Citrus Sinensis ID: 022249


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MVVGSRVSVPSWMSAAAATRVDLEGSVSSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEKLQDIS
cccccccccccccHHHHHHHHccccccccEEEEcccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHccccEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccHcccHHHHHHcccccEEEEccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccEEccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHccccHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mvvgsrvsvpswmSAAAATRVDLEGSVSSVtvssetsskeeALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAqaagvpyeglcrtasfesnmmlsdmrnspsctcavpgtepapecnrykgtLDLFYKVVRQEGFARLWRGTYASLAlsvptvgiylpcydgfrnlmenfttgnapmltpyvplvAGSVARSLACISCYPIELARTRMQAFtetqsgvkppgvwKTLVGVvnplksrnssqklqNYRILWTGVGaqlardvpfsaicwstlepvrfySLEKLQDIS
mvvgsrvsvpswmSAAAATRVDLEGSVSSVTVssetsskeealRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAqaagvpyeGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTetqsgvkppgvWKTLVGVVnplksrnssqklqNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEKLQDIS
MVVGSRVSVPSWMSAAAATRVDLEGsvssvtvssetsskeeALRHSEAINDFSLgfaerafsaagaaivsavivNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEKLQDIS
************************************************INDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFE*************CTCAVPGT**APECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLK*****QKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLE******
********************************************************AERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAG****GLC**ASFESNMMLSDMRNSPSCTCA**********NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLME**********TPYVPLVAGSVARSLACISCYPIELARTR******************TLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYS*EK*****
**********SWMSAAAATR***********************RHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEKLQDIS
*V*GSRVSVPSWMSAAAATRVDLEGSVSSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEKLQ***
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MVVGSRVSVPSWMSAAAATRVDLEGSVSSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVRFYSLEKLQDIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
Q944H5413 Mitochondrial carrier pro no no 0.813 0.590 0.604 8e-82
Q6DHC3 353 Solute carrier family 25 yes no 0.68 0.577 0.333 2e-23
Q8TBP6 338 Solute carrier family 25 yes no 0.693 0.615 0.319 3e-23
Q498U3 337 Solute carrier family 25 yes no 0.7 0.623 0.317 2e-22
Q0VCH6 338 Solute carrier family 25 yes no 0.673 0.597 0.310 5e-22
Q17QI7 359 Solute carrier family 25 no no 0.696 0.582 0.301 3e-21
Q9BZJ4 359 Solute carrier family 25 no no 0.71 0.593 0.302 3e-21
Q9D8K8 359 Solute carrier family 25 yes no 0.696 0.582 0.301 3e-20
Q4V8K4 359 Solute carrier family 25 no no 0.71 0.593 0.302 4e-20
Q8BGP6 337 Solute carrier family 25 no no 0.7 0.623 0.297 6e-20
>sp|Q944H5|MTM1_ARATH Mitochondrial carrier protein MTM1 OS=Arabidopsis thaliana GN=MTM1 PE=2 SV=1 Back     alignment and function desciption
 Score =  303 bits (777), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 153/253 (60%), Positives = 189/253 (74%), Gaps = 9/253 (3%)

Query: 46  SEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPY-----EGLCRTA 100
            + +++ ++GF ER FSAAGAA++SAV +NPLDV KTRLQAQAAG+ Y       + R A
Sbjct: 51  DKGLSENNIGFTERVFSAAGAAVLSAVTLNPLDVVKTRLQAQAAGMSYSHPLSNSIGRMA 110

Query: 101 SFESNMMLSDMRNSPSCTCA-VPGTEPA--PECNRYKGTLDLFYKVVRQEGFARLWRGTY 157
            F  NMM +D+R SPSC  A V GT     P+C +YKGT D+F K++RQEG  RLWRGT 
Sbjct: 111 FFGPNMMFADLRCSPSCARAGVEGTVSICPPDCFQYKGTFDVFTKIIRQEGLGRLWRGTN 170

Query: 158 ASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIEL 217
           A LAL+VP VGIYLP YD FRN +E  +   AP +T  VP VAGS+ARSLAC  CYPI+L
Sbjct: 171 AGLALAVPMVGIYLPFYDMFRNRLEELSREKAPAMTFCVPTVAGSLARSLACTVCYPIDL 230

