consensus       195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~w~~~f~  265 (300)
                      ...+++.++.++|.|+.-+...+...|.+++++   |-..+.+++.+.++|+++++++.+.+...      ..+|...|.
T Consensus        86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926        86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            335566778888999999999999999997643   56788888999999999998888887632      246999999


Q ss_pred             HhHHHHHHHHHHhh
Q 022246          266 LAAIPSILLALGMG  279 (300)
Q Consensus       266 ~~~~~~~~~~~~~~  279 (300)
                      +.+++.++.+++..
T Consensus       166 i~~i~m~ia~lvf~  179 (654)
T TIGR00926       166 VPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888877665443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.88  E-value=2e-08  Score=88.70  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=93.9

Q ss_pred             HHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH--HH-HHHHHh----
Q 022246          120 LGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA--GA-FLCATA----  191 (300)
Q Consensus       120 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~--~~-~~~~~~----  191 (300)
                      .++..++.+ .+.++.|++.++.  |.+.++..+...+.+++.|.++||+|.||-++....+..+  +. +...+.    
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~  100 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ  100 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445444 5666799999999  9999999999999999999999999977765543322221  22 121222    


Q ss_pred             hhH-HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHH
Q 022246          192 QSV-QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP  270 (300)
Q Consensus       192 ~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~  270 (300)
                      .|. ...++.-.+.|+...+..++.-+++-++.  +..+.-.|-.-+.+.+|.+++..++|.+.+  .+-...||+..+.
T Consensus       101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~--i~p~~~fwi~s~~  176 (412)
T PF01306_consen  101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN--INPNIIFWIASAA  176 (412)
T ss_dssp             TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee--eCccHHHHHHHHH
Confidence            232 22233333344444444445444444432  223566666777888888888889988864  4567888887776


Q ss_pred             HHHHHHHhhcC
Q 022246          271 SILLALGMGLS  281 (300)
Q Consensus       271 ~~~~~~~~~~~  281 (300)
                      +++..++.++.
T Consensus       177 ~~il~lll~~~  187 (412)
T PF01306_consen  177 AIILLLLLLLL  187 (412)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHHHc
Confidence            66555544443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=98.87  E-value=1.6e-07  Score=85.35  Aligned_cols=127  Identities=15%  Similarity=0.219  Sum_probs=86.8

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc----CchHHH-HHHhHHHHHHHHHHH-H----hh--
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF----GRTRTF-QLDAVPLAAGAFLCA-T----AQ--  192 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~----Grr~~~-~~~~~~~~~~~~~~~-~----~~--  192 (300)
                      +...++++.+|++..+.  |.+.++..+..++..+++|+++||.    |||+.+ ..+.+...+..++.. .    ..  
T Consensus        30 ~l~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (448)
T PRK09848         30 FLLSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSS  107 (448)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcch
Confidence            35568888899998888  9999999999999999999999996    766644 455554444433322 1    11  


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCc-ccchhhHHHHHHH-----HHHHHHHHHHhhhhc
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLF-----ICVGILAALVAGLPL  253 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~-----~~~g~~~~~~~~~~~  253 (300)
                      ....+++..++.+++.+...+...++..++... ++|....++-..+     ..++..++|++++..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            223344555677888888887777777776654 6788776665433     334556677766543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.86  E-value=3.3e-10  Score=104.38  Aligned_cols=175  Identities=20%  Similarity=0.216  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHH
Q 022246          108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (300)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~  187 (300)
                      ..++..+.+.+..+.....++.+++.|+++..+.  |++.+.+-++..+..++..++.+|..|-+.+-.|.++.+++.++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence            3344444445666677778899999999999999  99999999999999999999999988888888899999999887


Q ss_pred             HHHhh--------------------------------------------------hHHHHHHHHHHHHHhhhhhhhhhhh
Q 022246          188 CATAQ--------------------------------------------------SVQTMIIGRVLAGIGIGISSAIVPL  217 (300)
Q Consensus       188 ~~~~~--------------------------------------------------~~~~l~~~~~l~G~~~~~~~~~~~~  217 (300)
                      +++-+                                                  -+..++++.++.|+|....+++..+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            76310                                                  0244677889999999999999999


Q ss_pred             hhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC---------------------CchHHHHHHhHHHHHHHHH
Q 022246          218 YISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------------------LWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       218 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------~~w~~~f~~~~~~~~~~~~  276 (300)
                      |+-|..+++.-+..+|++.....+|.++|-++++.+...+                     ..|-.-|++.+++.++..+
T Consensus       165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai  244 (539)
T PF03137_consen  165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI  244 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998775310                     1154556666666666666


Q ss_pred             HhhcCCCC
Q 022246          277 GMGLSPES  284 (300)
Q Consensus       277 ~~~~~pe~  284 (300)
                      .++++|+.
T Consensus       245 pl~~FPk~  252 (539)
T PF03137_consen  245 PLFFFPKK  252 (539)
T ss_dssp             --------
T ss_pred             HHHcCCcc
Confidence            66666653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11462 putative transporter; Provisional

Probab=98.84  E-value=2.6e-07  Score=84.27  Aligned_cols=111  Identities=14%  Similarity=0.040  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (300)
                      +.+...+.++.+++.+++++++||+|+|+++..+.++.++..++..+.+  +...+++.-++.|++.+...+..+++++|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888899999999999999999987755554444333333322  23334445566788777777777777777


Q ss_pred             cCCc-----ccc--hhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          222 ISPT-----EIR--GALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       222 ~~~~-----~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      ..+-     .+|  |..++.......+|..+++.+++.+.
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7652     234  55556666777778877777776654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.83  E-value=1.8e-07  Score=85.86  Aligned_cols=137  Identities=17%  Similarity=0.090  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHH-------HHHHhHHHHHHHHHHH-----Hh-----hhHHHHHHHHHHHHH
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRT-------FQLDAVPLAAGAFLCA-----TA-----QSVQTMIIGRVLAGI  206 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~~~l~G~  206 (300)
                      .++.++..+...+..++.+++.||+|+|+.       +.+|+++.+++.+..+     +.     .+.++++...++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            455666666677788889999999999973       6677777666654321     11     356778888899999


Q ss_pred             hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC---------CCchHHHHHHhHHHHHHHHHH
Q 022246          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN---------PLWWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~w~~~f~~~~~~~~~~~~~  277 (300)
                      |.+...++...++.+..|++.+|.++|++.....+|..++..++......         ...+.+.|...++..+++.++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988887654210         013567787777777665554


Q ss_pred             hhc
Q 022246          278 MGL  280 (300)
Q Consensus       278 ~~~  280 (300)
                      .++
T Consensus       472 ~~~  474 (489)
T PRK10207        472 MAL  474 (489)
T ss_pred             HHH
Confidence            444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.83  E-value=6.9e-08  Score=86.27  Aligned_cols=120  Identities=21%  Similarity=0.282  Sum_probs=95.5

Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhhhhh
Q 022246          135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISS  212 (300)
Q Consensus       135 ~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~  212 (300)
                      +++..+....+.......+.+++.+++.+|.+|+|+|+++..+.++++++.++..+.+  +.+.++++.++.+++.+...
T Consensus       266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~  345 (467)
T COG2211         266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN  345 (467)
T ss_pred             EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccc
Confidence            3443443335667777777777799999999999999999999999999998888765  67788888899999999999


Q ss_pred             hhhhhhhhccCCc-----ccc--hhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          213 AIVPLYISEISPT-----EIR--GALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       213 ~~~~~~~~~~~~~-----~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      +..+++++|...-     .+|  |...+.+....-+|..++..+.+++.
T Consensus       346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887643     233  78888888888888877776666654

>TIGR00788 fbt folate/biopterin transporter

Probab=98.80  E-value=1.3e-08  Score=92.87  Aligned_cols=123  Identities=9%  Similarity=0.038  Sum_probs=104.6

Q ss_pred             HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH----------hhhHHHHHHHH
Q 022246          132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT----------AQSVQTMIIGR  201 (300)
Q Consensus       132 ~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~  201 (300)
                      ..+|.++...  |.+.....++..++..+.+++.+|++.|+++.++.++.+++.+....          .++.+.++...
T Consensus       281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            5689998888  89999999999999999999999999999999999988887754321          13333445556


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  256 (300)
                      ++.+++.+..+.+...++.+..|++.+|+..++..+...+|..+++.+++.+.+.
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888899999999999999999999999999999999999998888653

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.80  E-value=2.6e-07  Score=82.62  Aligned_cols=161  Identities=20%  Similarity=0.199  Sum_probs=122.8

Q ss_pred             hhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCch-HHHHHHhHHHHHHHHHHHHhhh----
Q 022246          123 VNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRT-RTFQLDAVPLAAGAFLCATAQS----  193 (300)
Q Consensus       123 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr-~~~~~~~~~~~~~~~~~~~~~~----  193 (300)
                      ..+.+-++.+.+|++...+  |.+..+.=+.-++.-|+.|.++||    +||+ |.++.+.+.+++..+++..+++    
T Consensus        32 ~~yLl~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~  109 (467)
T COG2211          32 VLYLLFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMT  109 (467)
T ss_pred             HHHHHHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccC
Confidence            3446667888999998888  888888888899999999999995    6754 5566777888888888887763    


Q ss_pred             --HHHHHHHHHHHHHhhhhhhhhhhhhhhccCC-cccchhhHHHHHHHHHHHHHHHHHhhhhc----cCC--CCchHHHH
Q 022246          194 --VQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPL----AGN--PLWWRTMF  264 (300)
Q Consensus       194 --~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~~~--~~~w~~~f  264 (300)
                        ....++...+.+++......+..++.+|+.+ ++||....++-..+..+|.++..++...+    ...  ..||+...
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~  189 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTA  189 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence              4556677889999999999999999999985 58899999998888888755444333332    222  45899888


Q ss_pred             HHhHHHHHHHHHHhhc-CCCCh
Q 022246          265 GLAAIPSILLALGMGL-SPESP  285 (300)
Q Consensus       265 ~~~~~~~~~~~~~~~~-~pe~~  285 (300)
                      ++.+++.++..++.++ .+|.+
T Consensus       190 ~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         190 LVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhccc
Confidence            8888888777665554 56654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.76  E-value=3.3e-07  Score=79.48  Aligned_cols=148  Identities=17%  Similarity=0.124  Sum_probs=111.7

Q ss_pred             HHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246          120 LGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMI  198 (300)
Q Consensus       120 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (300)
                      ......+++ ++.+..|+++.+.  ....+.+..+..+|.+++.++..|+...|++.+..++..+.++..++.++...++
T Consensus       252 Eva~gsfl~~y~~~~~g~~~~~a--a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~  329 (422)
T COG0738         252 EVAIGSFLVSYLEELLGLNEQQA--AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY  329 (422)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            334444444 5555588888888  8999999999999999999999999999999999888888888888888865554


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (300)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~  273 (300)
                       .-++.|++.+..+|...+...+..+ ++-..+.++ .....+|+.+-|.+-|++.+. .+-...+.....++.+
T Consensus       330 -~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~-l~maivGGAiiP~l~G~i~d~-~g~~~~~~~~pllc~l  400 (422)
T COG0738         330 -ALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGL-LVMAIVGGAIIPPLQGVIADM-FGIQLTFLIVPLLCYL  400 (422)
T ss_pred             -HHHHHHHHhHHHHHHHHHHHHhccC-cccccccee-eeeheecchHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence             4567889999999999999999998 433344343 344456777777788888776 6666666644444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3.2e-08  Score=85.35  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=119.2

Q ss_pred             hhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHHHHHhhhHHHHH
Q 022246          122 VVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCATAQSVQTMI  198 (300)
Q Consensus       122 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (300)
                      ..-+.++ ...|.+..+..+.  |...--..+.+.++..+.|.++||++  |-.....+++..++.+....+++++.+++
T Consensus       288 fLePtlslwm~e~m~~p~w~~--G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~  365 (464)
T KOG3764|consen  288 FLEPTLSLWMLETMFTPGWEV--GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW  365 (464)
T ss_pred             HhCcccHHHHHHhccCCCcce--eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence            3344444 3667777444455  66666677889999999999999999  64444556777777777888899999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCCcc------cchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246          199 IGRVLAGIGIGISSAIVPLYISEISPTE------IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       199 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  272 (300)
                      +-++..+++.+...+.......++...+      .-|...++...+..+|.++||.++|.+.+. .|++|...+.++..+
T Consensus       366 vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-iGF~wl~~iig~~n~  444 (464)
T KOG3764|consen  366 VPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-IGFEWLMTIIGILNL  444 (464)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-hhHHHHHHHHHHHHH
Confidence            9999999988887777776666666443      337888889999999999999999999877 899999988888877


Q ss_pred             HHHHHhh
Q 022246          273 LLALGMG  279 (300)
Q Consensus       273 ~~~~~~~  279 (300)
                      +..-+.+
T Consensus       445 iyapvl~  451 (464)
T KOG3764|consen  445 IYAPVLL  451 (464)
T ss_pred             HHHHHHH
Confidence            7654433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.74  E-value=1.8e-07  Score=84.45  Aligned_cols=153  Identities=20%  Similarity=0.182  Sum_probs=117.1

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-----CchHHHHHHhHHHHHHHHHHHHhh----hHH
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRTFQLDAVPLAAGAFLCATAQ----SVQ  195 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-----Grr~~~~~~~~~~~~~~~~~~~~~----~~~  195 (300)
                      ...+++.+++|+++.+.  ....++..+--. ..+++|.++|-+     .||+-++++.++.+++.+.++..+    +..
T Consensus        11 ~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQL--QRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            36678999999999887  666666665544 478899999976     366666777777766555555433    456


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhccCCc--ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246          196 TMIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (300)
Q Consensus       196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~  273 (300)
                      ...++.++..+|......+.-+++.|....  +.||...+.......+|.+++..++|.+.+. .++++.|.+.+++.++
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-~~~~~~f~i~~~~~~l  166 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-FGPQGVFLISAALPLL  166 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCeEEehHHHHHHHH
Confidence            666777888899999999999999998843  3367888888888999999999999998876 7899999998888777


Q ss_pred             HHHHhhcC
Q 022246          274 LALGMGLS  281 (300)
Q Consensus       274 ~~~~~~~~  281 (300)
                      ..+..+++
T Consensus       167 ~~~~~~~~  174 (433)
T PF03092_consen  167 MLIVALFL  174 (433)
T ss_pred             HHHHHHHh
Confidence            66554444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.7e-09  Score=89.12  Aligned_cols=153  Identities=17%  Similarity=0.074  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhH
Q 022246          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAV  179 (300)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~  179 (300)
                      ++...+..+|+..|..++.+-.......+...+.+++.++.  .++-++|..-.++-++++|++.|| +|-|+.-++-..
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~  118 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI  118 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence            44556666677677666665555555666777777777666  677888888888899999999996 688876666555


Q ss_pred             HHHHHHHHHH---HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          180 PLAAGAFLCA---TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       180 ~~~~~~~~~~---~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      ...++.++++   ..+.+|.+++.||+.|+|.-..-..-+.+...+|..+|.+.++|+......+|..+--.+.+++.+
T Consensus       119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            5666665554   468899999999999998766666677899999999999999999999999998766655555543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.71  E-value=1.2e-06  Score=76.52  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=122.2

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc-ccCchHHHHHHhHHHHHHHHHHH---HhhhHHHHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCA---TAQSVQTMIIGR  201 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd-~~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~  201 (300)
                      .-||=.+.||++..+.  ..++.....|..+|-...|++.. |.++++.-..++.+.+++..+..   ...+.+.+...-
T Consensus       231 LEPygg~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~  308 (403)
T PF03209_consen  231 LEPYGGEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV  308 (403)
T ss_pred             cCCchhHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            5577888899999888  78899999999999988888776 67777777777777666655443   345778888889


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC---------CCCchHHHHHHhHHHHH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~w~~~f~~~~~~~~  272 (300)
                      ++.|++.|.+.....+.+.|+..+++.|..+|.+...+.++..++.++++.+.+         ...+|...|.+.+++.+
T Consensus       309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~  388 (403)
T PF03209_consen  309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL  388 (403)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            999999999988889999999999989999999999999999999988888754         12467788888877766


Q ss_pred             HHHHHh
Q 022246          273 LLALGM  278 (300)
Q Consensus       273 ~~~~~~  278 (300)
                      +++++.
T Consensus       389 ~a~~ll  394 (403)
T PF03209_consen  389 AALVLL  394 (403)
T ss_pred             HHHHHH
Confidence            665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.71  E-value=5.5e-07  Score=81.78  Aligned_cols=142  Identities=16%  Similarity=0.047  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCc-hHHHHHHhHHHHHHHHHHHHhhh---------------------HHHHHHHH
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCATAQS---------------------VQTMIIGR  201 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~  201 (300)
                      .+....+.+...+..++..++.+++|+ |.+..++.++.+++.+...+..+                     .+..++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            355556666666777788889999995 77778898888888777765443                     36677888


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcc--cchhhHHHHHHHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHHHHHh
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGM  278 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~~  278 (300)
                      .+.|+..+..+.+-++++++..+++  ..|..+|+++.+..+.+++..+..|.+... ..+-.+.+.+.++..++.+++.
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999954  449999999999999999888777774332 2345678888888888876654


Q ss_pred             -hcCCCCh
Q 022246          279 -GLSPESP  285 (300)
Q Consensus       279 -~~~pe~~  285 (300)
                       +.+|+++
T Consensus       468 ~~~~~~~~  475 (477)
T TIGR01301       468 LILLPRPR  475 (477)
T ss_pred             HHhCCCCC
Confidence             4567764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.65  E-value=4.2e-06  Score=75.36  Aligned_cols=141  Identities=15%  Similarity=0.082  Sum_probs=87.2

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhc-cccCchHHHHHHhHHHHHHHHHHH-----HhhhHHHHHHH
Q 022246          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA-DKFGRTRTFQLDAVPLAAGAFLCA-----TAQSVQTMIIG  200 (300)
Q Consensus       127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~ls-d~~Grr~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~  200 (300)
                      +.++++.+|.+..+.  ++.......+..++..+.+.+. |+.++|. +.....+..++.++..     ..+++..+++.
T Consensus       242 P~~l~~~~g~s~~~~--gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~  318 (413)
T PRK15403        242 PVILIDAGGMTTSQF--AWTQVPVFGAVIVANAIVARFVKDPTEPRF-IWRAVPIQLVGLALLIVGNLLWPHVWLWSVLG  318 (413)
T ss_pred             hHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCchhH-HHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            345666779998888  8887777778888878777765 4444443 3222222222222211     12334345667


Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~  273 (300)
                      .++.++|.+...+......-.. ....+|++.++.+.....+..+++.+++++...  +=++.|...+.+..+
T Consensus       319 ~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~  388 (413)
T PRK15403        319 TSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN--GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHH
Confidence            7888888888777776433221 223479999999888888888888888887553  335555555544433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.63  E-value=2e-06  Score=75.85  Aligned_cols=177  Identities=16%  Similarity=0.056  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHH
Q 022246          107 GVACLGAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA  185 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~  185 (300)
                      ..+|+..|+-.+ ...-.+..|++.+. .|++.++.. .-+.-+..-.+....++...++|.+|.|++++++.+...+..
T Consensus         8 ~llc~~gf~~~f-rPsEPfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~   85 (412)
T PF01770_consen    8 LLLCLFGFFKEF-RPSEPFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITW   85 (412)
T ss_pred             HHHHHHHHHHhc-CCCCccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            344444444333 22333466777775 788887763 344444445566777889999999999999999999988888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC-CCCchHHHH
Q 022246          186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-NPLWWRTMF  264 (300)
Q Consensus       186 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~w~~~f  264 (300)
                      ++.-+.++...+-+..++.|++.+. ..+.++++--..++++-.++.++......+|.+++.++|-.+.. ...+++...
T Consensus        86 ~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~  164 (412)
T PF01770_consen   86 LLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLN  164 (412)
T ss_pred             HHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            8888999999999999999998765 67777888888888887899999888888888888888877765 236678887


Q ss_pred             HHhHHHHHHHHHHhhcCCCChh
Q 022246          265 GLAAIPSILLALGMGLSPESPR  286 (300)
Q Consensus       265 ~~~~~~~~~~~~~~~~~pe~~~  286 (300)
                      ++......+.++..+++|..++
T Consensus       165 ~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  165 YISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCc
Confidence            7777766667777777776543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.62  E-value=2.2e-06  Score=65.67  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCC
Q 022246          145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP  224 (300)
Q Consensus       145 ~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (300)
                      ...++......+++++.+.+.+++|.|+.++++.+++.+..... +-++.+.++..-++.|++.+..+.....++.+...
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            34555666677888889999999999999999999988666554 45677888899999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          225 TEIRGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      ++.|++..+++......+.++|.++...+
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888887766554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.60  E-value=1.4e-06  Score=80.86  Aligned_cols=154  Identities=21%  Similarity=0.143  Sum_probs=108.4

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHH---HHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT---MIIGRV  202 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~  202 (300)
                      .+......+|.+..     ............+....+.+.|++|||+....+.++..++.++.++......   ..+...
T Consensus       340 gl~~~~~~lg~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (521)
T KOG0255|consen  340 GLSLNVSGLGGNIY-----LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPL  414 (521)
T ss_pred             hhhhhhhhcCchHH-----HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            45555555664432     2333333345555666689999999999999999999999999888765433   455556


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHH-HHHhhcC
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL-ALGMGLS  281 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~  281 (300)
                      +..++.+..+.....+.+|++|+..|+.+.+.......+|.+++|.+..........+....  .+.+..+. .+..+++
T Consensus       415 ~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~l  492 (521)
T KOG0255|consen  415 LGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL--FGWLALLLGLLSLLLL  492 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH--HHHHHHHHHHHHHhcC
Confidence            66666777777789999999999999999999999999999999998865543212222222  34444444 4455788


Q ss_pred             CCChh
Q 022246          282 PESPR  286 (300)
Q Consensus       282 pe~~~  286 (300)
                      ||+..
T Consensus       493 pet~~  497 (521)
T KOG0255|consen  493 PETKG  497 (521)
T ss_pred             cccCC
Confidence            98753

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.56  E-value=6.3e-07  Score=60.68  Aligned_cols=79  Identities=18%  Similarity=0.192  Sum_probs=71.7

Q ss_pred             HHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHH
Q 022246          117 GYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT  196 (300)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  196 (300)
                      ++....+.+.+|.++++.++|.++.  +|+.+...+|+.+|.+...++.++..+++.+..+.+...+..+.+++..+++.
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            4556677889999999999999999  99999999999999999999999988899999999999999999999887765


Q ss_pred             H
Q 022246          197 M  197 (300)
Q Consensus       197 l  197 (300)
                      +
T Consensus        83 w   83 (85)
T PF06779_consen   83 W   83 (85)
T ss_pred             H
Confidence            4

Note that many members are hypothetical proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.56  E-value=3.6e-06  Score=78.01  Aligned_cols=160  Identities=18%  Similarity=0.158  Sum_probs=115.4

Q ss_pred             hHHHHHHHhCCChh---hhHHHHHHHHHHHHHHHHHhhhhhhccccCchH-HHHHHhHHHHHHHHHHHHh--hhHHHHHH
Q 022246          126 ALEYLAKDLGIAEN---TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-TFQLDAVPLAAGAFLCATA--QSVQTMII  199 (300)
Q Consensus       126 ~~~~~~~~~~~s~~---~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~-~~~~~~~~~~~~~~~~~~~--~~~~~l~~  199 (300)
                      ++..+..-|+-+..   ..  ++....+.++..+|.++.|.+.-+++|-| .++++.+++.+++.+++..  .|....+.
T Consensus       333 ~p~~~~~vf~~d~~~~~~~--~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~  410 (599)
T PF06609_consen  333 WPQQVVNVFGSDPISITEI--GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIA  410 (599)
T ss_pred             HHHHHhhhccCCCccccee--ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHH
Confidence            44445555655442   34  67888888889999999999998887644 4556766666554444432  35555667


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC----------------------
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP----------------------  257 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------------  257 (300)
                      .-++.|++.|+...+....+.-..|.+.-|++.++....-.+|+.+|.-+...+..+.                      
T Consensus       411 ~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~s  490 (599)
T PF06609_consen  411 FLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESS  490 (599)
T ss_pred             HHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhh
Confidence            7889999999888888877777888888899999998888888877766554332100                      


Q ss_pred             ---------------------------------------CchHHHHHHhHHHHHHHHHHhhcCCCChhH
Q 022246          258 ---------------------------------------LWWRTMFGLAAIPSILLALGMGLSPESPRW  287 (300)
Q Consensus       258 ---------------------------------------~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~  287 (300)
                                                             .++|+.|+....+++++++..+|+++..+.
T Consensus       491 l~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~  559 (599)
T PF06609_consen  491 LPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKY  559 (599)
T ss_pred             HHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence                                                   238899999988899999998998876543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.56  E-value=4.3e-07  Score=82.66  Aligned_cols=161  Identities=14%  Similarity=0.009  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHH-hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCchHHHHHHhHHHH
Q 022246          108 VACLGAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTRTFQLDAVPLA  182 (300)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr~~~~~~~~~~~  182 (300)
                      ..+++.++.....+.+..++|.+.++ .|++..+.  +.+.+.+.++.+++.+++|+++||    ..+|..+.....++.
T Consensus       277 ~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a--~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  277 PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA--NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh--ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            33445555555555667778877777 56887777  889999999999999999999999    677777666665555


Q ss_pred             HHH-HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccc-hhhHHHHHHHHHHHHHHHHHhhhhccCCCCch
Q 022246          183 AGA-FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (300)
Q Consensus       183 ~~~-~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w  260 (300)
                      +.. +......+........+....+.....+.......+....+.| -...+....+...+++++|.+-.......++|
T Consensus       355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~  434 (495)
T KOG2533|consen  355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGW  434 (495)
T ss_pred             HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhh
Confidence            544 3333333333333333444445556667777777777766655 34444455555555555554443332222577


Q ss_pred             HHHHHHhHHH
Q 022246          261 RTMFGLAAIP  270 (300)
Q Consensus       261 ~~~f~~~~~~  270 (300)
                      .+.|.+....
T Consensus       435 ~~~f~~~~~~  444 (495)
T KOG2533|consen  435 GAVFYMLVAA  444 (495)
T ss_pred             hhHHHHHHHH
Confidence            7777444333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.54  E-value=9.7e-06  Score=74.00  Aligned_cols=145  Identities=19%  Similarity=0.153  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHH-hHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHhhhhhhhhhhhh
Q 022246          142 LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLD-AVPLAAGAFLCATA-Q-SVQTMIIGRVLAGIGIGISSAIVPLY  218 (300)
Q Consensus       142 ~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~-~~~~~~~~~~~~~~-~-~~~~l~~~~~l~G~~~~~~~~~~~~~  218 (300)
                      ..++..++..+..++..|+.|.++|+-|+||.++.. ..+..++++++.+. + +++...++.++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788888888999999999999999877766554 44444555555553 3 44444555666667888888899999


Q ss_pred             hhccCCcccc--------------------------hhhHHHHHHHHHHHHHHHHHhhhhccCC-------CCchHHHHH
Q 022246          219 ISEISPTEIR--------------------------GALGSVNQLFICVGILAALVAGLPLAGN-------PLWWRTMFG  265 (300)
Q Consensus       219 ~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~w~~~f~  265 (300)
                      +.|+.+++.+                          ++..+.-...+.+|+++.-++.-.+...       ..+-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999888                          8888888888888887766655443211       133588888


Q ss_pred             HhHHHHHHHHH-HhhcCCCChh
Q 022246          266 LAAIPSILLAL-GMGLSPESPR  286 (300)
Q Consensus       266 ~~~~~~~~~~~-~~~~~pe~~~  286 (300)
                      +.++..++..+ .++++||.|+
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC
Confidence            88888766655 5556777654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.45  E-value=1.2e-05  Score=70.46  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=97.5

Q ss_pred             HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC-----chHHHH-HHhHHHHHHHHHHHH-----hh------
Q 022246          130 LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQ-LDAVPLAAGAFLCAT-----AQ------  192 (300)
Q Consensus       130 ~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G-----rr~~~~-~~~~~~~~~~~~~~~-----~~------  192 (300)
                      +..|++++..-.  +...++..+... ..+.+|+.||+.+     ||..++ .|.++.+.+..+..+     ..      
T Consensus         6 MIvEL~vpA~lv--~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGVPAWLV--ALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             HHHHhccHHHHH--HHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            456788876665  777777776554 5889999999998     776665 455555554443332     11      