Query: 218 ARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQ-KLQNYRILWTGVGAQLARDVP 276
           ARTRMQAF E ++GVKPPGV+KTLVGV + +++ N+ +  L NYR LW G+GAQLARDVP
Sbjct: 231 ARTRMQAFKEAKAGVKPPGVFKTLVGVFSEVRTANNLESSLHNYRGLWRGLGAQLARDVP 290

Query: 277 FSAICWSTLEPVR 289
           FSAICWSTLEP++
Sbjct: 291 FSAICWSTLEPIK 303




Involved in the mitochondrial activation of MSD1 by specifically facilitating insertion of the essential manganese cofactor. Has the ability to activate iron regulon in an iron-dependent manner.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6DHC3|S2540_DANRE Solute carrier family 25 member 40 OS=Danio rerio GN=slc25a40 PE=2 SV=1 Back     alignment and function description
>sp|Q8TBP6|S2540_HUMAN Solute carrier family 25 member 40 OS=Homo sapiens GN=SLC25A40 PE=2 SV=1 Back     alignment and function description
>sp|Q498U3|S2540_RAT Solute carrier family 25 member 40 OS=Rattus norvegicus GN=Slc25a40 PE=2 SV=2 Back     alignment and function description
>sp|Q0VCH6|S2540_BOVIN Solute carrier family 25 member 40 OS=Bos taurus GN=SLC25A40 PE=2 SV=1 Back     alignment and function description
>sp|Q17QI7|S2539_BOVIN Solute carrier family 25 member 39 OS=Bos taurus GN=SLC25A39 PE=2 SV=2 Back     alignment and function description
>sp|Q9BZJ4|S2539_HUMAN Solute carrier family 25 member 39 OS=Homo sapiens GN=SLC25A39 PE=2 SV=2 Back     alignment and function description
>sp|Q9D8K8|S2539_MOUSE Solute carrier family 25 member 39 OS=Mus musculus GN=Slc25a39 PE=2 SV=1 Back     alignment and function description
>sp|Q4V8K4|S2539_RAT Solute carrier family 25 member 39 OS=Rattus norvegicus GN=Slc25a39 PE=2 SV=1 Back     alignment and function description
>sp|Q8BGP6|S2540_MOUSE Solute carrier family 25 member 40 OS=Mus musculus GN=Slc25a40 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
225454448 407 PREDICTED: solute carrier family 25 memb 0.956 0.705 0.692 1e-113
147812722 528 hypothetical protein VITISV_014580 [Viti 0.95 0.539 0.682 1e-112
297745394374 unnamed protein product [Vitis vinifera] 0.813 0.652 0.729 1e-103
224064175399 predicted protein [Populus trichocarpa] 0.963 0.724 0.661 1e-102
449432094 404 PREDICTED: solute carrier family 25 memb 0.953 0.707 0.642 1e-99
242079023399 hypothetical protein SORBIDRAFT_07g01943 0.953 0.716 0.674 1e-99
226507384398 mitochondrial carrier protein CGI-69 [Ze 0.95 0.716 0.678 5e-99
194696384398 unknown [Zea mays] 0.95 0.716 0.678 1e-98
308080630399 uncharacterized protein LOC100502509 [Ze 0.953 0.716 0.660 1e-98
413922178398 carrier protein CGI-69 [Zea mays] 0.95 0.716 0.678 2e-98
>gi|225454448|ref|XP_002276620.1| PREDICTED: solute carrier family 25 member 39-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/293 (69%), Positives = 244/293 (83%), Gaps = 6/293 (2%)

Query: 2   VVGSRVSVPSWMSAAAATRVDLEGSVSSVTVSSETSSKEEAL---RHSEAINDFSLGFAE 58
           +VGSR S+PSW+  AAATRVD+EG+VSS++ +    ++EE+    ++S+A++D  LGF +
Sbjct: 1   MVGSRPSLPSWI-GAAATRVDIEGNVSSMSDTMFRENREESAPPEQYSKALSDGDLGFGQ 59