Q ss_pred             --hH-H--HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHH
Q 022246          193 --SV-Q--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (300)
Q Consensus       193 --~~-~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~  262 (300)
                        .+ +  ...+...+.|+|.+.......++++|..|+++|+++.++......+|.+++.++.+.+.+....-|.
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL  157 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL  157 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence              12 2  2345568889999999999999999999999999999999999999999999999988876333343

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.42  E-value=1.7e-06  Score=58.05  Aligned_cols=68  Identities=22%  Similarity=0.260  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH
Q 022246          112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (300)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~  181 (300)
                      .+++.+...+...+..+...++.|++..+.  |.+.++..+...++++++|+++||+|+++.++....++
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            344455555666777887888899999999  99999999999999999999999999999877665543

>TIGR01272 gluP glucose/galactose transporter

Probab=98.39  E-value=1.4e-06  Score=75.28  Aligned_cols=96  Identities=21%  Similarity=0.157  Sum_probs=79.5

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-----------
Q 022246          189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-----------  257 (300)
Q Consensus       189 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------  257 (300)
                      +...++..+++..++.|.|.+...+..+.++++..+++++++.+++.+..+.+|.+++|++++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            345789999999999999999999999999999999999999999999999999999999999776321           


Q ss_pred             ----CchHHHHHHhHHHHHHHHHHhhc--CCCC
Q 022246          258 ----LWWRTMFGLAAIPSILLALGMGL--SPES  284 (300)
Q Consensus       258 ----~~w~~~f~~~~~~~~~~~~~~~~--~pe~  284 (300)
                          ..|++.|++.+.+.++..+++.+  +||.
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~  117 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPEL  117 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence                36999999776665555444434  4553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.29  E-value=1.2e-05  Score=69.49  Aligned_cols=123  Identities=10%  Similarity=0.107  Sum_probs=105.8

Q ss_pred             HHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 022246          131 AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGI  208 (300)
Q Consensus       131 ~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  208 (300)
                      .+.+|+++.+.  |.+.+...++.++.+....+..||..  -+-.+..++.++.-..++.+.++....+.+.-.+-.+..
T Consensus       289 ~~rfg~ss~~~--G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~  366 (451)
T KOG2615|consen  289 HGRFGYSSMQQ--GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFST  366 (451)
T ss_pred             cCccCCChhhh--eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence            36788988888  88888888888888888889999887  666777777777777788888888888888888888888


Q ss_pred             hhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          209 GISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      +...+-...++....|..+||..+|+......++-++||+++|.+..
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            88788888888999999999999999999999999999999988754

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.29  E-value=8.6e-05  Score=67.94  Aligned_cols=131  Identities=13%  Similarity=0.064  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCc--h----HH-HHHHhHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHh
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGR--T----RT-FQLDAVPLAAGAFLCATA---------QSVQTMIIGRVLAGIG  207 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr--r----~~-~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~~  207 (300)
                      +|..++..+...+..|+.+++-.|.+|  |    +. +.+|+++.+++.+.+.++         .+.+++++..+++++|
T Consensus       311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            577888777777777877777666532  2    11 566777777776555431         2567788899999999


Q ss_pred             hhhhhhhhhhhhhccCCcccchhhHHHHHHH-HHHHHHHHHHhhhhccCC-----------CCchHHHHHHhHHHHHHH
Q 022246          208 IGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGN-----------PLWWRTMFGLAAIPSILL  274 (300)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-----------~~~w~~~f~~~~~~~~~~  274 (300)
                      +-...|+..+.++++.|++.||..+|.+... ..+|..++..++......           ...+...|...++..+++
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998764 467777777776655311           023666777777666544

>PTZ00207 hypothetical protein; Provisional

Probab=98.22  E-value=3.6e-05  Score=71.72  Aligned_cols=164  Identities=11%  Similarity=-0.027  Sum_probs=111.9

Q ss_pred             hhhhhHHHHHHHh-CCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc--------hHH-HHHHhHHHHHHHHHHHHh
Q 022246          122 VVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR--------TRT-FQLDAVPLAAGAFLCATA  191 (300)
Q Consensus       122 ~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr--------r~~-~~~~~~~~~~~~~~~~~~  191 (300)
                      ++..-+.++.+.+ |.+.++.......+++.+++.+|.+..|.++...-+        |++ +.+..+ +.++.+++++.
T Consensus       371 ~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~  449 (591)
T PTZ00207        371 VIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLT  449 (591)
T ss_pred             eeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHH
Confidence            4444556777888 763333100237888999999999999988822222        222 333333 55555555555


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHH-HHhhhhccCCC----C-----c--
Q 022246          192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA-LVAGLPLAGNP----L-----W--  259 (300)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~----~-----~--  259 (300)
                      -....+++..++.|++.|..+++...+++|+|. ++-|+-..+......+|..+- -.+.|.+.+..    .     |  
T Consensus       450 ~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~  528 (591)
T PTZ00207        450 LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERV  528 (591)
T ss_pred             CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCce
Confidence            433688999999999999999999999999999 878888888888888888654 56666665420    1     1  


Q ss_pred             -hHHHHHHhHHHHHHHHHHhhc-CCCChhH
Q 022246          260 -WRTMFGLAAIPSILLALGMGL-SPESPRW  287 (300)
Q Consensus       260 -w~~~f~~~~~~~~~~~~~~~~-~pe~~~~  287 (300)
                       ++..|.+.++++++..++... .-++.++
T Consensus       529 C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~  558 (591)
T PTZ00207        529 CVVMPLAFLLGLSFLAFITSTYVHLQYRRL  558 (591)
T ss_pred             eeHhHHHHHHHHHHHHHHHHhheeeehHHH
Confidence             788999988888777665443 3344433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.21  E-value=0.00023  Score=64.56  Aligned_cols=127  Identities=10%  Similarity=0.025  Sum_probs=91.5

Q ss_pred             hHHHHHHHhCCCh-----hhhHHHHHHHHHHHHHHHH-HhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh--h-----
Q 022246          126 ALEYLAKDLGIAE-----NTVLQGWIVSSLLAGATVG-SFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--Q-----  192 (300)
Q Consensus       126 ~~~~~~~~~~~s~-----~~~~~~~~~~~~~i~~~i~-~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~--~-----  192 (300)
                      .+-.+.+.+.++.     +..  .++-+...+...+. .++.+++++|++|++++-.....+.+...++++.  +     
T Consensus        25 iLR~lKD~lvv~~~~~gae~i--~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~  102 (472)
T TIGR00769        25 ILRDTKDTLVVTAKGSGAEII--PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLL  102 (472)
T ss_pred             HHHhhhhheeecccCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence            5667788877632     233  67766665555554 7889999999999999877666666665554432  1     


Q ss_pred             ------------------------hHHHHHHHHHHHHHhhhhhhh-hhhhhhhccCCcccchhhHHHHHHHHHHHHHHHH
Q 022246          193 ------------------------SVQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (300)
Q Consensus       193 ------------------------~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (300)
                                              +.|...++.+...+......+ +-+.++.|.+..++-.+-.+++..+.++|.++++
T Consensus       103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg  182 (472)
T TIGR00769       103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSG  182 (472)
T ss_pred             CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    122333444455555555555 7889999999999999999999999999999999


Q ss_pred             Hhhhhcc
Q 022246          248 VAGLPLA  254 (300)
Q Consensus       248 ~~~~~~~  254 (300)
                      .+...+.
T Consensus       183 ~~~~~~~  189 (472)
T TIGR00769       183 RTIKYFS  189 (472)
T ss_pred             HHHHHHH
Confidence            8877765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.19  E-value=6.9e-05  Score=69.71  Aligned_cols=156  Identities=18%  Similarity=0.163  Sum_probs=117.8

Q ss_pred             HhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHHHhhh------
Q 022246          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQS------  193 (300)
Q Consensus       121 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~~~~~------  193 (300)
                      +.....+.++.+++|.+...+  ....+.+.-.....++++++++|-| ||-+++.++.++..++.++..++..      
T Consensus        55 g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             cchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            345668899999999987655  5666777666777789999999975 8999999988888888665543211      


Q ss_pred             -------------------HHHHHHHHHHHHHhhhhhhhhhhhhhhccCC---cccc---hhhHHHHHHHHHHHHHHHHH
Q 022246          194 -------------------VQTMIIGRVLAGIGIGISSAIVPLYISEISP---TEIR---GALGSVNQLFICVGILAALV  248 (300)
Q Consensus       194 -------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~r---~~~~~~~~~~~~~g~~~~~~  248 (300)
                                         ...++....+..+|.|+.-+...++-+|.++   ++++   ...+.++....++|..++-.
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence                               1245556677778999999999999999998   3322   46778888888999988888


Q ss_pred             hhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246          249 AGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (300)
Q Consensus       249 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~  279 (300)
                      +.-++.++ .+|.+.|.+..+..+++.++++
T Consensus       213 ~~vyiq~~-~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  213 VLVYIQDN-VGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             HHHhhhhc-ccceeeccHHHHHHHHHHHHHH
Confidence            77777655 8999999988877766655443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.06  E-value=3.6e-05  Score=68.29  Aligned_cols=109  Identities=18%  Similarity=0.175  Sum_probs=87.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcc---cchhhHHHHHHHH
Q 022246          172 RTFQLDAVPLAAGAFLCATAQ---------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE---IRGALGSVNQLFI  239 (300)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  239 (300)
                      |++.++.+++.++.++..++.         +...++++.++.++|.|+.-+....+.+|.++++   +|...+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567778888888887744432         2356788889999999999999999999999876   3577888899999


Q ss_pred             HHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246          240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (300)
Q Consensus       240 ~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~  281 (300)
                      ++|..+++.+.+++.++ .+|.+.|++.++..+++.+.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~-~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQN-YGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHC-S-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccc-cchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999876 899999999998887777665553

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.05  E-value=0.00025  Score=62.74  Aligned_cols=106  Identities=21%  Similarity=0.136  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHH--HHH---HHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL--AAG---AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLY  218 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~--~~~---~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  218 (300)
                      .+...+|.+|-.++.--...+  |+  |++.+...+-.  .+.   ..+.-+.++.|.+++.-+..|+..|+.+......
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            677888887766654422221  33  44333332222  222   2233356889999899999999999999999999


Q ss_pred             hhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       219 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      +.|-.++++|..++|....+-.+|..++.+++-.+
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999888887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.05  E-value=2.1e-05  Score=69.40  Aligned_cols=126  Identities=20%  Similarity=0.250  Sum_probs=87.8

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc----cCchHHHH-HHhHHHHHHHHHHHHhhhHH-----
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTRTFQ-LDAVPLAAGAFLCATAQSVQ-----  195 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~----~Grr~~~~-~~~~~~~~~~~~~~~~~~~~-----  195 (300)
                      +.+.+..+.|++..-.  +.+-...-+...+-+++.|..+||    ||||+.++ .+.++.++..++..++.++.     
T Consensus        54 y~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd  131 (498)
T KOG0637|consen   54 YLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD  131 (498)
T ss_pred             cccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence            4444556778876544  444444444556678999999995    78877665 45666666777776655432     


Q ss_pred             ------------HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchh-hHHHHHHHHHHHHHHHHHhhhhc
Q 022246          196 ------------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       196 ------------~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                                  .+++...+.=+..-.....+-++++|+.....+.+ +.+++.....+|+.+|-.++...
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence                        23333344445566778888999999998877777 99999999999999988887643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.04  E-value=8.8e-05  Score=65.12  Aligned_cols=159  Identities=17%  Similarity=0.086  Sum_probs=106.5

Q ss_pred             hHHHHHHHhCC---C--hhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH-HHhHHHHHHHHHHHHhhh--H-HH
Q 022246          126 ALEYLAKDLGI---A--ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCATAQS--V-QT  196 (300)
Q Consensus       126 ~~~~~~~~~~~---s--~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~-~~~~~~~~~~~~~~~~~~--~-~~  196 (300)
                      +.+|+.+..+.   +  ..++.+++..++..+..++-.|+.|.++|..|+||... ....+..++.++..+.++  + +.
T Consensus        38 fply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~  117 (438)
T COG2270          38 FPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLL  117 (438)
T ss_pred             hHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHH
Confidence            44455554433   2  23444588889999999999999999999999766554 455555566666666654  4 44


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhh--hhccC---------------CCCc
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LPLAG---------------NPLW  259 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~---------------~~~~  259 (300)
                      .+++..+..++.........+++.+..++++-++..++-.....+|+.+.-++.  ..+..               ....
T Consensus       118 ~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~  197 (438)
T COG2270         118 LLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED  197 (438)
T ss_pred             HHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc
Confidence            455667888888888888999999999988777777776666666665544432  11111               1244


Q ss_pred             hHHHHHHhHHHHHHHHH-HhhcCCCC
Q 022246          260 WRTMFGLAAIPSILLAL-GMGLSPES  284 (300)
Q Consensus       260 w~~~f~~~~~~~~~~~~-~~~~~pe~  284 (300)
                      -|..+.+.++..++..+ .++..++.
T Consensus       198 ~ri~~~l~A~W~li~~iPm~~~v~~~  223 (438)
T COG2270         198 VRITGLLAALWWLLFALPMILNVHDA  223 (438)
T ss_pred             chhHHHHHHHHHHHHHhHHHhccccc
Confidence            68888888888777666 44445543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.93  E-value=0.00017  Score=64.71  Aligned_cols=137  Identities=18%  Similarity=0.161  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCch---H----HHHHHhHHHHHHHHHHHHh----------hhHHHHHHHHHHHHH
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRT---R----TFQLDAVPLAAGAFLCATA----------QSVQTMIIGRVLAGI  206 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr---~----~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~G~  206 (300)
                      .|..++..+.-.+..++..++.-+.+++   +    =+.+++++++.+.++....          .+.++++...+++++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            4777877777778888888777775544   1    2345555555555444332          257888899999999