Query: 59  RAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMRNSPSCT 118
           RAFSAAGAA +SA+IVNPLDVAKTRLQAQAAGV Y GLCR A FE+  M SD+R SPSCT
Sbjct: 60  RAFSAAGAAFISAIIVNPLDVAKTRLQAQAAGVSYHGLCRMAPFETVSMFSDVRYSPSCT 119

Query: 119 CAVPGTEPA--PECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDG 176
            A     P   P+C +Y+GTLD+F K++RQEGF RLWRGT ASLAL++PTVGIYLPCYD 
Sbjct: 120 RAALSDVPVCPPDCFQYRGTLDVFSKMIRQEGFMRLWRGTSASLALAMPTVGIYLPCYDI 179

Query: 177 FRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPG 236
           FRN ME FTT NAP LTPYVPLVAGS+ARSLACI+CYP+ELARTRMQAF ETQSG KPPG
Sbjct: 180 FRNFMEEFTTQNAPSLTPYVPLVAGSLARSLACITCYPVELARTRMQAFKETQSGTKPPG 239

Query: 237 VWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVR 289
           VWKTL GV++P++S N+ Q  Q+YR+LWTG+GAQLARDVPFSAICWSTLEP+R
Sbjct: 240 VWKTLHGVISPVRSTNNIQNFQSYRVLWTGLGAQLARDVPFSAICWSTLEPIR 292




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812722|emb|CAN61750.1| hypothetical protein VITISV_014580 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745394|emb|CBI40474.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224064175|ref|XP_002301398.1| predicted protein [Populus trichocarpa] gi|222843124|gb|EEE80671.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449432094|ref|XP_004133835.1| PREDICTED: solute carrier family 25 member 40-like [Cucumis sativus] gi|449477895|ref|XP_004155155.1| PREDICTED: solute carrier family 25 member 40-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242079023|ref|XP_002444280.1| hypothetical protein SORBIDRAFT_07g019430 [Sorghum bicolor] gi|241940630|gb|EES13775.1| hypothetical protein SORBIDRAFT_07g019430 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|226507384|ref|NP_001150430.1| mitochondrial carrier protein CGI-69 [Zea mays] gi|195639200|gb|ACG39068.1| mitochondrial carrier protein CGI-69 [Zea mays] Back     alignment and taxonomy information
>gi|194696384|gb|ACF82276.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|308080630|ref|NP_001183916.1| uncharacterized protein LOC100502509 [Zea mays] gi|238015420|gb|ACR38745.1| unknown [Zea mays] gi|414870516|tpg|DAA49073.1| TPA: hypothetical protein ZEAMMB73_432177 [Zea mays] Back     alignment and taxonomy information
>gi|413922178|gb|AFW62110.1| carrier protein CGI-69 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
TAIR|locus:2039055361 AT2G46320 [Arabidopsis thalian 0.7 0.581 0.682 1.5e-76
TAIR|locus:2132947413 MTM1 "AT4G27940" [Arabidopsis 0.716 0.520 0.620 4e-67
DICTYBASE|DDB_G0275985 366 mcfH "mitochondrial substrate 0.513 0.420 0.356 2.5e-20
SGD|S000003489 366 MTM1 "Mitochondrial protein of 0.483 0.396 0.322 1.5e-18
UNIPROTKB|E2RLV6338 SLC25A40 "Uncharacterized prot 0.453 0.402 0.373 3.8e-17
ASPGD|ASPL0000002744 466 AN6087 [Emericella nidulans (t 0.5 0.321 0.348 1.8e-16
UNIPROTKB|Q8TBP6338 SLC25A40 "Solute carrier famil 0.453 0.402 0.366 1.9e-16
UNIPROTKB|F1NFV0339 SLC25A40 "Uncharacterized prot 0.46 0.407 0.355 3.3e-16
UNIPROTKB|B4DFG5336 SLC25A39 "Solute carrier famil 0.456 0.407 0.366 5.4e-16
FB|FBgn0031039 387 Shawn "Shawn" [Drosophila mela 0.623 0.483 0.316 5.9e-16
TAIR|locus:2039055 AT2G46320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 148/217 (68%), Positives = 171/217 (78%)

Query:    75 NPLDVAKTRLQAQAAGVPYEGLCRTASFESNMML-SDMR-NSPSCTCAVPGTEPAPECNR 132
             NPLDV KTRLQAQAAGVPY+G CR   F++N  L  D+R NS    C + G+      N+
Sbjct:    40 NPLDVVKTRLQAQAAGVPYQGSCRLGCFDTNSTLVHDLRSNSAPGMCRITGSASVCSDNQ 99

Query:   133 YKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPML 192
             YKGTLD+FYK++RQEGF+RLWRGT ASL L++PTVGIY+PCYD FRN+ME FTT  +P L
Sbjct:   100 YKGTLDVFYKIIRQEGFSRLWRGTNASLTLAIPTVGIYMPCYDYFRNIMEEFTTEKSPSL 159

Query:   193 TPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRN 252
             T YVPLVAG++ARSLACISCYP+ELARTRMQAF  TQ  VK PGVWKTLV VVNP+K  N
Sbjct:   160 TVYVPLVAGTIARSLACISCYPVELARTRMQAFKGTQRNVKLPGVWKTLVDVVNPVKGSN 219

Query:   253 SSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPVR 289
             +      YR+LWTG+GAQLARDVPFSAICWS LEP R
Sbjct:   220 NG-----YRMLWTGLGAQLARDVPFSAICWSILEPTR 251




GO:0005215 "transporter activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006839 "mitochondrial transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2132947 MTM1 "AT4G27940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275985 mcfH "mitochondrial substrate carrier family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000003489 MTM1 "Mitochondrial protein of the mitochondrial carrier family" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLV6 SLC25A40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ASPGD|ASPL0000002744 AN6087 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TBP6 SLC25A40 "Solute carrier family 25 member 40" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NFV0 SLC25A40 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B4DFG5 SLC25A39 "Solute carrier family 25 member 39" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0031039 Shawn "Shawn" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 5e-19
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 5e-11
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 1e-06
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 5e-06
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
 Score = 80.0 bits (198), Expect = 5e-19
 Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 38/129 (29%)

Query: 53  SLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSDMR 112
            L F     +   A  ++A +  PLDV KTRLQ+ AAG                      
Sbjct: 2   PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSR------------------- 42

Query: 113 NSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLP 172
                              +YKG LD F K+ ++EG   L++G   +L    P   IY  
Sbjct: 43  -------------------KYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFG 83

Query: 173 CYDGFRNLM 181
            Y+  + L+
Sbjct: 84  TYETLKKLL 92


Length = 96

>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0761 361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 99.98
KOG0762 311 consensus Mitochondrial carrier protein [Energy pr 99.98
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 99.97
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 99.97
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 99.97
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.97
KOG0770 353 consensus Predicted mitochondrial carrier protein 99.97
KOG0766297 consensus Predicted mitochondrial carrier protein 99.97
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 99.96
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 99.96
KOG0751 694 consensus Mitochondrial aspartate/glutamate carrie 99.96
KOG0036463 consensus Predicted mitochondrial carrier protein 99.96
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.96
KOG0036463 consensus Predicted mitochondrial carrier protein 99.95
KOG0765333 consensus Predicted mitochondrial carrier protein 99.95
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.95
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.95
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.95
KOG0767 333 consensus Mitochondrial phosphate carrier protein 99.95
KOG0770353 consensus Predicted mitochondrial carrier protein 99.95
KOG0765333 consensus Predicted mitochondrial carrier protein 99.94
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 99.94
KOG0769 308 consensus Predicted mitochondrial carrier protein 99.94
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.93
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.93
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.91
KOG0769308 consensus Predicted mitochondrial carrier protein 99.91
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.89
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.89
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.88
KOG0766297 consensus Predicted mitochondrial carrier protein 99.81
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.78
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.71
KOG1519297 consensus Predicted mitochondrial carrier protein 99.67
KOG2745321 consensus Mitochondrial carrier protein [General f 99.52
KOG2954427 consensus Mitochondrial carrier protein [General f 99.4
KOG1519297 consensus Predicted mitochondrial carrier protein 99.28
KOG2745321 consensus Mitochondrial carrier protein [General f 99.2
KOG2954427 consensus Mitochondrial carrier protein [General f 98.17
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
Probab=100.00  E-value=1.3e-41  Score=297.77  Aligned_cols=219  Identities=24%  Similarity=0.280  Sum_probs=196.3