Q ss_pred             hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC-----CCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-----NPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      |+=+..|+..++++...|+...+..++.+......|..++..+++.-..     ........|+..++..++..+..+.
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888888888777763210     1244667788888777666554433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.91  E-value=0.0001  Score=66.80  Aligned_cols=124  Identities=15%  Similarity=0.100  Sum_probs=106.9

Q ss_pred             HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhh-hhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022246          128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG-SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI  206 (300)
Q Consensus       128 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g-~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  206 (300)
                      -++...++.+..+.  +...+...+...+++++.. .+.-.+|-|+++..|++.-.+..++.+++.+.|+++...++.++
T Consensus       266 ~yl~~~f~w~~~~~--s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~  343 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEF--SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL  343 (463)
T ss_pred             EEEeeecCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Confidence            45667789988888  8778888887888888766 78888999999999999999999999999999999888877776


Q ss_pred             hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      . +...+...+.++-+..++++|+++++......+..+++|.+-+.+.
T Consensus       344 ~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  344 A-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             h-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            5 4567888999999999999999999999999999988888877764

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.79  E-value=0.00042  Score=60.07  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc-----ccCchHHHHH-HhHHH
Q 022246          108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQL-DAVPL  181 (300)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd-----~~Grr~~~~~-~~~~~  181 (300)
                      ...+.+..++.-.+... .+|.+.+.-|.|.++.  +....++.=  ..-.++|.++.|     |+||||..++ +..+.
T Consensus        35 lLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll  109 (510)
T KOG3574|consen   35 LLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL  109 (510)
T ss_pred             HHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence            33445566666666666 8888888778877665  443333321  123578999999     9999987554 44445


Q ss_pred             HHHHHHHHHh-----------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 022246          182 AAGAFLCATA-----------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG  250 (300)
Q Consensus       182 ~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  250 (300)
                      +..+.+.+..           ++...+....++.-+..+.--...-.+...+..+++-|.+......+...|.+++..+.
T Consensus       110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            5555544432           23333434455666666655666667777888888888888777777777777665554


Q ss_pred             hhc
Q 022246          251 LPL  253 (300)
Q Consensus       251 ~~~  253 (300)
                      -.+
T Consensus       190 LaL  192 (510)
T KOG3574|consen  190 LAL  192 (510)
T ss_pred             eEe
Confidence            333

>PRK03612 spermidine synthase; Provisional

Probab=97.79  E-value=0.0047  Score=57.23  Aligned_cols=126  Identities=14%  Similarity=0.007  Sum_probs=73.6

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH-HhHHHHHHH-HHH----HHhhhH-HHHHH
Q 022246          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGA-FLC----ATAQSV-QTMII  199 (300)
Q Consensus       127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~-~~~~~~~~~-~~~----~~~~~~-~~l~~  199 (300)
                      .-.+.--+|.+..+.  +.+.+++++|.++|..+++++.++.-++...+- +..+.+... .+.    ++.... ..++.
T Consensus        38 ~r~l~~~~G~s~~~~--~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~  115 (521)
T PRK03612         38 GTLASYLLGDSVTQF--STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYV  115 (521)
T ss_pred             HHHHHHHhCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445567766666  899999999999999998888744333332211 111111111 111    111111 12233


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       200 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      ..++.++..|+..|....+..+... ++-+...|-.+....+|+++|.++.+++.-
T Consensus       116 ~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        116 LVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            4456778888888877766655332 223566777777788888888888777654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.61  E-value=0.00025  Score=62.74  Aligned_cols=151  Identities=14%  Similarity=-0.023  Sum_probs=92.7

Q ss_pred             HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc-hHHHHHHhHHHHHHHHHHHHh----hhHHHHHHHHHHHHH
Q 022246          132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCATA----QSVQTMIIGRVLAGI  206 (300)
Q Consensus       132 ~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~l~G~  206 (300)
                      ..-|++....  |++..+..++.+++..+.|.+.||... |.++.+......++.......    ...+.+++.-.+.|+
T Consensus       294 ~~sgY~~~~a--G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~  371 (480)
T KOG2563|consen  294 CPSGYEGVFA--GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF  371 (480)
T ss_pred             ccccCCcccc--chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence            3446665555  999999999999999999999999864 444444444444443222211    123445555577788


Q ss_pred             hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC--chHH-HHHHhHHHHHHHHHHhhcCCC
Q 022246          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL--WWRT-MFGLAAIPSILLALGMGLSPE  283 (300)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~w~~-~f~~~~~~~~~~~~~~~~~pe  283 (300)
                      +..+.+|+..-+-.|..-|..-++..|+.+...++-+++-.++-+.......  +|.+ .-+......++.+++..++++
T Consensus       372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence            8888889888888887766656777888776666655555555555554422  2322 333333334444444444444


Q ss_pred             C
Q 022246          284 S  284 (300)
Q Consensus       284 ~  284 (300)
                      .
T Consensus       452 ~  452 (480)
T KOG2563|consen  452 D  452 (480)
T ss_pred             h
Confidence            3

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.39  E-value=0.0029  Score=60.22  Aligned_cols=132  Identities=14%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHH-HHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHHHH---------
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCA---------  189 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i-~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~~~---------  189 (300)
                      ...+...++++.+|++..++  +++.+...+ +.+++.+++|+++||++  .|+++..++++..+..++..         
T Consensus       349 ~~~~lP~yl~~~~g~s~~~a--g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  426 (633)
T TIGR00805       349 YITFLPKYLENQYGISSAEA--NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCES  426 (633)
T ss_pred             HHHHHHHHHHHHcCCcHHHH--HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCC
Confidence            44456668888899998888  888877665 66889999999999998  44555555554444432211         


Q ss_pred             ---------------------H-------hh-------------------------------------------------
Q 022246          190 ---------------------T-------AQ-------------------------------------------------  192 (300)
Q Consensus       190 ---------------------~-------~~-------------------------------------------------  192 (300)
                                           -       ..                                                 
T Consensus       427 ~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~  506 (633)
T TIGR00805       427 APVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAK  506 (633)
T ss_pred             CccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCc
Confidence                                 0       00                                                 


Q ss_pred             ---------h-HHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHH-HHHHHHHHHhhhhccC
Q 022246          193 ---------S-VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAG  255 (300)
Q Consensus       193 ---------~-~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~  255 (300)
                               + +..++++.++..+..+........++....|+++|..++|+..... .+|.+=+|++.|.+.+
T Consensus       507 ~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD  580 (633)
T TIGR00805       507 KGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLID  580 (633)
T ss_pred             CCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhh
Confidence                     0 1223333444444444555566667778889999999999966554 5578889999998876

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.37  E-value=0.0029  Score=56.13  Aligned_cols=126  Identities=16%  Similarity=0.020  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccch
Q 022246          150 LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG  229 (300)
Q Consensus       150 ~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~  229 (300)
                      -.+-..+..+++.++.+|+.-+.=+....++.+++.++.+++++.+.-+++-++.+++.|........+.. .+++    
T Consensus        68 di~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----  142 (402)
T PF02487_consen   68 DILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----  142 (402)
T ss_pred             HHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----
Confidence            33445566677788888876555456667788889999999999998888889999998887777777644 5553    


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhhc
Q 022246          230 ALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       230 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~  280 (300)
                      ...+-+..+...++++|+..-..+.....+-|..+.+..++.++.++.+++
T Consensus       143 ~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~  193 (402)
T PF02487_consen  143 SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFF  193 (402)
T ss_pred             cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777777777665555443355688888887777666655444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.0061  Score=55.04  Aligned_cols=106  Identities=14%  Similarity=0.012  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcc
Q 022246          147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE  226 (300)
Q Consensus       147 ~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  226 (300)
                      .++....+.+++++.+.+.|+.|.|+.++++..++....+..-+ +|-+.+++.-++.|+|.+..+..-..+++|...++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            66677778899999999999999999999999998887776655 45667788899999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          227 IRGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       227 ~r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      .+.+..++.......+.++|.++...+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            888888888877777777776555444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.32  E-value=0.0007  Score=60.20  Aligned_cols=132  Identities=22%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             HHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCc-------hHHHHH----HhHHHHHHHHHHHH-hhhHH
Q 022246          128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-------TRTFQL----DAVPLAAGAFLCAT-AQSVQ  195 (300)
Q Consensus       128 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Gr-------r~~~~~----~~~~~~~~~~~~~~-~~~~~  195 (300)
                      ++..+-.|.+.++.  -+...+...+..+|.+++|.++||+-|       .++=.+    +..+.+.+.++... ..+..
T Consensus       272 ~~~~~~~~~~~~~~--~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~  349 (493)
T KOG1330|consen  272 YYSYELIGFDHNAT--LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSM  349 (493)
T ss_pred             HHHHHHhCCccccc--hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHH
Confidence            33334445555555  477788888899999999999999422       221111    22222222222222 22223


Q ss_pred             HHHHHHHHHHHhhh-hhhhhhhhhhhccCCcccchhhHHHHHHHH-HHHHHHHHHhhhhccCCCCchH
Q 022246          196 TMIIGRVLAGIGIG-ISSAIVPLYISEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAGNPLWWR  261 (300)
Q Consensus       196 ~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~w~  261 (300)
                      .+....++.|+... ...+....+..|..|+++|..+.++-.... .+|-+-+|.+.|.+.+...+|+
T Consensus       350 ~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  350 IFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            33334455554433 345566678889999999999999955554 4466667767778777655666

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.29  E-value=0.057  Score=48.78  Aligned_cols=162  Identities=13%  Similarity=0.022  Sum_probs=102.4

Q ss_pred             hHHHHHHHhCCChhhh-HHHHHHHHHHH-HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh------------
Q 022246          126 ALEYLAKDLGIAENTV-LQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA------------  191 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~-~~~~~~~~~~i-~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~------------  191 (300)
                      .+-.+.+.+.++.... ...++-+...+ +..+..++.+++.+++.|.+++-.-+..+..+.+++++.            
T Consensus        45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~  124 (509)
T COG3202          45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP  124 (509)
T ss_pred             HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence            5566777776652221 11455555555 567778889999999999999877666666666655531            


Q ss_pred             ---h--------h---------HHHHHHHHHHHHHhhhhhhh-hhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 022246          192 ---Q--------S---------VQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG  250 (300)
Q Consensus       192 ---~--------~---------~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  250 (300)
                         .        +         .|..-+...+.-+-.....+ .-+....|.+..++-.+..+.++.+.+++..++..+.
T Consensus       125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~  204 (509)
T COG3202         125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT  204 (509)
T ss_pred             HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence               1        1         13333333333343344444 5567888999999999999999999999998888887


Q ss_pred             hhccCCCCc---------hHHHHHHhHHHHHHHHHHhhc----CCCChhH
Q 022246          251 LPLAGNPLW---------WRTMFGLAAIPSILLALGMGL----SPESPRW  287 (300)
Q Consensus       251 ~~~~~~~~~---------w~~~f~~~~~~~~~~~~~~~~----~pe~~~~  287 (300)
                      .++......         .+..+.+.++.++++.++..+    +.++|..
T Consensus       205 ~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f  254 (509)
T COG3202         205 SWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLF  254 (509)
T ss_pred             HHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence            777543222         445555555555555555444    3445543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.021  Score=51.62  Aligned_cols=107  Identities=18%  Similarity=0.152  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcc---ccCchHHHHHHhHHHHHHHHHHHHh------------------hhHHHHHHHHH
Q 022246          144 GWIVSSLLAGATVGSFTGGSLAD---KFGRTRTFQLDAVPLAAGAFLCATA------------------QSVQTMIIGRV  202 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd---~~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~  202 (300)
                      +.......+|..++..+.+.+++   ++||++.+.++..+..+..++.-..                  +++...++.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            34444445555666666777775   5799999998888877777765432                  24566778889


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhh
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL  251 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  251 (300)
                      +.|++-+......+.++.+.+ ++.|..+.+++-.-..++..++-....
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999 577889999988887777766544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.11  E-value=0.0022  Score=58.10  Aligned_cols=151  Identities=11%  Similarity=0.016  Sum_probs=97.9

Q ss_pred             CChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH----------hhhHHHHHHHHHHHH
Q 022246          136 IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT----------AQSVQTMIIGRVLAG  205 (300)
Q Consensus       136 ~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~l~G  205 (300)
                      +++.-.  +.+..+..++..+|..++..+.-+..-|+++....++.++..+.-..          .++.+..+.--++..
T Consensus       252 fs~~f~--~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~  329 (433)
T PF03092_consen  252 FSPSFY--GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE  329 (433)
T ss_pred             cCHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence            665555  67777777777888888877766777788887777766655443211          112222223335555


Q ss_pred             HhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-------CCchHHHHHHhHHHHHHHHHHh
Q 022246          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-------PLWWRTMFGLAAIPSILLALGM  278 (300)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~w~~~f~~~~~~~~~~~~~~  278 (300)
                      +.....+-+...+++++.|+..-|+..++..+..++|..++..++..+.+.       ..+-.+..++..++.++.+.+.
T Consensus       330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll  409 (433)
T PF03092_consen  330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL  409 (433)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            555566667777899999999999999999999999888888887776532       1122344455555555555556


Q ss_pred             hcCCCChhHH
Q 022246          279 GLSPESPRWL  288 (300)
Q Consensus       279 ~~~pe~~~~~  288 (300)
                      .++|+..+..
T Consensus       410 ~lLp~~~~~~  419 (433)
T PF03092_consen  410 FLLPPQKRIT  419 (433)
T ss_pred             HHcCCCchhh
Confidence            6677755433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.02  E-value=0.00046  Score=57.16  Aligned_cols=96  Identities=22%  Similarity=0.329  Sum_probs=65.4

Q ss_pred             hhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (300)
Q Consensus       125 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (300)
                      +..-++-..+|....++  +.+.....-..+++..+.|-|+||-|||+..+.-.+.+.+.++ .-.++.+-.+++.|++.
T Consensus        58 PYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LG  134 (454)
T KOG4332|consen   58 PYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLG  134 (454)
T ss_pred             ceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhh
Confidence            34445666778877777  5554444444566778889999999999975544333333222 22467888999999999