Q ss_pred             CcccccccccCCcccccccccccCCCCCCCHHHHHHHHhHHHHHHHhhcchHHHHHHHHHhhcCCCCCCCCcccccccch
Q 022249           26 SVSSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESN  105 (300)
Q Consensus        26 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~s~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~  105 (300)
                      +++++++++||..++.+....+..  ..++++..+++|+.+|+++..+.+|.|++|+|||+++....             
T Consensus        96 ~y~~iRig~Yd~~k~~~~~~~~~~--~~~~l~~~~l~G~taGaia~~~AnPtDlVKVrmQaeG~~~~-------------  160 (317)
T KOG0753|consen   96 SYGGIRIGLYDSLKELYVEKGEDE--ESLPLWKSILCGVTAGAIAQALANPTDLVKVRMQAEGRLRL-------------  160 (317)
T ss_pred             eecceEEEehHHHHHHhccCCCCc--ccccHHHHHHHHHhhhHHHHHhcCccceEEEEeeehhhhcc-------------
Confidence            568999999999997666554432  68899999999999999999999999999999999985421             


Q ss_pred             hhhhcccCCCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhhhccchhccchhhhhhhhhccceeEhhhHHHHHHHHhccc
Q 022249          106 MMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFT  185 (300)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~y~~~k~~l~~~~  185 (300)
                                           .+...+|.+..+++++|+++||++|||+|+.|++.|.++-+..-+++||..|+.+.+..
T Consensus       161 ---------------------~g~~~Ry~g~~~Af~~I~r~eGvrGLWkG~~Pn~qRaalvn~~el~tYD~~K~~li~~~  219 (317)
T KOG0753|consen  161 ---------------------QGEPPRYSGTLNAFRTIYRTEGVRGLWKGVVPNIQRAALVNCGELVTYDIVKHTLIDNL  219 (317)
T ss_pred             ---------------------cCCCCccccHHHHHHHHHHhcCcceeeeccchhHHHHHHHhccchhHHHHHHHHHHhcc
Confidence                                 22345799999999999999999999999999999999999999999999999998766


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccCCCCCCCCCHHHHHHHHhhcccccCcccccccHHHHhh
Q 022249          186 TGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWT  265 (300)
Q Consensus       186 ~~~~~~~~~~~~~~ag~~ag~~~~~v~~P~dvvktr~q~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~Gi~glyr  265 (300)
                      .-.|   +...|++++++||++++++..|.||||||||.+.. ..+..|+|..||+.+++++|          |+..|||
T Consensus       220 ~l~D---n~~~HfvSs~~AGl~aai~s~P~DVVKTRmMNqp~-g~~~~Ykgs~DC~~k~v~~E----------G~~AlYK  285 (317)
T KOG0753|consen  220 DLED---NIPTHFVSSFCAGLAAAILSSPVDVVKTRMMNQPP-GRGGLYKGSLDCLIKTVKNE----------GFFALYK  285 (317)
T ss_pred             cccc---chHHHHHHHHHHHHHHHHhcCcHHHHHhhhccCCC-CcCccccchHHHHHHHHHhc----------ChHHHHc
Confidence            4332   48899999999999999999999999999999976 44569999999999999999          9999999


Q ss_pred             hhHHHHHhhhhhhhHHHHhHHHHHHHHHh
Q 022249          266 GVGAQLARDVPFSAICWSTLEPVRFYSLE  294 (300)
Q Consensus       266 G~~~~~lr~~p~~~i~f~~ye~~k~~l~~  294 (300)
                      ||.|+++|..|.+.++|.+||++|++.-.
T Consensus       286 GF~Psw~RlGpWnvifwvtyEQlrr~~g~  314 (317)
T KOG0753|consen  286 GFIPSWLRLGPWNVIFWVTYEQLRRLLGA  314 (317)
T ss_pred             cccccceecCCeeeeeeeeHHHHHHHhcc
Confidence            99999999999999999999999998643



>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 5e-05
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure

Iteration: 1

Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 131 NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAP 190 +YKG +D ++ +++GF WRG A++ PT + D ++ + + Sbjct: 48 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107 Query: 191 MLTPYVP-LVAGSVARSLACISCYPIELARTRMQA 224 + L +G A + + YP++ ARTR+ A Sbjct: 108 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA 142

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 1e-26
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 1e-19
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 2e-11
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 6e-08
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 6e-25
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-24
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 3e-11
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
 Score =  105 bits (263), Expect = 1e-26
 Identities = 35/249 (14%), Positives = 78/249 (31%), Gaps = 54/249 (21%)

Query: 41  EALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTA 100
           ++++          G   R  + +    ++  +  P DV K R QAQA            
Sbjct: 89  DSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR----------- 137

Query: 101 SFESNMMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASL 160
                                     A    RY+ T++ +  + R+EG   LW+GT  ++
Sbjct: 138 --------------------------AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNV 171

Query: 161 ALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELART 220
           A +       L  YD  ++ +         +        +   A     +   P+++ +T
Sbjct: 172 ARNAIVNCAELVTYDLIKDTLLKANLMTDDLPC---HFTSAFGAGFCTTVIASPVDVVKT 228

Query: 221 RMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAI 280
           R        +  +        + ++          + +  R  + G      R   ++ +
Sbjct: 229 RYM----NSALGQYHSAGHCALTML----------RKEGPRAFYKGFMPSFLRLGSWNVV 274

Query: 281 CWSTLEPVR 289
            + T E ++
Sbjct: 275 MFVTYEQLK 283


>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 100.0
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=4e-39  Score=294.44  Aligned_cols=211  Identities=19%  Similarity=0.243  Sum_probs=182.5

Q ss_pred             cccccccccCCcccccccccccCCCCCCCHHHHHHHHhHHHHHHHhhcchHHHHHHHHHhhcCCCCCCCCcccccccchh
Q 022249           27 VSSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNM  106 (300)
Q Consensus        27 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~s~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~  106 (300)
                      ..++.++.||..++.......     ..+....+++|++||+++.++++|+|+||+|||++...                
T Consensus        80 ~~~i~f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----------------  138 (303)
T 2lck_A           80 FASVRIGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA----------------  138 (303)
T ss_dssp             HHHHTTTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----------------
Confidence            346777888887755433211     36788999999999999999999999999999998621                


Q ss_pred             hhhcccCCCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhhhccchhccchhhhhhhhhccceeEhhhHHHHHHHHhcccC
Q 022249          107 MLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTT  186 (300)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~y~~~k~~l~~~~~  186 (300)
                                           .....|+++.+++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+...
T Consensus       139 ---------------------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~  197 (303)
T 2lck_A          139 ---------------------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL  197 (303)
T ss_dssp             ---------------------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred             ---------------------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                                 11236889999999999999999999999999999999999999999999998865432


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccCCCCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhh
Q 022249          187 GNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTG  266 (300)
Q Consensus       187 ~~~~~~~~~~~~~ag~~ag~~~~~v~~P~dvvktr~q~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~Gi~glyrG  266 (300)
                      .   ..+....+++|++||++++++++|+||||+|||.+..    ..|+++++|+++|+++|          |++|||||
T Consensus       198 ~---~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----~~y~~~~~~~~~i~~~e----------G~~glyrG  260 (303)
T 2lck_A          198 M---TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----GQYHSAGHCALTMLRKE----------GPRAFYKG  260 (303)
T ss_dssp             C---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----SSCCSHHHHHHHHHHSS----------CTHHHHSC
T ss_pred             C---CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----cccCCHHHHHHHHHHHc----------ChHHhhcc
Confidence            1   2356789999999999999999999999999999863    36999999999999999          99999999


Q ss_pred             hHHHHHhhhhhhhHHHHhHHHHHHHHHhhh
Q 022249          267 VGAQLARDVPFSAICWSTLEPVRFYSLEKL  296 (300)
Q Consensus       267 ~~~~~lr~~p~~~i~f~~ye~~k~~l~~~~  296 (300)
                      +.|+++|.+|+.+++|.+||.+|+.+.+..
T Consensus       261 ~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~  290 (303)
T 2lck_A          261 FMPSFLRLGSWNVVMFVTYEQLKRALMAAY  290 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998876554



>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 300
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 6e-12
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 9e-06
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
 Score = 62.8 bits (151), Expect = 6e-12
 Identities = 42/234 (17%), Positives = 79/234 (33%), Gaps = 44/234 (18%)