Q ss_pred             HHhhhhhhhhhhhh-hhccC
Q 022246          205 GIGIGISSAIVPLY-ISEIS  223 (300)
Q Consensus       205 G~~~~~~~~~~~~~-~~~~~  223 (300)
                      |+..+..++..-++ +.|.-
T Consensus       135 GiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  135 GIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hHHHHHHHHHHHHHHHHHhh
Confidence            99998888777664 44543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.89  E-value=0.02  Score=51.92  Aligned_cols=108  Identities=15%  Similarity=0.060  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCch--HHHHHH--hHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHhhhh
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLD--AVPLAAGAFLCATA---------QSVQTMIIGRVLAGIGIGI  210 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr--~~~~~~--~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~~~~~  210 (300)
                      -....+++++-.+|..+..+.. .-++|  ++++.+  =+++....++|..-         ++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4567778888888877554431 11222  333322  22333333444322         3556677778999999999


Q ss_pred             hhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhh
Q 022246          211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP  252 (300)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  252 (300)
                      ..+..+.+..+..++++|..+..++..+..+|..+|..++..
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888888888888776543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.89  E-value=0.031  Score=50.41  Aligned_cols=126  Identities=18%  Similarity=0.151  Sum_probs=87.5

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHH------hh----hHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT------AQ----SVQ  195 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~------~~----~~~  195 (300)
                      ....+...-|+++...  |..-++..+....+.+++.++.+|+|..+.=..+...-.++..++..      .+    +..
T Consensus       280 lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~  357 (432)
T PF06963_consen  280 LMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY  357 (432)
T ss_pred             HHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence            3343444449998888  88899999999999999999999999888766665544333332221      12    233


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      .++.+-.+.=+|.=++--...-++.|..|+++||...|.-.....+--++-..++-.+
T Consensus       358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3333334444555555666677889999999999999998888888777766665443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.50  E-value=0.34  Score=44.61  Aligned_cols=103  Identities=15%  Similarity=0.066  Sum_probs=71.1

Q ss_pred             HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh---------h----------------------hHHHHHHHH
Q 022246          153 GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---------Q----------------------SVQTMIIGR  201 (300)
Q Consensus       153 ~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~---------~----------------------~~~~l~~~~  201 (300)
                      +..+...+..+++++++|.+++-+....+.....+.++.         +                      +.|...+..
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            345556779999999999998876665555554444431         0                      122233333


Q ss_pred             HHHHHhhhhhhh-hhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          202 VLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       202 ~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      ++.-+......+ .-+.+..|.++.++-.+..+++..+.++|.+++..+...+..
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444344444 468899999999999999999999999999988887777655

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.44  E-value=0.0031  Score=57.09  Aligned_cols=74  Identities=14%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      ++.|++.-.......++-++...++.++++.+++.....++.+++|++...+... .|.|+...+.+...++...
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~-~g~~~v~~~~~~~~l~~~~  469 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL-SGPRPVWIILLCLLLVVAA  469 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh-cCccHHHHHHHHHHHHHHH
Confidence            4555555555666778889999999999999999999999999999988777654 6677766666555544433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.43  E-value=0.0015  Score=59.23  Aligned_cols=73  Identities=25%  Similarity=0.332  Sum_probs=57.5

Q ss_pred             HHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHH-HhHHHHHHHHHHHH
Q 022246          116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGAFLCAT  190 (300)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~-~~~~~~~~~~~~~~  190 (300)
                      .+...+.+.+.++.+.+++|+++.+.  |.++..--+..+++.|++|+++|||-+|+.+++ ++++...+.++..+
T Consensus        23 ~~~~~g~l~pll~vy~kQLGl~p~~~--Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f   96 (618)
T KOG3762|consen   23 FGARFGSLFPLLAVYFKQLGLNPAVV--GTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF   96 (618)
T ss_pred             eeecccccchHHHHHHHHcCCCHHHh--hhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence            34445566778889999999999999  999999999999999999999999987665554 55555555555544

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.23  E-value=0.0085  Score=51.59  Aligned_cols=161  Identities=17%  Similarity=0.084  Sum_probs=107.7

Q ss_pred             hHHHHH-HHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022246          126 ALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (300)
Q Consensus       126 ~~~~~~-~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  204 (300)
                      ..|++. .+.|+++.+.. .-+.-+..-.+.+.-++.=.+.|-.--|++++.-.+...+..++.-+.++.+.+=++-++.
T Consensus        27 ~tpyl~gp~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy  105 (433)
T KOG3810|consen   27 LTPYLLGPDKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY  105 (433)
T ss_pred             cchhccCCCCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence            444544 34566655431 1111122222344445555789999899998887777777777777888888888888888


Q ss_pred             HHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-CCchHHHHHHhHHHHHHHHHHhhcCCC
Q 022246          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGMGLSPE  283 (300)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~w~~~f~~~~~~~~~~~~~~~~~pe  283 (300)
                      |...+. ....++++-+..+++++.++.++.-.....|...|..++-.+... ..++...=.+......+..++.+++|.
T Consensus       106 G~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~  184 (433)
T KOG3810|consen  106 GPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR  184 (433)
T ss_pred             ChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence            887654 567888888999999999999998888777877777777766542 234454445554444555667778877


Q ss_pred             ChhHH
Q 022246          284 SPRWL  288 (300)
Q Consensus       284 ~~~~~  288 (300)
                      .++..
T Consensus       185 v~rSl  189 (433)
T KOG3810|consen  185 VKRSL  189 (433)
T ss_pred             Cchhh
Confidence            66443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.18  E-value=0.0013  Score=61.16  Aligned_cols=133  Identities=16%  Similarity=0.176  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHH-HHHHHHhhhhhhccccC--chHHHHHHhHHHHHHHHH------HH---
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFL------CA---  189 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i-~~~i~~~~~g~lsd~~G--rr~~~~~~~~~~~~~~~~------~~---  189 (300)
                      .....+.|++.+|+++...+  +.+..+..+ +.++|.+++|++..|+.  .|.++....+...+..+.      ..   
T Consensus       324 ~~tF~pKylE~QF~~sas~A--~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~  401 (539)
T PF03137_consen  324 FATFLPKYLESQFGLSASQA--SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPN  401 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhCCCHHHH--HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCC
Confidence            33445669999999998887  666655554 66788999999999884  333333322222222211      00   


Q ss_pred             ---------H------------------------------------hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCC
Q 022246          190 ---------T------------------------------------AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP  224 (300)
Q Consensus       190 ---------~------------------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  224 (300)
                               .                                    ...+..+++..++.-+..+........++....+
T Consensus       402 ~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~  481 (539)
T PF03137_consen  402 PPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVP  481 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCC
Confidence                     0                                    0012223444444445555556666667778889


Q ss_pred             cccchhhHHHHHHH-HHHHHHHHHHhhhhccCC
Q 022246          225 TEIRGALGSVNQLF-ICVGILAALVAGLPLAGN  256 (300)
Q Consensus       225 ~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~  256 (300)
                      +++|+.++|+.... ..+|.+=+|++.|.+.+.
T Consensus       482 ~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  482 PEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ---------------------------------
T ss_pred             hhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            99999999996554 455788899999988764

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.95  E-value=0.74  Score=40.96  Aligned_cols=163  Identities=12%  Similarity=-0.006  Sum_probs=79.2

Q ss_pred             HHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHH----HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh--
Q 022246          118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLA----GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--  191 (300)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i----~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~--  191 (300)
                      ..++.+....+|+.+++-....+   ......+.+    ...+....-..+.-|. |+++.....+...+..+.+.++  
T Consensus        32 lpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~~~v  107 (406)
T KOG1479|consen   32 LPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDLALV  107 (406)
T ss_pred             cchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34556666778888777544432   233444433    3344444445555552 2222111111111222222221  


Q ss_pred             -------hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHH
Q 022246          192 -------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (300)
Q Consensus       192 -------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f  264 (300)
                             ..+...++.-++.+++.+......+...+++-++-.++...|- +.++.+-.++--+......+...+=...|
T Consensus       108 ~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~-a~aG~l~Sl~~i~tka~~~~~~~sA~~yF  186 (406)
T KOG1479|consen  108 KTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQ-ALAGTLTSLLRILTKAAFSDSRTSALIYF  186 (406)
T ss_pred             ccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcc-hhHhHHHHHHHHHHHHhcCCCCceeehhH
Confidence                   2345556666778888887777777777765443333332222 22222222222222222222234445667


Q ss_pred             HHhHHHHHHHHHHhhcCCCCh
Q 022246          265 GLAAIPSILLALGMGLSPESP  285 (300)
Q Consensus       265 ~~~~~~~~~~~~~~~~~pe~~  285 (300)
                      .+..++.+++++++..+|+.|
T Consensus       187 ~~s~~~~llC~i~y~~l~~lp  207 (406)
T KOG1479|consen  187 ITSTVILLLCFVLYLVLPKLP  207 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhcch
Confidence            777777777777777667665

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.90  E-value=0.042  Score=49.81  Aligned_cols=142  Identities=11%  Similarity=0.065  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHH--hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcc-----ccCchHHHHH-HhHH
Q 022246          109 ACLGAILFGYHLGVVNGALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQL-DAVP  180 (300)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd-----~~Grr~~~~~-~~~~  180 (300)
                      +.+.+++++.-.+......|.+.++  -+.+.++.  +...-+ ..-+ -.-++|.++.|     |+||||..++ .-.+
T Consensus         5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~fSla-~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l   80 (544)
T PF13000_consen    5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AIFSLA-SYPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYL   80 (544)
T ss_pred             HHHHHHHcCcccccccccchhhhccccCCCChhHh--eeeeee-echh-HHHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence            3445666666566554577877777  56666654  222111 1111 12455666665     8999997665 2333


Q ss_pred             HHHHHHHHHHhh------------------------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHH
Q 022246          181 LAAGAFLCATAQ------------------------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ  236 (300)
Q Consensus       181 ~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  236 (300)
                      .++.++..+...                        +...+....++.-+..+----+.-.+.-.+..++.++.|.....
T Consensus        81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt  160 (544)
T PF13000_consen   81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT  160 (544)
T ss_pred             HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence            333333333211                        01112222223333333333344456666777888888888888


Q ss_pred             HHHHHHHHHHHHhhhhcc
Q 022246          237 LFICVGILAALVAGLPLA  254 (300)
Q Consensus       237 ~~~~~g~~~~~~~~~~~~  254 (300)
                      .+..+|.+++-.+.-.+.
T Consensus       161 vG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  161 VGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             hHhhhhHHHHHHHHHhhC
Confidence            888888877766554443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.76  E-value=0.21  Score=44.66  Aligned_cols=108  Identities=11%  Similarity=0.085  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHH--HHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTF--QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (300)
                      |.+-++..+.++++.+..|++..++.+-.-+  ....++.+...++++...|.+...++.++.+.......++...-++.
T Consensus       288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~  367 (412)
T PF01770_consen  288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK  367 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888889999999996666664433  34445556667778888999998888888777777777777777777


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          222 ISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      ....+.-|..+|+....   +.++-.++...+.
T Consensus       368 ~l~~e~yaLVFGiNtf~---Al~LQtilT~iV~  397 (412)
T PF01770_consen  368 NLSEERYALVFGINTFV---ALVLQTILTLIVV  397 (412)
T ss_pred             hccccceeeeeeeHHHH---HHHHHHheEEEEE
Confidence            77656558888876543   3344444444443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.29  E-value=0.24  Score=47.31  Aligned_cols=59  Identities=8%  Similarity=0.036  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHH-HHHHHHHHHhhhhccC
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAG  255 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~~~  255 (300)
                      +++..++.-+..+......+.++....++++|..++|+..+.. .+|.+=+|++-|++.+
T Consensus       589 Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  589 FLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             HHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence            3444444445445555677778888999999999999965554 5577888999999876

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.28  E-value=0.15  Score=43.77  Aligned_cols=69  Identities=17%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             HHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246          154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (300)
Q Consensus       154 ~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  223 (300)
                      .+...++.+.+..++|-|+.++++...+..... .-+-+.+..++..-.+.|++.+..+..-.+|++++-
T Consensus        71 l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   71 LIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            345556666889999999999887776654332 223356778888888999998888777766666554

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.21  E-value=1.1  Score=40.87  Aligned_cols=88  Identities=13%  Similarity=0.051  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHh----hhhccCC---CCchHHHHH
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA----GLPLAGN---PLWWRTMFG  265 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~----~~~~~~~---~~~w~~~f~  265 (300)
                      .++..++.-++.|++.+.......++.+ .+|++.    ++.+..|..++++++.++    .....+.   ..+=...|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            4555666678888888888877777777 456443    333333333333333322    2112121   112234555


Q ss_pred             HhHHHHHHHHHHhhcCCCCh
Q 022246          266 LAAIPSILLALGMGLSPESP  285 (300)
Q Consensus       266 ~~~~~~~~~~~~~~~~pe~~  285 (300)
                      +..++.+++++.+..+++.|
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~  199 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLP  199 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCH
Confidence            55555566666665666554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.79  E-value=3.1  Score=37.77  Aligned_cols=163  Identities=10%  Similarity=-0.145  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhC-CChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHH
Q 022246          110 CLGAILFGYHLGVVNGALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC  188 (300)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~  188 (300)
                      +...++...+.-+.....+.+..+.. -+--..  +...-+-.+..+++.+..|.+.||..|.+++..+.++--+...+.
T Consensus         8 y~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~--siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s   85 (432)
T PF06963_consen    8 YLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPV--SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS   85 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence            33444444444455555555444442 121111  222333334456677888999999999998766654433332221


Q ss_pred             H------Hh--h----hHHHH---HHHHHHHHHhhhhhhhhhh--hhhhccC------CcccchhhHHHHHHHHHHHHHH
Q 022246          189 A------TA--Q----SVQTM---IIGRVLAGIGIGISSAIVP--LYISEIS------PTEIRGALGSVNQLFICVGILA  245 (300)
Q Consensus       189 ~------~~--~----~~~~l---~~~~~l~G~~~~~~~~~~~--~~~~~~~------~~~~r~~~~~~~~~~~~~g~~~  245 (300)
                      +      +.  .    +.+..   ++.-.+.|...- ......  ++=-||.      ++..+....+.+--.=.+--++
T Consensus        86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll  164 (432)
T PF06963_consen   86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER-LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL  164 (432)
T ss_pred             HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH-HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence            1      11  1    11222   221222221111 111111  1112332      2233344444444444556789


Q ss_pred             HHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          246 ALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       246 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      +|++.|.+... .+.+...++.++..++..+
T Consensus       165 aPl~vG~l~t~-~s~~~~~~~i~~~N~~S~~  194 (432)
T PF06963_consen  165 APLFVGLLMTF-ASPVIAAIFIAGWNLASVF  194 (432)
T ss_pred             HHHHHHHHhhc-cCHHHHHHHHHHHHHHHHH
Confidence            99999999775 7788877777777766544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.55  E-value=0.43  Score=39.70  Aligned_cols=101  Identities=16%  Similarity=0.047  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccc-cCchHHHH----HHhHHHHHHHHHHHH-h----hhHHHHHHHHHHHHHhhhhhhhh
Q 022246          145 WIVSSLLAGATVGSFTGGSLADK-FGRTRTFQ----LDAVPLAAGAFLCAT-A----QSVQTMIIGRVLAGIGIGISSAI  214 (300)
Q Consensus       145 ~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~l~~~~~l~G~~~~~~~~~  214 (300)
                      ...-++..|..+|.+..|++... +.||+.+.    .+.+++.+..+..+. .    .+...++++-|+.|++.=+..++
T Consensus       145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V  224 (267)
T PF07672_consen  145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV  224 (267)
T ss_pred             HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            44555666777777888888774 45555443    233333333333211 1    13556777778888776555665


Q ss_pred             hhhhhhccC--CcccchhhHHHHHHHHHHHHHH
Q 022246          215 VPLYISEIS--PTEIRGALGSVNQLFICVGILA  245 (300)
Q Consensus       215 ~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~  245 (300)
                      ...+.-|.=  .|++-|..+|+.-+.+.+...+
T Consensus       225 iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi  257 (267)
T PF07672_consen  225 ILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTI  257 (267)
T ss_pred             HhcChhhhcCCCcceehhHHHHHHHHHHHHHHH
Confidence            555544432  2333455555544443333333

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.42  E-value=0.012  Score=50.76  Aligned_cols=107  Identities=21%  Similarity=0.214  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhccc-cCchHHHHHH--hHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHhhhhhh
Q 022246          146 IVSSLLAGATVGSFTGGSLADK-FGRTRTFQLD--AVPLAAGAFLCA----------TAQSVQTMIIGRVLAGIGIGISS  212 (300)
Q Consensus       146 ~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~--~~~~~~~~~~~~----------~~~~~~~l~~~~~l~G~~~~~~~  212 (300)
                      ...+++++-.+|..+.++.-=+ -.+|++++.+  =+++....++|.          ..++-+..++..++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4557788888888877654211 1345544332  122222223331          12345667778899999999999


Q ss_pred             hhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhh
Q 022246          213 AIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP  252 (300)
Q Consensus       213 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  252 (300)
                      +..+.+..+..++++|..+-.+......+|..+|..++..
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             HHHH------------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888888888887777766543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.33  E-value=0.13  Score=45.63  Aligned_cols=108  Identities=17%  Similarity=0.123  Sum_probs=73.5

Q ss_pred             HHHHHH-HHHHHHHHHhhhhhhccccCchHHHHHH-hHHHHHHHHH-HH------HhhhHHHHHHHHHHHHHhhhhhhhh
Q 022246          144 GWIVSS-LLAGATVGSFTGGSLADKFGRTRTFQLD-AVPLAAGAFL-CA------TAQSVQTMIIGRVLAGIGIGISSAI  214 (300)
Q Consensus       144 ~~~~~~-~~i~~~i~~~~~g~lsd~~Grr~~~~~~-~~~~~~~~~~-~~------~~~~~~~l~~~~~l~G~~~~~~~~~  214 (300)
                      -....+ +++.-.+|.+...++-++- ||+..+.. +=+..+-.+. |-      .-.+-+++++...+.|+..|=..+.
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            345555 8888888877777776664 34433322 2222222222 21      1346677888889999999988888


Q ss_pred             hhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhh
Q 022246          215 VPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP  252 (300)
Q Consensus       215 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  252 (300)
                      .+.+.....+++++-.+-.+.......|.+.|..++..
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            88899999999999888888888777777777666543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=93.52  E-value=1.9  Score=39.50  Aligned_cols=58  Identities=19%  Similarity=0.096  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      ++.-++..+.....+....++=+.+..|..-|+.|.+.+...++|+..+..+.-.+.+
T Consensus       409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence            3444677777777888888899999999999999999999999998877766555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=93.49  E-value=2  Score=39.37  Aligned_cols=107  Identities=12%  Similarity=0.092  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCc--hHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGR--TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr--r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (300)
                      |.+-++..+..+++.+..|++-.+..+  ..++.+..++.+...++++..+|.|..+++.++.+.......++...-++.
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777777788889999998776644  234445556666667788889999999999999998888888888888888


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          222 ISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      ....+.-|..+|+....   +.++-.++.-.+
T Consensus       381 ~L~~~~~aLvFGiNtfv---Al~LQtilT~iV  409 (511)
T TIGR00806       381 SLSKELCALVFGINTFV---ATALKTIITAVV  409 (511)
T ss_pred             HhcccceEEEEecHHHH---HHHHHHheEEEE
Confidence            87766668999887654   334444444343

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=93.29  E-value=0.12  Score=44.11  Aligned_cols=105  Identities=15%  Similarity=0.071  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCc-hHHH-----HHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGR-TRTF-----QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPL  217 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Gr-r~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  217 (300)
                      -|....|.+|..+     .+=+-++=+ +...     ..-.+++.+...+..+.++++..++.-++-|+..|+.+....-
T Consensus       291 RwyqvlYQlGVFi-----SRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~  365 (409)
T KOG3880|consen  291 RWYQVLYQLGVFI-----SRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH  365 (409)
T ss_pred             hhhheeeeeeEEE-----EeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence            6888888765332     222222212 2211     1223344445556778899999999999999988988888888


Q ss_pred             hhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhc
Q 022246          218 YISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (300)
Q Consensus       218 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  253 (300)
                      -+.+-.++++|-.+++...++-.+|..++.+++-.+
T Consensus       366 ~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  366 NIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            888888889999999999999999988887776554

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=92.53  E-value=4.8  Score=32.49  Aligned_cols=40  Identities=15%  Similarity=0.128  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHhhhhhh---ccccCchHHHHHHhHHHHHHH
Q 022246          146 IVSSLLAGATVGSFTGGSL---ADKFGRTRTFQLDAVPLAAGA  185 (300)
Q Consensus       146 ~~~~~~i~~~i~~~~~g~l---sd~~Grr~~~~~~~~~~~~~~  185 (300)
                      ......+++.+|..+++.+   ..+..+|+.....+.+-++..
T Consensus        51 ~~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll   93 (209)
T PF06912_consen   51 RYLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILL   93 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            3444555666777777777   233444444444444433333

The function of this family is unknown although a few members are thought to be membrane proteins.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.96  E-value=0.1  Score=46.74  Aligned_cols=128  Identities=12%  Similarity=-0.102  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc-
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI-  222 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~-  222 (300)
                      .|-..++.+...+..+..-++.+|+|-|+.+..+...+.++..+.+..++.......+-..|+-.+....+-+..++.. 
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            4566777778888899999999999977777777776777777777777777777777666644443333333322221 


Q ss_pred             --------------------CCccc--chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246          223 --------------------SPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (300)
Q Consensus       223 --------------------~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~  271 (300)
                                          .....  +|...|+.++...+..++..+..|.+.+...+=+..-.+.+..+
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s  485 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVA  485 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHH
Confidence                                11112  25666667777777776666555555543233333333333333

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=91.61  E-value=4.6  Score=35.42  Aligned_cols=131  Identities=15%  Similarity=0.150  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCch--HHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~  221 (300)
                      |..-++..+..+++.+..|.+--++.|.  ..+.++.+.-+...++++...+.|..++..++.+.......++....++.
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            5556667777888899999998777665  34556666677777788888898888888877777777777777777887


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-CC---------chHHHHHHhHHHHHHHHHH
Q 022246          222 ISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-PL---------WWRTMFGLAAIPSILLALG  277 (300)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~---------~w~~~f~~~~~~~~~~~~~  277 (300)
                      ....+.-|..+|+....   +-++-.++.-...+. ..         -+...|.+.+++.++....
T Consensus       354 nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~  416 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTFV---ALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGI  416 (433)
T ss_pred             hhhhhhheeeeehHHHH---HHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHH
Confidence            77766668888887654   444555555554442 11         1344667777766665443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=89.26  E-value=6.5  Score=28.29  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHH
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA  183 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~  183 (300)
                      +.......++..+++.+.+.+.|..|.+..+.+...+..+
T Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (141)
T TIGR00880        90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA  129 (141)
T ss_pred             HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence            5666777788888888888888888877765554444333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=87.26  E-value=24  Score=32.51  Aligned_cols=72  Identities=13%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             HHHHHHhhhhhhhhhhhhhhccCCc-ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHH
Q 022246          201 RVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (300)
Q Consensus       201 ~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~  273 (300)
                      -++.|+.....+...-..+.+.+|. ++|...+|-+....++..++..++++.+... .||.....+.-++.++
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~-~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRK-YGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence            3556666666676677788888875 4578888887777666665555555666666 8998776666555544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=86.83  E-value=19  Score=30.83  Aligned_cols=77  Identities=22%  Similarity=0.203  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc---cCchHHHHHHhH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK---FGRTRTFQLDAV  179 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~---~Grr~~~~~~~~  179 (300)
                      ....+.+.+.+++.-+..+..+..+..+.+..++..+..  ++..+...      ..+..+-.++   ||.||.=+++.+
T Consensus        24 l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~--al~lal~A------~~~a~r~~~~~~TfGy~R~eiLaa~   95 (296)
T COG1230          24 LLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDAL--ALLLALIA------IKLARRPATKRFTFGYKRLEILAAF   95 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHH--HHHHHHHH------HHHhcCCCCCCCCccHhHHHHHHHH
Confidence            334444444444444445555667777888888765555  44443332      2333344443   787776555555


Q ss_pred             HHHHHHHH
Q 022246          180 PLAAGAFL  187 (300)
Q Consensus       180 ~~~~~~~~  187 (300)
                      +-++..+.
T Consensus        96 ~nav~Li~  103 (296)
T COG1230          96 LNALLLIV  103 (296)
T ss_pred             HHHHHHHH
Confidence            54444443

>PRK10263 DNA translocase FtsK; Provisional

Probab=86.51  E-value=4.6  Score=41.36  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=9.6

Q ss_pred             HHHHHHHHHhhhhhhccccC
Q 022246          150 LLAGATVGSFTGGSLADKFG  169 (300)
Q Consensus       150 ~~i~~~i~~~~~g~lsd~~G  169 (300)
                      -+.++.+|..+...|..-||
T Consensus        61 ~Nl~GiVGA~LAD~L~~LFG   80 (1355)
T PRK10263         61 HNLGGMPGAWLADTLFFIFG   80 (1355)
T ss_pred             ccccchHHHHHHHHHHHHHh
Confidence            34444455555544444555

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=85.55  E-value=0.65  Score=39.76  Aligned_cols=124  Identities=17%  Similarity=0.050  Sum_probs=73.8

Q ss_pred             HHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhH
Q 022246          153 GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALG  232 (300)
Q Consensus       153 ~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~  232 (300)
                      -..+-.+.+..+.||+---+=+.+..++.+.+.++.+++++.++-+.+-.+..++.|.......++ +..+++    ...
T Consensus        74 PsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss~Y~~----~~i  148 (409)
T KOG3880|consen   74 PSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SSRYPS----IVI  148 (409)
T ss_pred             HHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hccCCC----cee
Confidence            344455666677777543333445556677788888999999988888888888776544333333 333333    223


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccC-CCCchHHHHHHhHHHHHHHHHHhhcC
Q 022246          233 SVNQLFICVGILAALVAGLPLAG-NPLWWRTMFGLAAIPSILLALGMGLS  281 (300)
Q Consensus       233 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~w~~~f~~~~~~~~~~~~~~~~~  281 (300)
                      +.+..+...++++|..--..+.+ ...+-|....+...+.++.++.++++
T Consensus       149 ~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l  198 (409)
T KOG3880|consen  149 AGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL  198 (409)
T ss_pred             ccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence            33333333344444444334433 23677888888888777766655553

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.02  E-value=19  Score=30.61  Aligned_cols=134  Identities=17%  Similarity=0.184  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccCch--HHHHHHhHHHHHHHHHHHH----hh---hHHHHHHHHHHHHHhhhhhh
Q 022246          142 LQGWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCAT----AQ---SVQTMIIGRVLAGIGIGISS  212 (300)
Q Consensus       142 ~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr--~~~~~~~~~~~~~~~~~~~----~~---~~~~l~~~~~l~G~~~~~~~  212 (300)
                      -.|.+.+.++++..+|.-+..++..|-..|  ..+.+.++..++...+...    ++   +...-++...+.-.+.|..+
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            347888899999988888887777654433  3344444433333322221    11   12222444555556677889


Q ss_pred             hhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHH
Q 022246          213 AIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (300)
Q Consensus       213 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~  276 (300)
                      |..+-+=....|.+.|++.+.++-.-..+-..++-...- ......+-|..|-++....++..+
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh-~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLH-VDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecc-cccCccccchhhhhhHHHHHHHHH
Confidence            999999999999999998888876554443333221110 111124567788877776655544

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=84.44  E-value=21  Score=33.75  Aligned_cols=88  Identities=19%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC---CchH--------
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---LWWR--------  261 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~w~--------  261 (300)
                      +..+++--.++.|++.........-+.-+-+|++.|+.+.+++.....+|..+...+........   .+|-        
T Consensus       457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~  536 (571)
T KOG1237|consen  457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKG  536 (571)
T ss_pred             eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhh
Confidence            56778888899999999999988899999999999999999999999999998888875543321   1342        


Q ss_pred             ---HHHHHhHHHHHHHHHHhhc
Q 022246          262 ---TMFGLAAIPSILLALGMGL  280 (300)
Q Consensus       262 ---~~f~~~~~~~~~~~~~~~~  280 (300)
                         ..||+.+....+-.+..++
T Consensus       537 ~ld~Fy~lla~~~~~n~~~~~~  558 (571)
T KOG1237|consen  537 RLDYFYWLLAVYSAVNFLYFLI  558 (571)
T ss_pred             HHHHHHHHHHHHHhhhhhheEE
Confidence               3456666655554444333

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=83.82  E-value=30  Score=30.55  Aligned_cols=78  Identities=19%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHH----HhHH---HHHHHHHHHH--hhhHHHHHHHHHHHHHhhhhhhhh
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL----DAVP---LAAGAFLCAT--AQSVQTMIIGRVLAGIGIGISSAI  214 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~----~~~~---~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~  214 (300)
                      +.+.+.|.....+|+...-++.|.--.-+.+..    |++.   ..+..+.+++  .++.+.++++-+++|.-.|+-.|.
T Consensus        46 S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL  125 (508)
T COG4262          46 SLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPL  125 (508)
T ss_pred             HHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHH
Confidence            678888888888888887777664322211111    1111   1111112222  246677888889999999988888


Q ss_pred             hhhhhhc
Q 022246          215 VPLYISE  221 (300)
Q Consensus       215 ~~~~~~~  221 (300)
                      .+.++..
T Consensus       126 ~mrml~~  132 (508)
T COG4262         126 LMRMLQR  132 (508)
T ss_pred             HHHHHHH
Confidence            8877655

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=83.10  E-value=5.7  Score=30.24  Aligned_cols=51  Identities=18%  Similarity=0.154  Sum_probs=34.8

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 022246          192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILA  245 (300)
Q Consensus       192 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  245 (300)
                      +++..+++..++.|+|.   ..+.|.+++-.+.+++-|..+|+-.+-.+++-+.
T Consensus        95 P~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~  145 (153)
T PF11947_consen   95 PPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWEEFKRNWGRMW  145 (153)
T ss_pred             CchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence            45555555555555543   3566778888888888899999988777776543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=80.11  E-value=11  Score=36.31  Aligned_cols=85  Identities=16%  Similarity=0.105  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       193 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  272 (300)
                      +.++.+.-.++.+++.........-+-.+-.|++.+....+++.+...+|.++...+...-... .-|--.+.+.+++.+
T Consensus       564 ~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  642 (654)
T TIGR00926       564 SILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENFS-VQAAEFFLFASLMLV  642 (654)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHHH
Confidence            3455566677788888877777777778889999999999999999999999888777654322 223334444555555


Q ss_pred             HHHHHh
Q 022246          273 LLALGM  278 (300)
Q Consensus       273 ~~~~~~  278 (300)
                      +++++.
T Consensus       643 ~~~~f~  648 (654)
T TIGR00926       643 VMAIFS  648 (654)
T ss_pred             HHHHHH
Confidence            555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-14

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 93/226 (41%), Gaps = 31/226 (13%)
Query: 94  QAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------AKDLGIAENTVLQGWIV 147
             + +S  +     VA LG +LFGY   V++G +E L       ++L  +    L G+ V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61
Query: 148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA------------------ 189
           +S L G  +G   GG  +++FGR  + ++ AV         A                  
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121
Query: 190 TAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG--IXXXX 247
            A  V   +I R++            P+YI+E++P  IRG L S NQ  I  G  +    
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181
Query: 248 XXXXXXXXXXXW-----WRTMFGLAAIPSILLALGMGLSPESPRWL 288
                      W     WR MF    IP++L  + +   PESPRWL
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185
           A+  +A+DL + E  V    ++ + L    V     G ++D+ GR     +         
Sbjct: 22  AIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79

Query: 186 FLCATAQSVQTMIIGRVLAGIGIG----ISSAIVP-LYISEISPTEIRGALGSVNQLFIC 240
            +  T  S+  +I    + G+G G    ++  +   LY      T++R A   +N   + 
Sbjct: 80  LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY----ERTQLRHANSLLNMGILV 135

Query: 241 VGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS-PES 284
             +LA L+ GL        WR  +    +    +   M    PE+
Sbjct: 136 SPLLAPLIGGLLDT--MWNWRACYLFLLVLCAGVTFSMARWMPET 178

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRTFQLDAVPLAA 183
           YL +    A +     W           G+   G ++DK      G T  F +  V +A 
Sbjct: 278 YLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335

Query: 184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI 243
             +    A +    +I  ++ G  I     ++ L+  E++P   + A G+        G 
Sbjct: 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP---KKAAGTAAGFTGLFGY 392

Query: 244 LAALVAGLPLAG---NPLWWRTMFGLAAIPSILLAL 276
           L   VA   + G   +   W   F +    SIL  +
Sbjct: 393 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.93
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.91
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.86
2xut_A	524	Proton/peptide symporter family protein; transport	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.72
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.63
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.63
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.58
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.55
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.51
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.25
2xut_A	524	Proton/peptide symporter family protein; transport	99.13

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.93  E-value=3.1e-25  Score=201.61  Aligned_cols=198  Identities=33%  Similarity=0.571  Sum_probs=171.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCh------hhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHH
Q 022246          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAE------NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT  173 (300)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~  173 (300)
                      +..+.+.++++++.++.+++.++++..++.+.++++.+.      .....+++.+.+.+|.++|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            445666677788889999999999999999999885432      12234889999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHH
Q 022246          174 FQLDAVPLAAGAFLCA------------------TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN  235 (300)
Q Consensus       174 ~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  235 (300)
                      ++++.+++.++.++++                  +++|+++++++|+++|++.|+..+....+++|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999998                  4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccCC-------CCchHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhcCcccc
Q 022246          236 QLFICVGILAALVAGLPLAGN-------PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQVFLHDYI  297 (300)
Q Consensus       236 ~~~~~~g~~~~~~~~~~~~~~-------~~~w~~~f~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~  297 (300)
                      ..+..+|.++++.++..+...       ..+||+.+.+..+..++..+..+++||+|+++..+++.++.
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a  236 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQA  236 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHH
Confidence            999999999888887665431       24689999988888888888889999999999888776554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=1.5e-23  Score=187.61  Aligned_cols=182  Identities=18%  Similarity=0.203  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHH
Q 022246          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (300)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~  182 (300)
                      +..+..+++..+..++......+..|.+.+++|++..+.  +++.+++.++..++.+++|+++||+|||++++.+.++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            344555566667777777788889999999999999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc-CCCC
Q 022246          183 AGAFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-GNPL  258 (300)
Q Consensus       183 ~~~~~~---~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~  258 (300)
                      ++.+++   +++++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|++++.+. ....
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999998   888999999999999999999999999999999999999999999999999999999999999987 5423


Q ss_pred             c------------------------hHHHHHHhHHHHHHHHHHhhc--CCCChh
Q 022246          259 W------------------------WRTMFGLAAIPSILLALGMGL--SPESPR  286 (300)
Q Consensus       259 ~------------------------w~~~f~~~~~~~~~~~~~~~~--~pe~~~  286 (300)
                      .                        ||+.|++.+++.++..+++++  .||+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS  236 (438)
T ss_dssp             CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred             cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            3                        999998887777665554433  466543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.91  E-value=1.8e-24  Score=194.21  Aligned_cols=184  Identities=17%  Similarity=0.131  Sum_probs=165.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhH
Q 022246          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (300)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~  179 (300)
                      +.++..+...++..+...+....+.+..|.+.+++ .+..+.  +++.+++.++..++.+++|+++||+|||++++++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            44566677777888888888888888999999999 998888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH----hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccC
Q 022246          180 PLAAGAFLCAT----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (300)
Q Consensus       180 ~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  255 (300)
                      +.+++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    99999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             CCCc-hHHHHHHhHHHHHHHHH-HhhcCCCChhH
Q 022246          256 NPLW-WRTMFGLAAIPSILLAL-GMGLSPESPRW  287 (300)
Q Consensus       256 ~~~~-w~~~f~~~~~~~~~~~~-~~~~~pe~~~~  287 (300)
                      . .+ ||+.|++.+++.++..+ ..+++||+++.
T Consensus       181 ~-~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          181 W-FNDWHAALYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             H-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             H-hccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence            5 66 99999999988866554 45667877654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=9e-23  Score=179.14  Aligned_cols=178  Identities=17%  Similarity=0.197  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH
Q 022246          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~  186 (300)
                      ..+++..+...+....+.+..|.+.+++|.+..+.  +++.+++.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            34455666677777788888999999999999888  9999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHH
Q 022246          187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL  266 (300)
Q Consensus       187 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~  266 (300)
                      +.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+. .+||+.|++
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~  159 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998765 789999999


Q ss_pred             hHHHHHHHHH-HhhcCCCChhH
Q 022246          267 AAIPSILLAL-GMGLSPESPRW  287 (300)
Q Consensus       267 ~~~~~~~~~~-~~~~~pe~~~~  287 (300)
                      .+++.++..+ ..+++||+++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHCcccCCC
Confidence            8888776665 45567887654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.86  E-value=3.3e-21  Score=175.07  Aligned_cols=153  Identities=20%  Similarity=0.131  Sum_probs=138.7

Q ss_pred             hhhHHHHHHH-----hCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccc-cCchHHHHHHhHHHHHHHHHHHHhhhHHHH
Q 022246          124 NGALEYLAKD-----LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQTM  197 (300)
Q Consensus       124 ~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (300)
                      ....+++.++     +|++..+.  +++.+++.++..++++++|+++|| +|||++++.+.++.+++.++++++++++.+
T Consensus        34 ~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (491)
T 4aps_A           34 AILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL  111 (491)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred             HHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4466677777     99999888  999999999999999999999999 899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhccCCccc--chhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246          198 IIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (300)
Q Consensus       198 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  275 (300)
                      +++|++.|++.+...+...+++.|++|+++  |+.++++++.+..+|..++|.+++.+.+. .+||+.|++.++..++..
T Consensus       112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~  190 (491)
T 4aps_A          112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHVAFSLAAIGMFIGL  190 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988  77888889999999999999999998776 789999999887776655


Q ss_pred             HHhh
Q 022246          276 LGMG  279 (300)
Q Consensus       276 ~~~~  279 (300)
                      +..+
T Consensus       191 ~~~~  194 (491)
T 4aps_A          191 LVYY  194 (491)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.83  E-value=1.3e-19  Score=165.86  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=138.4

Q ss_pred             hhhHHHHHHHhC------CChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc-CchHHHHHHhHHHHHHHHHHHHhh-hHH
Q 022246          124 NGALEYLAKDLG------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQ  195 (300)
Q Consensus       124 ~~~~~~~~~~~~------~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~  195 (300)
                      ....+++.+++|      ++..+.  +++.+++.++..++.+++|+++||+ |||+++..+.++.+++.+++++++ +++
T Consensus        33 ~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (524)
T 2xut_A           33 NILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ  110 (524)
T ss_dssp             HHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            445667888899      998888  9999999999999999999999999 999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHH---HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHH
Q 022246          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV---NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (300)
Q Consensus       196 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  272 (300)
                      .+++.|++.|++.+...+...+++.|++|+++|+++.+.   +..+..+|.+++|.+++.+.+. .+||+.|++.+++.+
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~  189 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMF  189 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999876666   8889999999999999988765 789999999888877


Q ss_pred             HHHHHhhc
Q 022246          273 LLALGMGL  280 (300)
Q Consensus       273 ~~~~~~~~  280 (300)
                      +..+.+++
T Consensus       190 ~~~~~~~~  197 (524)
T 2xut_A          190 VATVFFWL  197 (524)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            66555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.72  E-value=6.5e-17  Score=144.85  Aligned_cols=157  Identities=17%  Similarity=0.114  Sum_probs=131.6

Q ss_pred             hhhhHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhcccc--CchHHHHHHhHHHH-HHHHHHHHh--hhHHH
Q 022246          123 VNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQLDAVPLA-AGAFLCATA--QSVQT  196 (300)
Q Consensus       123 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~  196 (300)
                      .....|. +.+.+|.+..+.  +++.+...++..++.++.|+++||+  |||+.+..+.++.. ++.++..+.  .+.+.
T Consensus       271 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T 1pw4_A          271 ILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV  348 (451)
T ss_dssp             HHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence            3344454 444589998888  8999999999999999999999999  99999888777766 566665555  36777


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  275 (300)
                      ++++.++.|++.++..+....++.|.+|+++|++++|+.+....+ |..++|.+.+.+.+. .||++.|++.+++.++..
T Consensus       349 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~  427 (451)
T 1pw4_A          349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAV  427 (451)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHH
Confidence            788888999998888888899999999999999999999999999 999999999998876 789999999988887776


Q ss_pred             HHhhcCC
Q 022246          276 LGMGLSP  282 (300)
Q Consensus       276 ~~~~~~p  282 (300)
                      ++.++++
T Consensus       428 ~~~~~~~  434 (451)
T 1pw4_A          428 ILLIVVM  434 (451)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.63  E-value=2.1e-15  Score=134.35  Aligned_cols=143  Identities=10%  Similarity=0.030  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  223 (300)
                      ++..++..++..++.++.|+++||+|||+++..+.++.++..++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67777777888889999999999999999999888888887777777778888888888888887777777888999999


Q ss_pred             CcccchhhHHH-HHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHh-hcCCCChhH
Q 022246          224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM-GLSPESPRW  287 (300)
Q Consensus       224 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~pe~~~~  287 (300)
                      |++.|+++.++ ++....+|.+++|.++|.+.+. .|++..|++.+++.++..+.. ++.||+++.
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~  406 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence            99999999998 5788889999999999988765 679999998888877766654 446665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.63  E-value=4.4e-15  Score=132.50  Aligned_cols=153  Identities=12%  Similarity=0.010  Sum_probs=124.9

Q ss_pred             hhhHHH-HHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH
Q 022246          124 NGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV  202 (300)
Q Consensus       124 ~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  202 (300)
                      .+...+ +.+.+|.+..+.  ++..+...++..++.+++|+++||+|||+++..+.++.+++.++..+.++.+.++. .+
T Consensus       279 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  355 (438)
T 3o7q_A          279 SYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LT  355 (438)
T ss_dssp             HHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HH
T ss_pred             HHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HH
Confidence            445556 566669998888  89999999999999999999999999999999999999998888888887766554 48


Q ss_pred             HHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCc-hHHHHHHhHHHHHHHHHHhhcC
Q 022246          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLALGMGLS  281 (300)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~~  281 (300)
                      +.|++.+..++....+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+. .| ++..|++.+++.++..++.++.
T Consensus       356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
T 3o7q_A          356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIFIFARFR  432 (438)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-HTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999976 888888877 5568999999999998876 55 8888887766655554444444


Q ss_pred             C
Q 022246          282 P  282 (300)
Q Consensus       282 p  282 (300)
                      +
T Consensus       433 ~  433 (438)
T 3o7q_A          433 S  433 (438)
T ss_dssp             C
T ss_pred             H
Confidence            3

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.58  E-value=1.2e-15  Score=138.34  Aligned_cols=166  Identities=17%  Similarity=0.062  Sum_probs=120.0

Q ss_pred             HHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHh-----hhH
Q 022246          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSV  194 (300)
Q Consensus       120 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~  194 (300)
                      ...+....+.+.+..+.+....  ........++..++.++.+++.||+|||+.++.+..+.+++.+..+..     ++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~  370 (491)
T 4gc0_A          293 INVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI  370 (491)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             hhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence            3455557788888888877666  566777778888999999999999999999999888888777665542     122


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCC-----CCchHHHHHHhHH
Q 022246          195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-----PLWWRTMFGLAAI  269 (300)
Q Consensus       195 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~w~~~f~~~~~  269 (300)
                      ..++...++.+....+..++.+.+.+|.+|++.|++++|+......+|+++++.+.+.+...     ..++.+.|++.++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~  450 (491)
T 4gc0_A          371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC  450 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            22222222222222334567788999999999999999999999999998888776665431     1235567788777


Q ss_pred             HHHHHHH-HhhcCCCChhH
Q 022246          270 PSILLAL-GMGLSPESPRW  287 (300)
Q Consensus       270 ~~~~~~~-~~~~~pe~~~~  287 (300)
                      ++++..+ .++++|||+..
T Consensus       451 ~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          451 MGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHHheecCCCCC
Confidence            7766655 55778999754

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.55  E-value=7.2e-16  Score=137.31  Aligned_cols=154  Identities=14%  Similarity=0.084  Sum_probs=106.9

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHH---HHHHhhhHH-HHHHHH
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF---LCATAQSVQ-TMIIGR  201 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~---~~~~~~~~~-~l~~~~  201 (300)
                      ...++++++|++..+.  +++.+.+.++..++++++|+++||+|||++++.+.++++++..   ...+.+... .++..+
T Consensus        30 ~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T 2cfq_A           30 FPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS  107 (417)
T ss_dssp             HHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH
T ss_pred             HHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445777799999888  9999999999999999999999999999999988777655322   112222211 233445


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCc--ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHHhh
Q 022246          202 VLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~  279 (300)
                      ++.|++.+..++.....+.++.++  ++|+...+....+..+|..++|.+++.+.+  .+|++.|++.+++.++..+..+
T Consensus       108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~  185 (417)
T 2cfq_A          108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLF  185 (417)
T ss_dssp             HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHH
Confidence            555555444444444444444433  345777788777778899999999988864  5799999988777655555555


Q ss_pred             cCCC
Q 022246          280 LSPE  283 (300)
Q Consensus       280 ~~pe  283 (300)
                      +.+|
T Consensus       186 ~~~~  189 (417)
T 2cfq_A          186 FAKT  189 (417)
T ss_dssp             SSCC
T ss_pred             HcCc
Confidence            5543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.51  E-value=9.2e-14  Score=125.94  Aligned_cols=158  Identities=13%  Similarity=0.009  Sum_probs=117.8

Q ss_pred             hHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHH-----HHhHHHHHHHHHHHHhh--------
Q 022246          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-----LDAVPLAAGAFLCATAQ--------  192 (300)
Q Consensus       126 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~-----~~~~~~~~~~~~~~~~~--------  192 (300)
                      ...++.+.++.+....  ++..+...++..++.++.|+++||+|||+...     .+.++.+++.++.+...        
T Consensus       306 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (491)
T 4aps_A          306 LATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK  383 (491)
T ss_dssp             HHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred             HHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            3345555577764455  67778888888899999999999999986554     66666666666555533        


Q ss_pred             -hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHH
Q 022246          193 -SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (300)
Q Consensus       193 -~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~  271 (300)
                       +.+.+++..++.|++.+...+....++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+  .++.+.|++.+++.
T Consensus       384 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~~~~~~  461 (491)
T 4aps_A          384 VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--KSEVAYFSYFGLGS  461 (491)
T ss_dssp             CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--SSTTHHHHHTHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Confidence             667777888999999999899999999999999999999999999999999999999998875  45667788877777


Q ss_pred             HHHHHHh-hcCCCChhH
Q 022246          272 ILLALGM-GLSPESPRW  287 (300)
Q Consensus       272 ~~~~~~~-~~~pe~~~~  287 (300)
                      ++..++. ++.++.++.
T Consensus       462 ~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          462 VVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            6665544 444554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.25  E-value=2.2e-12  Score=112.73  Aligned_cols=136  Identities=16%  Similarity=0.107  Sum_probs=104.5

Q ss_pred             HHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHH-HHHHHH--HHHH--hhhHHHHHHHH
Q 022246          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP-LAAGAF--LCAT--AQSVQTMIIGR  201 (300)
Q Consensus       127 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~l~~~~  201 (300)
                      ..++++.+|.+..+.  +++.+...++..++.++.+++.||+|++.  ..+..+ ..++..  ....  .++.+.+++..
T Consensus       223 ~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (375)
T 2gfp_A          223 GVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA  298 (375)
T ss_dssp             SCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence            334556688887777  89999999999999999999999998832  223222 222221  2222  24667777888


Q ss_pred             HHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (300)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~  268 (300)
                      ++.|++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+.+. .+|+..+++.+
T Consensus       299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~  363 (375)
T 2gfp_A          299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT-GQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccHHHHHHH
Confidence            89999999999999999999998 8899999999999999999999998888654 66777776643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.13  E-value=1.8e-10  Score=105.12  Aligned_cols=142  Identities=16%  Similarity=0.058  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhc----cccCc----hHHHHHHhHHHHHHHHHHHHh---------hhHHHHHHHHHHHHH
Q 022246          144 GWIVSSLLAGATVGSFTGGSLA----DKFGR----TRTFQLDAVPLAAGAFLCATA---------QSVQTMIIGRVLAGI  206 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~ls----d~~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~l~G~  206 (300)
                      +++.....++..++.++.+++.    +|.|+    ++.+..+.++.+++.++.++.         .+.+.+++..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            5556666666667777777764    55543    245667777777777766653         366777788899999


Q ss_pred             hhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhccCCC-Cch---------HHHHHHhHHHHHHHHH
Q 022246          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-LWW---------RTMFGLAAIPSILLAL  276 (300)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~w---------~~~f~~~~~~~~~~~~  276 (300)
                      +.+...+....++.|.+|+++||+++|+++....+|..++|.+.+.+.+.. .+|         +..|++.+++.++..+
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI  497 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987631 123         3337777776666655


Q ss_pred             Hhhc-CCCCh
Q 022246          277 GMGL-SPESP  285 (300)
Q Consensus       277 ~~~~-~pe~~  285 (300)
                      +.++ .++.+
T Consensus       498 ~~~~~~~~~~  507 (524)
T 2xut_A          498 VFALYARSYQ  507 (524)
T ss_dssp             HHC-------
T ss_pred             HHHHHHHHhc
Confidence            4444 44443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-08
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-05
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 53.5 bits (127), Expect = 1e-08
 Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 8/200 (4%)

Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
                 G   +         A+ YL  + G +   +  G+ +S +        F  GS++
Sbjct: 27  FLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVS 83

Query: 166 DKFGRTRTFQLDAVPLAAGAFLC----ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221
           D+           +  AA             S+  M +   L G   G+        +  
Sbjct: 84  DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143

Query: 222 ISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280
               + RG + SV      VG  +  L+  L +A    W   ++  A    ++      +
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203

Query: 281 SPESPRWLFQVFLHDYISHI 300
             ++P+      + +Y +  
Sbjct: 204 MRDTPQSCGLPPIEEYKNDY 223

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 22/185 (11%), Positives = 49/185 (26%), Gaps = 8/185 (4%)

Query: 110 CLGAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF 168
            L    + + +G        +L     I+++    G I +++   + +     G L+DK 
Sbjct: 13  GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 169 GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIG-----ISSAIVPLYISEIS 223
           G  +        +               +    ++  I  G       +A  P   + I 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283
               R                A   + + +          +  +    IL  L      +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 284 SPRWL 288
           +P   
Sbjct: 191 APSSA 195

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 26/290 (8%), Positives = 72/290 (24%), Gaps = 2/290 (0%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRAT 60
              +            R+               ++  +               +    A 
Sbjct: 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178

Query: 61  QGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHL 120
                LF +     S    A+A     +      A +       +     +  +   Y +
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238

Query: 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180
                A  + +      + T + G++ +          F    + ++ G      L    
Sbjct: 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298

Query: 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFI 239
           ++      + A S   ++I + L    +         YI+                  F 
Sbjct: 299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358

Query: 240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289
            + ++   V    +  + + ++  + +  + ++   L    +   P  L 
Sbjct: 359 QLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.7
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.65
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.61

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.5e-25  Score=193.46  Aligned_cols=184  Identities=17%  Similarity=0.122  Sum_probs=159.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHh
Q 022246           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (300)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~  178 (300)
                      ++.+|.++..++++.+..+++...++...|++. |+|++.++.  |++.+++.++++++++++|+++||+|||+++..+.
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   96 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   96 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            345677777788888888888878888888876 589999999  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh----hHHHHHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 022246          179 VPLAAGAFLCATAQ----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (300)
Q Consensus       179 ~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  254 (300)
                      ++.+++.+++++++    +++.++++|++.|++.+..++....++.|++|+++|++++++.+.+..+|..+++++++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_          97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence            99999998887764    67789999999999999999999999999999999999999999999999999999888766


Q ss_pred             CCCCchHHHHHHhHHHHHHHHHH-hhcCCCCh
Q 022246          255 GNPLWWRTMFGLAAIPSILLALG-MGLSPESP  285 (300)
Q Consensus       255 ~~~~~w~~~f~~~~~~~~~~~~~-~~~~pe~~  285 (300)
                      ....+||+.|++.+++.++..++ +++++++|
T Consensus       177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             hhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            55468999999988888666554 44455544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.3e-17  Score=144.18  Aligned_cols=150  Identities=9%  Similarity=0.015  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccC
Q 022246          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (300)
Q Consensus       144 ~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  223 (300)
                      +...+...++..++..+.+++.||+|+|+++..+.++.+++.++..+.++.+.+++..++.|++.+...+....++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            66777788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhHHHH-HHHHHHHHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHHHH-hhcCCCChhHHHhhcCc
Q 022246          224 PTEIRGALGSVN-QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGLSPESPRWLFQVFLH  294 (300)
Q Consensus       224 ~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~pe~~~~~~~~~~~  294 (300)
                      |+++|+++.++. +....+|..++|.++|.+.+. .||++.|++.+++.++..++ .++++++.+....+++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~  413 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQV  413 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhHhhh
Confidence            999999999985 566779999999999999876 78999999988888766554 44455444333333333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.1e-15  Score=134.29  Aligned_cols=156  Identities=17%  Similarity=0.131  Sum_probs=120.9

Q ss_pred             hhhhhHHHHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHH-----HhhhHHH
Q 022246          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-----TAQSVQT  196 (300)
Q Consensus       122 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~-----~~~~~~~  196 (300)
                      ...+...++.+.++.+..+.  ++..++..++..++.+++|+++||++|++..........+..+...     ...+.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (447)
T d1pw4a_         268 ILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV  345 (447)
T ss_dssp             HHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred             chhhhhhhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHH
Confidence            44445667777889988888  8999999999999999999999999987654444333333222222     1346777


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhccCCcccchhhHHHHHHHHHH-HHHHHHHhhhhccCCCCchHHHHHHhHHHHHHHH
Q 022246          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (300)
Q Consensus       197 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  275 (300)
                      .+++.++.|++.++..+....++.|.+|++.||++.|+.+....+ |.+++|++.+.+.+. .||+..|++.+++.++..
T Consensus       346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~  424 (447)
T d1pw4a_         346 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAV  424 (447)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence            778888899998888899999999999999999999998877766 567789999888876 889999988887776665


Q ss_pred             HHhhc
Q 022246          276 LGMGL  280 (300)
Q Consensus       276 ~~~~~  280 (300)
                      ++.++
T Consensus       425 ~~~~~  429 (447)
T d1pw4a_         425 ILLIV  429 (447)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.2e-15  Score=131.51  Aligned_cols=166  Identities=14%  Similarity=0.063  Sum_probs=114.9

Q ss_pred             HHHHHHhhhhhHH-HHHHHhCCChhhhHHHHHHHHHHHHHHHHHhhhhhhccccCchHHHHHHhHHHHHHHHHHHHhhhH
Q 022246          116 FGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV  194 (300)
Q Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~i~~~~~g~lsd~~Grr~~~~~~~~~~~~~~~~~~~~~~~  194 (300)
                      ..+......+.+| ++.+++|++..+.  |++.+++.++..++++++|+++||+|||++++.+.++..++.++..+..+.
T Consensus        19 ~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~   96 (417)
T d1pv7a_          19 YFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG   96 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3333445555555 5788899999998  999999999999999999999999999999999999888888888877665


Q ss_pred             HHHH----HHHHHHHHhhhhhhhhhhhhhhccCCc--ccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCchHHHHHHhH
Q 022246          195 QTMI----IGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (300)
Q Consensus       195 ~~l~----~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~f~~~~  268 (300)
                      ....    +.+++.+.+.+...........+..++  +++....+........+..+++.+++.+..  .+|++.++...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~  174 (417)
T d1pv7a_          97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGS  174 (417)
T ss_dssp             HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc--ccccccccchh
Confidence            5443    344444444444444444333333332  234566777778888888999999988865  34555555555


Q ss_pred             HHH-HHHHHHhhcCCCCh
Q 022246          269 IPS-ILLALGMGLSPESP  285 (300)
Q Consensus       269 ~~~-~~~~~~~~~~pe~~  285 (300)
                      ... ++..+..++.++++
T Consensus       175 ~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         175 GCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             HHHHHHHHHHHSSCCCSC
T ss_pred             hHHHHHHHHHHHHhcccc
Confidence            444 44445555555543