Query: 51  DFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMMLSD 110
           D +L F +   +   AA +S   V P++  K  LQ Q                       
Sbjct: 1   DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQ----------------------- 37

Query: 111 MRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIY 170
                        ++      +YKG +D   ++ +++GF   WRG  A++    PT  + 
Sbjct: 38  -----------HASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALN 86

Query: 171 LPCYDGFRNLMENFTTGNAPMLTPYV-PLVAGSVARSLACISCYPIELARTRMQAFTETQ 229
               D ++ +       +      +   L +G  A + +    YP++ ARTR+ A     
Sbjct: 87  FAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV--- 143

Query: 230 SGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWS 283
                    +   G+ N +       K    R L+ G    +   + + A  + 
Sbjct: 144 ---GKGAAQREFTGLGNCITKI---FKSDGLRGLYQGFNVSVQGIIIYRAAYFG 191


>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
Probab=100.00  E-value=1.9e-34  Score=258.73  Aligned_cols=209  Identities=18%  Similarity=0.265  Sum_probs=175.1

Q ss_pred             ccccccccCCcccccccccccCCCCCCCHHHHHHHHhHHHHHHHhhcchHHHHHHHHHhhcCCCCCCCCcccccccchhh
Q 022249           28 SSVTVSSETSSKEEALRHSEAINDFSLGFAERAFSAAGAAIVSAVIVNPLDVAKTRLQAQAAGVPYEGLCRTASFESNMM  107 (300)
Q Consensus        28 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~s~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~  107 (300)
                      ..+.++.|+..+..........++........+++|++|++++.++++|+|++|+|||++...                 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~-----------------  145 (292)
T d1okca_          83 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK-----------------  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-----------------
T ss_pred             cchhHHHHHHHHHHHhcccccccccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccc-----------------
Confidence            345556666666555544444444455677889999999999999999999999999998742                 


Q ss_pred             hhcccCCCCCCCCCCCCCCCCcccCCCcHHHHHHHHHhhhccchhccchhhhhhhhhccceeEhhhHHHHHHHHhcccCC
Q 022249          108 LSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTG  187 (300)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~f~~y~~~k~~l~~~~~~  187 (300)
                                         ....+.+.+..+.++.++++||+++||+|+.+++++.++..+++|.+||.+|+.+.+... 
T Consensus       146 -------------------~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-  205 (292)
T d1okca_         146 -------------------GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN-  205 (292)
T ss_dssp             -------------------STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC-
T ss_pred             -------------------cccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccccc-
Confidence                               222346789999999999999999999999999999999999999999999987755433 


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccCC-CCCCCCCHHHHHHHHhhcccccCcccccccHHHHhhh
Q 022249          188 NAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQ-SGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTG  266 (300)
Q Consensus       188 ~~~~~~~~~~~~ag~~ag~~~~~v~~P~dvvktr~q~~~~~~-~~~~y~~~~~~~~~i~~~~~~~~~~~~~~Gi~glyrG  266 (300)
                          ......+++|++++.+++++++|+||||+|||.+.... ....|+++++++++|+++|          |++|||||
T Consensus       206 ----~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~~~~~~y~~~~~~~~~i~~~e----------G~~~lyrG  271 (292)
T d1okca_         206 ----VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE----------GPKAFFKG  271 (292)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHH----------CGGGGGTT
T ss_pred             ----cchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhc----------CcCccccc
Confidence                34788999999999999999999999999999986433 2347899999999999999          99999999


Q ss_pred             hHHHHHhhhhhhhHHHHhHHHH
Q 022249          267 VGAQLARDVPFSAICWSTLEPV  288 (300)
Q Consensus       267 ~~~~~lr~~p~~~i~f~~ye~~  288 (300)
                      +.++++|.+| +++.|.+||.+
T Consensus       272 ~~~~~~r~i~-~~i~~~~ye~l  292 (292)
T d1okca_         272 AWSNVLRGMG-GAFVLVLYDEI  292 (292)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHTC
T ss_pred             HHHHHHHHHH-HHhhhhHhhcC
Confidence            9999999766 68999999974



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure