Citrus Sinensis ID: 022261

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MEGNSGGGGAGAGGSGGVTGGGAGGGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEcccccEEEEEEcccccEEEEEEccccHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEccccccccEEEEEEEccccccEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEEEEEEEEcEEEEEEEEEccccEEEEEEEEcccccEEEEEcHHHHHHHHHHHHHHcccccccccccEEEEcccEEEEEEccccccEEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccccEEEEEEEEEccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
megnsggggagaggsggvtgggagggggndVELVCKTLQVEHKLFyfdlkenprgrylkisektsatrstiivpssgiSWFLDLFNYyvnsddhelFSKELQLDSkvfyfdigenrrgrflkvseasvsrnrstiivpagssrdEGWAAFRNILAEINEASRllilpnqqgseqsehlvglsddvgagfisghgsqpapaselnvdrsvdlpaqdeignmgvSKVIRADQKrfffdlgsnnrghflrisevtgsdrssiilplsglkQFHEIVGHFVEITKDRiegmtgasvrivdppqr
Flexible Loop (DISEMBL)
MEGNSGGGGAGAGGSGGVTGGGAGGGGGNDVELVCKTLQVEHKLfyfdlkenprgrylkisektsatrstiivpssgISWFLDLFNYYVNSDDHELFSKELQLDSKVFYFdigenrrgrflkvseasvsrnrstiivpagssrdegWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFffdlgsnnrgHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDriegmtgasvrivdppqr
Low Complexity Region (SEG)
MEgnsggggagaggsggvtgggagggggNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR
Disordered region (IsUnstruct)
*******************************ELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEA******STIIVPAGSSRDEGWAAFRNILAEINEASRLLIL***************************************************GNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGA**********
Disordered Region (DISOPRED)
*************************************LQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEI******************************************************************KVIRADQKRFFFDLGSNNRGHFLRISEV*GSDRSSIILPLSGLKQFHEIVGHFV***********************
Disordered Region (DISEMBL)
************GGSGGVTGGGAGGGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGH*********LNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR
Disordered Region (DISPRO)
*****************************DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAG*******************************MGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDR*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGNSGGGGAGAGGSGGVTGGGAGGGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q9SKZ1	296	Transcription factor Pur-	yes	no	0.896	0.908	0.853	1e-132
Q6PHK6	297	Transcriptional activator	no	no	0.743	0.750	0.277	5e-15
Q00577	322	Transcriptional activator	no	no	0.646	0.602	0.263	1e-14
Q96QR8	312	Transcriptional activator	yes	no	0.713	0.685	0.265	4e-14
Q9UJV8	347	Purine-rich element-bindi	no	no	0.713	0.616	0.260	7e-14
Q8R4E6	350	Purine-rich element-bindi	yes	no	0.71	0.608	0.261	7e-14
Q6PAC9	323	Transcriptional activator	N/A	no	0.703	0.653	0.262	1e-13
Q68A21	315	Transcriptional activator	no	no	0.663	0.631	0.265	6e-13
Q8AVS4	328	Transcriptional activator	N/A	no	0.67	0.612	0.275	6e-13
O35295	324	Transcriptional activator	no	no	0.663	0.614	0.261	7e-13

>sp|Q9SKZ1|PUR_ARATH Transcription factor Pur-alpha 1 OS=Arabidopsis thaliana GN=PURA1 PE=1 SV=2

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/273 (85%), Positives = 250/273 (91%), Gaps = 4/273 (1%)

Query: 29  NDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 88
           +DVELV KTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY
Sbjct: 27  SDVELVSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 86

Query: 89  VNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWA 148
           VNS++HELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSS DEGWA
Sbjct: 87  VNSEEHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWA 146

Query: 149 AFRNILAEINEASRLLILPNQ-QGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDR 207
           AFRNILAEI+EAS L ++PNQ + S+  EHLV   DDVGAGFI GHGSQ   +SE NVDR
Sbjct: 147 AFRNILAEIHEASGLFVMPNQVKPSDGQEHLV---DDVGAGFIPGHGSQQPSSSEHNVDR 203

Query: 208 SVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLK 267
           ++D P Q+E G  GVSKVIRADQKRFFFDLG+NNRGHFLRISEV GSDRSSIILPLSGLK
Sbjct: 204 TIDSPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLK 263

Query: 268 QFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           QFHE++GHFVEITKD+IEGMTGA+VR VDPPQR
Sbjct: 264 QFHEVIGHFVEITKDKIEGMTGANVRTVDPPQR 296

Transcription factor that specifically binds the purine-rich double-stranded telomeric repeated sequence 5'-AAACCCTAA-3' found in promoter telo boxes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6PHK6|PURB_DANRE Transcriptional activator protein Pur-beta OS=Danio rerio GN=purb PE=2 SV=3

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 118/274 (43%), Gaps = 51/274 (18%)

Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISEK-TSATRSTIIVPSSGISWFLDLFNYYVN 90
           EL  K L +++K FY D+K+N +GR++KI+E     ++S + +  S  + F D    ++ 
Sbjct: 28  ELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMSVAAEFRDYLGDFIE 87

Query: 91  S------------------DD----HELFSKELQLDSKVFYFDIGENRRGRFLKVSEASV 128
                              DD      L S+ L  +++ +Y D+ EN+RGRFL++ + +V
Sbjct: 88  HYAQLGPSSPEQIAQSSGGDDGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQ-TV 146

Query: 129 SRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAG 188
           +R     +   G                  +A + + LP Q   E  + L  L DD G  
Sbjct: 147 NRGPGFGVGGGGGP------------GGGVQAGQTIALPAQGLIEFRDALAKLIDDYGGE 194

Query: 189 FISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRI 248
                  +             +LP        G S  I  D KRFFFD+GSN  G FLR+
Sbjct: 195 ------DEELSGGPGAAGGYGELPE-------GTS--IMVDSKRFFFDVGSNKYGVFLRV 239

Query: 249 SEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKD 282
           SEV  S R+SI +P     +F      + E  K+
Sbjct: 240 SEVKPSYRNSITIPFKAWGKFGGAFSRYAEEMKE 273

May bind repeated elements in single-stranded DNA and may participate in transcriptional and translational gene regulation.

Danio rerio (taxid: 7955)

>sp|Q00577|PURA_HUMAN Transcriptional activator protein Pur-alpha OS=Homo sapiens GN=PURA PE=1 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 83/277 (29%)

Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGIS-----WFLDLFN 86
           EL  K + +++K FY D+K+N +GR+LKI+E  +    + +  S  ++     +  D   
Sbjct: 60  ELASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIE 119

Query: 87  YYV--------------NSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSR-- 130
           +Y               +     L S+ L  +++ +Y D+ EN+RGRFL++ + +V+R  
Sbjct: 120 HYAQLGPSQPPDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQ-TVNRGP 178

Query: 131 -----NRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDV 185
                   TI +PA     +G   FR+ LA++                            
Sbjct: 179 GLGSTQGQTIALPA-----QGLIEFRDALAKL---------------------------- 205

Query: 186 GAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHF 245
               I  +G +  PA         +LP        G S  +  D KRFFFD+GSN  G F
Sbjct: 206 ----IDDYGVEEEPA---------ELPE-------GTSLTV--DNKRFFFDVGSNKYGVF 243

Query: 246 LRISEVTGSDRSSIILPLSGLKQF-HEIVGHFVEITK 281
           +R+SEV  + R+SI +P     +F H    +  E+ K
Sbjct: 244 MRVSEVKPTYRNSITVPYKVWAKFGHTFCKYSEEMKK 280

This is a probable transcription activator that specifically binds the purine-rich single strand of the PUR element located upstream of the MYC gene. May play a role in the initiation of DNA replication and in recombination.

Homo sapiens (taxid: 9606)

>sp|Q96QR8|PURB_HUMAN Transcriptional activator protein Pur-beta OS=Homo sapiens GN=PURB PE=1 SV=3

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 117/290 (40%), Gaps = 76/290 (26%)

Query: 17  GVTGGGAGGGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEK-TSATRSTIIVPS 75
           G      GGG     EL  K L +++K FY D+K+N +GR+LKI+E     ++S + +  
Sbjct: 18  GFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSM 77

Query: 76  SGISWFLDLFNYYVNS---------------------DDHELFSKELQLDSKVFYFDIGE 114
           +  + F D    ++                           L S+ L  +++ +Y D+ E
Sbjct: 78  AVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKE 137

Query: 115 NRRGRFLKVSEASVSRNR---------------STIIVPAGSSRDEGWAAFRNILAEINE 159
           N+RGRFL++ + +V+R                  TI +PA     +G   FR+ LA+   
Sbjct: 138 NQRGRFLRIRQ-TVNRGGGGFGAGPGPGGLQSGQTIALPA-----QGLIEFRDALAK--- 188

Query: 160 ASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGN 219
                 L +  G E  E   G     G      +G  P   S                  
Sbjct: 189 ------LIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTS------------------ 224

Query: 220 MGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQF 269
                 I  D KRFFFD+G N  G FLR+SEV  S R++I +P     +F
Sbjct: 225 ------ITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKF 268

Has capacity to bind repeated elements in single-stranded DNA such as the purine-rich single strand of the PUR element located upstream of the MYC gene. Plays a role in the control of vascular smooth muscle (VSM) alpha-actin gene transcription as repressor in myoblasts and fibroblasts. Participates in transcriptional and translational regulation of alpha-MHC expression in cardiac myocytes by binding to the purine-rich negative regulatory (PNR) element. Modulates constitutive liver galectin-3 gene transcription by binding to its promoter. May play a role in the dendritic transport of a subset of mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q9UJV8|PURG_HUMAN Purine-rich element-binding protein gamma OS=Homo sapiens GN=PURG PE=2 SV=1

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 82/296 (27%)

Query: 24  GGGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISE------KTSATRSTIIVPSSG 77
            GG     EL  K + ++ K FY D+K++ RGR+LKI+E      +    R + +  S  
Sbjct: 51  AGGAAEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLS 110

Query: 78  ISWFL-----DLFNYY----------------------------------VNSDDHE--- 95
           ++  L     D   +Y                                  V S++H    
Sbjct: 111 VAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSV 170

Query: 96  LFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILA 155
           L +  ++ D++ +Y D+ EN+RGRFL++ +  +   R T ++            F + L 
Sbjct: 171 LKTDYIERDNRKYYLDLKENQRGRFLRIRQTMM---RGTGMI----------GYFGHSLG 217

Query: 156 EINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQD 215
           +     + ++LP Q   E  + LV L +D G G I               D  ++LP   
Sbjct: 218 Q----EQTIVLPAQGMIEFRDALVQLIEDYGEGDIEERRG--------GDDDPLELPE-- 263

Query: 216 EIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHE 271
                G S   R D KRF+FD+GSN  G FL++SEV    R++I +P     +F E
Sbjct: 264 -----GTS--FRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTITVPFKAWTRFGE 312

Homo sapiens (taxid: 9606)

>sp|Q8R4E6|PURG_MOUSE Purine-rich element-binding protein gamma OS=Mus musculus GN=Purg PE=1 SV=1

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 124/295 (42%), Gaps = 82/295 (27%)

Query: 25  GGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISE------KTSATRSTIIVPSSGI 78
           GG     EL  K + ++ K FY D+K++ RGR+LKI+E      +    R + +  S  +
Sbjct: 55  GGTSEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSV 114

Query: 79  SWFL-----DLFNYY----------------------------------VNSDDHE---L 96
           +  L     D   +Y                                  V S++H    L
Sbjct: 115 AAELKDCLGDFIEHYAHLGLKGHRQEHGQSKEQVSRRRQKHSAPSPPVSVGSEEHPHSVL 174

Query: 97  FSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAE 156
            +  ++ D++ +Y D+ EN+RGRFL++ +  +   R T ++            F + L +
Sbjct: 175 KTDYIERDNRKYYLDLKENQRGRFLRIRQTMM---RGTGMI----------GYFGHSLGQ 221

Query: 157 INEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDE 216
                + ++LP Q   E  + LV L +D G G I               D  ++LP    
Sbjct: 222 ----DQTIVLPAQGMIEFRDALVQLIEDYGEGDIE--------ERRCGDDDPLELPE--- 266

Query: 217 IGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHE 271
               G S   R D KRF+FD+GSN  G FL++SEV    R++I +P     +F E
Sbjct: 267 ----GTS--FRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTITVPFKAWTRFGE 315

Mus musculus (taxid: 10090)

>sp|Q6PAC9|PURBA_XENLA Transcriptional activator protein Pur-beta-A OS=Xenopus laevis GN=purb-a PE=2 SV=3

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 118/293 (40%), Gaps = 82/293 (27%)

Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGIS-----WFLDLFN 86
           EL  K L +++K FY D+K+N +GR++KI+E  +    + +  S G++     +  D   
Sbjct: 32  ELATKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMGVAAEFRDYLGDFIE 91

Query: 87  YYVN----------------------SDDHELFSKELQLDSKVFYFDIGENRRGRFLKVS 124
           +Y                             L S+ L  +++ +Y D+ EN+RGRFL++ 
Sbjct: 92  HYAQLGPSSPEQIAQASGEDGAGGPGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIR 151

Query: 125 EASVSRNRS---------------TIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQ 169
           + +++R                  TI +PA     +G   FR+ LA+             
Sbjct: 152 Q-TINRGPGFSGGAGGGAGLQSGQTIALPA-----QGLIEFRDALAK------------- 192

Query: 170 QGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRAD 229
                      L DD G G                     +LP        G S  I  D
Sbjct: 193 -----------LIDDYG-GEDDEGVGLGGAGGGGGGGMYGELPE-------GTS--ITVD 231

Query: 230 QKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKD 282
            KRFFFD+GSN  G FLR+SEV  S R+SI +PL    +F      + E  K+
Sbjct: 232 SKRFFFDVGSNKYGVFLRVSEVKPSYRNSITVPLKAWGKFGGAFCRYSEEMKE 284

May bind repeated elements in single-stranded DNA and may participate in transcriptional and translational gene regulation.

Xenopus laevis (taxid: 8355)

>sp|Q68A21|PURB_RAT Transcriptional activator protein Pur-beta OS=Rattus norvegicus GN=Purb PE=1 SV=3

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 113/275 (41%), Gaps = 76/275 (27%)

Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISEK-TSATRSTIIVPSSGISWFLDLFNYYVN 90
           EL  K L +++K FY D+K+N +GR+LKI+E     ++S + +  +  + F D    ++ 
Sbjct: 36  ELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIE 95

Query: 91  S---------------------DDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVS 129
                                     L S+ L  +++ +Y D+ EN+RGRFL++ + +V+
Sbjct: 96  HYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQ-TVN 154

Query: 130 RNR---------------STIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQ 174
           R                  TI +PA     +G   FR+ LA+         L +  G E 
Sbjct: 155 RGGGGFGGGPGPGGLQSGQTIALPA-----QGLIEFRDALAK---------LIDDYGGED 200

Query: 175 SEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFF 234
            E   G     G      +G  P   S                        I  D KRFF
Sbjct: 201 DELAGGPGGGAGGPGGGLYGELPEGTS------------------------ITVDSKRFF 236

Query: 235 FDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQF 269
           FD+G N  G FLR+SEV  S R++I +P     +F
Sbjct: 237 FDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKF 271

Has capacity to bind repeated elements in single-stranded DNA such as the purine-rich single strand of the PUR element located upstream of the MYC gene. Plays a role in the control of vascular smooth muscle (VSM) alpha-actin gene transcription as repressor in myoblasts and fibroblasts (By similarity). Participates in transcriptional and translational regulation of alpha-MHC expression in cardiac myocytes by binding to the purine-rich negative regulatory (PNR) element. Modulates constitutive liver galectin-3 gene transcription by binding to its promoter. May play a role in the dendritic transport of a subset of mRNAs.

Rattus norvegicus (taxid: 10116)

>sp|Q8AVS4|PURBB_XENLA Transcriptional activator protein Pur-beta-B OS=Xenopus laevis GN=purb-b PE=2 SV=3

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 115/280 (41%), Gaps = 79/280 (28%)

Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISE-----KTSATRSTIIVPSSGISWFLDLFN 86
           EL  K L +++K FY D+K+N +GR++KI+E       S    ++ V +    +  D   
Sbjct: 32  ELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMAVAAEFRDYLGDFIE 91

Query: 87  YYVN----------------------SDDHELFSKELQLDSKVFYFDIGENRRGRFLKVS 124
           +Y                             L S+ L  +++ +Y D+ EN+RGRFL++ 
Sbjct: 92  HYAQLGPSSPEQIAQASGEDGAGGPGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIR 151

Query: 125 EASVSRNR---------------STIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQ 169
           + +++R                  TI +PA     +G   FR+ LA+         L + 
Sbjct: 152 Q-TINRGPGFSGGTGGGPGLQSGQTIALPA-----QGLIEFRDALAK---------LIDD 196

Query: 170 QGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRAD 229
            G E  E +   S   G G   G      P                     G S  I  D
Sbjct: 197 YGGEDDEGMGLGSGASGGGAGGGGMYGELPE--------------------GTS--ITVD 234

Query: 230 QKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQF 269
            KRFFFD+GSN  G FLR+SEV  S R+SI +PL    +F
Sbjct: 235 SKRFFFDVGSNKYGVFLRVSEVKPSYRNSITVPLKAWGKF 274

May bind repeated elements in single-stranded DNA and may participate in transcriptional and translational gene regulation.

Xenopus laevis (taxid: 8355)

>sp|O35295|PURB_MOUSE Transcriptional activator protein Pur-beta OS=Mus musculus GN=Purb PE=1 SV=3

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 76/275 (27%)

Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISEK-TSATRSTIIVPSSGISWFLDLFNYYVN 90
           EL  K L +++K FY D+K+N +GR+LKI+E     ++S + +  +  + F D    ++ 
Sbjct: 45  ELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIE 104

Query: 91  S---------------------DDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVS 129
                                     L S+ L  +++ +Y D+ EN+RGRFL++ + +V+
Sbjct: 105 HYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQ-TVN 163

Query: 130 RNR---------------STIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQ 174
           R                  TI +PA     +G   FR+ LA+         L +  G ++
Sbjct: 164 RGGGGFGGGPGPGGLQSGQTIALPA-----QGLIEFRDALAK---------LIDDYGGDE 209

Query: 175 SEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFF 234
            E   G     G      +G  P   S                        I  D KRFF
Sbjct: 210 DELAGGPGGGAGGPGGGLYGELPEGTS------------------------ITVDSKRFF 245

Query: 235 FDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQF 269
           FD+G N  G FLR+SEV  S R++I +P     +F
Sbjct: 246 FDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKF 280

Has capacity to bind repeated elements in single-stranded DNA such as the purine-rich single strand of the PUR element located upstream of the MYC gene. Participates in transcriptional and translational regulation of alpha-MHC expression in cardiac myocytes by binding to the purine-rich negative regulatory (PNR) element. Modulates constitutive liver galectin-3 gene transcription by binding to its promoter. May play a role in the dendritic transport of a subset of mRNAs (By similarity). Plays a role in the control of vascular smooth muscle (VSM) alpha-actin gene transcription as repressor in myoblasts and fibroblasts.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
225435836	279	PREDICTED: transcription factor Pur-alph	0.923	0.992	0.916	1e-146
359807554	286	uncharacterized protein LOC100782805 [Gl	0.906	0.951	0.926	1e-145
356521624	283	PREDICTED: transcription factor Pur-alph	0.903	0.957	0.926	1e-144
357475063	293	Transcription factor Pur-alpha [Medicago	0.896	0.918	0.911	1e-141
147774370	291	hypothetical protein VITISV_041199 [Viti	0.9	0.927	0.875	1e-138
224075952	269	predicted protein [Populus trichocarpa]	0.89	0.992	0.903	1e-138
449452640	309	PREDICTED: transcription factor Pur-alph	0.906	0.880	0.856	1e-134
224056917	317	predicted protein [Populus trichocarpa]	0.903	0.854	0.829	1e-134
255564778	282	nucleic acid binding protein, putative [	0.843	0.897	0.874	1e-132
30685174	295	transcription factor Pur-alpha 1 [Arabid	0.896	0.911	0.856	1e-131

>gi|225435836|ref|XP_002283799.1| PREDICTED: transcription factor Pur-alpha 1-like [Vitis vinifera]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/277 (91%), Positives = 266/277 (96%)

Query: 24  GGGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLD 83
           G  GGNDVEL+CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLD
Sbjct: 3   GNSGGNDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLD 62

Query: 84  LFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSR 143
           LFNYYVNSD+ ++FSKELQLD+KVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGS+R
Sbjct: 63  LFNYYVNSDEQDVFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSTR 122

Query: 144 DEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASEL 203
           DEGWAAFRNILAEINEASRL ILPNQQ SE SE LVGLSDDVGAGFISGH +QPAPASEL
Sbjct: 123 DEGWAAFRNILAEINEASRLFILPNQQSSEPSERLVGLSDDVGAGFISGHSTQPAPASEL 182

Query: 204 NVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPL 263
           NV+RSV+LPAQDEIGN+GVSKVIRADQKRFFFDLGSNNRGHFLRISEV GSDRSSIILPL
Sbjct: 183 NVERSVELPAQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPL 242

Query: 264 SGLKQFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           SGLKQFHE+VGHFVEITKDRIEGMTGA+VR VDPPQR
Sbjct: 243 SGLKQFHEMVGHFVEITKDRIEGMTGANVRTVDPPQR 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807554|ref|NP_001241408.1| uncharacterized protein LOC100782805 [Glycine max] gi|255640975|gb|ACU20767.1| unknown [Glycine max]

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/272 (92%), Positives = 260/272 (95%)

Query: 29  NDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 88
           NDVEL+CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLDLFNYY
Sbjct: 15  NDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYY 74

Query: 89  VNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWA 148
           VNSDD +LFSKELQLD+KVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWA
Sbjct: 75  VNSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWA 134

Query: 149 AFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRS 208
           AFRNILAEINEASRL ILPNQQ SE SEHLVGLSDDVGAGFISGH +QPA +SELNVDRS
Sbjct: 135 AFRNILAEINEASRLFILPNQQNSESSEHLVGLSDDVGAGFISGHSTQPATSSELNVDRS 194

Query: 209 VDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQ 268
           VDLP QDEIGN+GVSKVIRADQKRFFFDLGSNNRGHFLRISEV GSDRSSIILPLSGLKQ
Sbjct: 195 VDLPPQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQ 254

Query: 269 FHEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           FHEIVGHFVEITKDRIEGM  A+VR +DPPQR
Sbjct: 255 FHEIVGHFVEITKDRIEGMAVANVRTIDPPQR 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521624|ref|XP_003529454.1| PREDICTED: transcription factor Pur-alpha 1 isoform 1 [Glycine max]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/271 (92%), Positives = 259/271 (95%)

Query: 30  DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 89
           DVEL+CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLDLFNYYV
Sbjct: 13  DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 72

Query: 90  NSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 149
           NSDD +LFSKELQLD+KVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA
Sbjct: 73  NSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 132

Query: 150 FRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSV 209
           FRN+LAEINEASRL ILPNQQ SE SE LVGLSDDVGAGFISGH +QPA +SELNVDRSV
Sbjct: 133 FRNVLAEINEASRLFILPNQQNSESSERLVGLSDDVGAGFISGHSTQPATSSELNVDRSV 192

Query: 210 DLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQF 269
           DLP QDEIGN+GVSKVIRADQKRFFFDLGSNNRGHFLRISEV GSDRSSIILPLSGLKQF
Sbjct: 193 DLPPQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQF 252

Query: 270 HEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           HEIVGHFVEITKDRIEGMT A+VR VDPPQR
Sbjct: 253 HEIVGHFVEITKDRIEGMTVANVRTVDPPQR 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475063|ref|XP_003607817.1| Transcription factor Pur-alpha [Medicago truncatula] gi|355508872|gb|AES90014.1| Transcription factor Pur-alpha [Medicago truncatula]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/271 (91%), Positives = 258/271 (95%), Gaps = 2/271 (0%)

Query: 30  DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 89
           DVEL+CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLDLFNYYV
Sbjct: 25  DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 84

Query: 90  NSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 149
           NS+D ELFSKELQLD+KVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA
Sbjct: 85  NSEDQELFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 144

Query: 150 FRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSV 209
           FRNILAEINEASRL +LPNQQ SE SE L  LSDDVGAGFISGH +QPA +SELNVDRSV
Sbjct: 145 FRNILAEINEASRLFLLPNQQNSESSERL--LSDDVGAGFISGHNTQPATSSELNVDRSV 202

Query: 210 DLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQF 269
           DLPAQDEIGN+GVSKVIRADQKRFFFDLG+NNRGHFLRISEV GSDRSSIILPLSGLKQF
Sbjct: 203 DLPAQDEIGNLGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQF 262

Query: 270 HEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           HEIVGHFVEITKDRIEGM+ A+VR +DPPQR
Sbjct: 263 HEIVGHFVEITKDRIEGMSVANVRTIDPPQR 293

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774370|emb|CAN72395.1| hypothetical protein VITISV_041199 [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/281 (87%), Positives = 256/281 (91%), Gaps = 11/281 (3%)

Query: 20  GGGAGGGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGIS 79
           G   G  GGNDVEL+CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGIS
Sbjct: 22  GQMEGNSGGNDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGIS 81

Query: 80  WFLDLFNYYVNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPA 139
           WFLDLFNYYVNSD+ +           VFYFDIGENRRGRFLKVSEASVSRNRSTIIVPA
Sbjct: 82  WFLDLFNYYVNSDEQD-----------VFYFDIGENRRGRFLKVSEASVSRNRSTIIVPA 130

Query: 140 GSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAP 199
           GS+RDEGWAAFRNILAEINEASRL ILPNQQ SE SE LVGLSDDVGAGFISGH +QPAP
Sbjct: 131 GSTRDEGWAAFRNILAEINEASRLFILPNQQSSEPSERLVGLSDDVGAGFISGHSTQPAP 190

Query: 200 ASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSI 259
           ASELNV+RSV+LPAQDEIGN+GVSKVIRADQKRFFFDLGSNNRGHFLRISEV GSDRSSI
Sbjct: 191 ASELNVERSVELPAQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSI 250

Query: 260 ILPLSGLKQFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           ILPLSGLKQFHE+VGHFVEITKDRIEGMTGA+VR VDPPQR
Sbjct: 251 ILPLSGLKQFHEMVGHFVEITKDRIEGMTGANVRTVDPPQR 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075952|ref|XP_002304844.1| predicted protein [Populus trichocarpa] gi|222842276|gb|EEE79823.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/269 (90%), Positives = 251/269 (93%), Gaps = 2/269 (0%)

Query: 34  VCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVN--S 91
           +CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLDLFNYYVN  +
Sbjct: 1   MCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYVNNSA 60

Query: 92  DDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFR 151
           DD +LFSKELQLD+KVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFR
Sbjct: 61  DDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFR 120

Query: 152 NILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDL 211
           NILAEINEASRL +LPNQQ SE SE LVGLSDDVGAGFISGH SQ    SELNVDRSV+L
Sbjct: 121 NILAEINEASRLFMLPNQQSSETSERLVGLSDDVGAGFISGHSSQSVTTSELNVDRSVEL 180

Query: 212 PAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQFHE 271
           P QDEIGNM VSKVIR DQKRFFFDLGSNNRGHFLRISEV G+DRSSIILPLSGLKQFHE
Sbjct: 181 PPQDEIGNMAVSKVIRVDQKRFFFDLGSNNRGHFLRISEVAGNDRSSIILPLSGLKQFHE 240

Query: 272 IVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           IVGHFVEITKDRIEGMTGA+VR VDPPQR
Sbjct: 241 IVGHFVEITKDRIEGMTGANVRTVDPPQR 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452640|ref|XP_004144067.1| PREDICTED: transcription factor Pur-alpha 1-like [Cucumis sativus]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/278 (85%), Positives = 252/278 (90%), Gaps = 6/278 (2%)

Query: 29  NDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 88
           NDVEL+CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGI WFLDLFNYY
Sbjct: 32  NDVELMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGIPWFLDLFNYY 91

Query: 89  VNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWA 148
           +NSDD E+FSKELQLD+KVFYFDIGENRRGRFLKV+  S SRNRSTIIVPAGS+RDEGW+
Sbjct: 92  INSDDPEVFSKELQLDTKVFYFDIGENRRGRFLKVNCFSFSRNRSTIIVPAGSNRDEGWS 151

Query: 149 AFRNILA------EINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASE 202
           AFRNILA      EINEASRL ILPNQ+ SE SE L GLSDDVGAGFISGH SQ  P S+
Sbjct: 152 AFRNILAFRNILAEINEASRLFILPNQENSEHSERLAGLSDDVGAGFISGHSSQSGPTSD 211

Query: 203 LNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILP 262
           LNVDR VDL AQDE+GN+GVSKVIRADQKRFFFDLGSNNRGHFLRISEV G+DRSSIILP
Sbjct: 212 LNVDRQVDLSAQDEMGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGADRSSIILP 271

Query: 263 LSGLKQFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           LSGLKQF+EIVGHFVEITKDRIEGMTG +VR VDPPQR
Sbjct: 272 LSGLKQFYEIVGHFVEITKDRIEGMTGVNVRTVDPPQR 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056917|ref|XP_002299088.1| predicted protein [Populus trichocarpa] gi|222846346|gb|EEE83893.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/294 (82%), Positives = 258/294 (87%), Gaps = 23/294 (7%)

Query: 30  DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 89
           DVEL+CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLDLFN+YV
Sbjct: 24  DVELMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNHYV 83

Query: 90  N--SDDHELFSKELQLDSK-------------------VFYFDIGENRRGRFLKVSEASV 128
           +  +DD +LFSKELQLD+K                   VFYFDIGENRRGRFLKVSEASV
Sbjct: 84  DNSADDQDLFSKELQLDTKAFFLIPTPSLLPLSLITNSVFYFDIGENRRGRFLKVSEASV 143

Query: 129 SRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQ-QGSEQSEHLVGLSDDVGA 187
           SRNRSTII+PAGSSRDEGWAAFRNILAEINEASRL +LPNQ   SE SE LVGLSDDVGA
Sbjct: 144 SRNRSTIIIPAGSSRDEGWAAFRNILAEINEASRLFLLPNQVTCSETSEQLVGLSDDVGA 203

Query: 188 GFISGHGSQ-PAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFL 246
           GFISGH SQ PAP SELNVDRSVDLP QDEIGN+GVSKVIR DQKRFFFDLGSNNRGHFL
Sbjct: 204 GFISGHSSQSPAPTSELNVDRSVDLPPQDEIGNLGVSKVIRVDQKRFFFDLGSNNRGHFL 263

Query: 247 RISEVTGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           RISEV G+DRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGA++R +DPP+R
Sbjct: 264 RISEVAGNDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMTGANIRTIDPPRR 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564778|ref|XP_002523383.1| nucleic acid binding protein, putative [Ricinus communis] gi|223537333|gb|EEF38962.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/271 (87%), Positives = 244/271 (90%), Gaps = 18/271 (6%)

Query: 30  DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 89
           DVEL+CKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLDLFNYYV
Sbjct: 30  DVELMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 89

Query: 90  NSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 149
                             FYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGS+RDEGWAA
Sbjct: 90  ------------------FYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSTRDEGWAA 131

Query: 150 FRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSV 209
           FRNILAEINE SRL ILPNQQ SE SE LVGLSDDVGAGFISGH +QPAPASELNVDRSV
Sbjct: 132 FRNILAEINETSRLFILPNQQNSEPSERLVGLSDDVGAGFISGHSNQPAPASELNVDRSV 191

Query: 210 DLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQF 269
           +LPAQ++IGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEV GSDRSSIILPLSGLKQF
Sbjct: 192 ELPAQEDIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQF 251

Query: 270 HEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           HEIVGHFVEITKDRIEGMTGA+VR VDPPQR
Sbjct: 252 HEIVGHFVEITKDRIEGMTGANVRTVDPPQR 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685174|ref|NP_850182.1| transcription factor Pur-alpha 1 [Arabidopsis thaliana] gi|16930405|gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] gi|330253538|gb|AEC08632.1| transcription factor Pur-alpha 1 [Arabidopsis thaliana]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/272 (85%), Positives = 250/272 (91%), Gaps = 3/272 (1%)

Query: 29  NDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 88
           +DVELV KTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY
Sbjct: 27  SDVELVSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 86

Query: 89  VNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWA 148
           VNS++HELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSS DEGWA
Sbjct: 87  VNSEEHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWA 146

Query: 149 AFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRS 208
           AFRNILAEI+EAS L ++PNQ+ S+  EHLV   DDVGAGFI GHGSQ   +SE NVDR+
Sbjct: 147 AFRNILAEIHEASGLFVMPNQKPSDGQEHLV---DDVGAGFIPGHGSQQPSSSEHNVDRT 203

Query: 209 VDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQ 268
           +D P Q+E G  GVSKVIRADQKRFFFDLG+NNRGHFLRISEV GSDRSSIILPLSGLKQ
Sbjct: 204 IDSPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQ 263

Query: 269 FHEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
           FHE++GHFVEITKD+IEGMTGA+VR VDPPQR
Sbjct: 264 FHEVIGHFVEITKDKIEGMTGANVRTVDPPQR 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2045497	296	PUR ALPHA-1 "AT2G32080" [Arabi	0.896	0.908	0.853	4.1e-120
FB|FBgn0022361	275	Pur-alpha "Purine-rich binding	0.406	0.443	0.361	1e-21
WB|WBGene00004046	226	plp-1 [Caenorhabditis elegans	0.363	0.482	0.338	4e-10
UNIPROTKB|Q9MYX6	321	Q9MYX6 "DNA binding protein pu	0.376	0.352	0.333	1e-08
UNIPROTKB|Q96QR8	312	PURB "Transcriptional activato	0.173	0.166	0.442	9.3e-14
ZFIN|ZDB-GENE-040624-8	287	pura "purine-rich element bind	0.453	0.473	0.306	5.4e-09
MGI|MGI:103079	321	Pura "purine rich element bind	0.376	0.352	0.333	1e-08
UNIPROTKB|E1BMW9	322	PURA "Uncharacterized protein"	0.376	0.350	0.333	1e-08
UNIPROTKB|Q00577	322	PURA "Transcriptional activato	0.376	0.350	0.333	1e-08
UNIPROTKB|I3LCN6	322	PURA "Uncharacterized protein"	0.376	0.350	0.333	1e-08

TAIR|locus:2045497 PUR ALPHA-1 "AT2G32080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 233/273 (85%), Positives = 250/273 (91%)

Query:    29 NDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 88
             +DVELV KTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY
Sbjct:    27 SDVELVSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYY 86

Query:    89 VNSDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWA 148
             VNS++HELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSS DEGWA
Sbjct:    87 VNSEEHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWA 146

Query:   149 AFRNILAEINEASRLLILPNQ-QGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDR 207
             AFRNILAEI+EAS L ++PNQ + S+  EHLV   DDVGAGFI GHGSQ   +SE NVDR
Sbjct:   147 AFRNILAEIHEASGLFVMPNQVKPSDGQEHLV---DDVGAGFIPGHGSQQPSSSEHNVDR 203

Query:   208 SVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLK 267
             ++D P Q+E G  GVSKVIRADQKRFFFDLG+NNRGHFLRISEV GSDRSSIILPLSGLK
Sbjct:   204 TIDSPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLK 263

Query:   268 QFHEIVGHFVEITKDRIEGMTGASVRIVDPPQR 300
             QFHE++GHFVEITKD+IEGMTGA+VR VDPPQR
Sbjct:   264 QFHEVIGHFVEITKDKIEGMTGANVRTVDPPQR 296

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

FB|FBgn0022361 Pur-alpha "Purine-rich binding protein-alpha" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 52/144 (36%), Positives = 80/144 (55%)

Query:    32 ELVCKTLQVEHKLFYFDLKENPRGRYLKISE-KTSATRSTIIVPSSGISWFLD----LFN 86
             EL  K LQ++ K FY D+K+N RGR++K++E      RS I +  S  + F D      +
Sbjct:    43 ELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSD 102

Query:    87 YYV-----NSD----DHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRN--RSTI 135
             YY      N+D    D +L S+ +  D + +Y D+ EN RGRFL+VS+ +++R   RS I
Sbjct:   103 YYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQ-TITRGGPRSQI 161

Query:   136 IVPAGSSRDEGWAAFRNILAEINE 159
              +PA     +G   FR+ L ++ E
Sbjct:   162 ALPA-----QGMIEFRDALTDLLE 180

GO:0003697 "single-stranded DNA binding" evidence=NAS

GO:0003677 "DNA binding" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0031935 "regulation of chromatin silencing" evidence=IMP

WB|WBGene00004046 plp-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 40/118 (33%), Positives = 65/118 (55%)

Query:    36 KTLQVEHKLFYFDLKENPRGRYLKISE---KTSATRSTIIVPSSGISWFLDLFNYYVNS- 91
             +TL V+ + FY DLKEN RGR+L+I++       TR  I +PS GI+    +   Y+   
Sbjct:    95 ETLNVDGRKFYVDLKENVRGRFLRIAQMPMNPRQTRQQIAIPSDGIAEIHKVLTEYLAKF 154

Query:    92 -DDHE---LFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRN-RSTIIVPAGSSRD 144
              + HE     + ++  ++K F F  G+N RG F+++SE  ++   R+ I VP  +  D
Sbjct:   155 GEGHEQENTNTPKITAENKSFLFHSGKNDRGEFVRISEIKLNSGYRNAITVPMSALVD 212

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0043186 "P granule" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0003691 "double-stranded telomeric DNA binding" evidence=IDA

UNIPROTKB|Q9MYX6 Q9MYX6 "DNA binding protein pur-alpha" [Ovis aries (taxid:9940)]

 Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 44/132 (33%), Positives = 72/132 (54%)

Query:    41 EHKLFYFDLKENPRGRYLKISEKTS------ATRS-TIIVPSSGISWFLDLF-----NYY 88
             E++ +Y DLKEN RGR+L+I +  +      +T+  TI +P+ G+  F D       +Y 
Sbjct:   150 ENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYG 209

Query:    89 VNSDDHEL-FSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGW 147
             V  +  EL     L +D+K F+FD+G N+ G F++VSE   +  R++I VP      + W
Sbjct:   210 VEEEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTY-RNSITVPY-----KVW 263

Query:   148 AAFRNILAEINE 159
             A F +   + +E
Sbjct:   264 AKFGHTFCKYSE 275

GO:0003690 "double-stranded DNA binding" evidence=ISS

GO:0003691 "double-stranded telomeric DNA binding" evidence=ISS

GO:0003697 "single-stranded DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007399 "nervous system development" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0046332 "SMAD binding" evidence=ISS

UNIPROTKB|Q96QR8 PURB "Transcriptional activator protein Pur-beta" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 9.3e-14, Sum P(3) = 9.3e-14
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query:   218 GNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSDRSSIILPLSGLKQF 269
             G +     I  D KRFFFD+G N  G FLR+SEV  S R++I +P     +F
Sbjct:   217 GELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKF 268

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0045637 "regulation of myeloid cell differentiation" evidence=NAS

GO:0003697 "single-stranded DNA binding" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-040624-8 pura "purine-rich element binding protein A" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 46/150 (30%), Positives = 75/150 (50%)

Query:    41 EHKLFYFDLKENPRGRYLKISEKTS------ATRS-TIIVPSSGISWFLDLF-----NYY 88
             E++ +Y DLKEN RGR+L+I +  +      +T+  TI +P+ G+  F D       +Y 
Sbjct:   129 ENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYG 188

Query:    89 VNSDDHEL-FSKELQLDSKVFYFDIGENRRGRFLKVSEASVS-RNRSTIIVPAGSSRDEG 146
             V  +  EL     L +D+K F+FD+G N+ G F++VSE   + RN  T+     S     
Sbjct:   189 VEDEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWSKFGST 248

Query:   147 WAAFRNILAEINEASRLLILPNQQGSEQSE 176
             +  + + + +I E  R       Q  +Q E
Sbjct:   249 FCKYADEMKKIQEKQREKRACELQQQQQEE 278

GO:0003690 "double-stranded DNA binding" evidence=IDA

MGI|MGI:103079 Pura "purine rich element binding protein A" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 44/132 (33%), Positives = 72/132 (54%)

Query:    41 EHKLFYFDLKENPRGRYLKISEKTS------ATRS-TIIVPSSGISWFLDLF-----NYY 88
             E++ +Y DLKEN RGR+L+I +  +      +T+  TI +P+ G+  F D       +Y 
Sbjct:   150 ENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYG 209

Query:    89 VNSDDHEL-FSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGW 147
             V  +  EL     L +D+K F+FD+G N+ G F++VSE   +  R++I VP      + W
Sbjct:   210 VEEEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTY-RNSITVPY-----KVW 263

Query:   148 AAFRNILAEINE 159
             A F +   + +E
Sbjct:   264 AKFGHTFCKYSE 275

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003691 "double-stranded telomeric DNA binding" evidence=ISO

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005662 "DNA replication factor A complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006268 "DNA unwinding involved in replication" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=NAS

GO:0007093 "mitotic cell cycle checkpoint" evidence=NAS

GO:0007399 "nervous system development" evidence=IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008283 "cell proliferation" evidence=NAS

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=IDA

GO:0030154 "cell differentiation" evidence=NAS

GO:0030425 "dendrite" evidence=IDA

GO:0032422 "purine-rich negative regulatory element binding" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0046332 "SMAD binding" evidence=IDA

UNIPROTKB|E1BMW9 PURA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 44/132 (33%), Positives = 72/132 (54%)

Query:    41 EHKLFYFDLKENPRGRYLKISEKTS------ATRS-TIIVPSSGISWFLDLF-----NYY 88
             E++ +Y DLKEN RGR+L+I +  +      +T+  TI +P+ G+  F D       +Y 
Sbjct:   151 ENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYG 210

Query:    89 VNSDDHEL-FSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGW 147
             V  +  EL     L +D+K F+FD+G N+ G F++VSE   +  R++I VP      + W
Sbjct:   211 VEEEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTY-RNSITVPY-----KVW 264

Query:   148 AAFRNILAEINE 159
             A F +   + +E
Sbjct:   265 AKFGHTFCKYSE 276

GO:0046332 "SMAD binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0032422 "purine-rich negative regulatory element binding" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IEA

UNIPROTKB|Q00577 PURA "Transcriptional activator protein Pur-alpha" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 44/132 (33%), Positives = 72/132 (54%)

Query:    41 EHKLFYFDLKENPRGRYLKISEKTS------ATRS-TIIVPSSGISWFLDLF-----NYY 88
             E++ +Y DLKEN RGR+L+I +  +      +T+  TI +P+ G+  F D       +Y 
Sbjct:   151 ENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYG 210

Query:    89 VNSDDHEL-FSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGW 147
             V  +  EL     L +D+K F+FD+G N+ G F++VSE   +  R++I VP      + W
Sbjct:   211 VEEEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTY-RNSITVPY-----KVW 264

Query:   148 AAFRNILAEINE 159
             A F +   + +E
Sbjct:   265 AKFGHTFCKYSE 276

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0032422 "purine-rich negative regulatory element binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0003691 "double-stranded telomeric DNA binding" evidence=IDA

GO:0006268 "DNA unwinding involved in replication" evidence=IDA

GO:0000784 "nuclear chromosome, telomeric region" evidence=IC

GO:0003697 "single-stranded DNA binding" evidence=ISS

GO:0005662 "DNA replication factor A complex" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006270 "DNA replication initiation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3LCN6 PURA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 44/132 (33%), Positives = 72/132 (54%)

Query:    41 EHKLFYFDLKENPRGRYLKISEKTS------ATRS-TIIVPSSGISWFLDLF-----NYY 88
             E++ +Y DLKEN RGR+L+I +  +      +T+  TI +P+ G+  F D       +Y 
Sbjct:   151 ENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSTQGQTIALPAQGLIEFRDALAKLIDDYG 210

Query:    89 VNSDDHEL-FSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGW 147
             V  +  EL     L +D+K F+FD+G N+ G F++VSE   +  R++I VP      + W
Sbjct:   211 VEEEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTY-RNSITVPY-----KVW 264

Query:   148 AAFRNILAEINE 159
             A F +   + +E
Sbjct:   265 AKFGHTFCKYSE 276

GO:0046332 "SMAD binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0032422 "purine-rich negative regulatory element binding" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005662 "DNA replication factor A complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKZ1	PUR_ARATH	No assigned EC number	0.8534	0.8966	0.9087	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam04845	218	pfam04845, PurA, PurA ssDNA and RNA-binding protei	5e-31
smart00712	63	smart00712, PUR, DNA/RNA-binding repeats in PUR-al	7e-22
smart00712	63	smart00712, PUR, DNA/RNA-binding repeats in PUR-al	1e-20
smart00712	63	smart00712, PUR, DNA/RNA-binding repeats in PUR-al	2e-19
pfam04845	218	pfam04845, PurA, PurA ssDNA and RNA-binding protei	1e-07

>gnl|CDD|218289 pfam04845, PurA, PurA ssDNA and RNA-binding protein

 Score =  115 bits (289), Expect = 5e-31
 Identities = 75/266 (28%), Positives = 116/266 (43%), Gaps = 71/266 (26%)

Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISE-KTSATRSTIIVPSSGISWFLD----LFN 86
           EL  K L +++K FY D+K+N RGR++KI+E      +S I +  S  + F D       
Sbjct: 3   ELASKRLDIQNKRFYLDVKQNARGRFIKIAEVGAGGRKSRITLSMSVAAEFRDYLSKFIE 62

Query: 87  YY-----VNSDDHE------LFSKELQLDSKVFYFDIGENRRGRFLKVSEASV---SRNR 132
           +Y      N +         L S+ L  D++ +Y D+ EN+RGRFL++++  +   S  R
Sbjct: 63  HYAQLGPQNGEHLPEDGRSALKSEFLVRDNRKYYLDLKENQRGRFLRIAQTVMRGGSGQR 122

Query: 133 STIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISG 192
             I +PA     +G   FR+ L +                        L +D G G    
Sbjct: 123 QQIALPA-----QGMIEFRDALTD------------------------LIEDYGEGDEED 153

Query: 193 HGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVT 252
             +              +LP             +  D KRF+FD+GSN RG F+RISEV 
Sbjct: 154 EPA--------------ELPE---------GTSLTVDNKRFYFDVGSNKRGVFMRISEVK 190

Query: 253 GSDRSSIILPLSGLKQFHEIVGHFVE 278
            + R+SI +P     +F +I   + E
Sbjct: 191 PNYRNSITVPEKAWTRFRDIFCKYSE 216

This family represents most of the length of the protein. Length = 218

>gnl|CDD|197840 smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

 Score = 86.5 bits (215), Expect = 7e-22
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 5/65 (7%)

Query: 95  ELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNIL 154
           EL SK+L +++K FYFD+ ENRRGRFL++SE   +  RS+I VP      +G A FR+ L
Sbjct: 1   ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGGRSSITVPE-----QGAAEFRDAL 55

Query: 155 AEINE 159
            ++ E
Sbjct: 56  TKLIE 60

Length = 63

>gnl|CDD|197840 smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

 Score = 83.0 bits (206), Expect = 1e-20
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 32 ELVCKTLQVEHKLFYFDLKENPRGRYLKISE-KTSATRSTIIVPSSGISWFLDLFNYYVN 90
          EL  K L VE+K FYFD+KEN RGR+L+ISE K +  RS+I VP  G + F D     + 
Sbjct: 1  ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGGRSSITVPEQGAAEFRDALTKLIE 60

Length = 63

>gnl|CDD|197840 smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 222 VSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSD-RSSIILPLSGLKQFHEIVGHFVEIT 280
            SK +  + KRF+FD+  N RG FLRISEV  +  RSSI +P  G  +F + +   +E  
Sbjct: 3   ASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGGRSSITVPEQGAAEFRDALTKLIEKY 62

Query: 281 K 281
            
Sbjct: 63  G 63

Length = 63

>gnl|CDD|218289 pfam04845, PurA, PurA ssDNA and RNA-binding protein

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 24  GGGGGNDVELVC---KTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISW 80
           G G   D         +L V++K FYFD+  N RG +++ISE     R++I VP    + 
Sbjct: 147 GEGDEEDEPAELPEGTSLTVDNKRFYFDVGSNKRGVFMRISEVKPNYRNSITVPEKAWTR 206

Query: 81  FLDLFNYYVN 90
           F D+F  Y  
Sbjct: 207 FRDIFCKYSE 216

This family represents most of the length of the protein. Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG3074	263	consensus Transcriptional regulator of the PUR fam	100.0
PF04845	218	PurA: PurA ssDNA and RNA-binding protein; InterPro	100.0
PF04845	218	PurA: PurA ssDNA and RNA-binding protein; InterPro	100.0
KOG3074	263	consensus Transcriptional regulator of the PUR fam	100.0
smart00712	63	PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamm	99.87
smart00712	63	PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamm	99.84
PF11680	124	DUF3276: Protein of unknown function (DUF3276); In	97.18
PF11680	124	DUF3276: Protein of unknown function (DUF3276); In	96.95

>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]

Probab=100.00  E-value=9.7e-74  Score=521.46  Aligned_cols=217  Identities=49%  Similarity=0.839  Sum_probs=189.5

Q ss_pred             CCCCCCCCCCCCCCCCCccceeeeeeeeeceeEEEeccCCCCcceEEEEEecCCcceEEEeecccHHHHHHHHhhhhc--
Q 022261           13 GGSGGVTGGGAGGGGGNDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYVN--   90 (300)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~eL~Sk~l~ie~KrFYlDlKeN~RGRFLKIaE~~~g~rs~I~lp~~g~~efrd~L~~y~~--   90 (300)
                      +++..++|| |||+.++++|||||+|+||+||||||||||+|||||||||++.+.+|+|+||+++++||+|+|.+|++  
T Consensus         6 ~~g~~~~gG-gGG~~~~~~eLask~l~iq~KrfYlDvkqN~rGRflKIaE~g~~~~Sri~ls~s~aaef~d~l~~f~~~y   84 (263)
T KOG3074|consen    6 GGGGAVTGG-GGGGGGEDQELASKRLQIQHKRFYLDVKQNPRGRFLKIAEVGAGGRSRIILSLSVAAEFRDILNDFIEHY   84 (263)
T ss_pred             CCCCCCcCC-CCCccchhHHHhhhhhhhhhheEEEEeccCCCcceEEEEEeccCCcceEEEehhhHHHHHHHHHHHHHHH
Confidence            334445555 44678889999999999999999999999999999999999999999999999999999999966653  


Q ss_pred             -------------CCCccccccceecccceEEEecCCCCccceeEEeeeccCC--CCce---EeecCCCCchhHHHHHHH
Q 022261           91 -------------SDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSR--NRST---IIVPAGSSRDEGWAAFRN  152 (300)
Q Consensus        91 -------------~e~~~~~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~~~~--~Rst---I~IPa~~~~~qGw~~FRd  152 (300)
                                   .+++.++|+.|.+|||+||||||||+|||||||+|...++  .|++   |++|+     |||++|||
T Consensus        85 a~lg~~~~~~~~~~ee~~lkSe~L~~d~RkfY~DLKEN~RGRFLRI~qt~~rg~~~~~Q~~tIalPa-----qG~aEfrd  159 (263)
T KOG3074|consen   85 AQLGPPPPELAAPSEEHELKSEELQRDNRKFYLDLKENQRGRFLRISQTPMRGRQTRTQVQTIALPA-----QGIAEFRD  159 (263)
T ss_pred             HhcCCCCcccccchhhhhHHHHHHhhcCceEEEEcccccccceEEeeecccCCCCccccccceeccc-----hhHHHHHH
Confidence                         2445688999999999999999999999999999877543  3556   99999     99999999


Q ss_pred             HHHHHHHHhhhhccCCCCCCccchhccccccccCCccccCCCCCCCCCCccccccCCCCCcccccCCcccceeEeeccce
Q 022261          153 ILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKR  232 (300)
Q Consensus       153 ~L~ei~e~~~~~~~p~~~~~~~~e~l~~l~d~~G~g~~~~~~~q~~~~~~~~~~~~~~lP~~~~~~~~~~s~~irvdnKr  232 (300)
                      +|++|.                        ++||++-.    .|             +||+         .++|+||||+
T Consensus       160 aLaell------------------------e~~G~~~~----gq-------------elpe---------g~~~tvDnk~  189 (263)
T KOG3074|consen  160 ALAELL------------------------EDFGEGDE----GQ-------------ELPE---------GTSITVDNKR  189 (263)
T ss_pred             HHHHHH------------------------HHhCCccc----cC-------------CCCC---------CCeEEEecce
Confidence            999975                        45665432    12             6787         4889999999


Q ss_pred             EEEEcCCCCceeEEEEeeecC--CCCceeEechhhHHHHHHHHHHHHHHHHhhhc
Q 022261          233 FFFDLGSNNRGHFLRISEVTG--SDRSSIILPLSGLKQFHEIVGHFVEITKDRIE  285 (300)
Q Consensus       233 FyFDlg~N~RG~FLRISEv~g--~~RssI~IP~~~~~~F~d~l~~~~d~m~~~~~  285 (300)
                      ||||+|+|+||.|||||||++  .+|++||||.++|.+|+++|++|+++|++..+
T Consensus       190 F~Fd~G~N~~G~f~riSEVk~n~~yRnsITvP~k~w~~F~~~f~~y~e~mk~~~e  244 (263)
T KOG3074|consen  190 FLFDVGKNKRGVFVRISEVKSNGSYRNSITVPFKAWKRFGEVFGKYSEEMKKISE  244 (263)
T ss_pred             eEEecCCCCccceEEEEEecCCCCcccceeeehhHhhhhhhHHHHHHHHHHHhhh
Confidence            999999999999999999997  89999999999999999999999999998755

>PF04845 PurA: PurA ssDNA and RNA-binding protein; InterPro: IPR006628 The Pur protein family consists of four known members in humans and is strongly conserved throughout evolution

Probab=100.00  E-value=1.6e-70  Score=495.80  Aligned_cols=199  Identities=39%  Similarity=0.700  Sum_probs=109.0

Q ss_pred             ccceeeeeeeeeceeEEEeccCCCCcceEEEEEecCC-cceEEEeecccHHHHHHHHhhhh----c---------CCC--
Q 022261           30 DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTSA-TRSTIIVPSSGISWFLDLFNYYV----N---------SDD--   93 (300)
Q Consensus        30 ~~eL~Sk~l~ie~KrFYlDlKeN~RGRFLKIaE~~~g-~rs~I~lp~~g~~efrd~L~~y~----~---------~e~--   93 (300)
                      ++|||||+|+||+||||||||||.|||||||||++.+ +||+|+|+|+++++|+|+|.+|+    .         .++  
T Consensus         1 e~eLask~l~iq~KrfYlDVkqN~RGrfiKiaE~~~~g~ksri~lsm~~A~efrd~L~~f~~~ya~l~p~n~~~~~~~~~   80 (218)
T PF04845_consen    1 EQELASKMLQIQNKRFYLDVKQNRRGRFIKIAEVGAGGRKSRITLSMSAAAEFRDHLGDFIEFYAQLGPSNPENLPDEGR   80 (218)
T ss_dssp             -EEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-TT--EEEEEEEHHHHHHHHHHHHHHHHHHHCS-S--SS---TT--
T ss_pred             CchhhhhheEecceEEEEEecccCcceeEEEeeccCCCCcceEEEechhHHHHHHHHHHHHHHHhccCCCCccccccccc
Confidence            4799999999999999999999999999999999974 89999999999999999996554    2         122  


Q ss_pred             ccccccceecccceEEEecCCCCccceeEEeeecc-C--CCCceEeecCCCCchhHHHHHHHHHHHHHHHhhhhccCCCC
Q 022261           94 HELFSKELQLDSKVFYFDIGENRRGRFLKVSEASV-S--RNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQ  170 (300)
Q Consensus        94 ~~~~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~~-~--~~RstI~IPa~~~~~qGw~~FRd~L~ei~e~~~~~~~p~~~  170 (300)
                      ..++|+.|.+|+|+||||||||+|||||||||... +  ..|++|+||+     +|+.+|+++|++|.+           
T Consensus        81 ~~lkSe~i~~e~r~yylDLKEN~RGrfLRisq~~~~~~~~~R~qIaiPa-----~G~~ef~~al~~lid-----------  144 (218)
T PF04845_consen   81 SELKSEKINVENRRYYLDLKENSRGRFLRISQTVSRGPRGRRSQIAIPA-----QGMIEFRDALTDLID-----------  144 (218)
T ss_dssp             -ECEEEEEEETTEEEEEEEEEETTEEEEEEEEEETTT----EEEEEEEG-----GGHHHHHHHHHHHHH-----------
T ss_pred             ceeeehheeeccceEEEEcccccCcceEEEEEeeccCCCCCccEEEEeh-----HHHHHHHHHHHHHHH-----------
Confidence            25789999999999999999999999999999875 1  4799999999     999999999999754           


Q ss_pred             CCccchhccccccccCCccccCCCCCCCCCCccccccCCCCCcccccCCcccceeEeeccceEEEEcCCCCceeEEEEee
Q 022261          171 GSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISE  250 (300)
Q Consensus       171 ~~~~~e~l~~l~d~~G~g~~~~~~~q~~~~~~~~~~~~~~lP~~~~~~~~~~s~~irvdnKrFyFDlg~N~RG~FLRISE  250 (300)
                                   +||++...              +.+.+||+         |++|++|||+||||||+|+||+||||||
T Consensus       145 -------------~~g~~~~~--------------~~~~~Lpe---------s~~lrvdnK~FyFD~g~N~rG~fLrISE  188 (218)
T PF04845_consen  145 -------------EFGEDDEE--------------DEQGELPE---------SKSLRVDNKRFYFDVGSNRRGVFLRISE  188 (218)
T ss_dssp             -------------HH-----------------------------------------------------------------
T ss_pred             -------------HhcCcccc--------------cccccCCC---------CcEEEECCeEEEEECCCCCCeeEEEecc
Confidence                         44433210              12346887         7999999999999999999999999999


Q ss_pred             ecCCCCceeEechhhHHHHHHHHHHHHHHH
Q 022261          251 VTGSDRSSIILPLSGLKQFHEIVGHFVEIT  280 (300)
Q Consensus       251 v~g~~RssI~IP~~~~~~F~d~l~~~~d~m  280 (300)
                      |++.+||+||||+++|.+|+|+|++|+++|
T Consensus       189 v~~~~Rs~ItIP~~~w~~Fr~~~~~~~e~M  218 (218)
T PF04845_consen  189 VKSNFRSAITIPESAWSRFRDIFNEYAEEM  218 (218)
T ss_dssp             ------------------------------
T ss_pred             cCCCCCceeeCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999998

Pur-alpha is a highly conserved, sequence-specific DNA- and RNA-binding protein involved in diverse cellular and viral functions including transcription, replication, and cell growth. Pur-alpha has a modular structure with alternating three basic aromatic class I and two acidic leucine-rich class II repeats in the central region of the protein []. In addition to its involved in basic cellular function, Pur-alpha, has been implicated in the development of blood cells and cells of the central nervous system; it has also been implicated in the inhibition of oncogenic transformation and along with Pur-beta in myelodysplastic syndrome progressing to acute myelogenous leukemia. Pur-alpha can influence viral interaction through functional associations, for example with the Tat protein and TAR RNA of HIV-1, and with large T-antigen and DNA regulatory regions of JC virus. JC virus causes opportunistic infections in the brains of certain HIV-1-infected individuals [].; PDB: 3K44_A.

>PF04845 PurA: PurA ssDNA and RNA-binding protein; InterPro: IPR006628 The Pur protein family consists of four known members in humans and is strongly conserved throughout evolution

Probab=100.00  E-value=9.2e-43  Score=315.44  Aligned_cols=125  Identities=43%  Similarity=0.758  Sum_probs=52.7

Q ss_pred             ccceeeeeeeeeceeEEEeccCCCCcceEEEEEecC----CcceEEEeecccHHHHHHHH----hhhhcCC-----Cccc
Q 022261           30 DVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTS----ATRSTIIVPSSGISWFLDLF----NYYVNSD-----DHEL   96 (300)
Q Consensus        30 ~~eL~Sk~l~ie~KrFYlDlKeN~RGRFLKIaE~~~----g~rs~I~lp~~g~~efrd~L----~~y~~~e-----~~~~   96 (300)
                      +.+|||++|++|+|+||||||||+|||||||+|+..    ++|+||+||+|||.||+|+|    ++|+.++     .+.+
T Consensus        80 ~~~lkSe~i~~e~r~yylDLKEN~RGrfLRisq~~~~~~~~~R~qIaiPa~G~~ef~~al~~lid~~g~~~~~~~~~~Lp  159 (218)
T PF04845_consen   80 RSELKSEKINVENRRYYLDLKENSRGRFLRISQTVSRGPRGRRSQIAIPAQGMIEFRDALTDLIDEFGEDDEEDEQGELP  159 (218)
T ss_dssp             --ECEEEEEEETTEEEEEEEEEETTEEEEEEEEEETTT----EEEEEEEGGGHHHHHHHHHHHHHHH-------------
T ss_pred             cceeeehheeeccceEEEEcccccCcceEEEEEeeccCCCCCccEEEEehHHHHHHHHHHHHHHHHhcCcccccccccCC
Confidence            569999999999999999999999999999999976    78999999999999999888    5665533     1235


Q ss_pred             cccceecccceEEEecCCCCccceeEEeeeccCCCCceEeecCCCCchhHHHHHHHHHHHHHHH
Q 022261           97 FSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEA  160 (300)
Q Consensus        97 ~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~~~~~RstI~IPa~~~~~qGw~~FRd~L~ei~e~  160 (300)
                      .+++|+++||+|||||++|+||+|||||||+ +..|++|+||+     ++|.+||++|++|+|+
T Consensus       160 es~~lrvdnK~FyFD~g~N~rG~fLrISEv~-~~~Rs~ItIP~-----~~w~~Fr~~~~~~~e~  217 (218)
T PF04845_consen  160 ESKSLRVDNKRFYFDVGSNRRGVFLRISEVK-SNFRSAITIPE-----SAWSRFRDIFNEYAEE  217 (218)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CCcEEEECCeEEEEECCCCCCeeEEEecccC-CCCCceeeCCH-----HHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999 56899999998     8999999999999753

Pur-alpha is a highly conserved, sequence-specific DNA- and RNA-binding protein involved in diverse cellular and viral functions including transcription, replication, and cell growth. Pur-alpha has a modular structure with alternating three basic aromatic class I and two acidic leucine-rich class II repeats in the central region of the protein []. In addition to its involved in basic cellular function, Pur-alpha, has been implicated in the development of blood cells and cells of the central nervous system; it has also been implicated in the inhibition of oncogenic transformation and along with Pur-beta in myelodysplastic syndrome progressing to acute myelogenous leukemia. Pur-alpha can influence viral interaction through functional associations, for example with the Tat protein and TAR RNA of HIV-1, and with large T-antigen and DNA regulatory regions of JC virus. JC virus causes opportunistic infections in the brains of certain HIV-1-infected individuals [].; PDB: 3K44_A.

>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]

Probab=100.00  E-value=9.4e-39  Score=292.14  Aligned_cols=148  Identities=37%  Similarity=0.603  Sum_probs=126.3

Q ss_pred             CCCccccccceecccceEEEecCCCCccceeEEeeeccCCCCceEeecCCCCchhHHHHHHHHHHHHHHHhhhhccCCCC
Q 022261           91 SDDHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQ  170 (300)
Q Consensus        91 ~e~~~~~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~~~~~RstI~IPa~~~~~qGw~~FRd~L~ei~e~~~~~~~p~~~  170 (300)
                      .++++++|+.|+|++||||||||+|+|||||||+|+++. .||+|++|.     .+.++|||.|+++.++|+++.||..+
T Consensus        20 ~~~~eLask~l~iq~KrfYlDvkqN~rGRflKIaE~g~~-~~Sri~ls~-----s~aaef~d~l~~f~~~ya~lg~~~~~   93 (263)
T KOG3074|consen   20 GEDQELASKRLQIQHKRFYLDVKQNPRGRFLKIAEVGAG-GRSRIILSL-----SVAAEFRDILNDFIEHYAQLGPPPPE   93 (263)
T ss_pred             chhHHHhhhhhhhhhheEEEEeccCCCcceEEEEEeccC-CcceEEEeh-----hhHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            456789999999999999999999999999999999975 679999999     56789999999999999999877531


Q ss_pred             CCccchhccccccccCCccccCCCCCCCCCCccccccCCCCCcccccCCcccceeEeeccceEEEEcCCCCceeEEEEee
Q 022261          171 GSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISE  250 (300)
Q Consensus       171 ~~~~~e~l~~l~d~~G~g~~~~~~~q~~~~~~~~~~~~~~lP~~~~~~~~~~s~~irvdnKrFyFDlg~N~RG~FLRISE  250 (300)
                      .                                      ..|.. +  ..++|+.|..|||+|||||++|+|||||||+|
T Consensus        94 ~--------------------------------------~~~~e-e--~~lkSe~L~~d~RkfY~DLKEN~RGRFLRI~q  132 (263)
T KOG3074|consen   94 L--------------------------------------AAPSE-E--HELKSEELQRDNRKFYLDLKENQRGRFLRISQ  132 (263)
T ss_pred             c--------------------------------------ccchh-h--hhHHHHHHhhcCceEEEEcccccccceEEeee
Confidence            0                                      00111 1  46789999999999999999999999999998


Q ss_pred             ec--CC-CCce---eEechhhHHHHHHHHHHHHHHHHhhhc
Q 022261          251 VT--GS-DRSS---IILPLSGLKQFHEIVGHFVEITKDRIE  285 (300)
Q Consensus       251 v~--g~-~Rss---I~IP~~~~~~F~d~l~~~~d~m~~~~~  285 (300)
                      ..  ++ .|++   |++|+++|++|||+|.+|+++--+-.+
T Consensus       133 t~~rg~~~~~Q~~tIalPaqG~aEfrdaLaelle~~G~~~~  173 (263)
T KOG3074|consen  133 TPMRGRQTRTQVQTIALPAQGIAEFRDALAELLEDFGEGDE  173 (263)
T ss_pred             cccCCCCccccccceeccchhHHHHHHHHHHHHHHhCCccc
Confidence            54  54 6666   999999999999999999998765544

>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

Probab=99.87  E-value=1.4e-22  Score=153.07  Aligned_cols=60  Identities=42%  Similarity=0.727  Sum_probs=57.4

Q ss_pred             cceeEeeccceEEEEcCCCCceeEEEEeeecCCC-CceeEechhhHHHHHHHHHHHHHHHH
Q 022261          222 VSKVIRADQKRFFFDLGSNNRGHFLRISEVTGSD-RSSIILPLSGLKQFHEIVGHFVEITK  281 (300)
Q Consensus       222 ~s~~irvdnKrFyFDlg~N~RG~FLRISEv~g~~-RssI~IP~~~~~~F~d~l~~~~d~m~  281 (300)
                      .|++|++++|+|||||++|+||+||||||++... |++|+||+++|.+|+|+|++++|.|.
T Consensus         3 ~Sk~l~~~~k~fyfDvk~N~rG~fLrIsE~~~~~~r~~I~lp~~~~~~F~~~l~~~~~~~~   63 (63)
T smart00712        3 ASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGGRSSITVPEQGAAEFRDALNKLIEKYG   63 (63)
T ss_pred             cccEEEeCCcEEEEEecccCCccEEEEEEecCCCCceEEEEEHHHHHHHHHHHHHHHHhhC
Confidence            4899999999999999999999999999999887 99999999999999999999999873

>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria

Probab=99.84  E-value=3.5e-21  Score=145.48  Aligned_cols=61  Identities=51%  Similarity=0.825  Sum_probs=56.5

Q ss_pred             cccccceecccceEEEecCCCCccceeEEeeeccCCCCceEeecCCCCchhHHHHHHHHHHHHHHH
Q 022261           95 ELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEA  160 (300)
Q Consensus        95 ~~~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~~~~~RstI~IPa~~~~~qGw~~FRd~L~ei~e~  160 (300)
                      ++.|+.|+++||+||||||+|+||+||||||++.+..|++|+||+     ++|.+|+++|++++|.
T Consensus         1 el~Sk~l~~~~k~fyfDvk~N~rG~fLrIsE~~~~~~r~~I~lp~-----~~~~~F~~~l~~~~~~   61 (63)
T smart00712        1 ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGGRSSITVPE-----QGAAEFRDALNKLIEK   61 (63)
T ss_pred             CCcccEEEeCCcEEEEEecccCCccEEEEEEecCCCCceEEEEEH-----HHHHHHHHHHHHHHHh
Confidence            367999999999999999999999999999999765599999998     8999999999999765

>PF11680 DUF3276: Protein of unknown function (DUF3276); InterPro: IPR021694 This bacterial family of proteins has no known function

Probab=97.18  E-value=0.00085  Score=57.43  Aligned_cols=64  Identities=28%  Similarity=0.539  Sum_probs=53.4

Q ss_pred             cccceeEeeccceEEEEcCCCCce-eEEEEeeec----CC-----CCceeEechhhHHHHHHHHHHHHHHHHhh
Q 022261          220 MGVSKVIRADQKRFFFDLGSNNRG-HFLRISEVT----GS-----DRSSIILPLSGLKQFHEIVGHFVEITKDR  283 (300)
Q Consensus       220 ~~~s~~irvdnKrFyFDlg~N~RG-~FLRISEv~----g~-----~RssI~IP~~~~~~F~d~l~~~~d~m~~~  283 (300)
                      .+-|+.|+++.++|||||++|..| .||-|+|-+    +.     .|..|.|=..-+.+|.++|.+.++-++..
T Consensus        11 eifSk~v~agkRtYFFDVK~~r~gD~yLtItESKk~~~~~g~~~f~khkI~LYkEDf~~F~~~L~e~i~~i~~~   84 (124)
T PF11680_consen   11 EIFSKVVKAGKRTYFFDVKENRKGDYYLTITESKKFTDGDGSFSFEKHKIFLYKEDFEKFLEGLDEAIDFIKKE   84 (124)
T ss_dssp             EEEEEE--SSSEEEEEEEEE-TTS-EEEEEEEEEE-TTS-----EEEEEEEEEGGGHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeeecCCeeEEEEeecccCCCEEEEEEeecccCCCCcceeeeeeEEEEeHHHHHHHHHHHHHHHHHHHHh
Confidence            346899999999999999999997 689999966    22     68999999999999999999999988755

; PDB: 3NM7_C 3N8B_A.

>PF11680 DUF3276: Protein of unknown function (DUF3276); InterPro: IPR021694 This bacterial family of proteins has no known function

Probab=96.95  E-value=0.0022  Score=54.91  Aligned_cols=60  Identities=25%  Similarity=0.511  Sum_probs=47.5

Q ss_pred             CccceeeeeeeeeceeEEEeccCCCCcc-eEEEEEec-----CC----cceEEEeecccHHHHHHHHhhh
Q 022261           29 NDVELVCKTLQVEHKLFYFDLKENPRGR-YLKISEKT-----SA----TRSTIIVPSSGISWFLDLFNYY   88 (300)
Q Consensus        29 ~~~eL~Sk~l~ie~KrFYlDlKeN~RGR-FLKIaE~~-----~g----~rs~I~lp~~g~~efrd~L~~y   88 (300)
                      ...+|.|+.|...+|.||+|||+|..|. ||-|+|..     .|    .|.+|.|=.+-+..|.+.|++.
T Consensus         8 ~r~eifSk~v~agkRtYFFDVK~~r~gD~yLtItESKk~~~~~g~~~f~khkI~LYkEDf~~F~~~L~e~   77 (124)
T PF11680_consen    8 DREEIFSKVVKAGKRTYFFDVKENRKGDYYLTITESKKFTDGDGSFSFEKHKIFLYKEDFEKFLEGLDEA   77 (124)
T ss_dssp             -TTEEEEEE--SSSEEEEEEEEE-TTS-EEEEEEEEEE-TTS-----EEEEEEEEEGGGHHHHHHHHHHH
T ss_pred             ccceeeeeeeecCCeeEEEEeecccCCCEEEEEEeecccCCCCcceeeeeeEEEEeHHHHHHHHHHHHHH
Confidence            4578999999999999999999999997 89999973     22    5889999999999998888653

; PDB: 3NM7_C 3N8B_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
3k44_A	146	Crystal Structure Of Drosophila Melanogaster Pur-Al		9e-14
3k44_A	146	Crystal Structure Of Drosophila Melanogaster Pur-Al		9e-13

>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha Length = 146

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 22/144 (15%)
Query: 32  ELVCKTLQVEHKLFYFDLKENPRGRYLKISE-KTSATRSTIIVPSSGISWFLDLF----N 86
           EL  K LQ++ K FY D+K+N RGR++K++E      RS I +  S  + F D      +
Sbjct: 4   ELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSD 63
Query: 87  YYV-----NSD----DHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRN--RSTI 135
           YY      N+D    D +L S+ +  D + +Y D+ EN RGRFL+VS+ +++R   RS I
Sbjct: 64  YYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQ-TITRGGPRSQI 122
Query: 136 IVPAGSSRDEGWAAFRNILAEINE 159
            +PA     +G   FR+ L ++ E
Sbjct: 123 ALPA-----QGMIEFRDALTDLLE 141

>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha Length = 146

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 50/188 (26%)
Query: 93  DHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRN 152
           + EL +K LQ+ SK FY D+ +NRRGRF+KV+E      RS I +   ++     A FR+
Sbjct: 2   EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTA-----AEFRD 56
Query: 153 ILAEINEASRLLILPNQQGSEQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLP 212
                                   HL   SD         + S   P    N D   +LP
Sbjct: 57  ------------------------HLSSFSD--------YYASLGPP----NTD---NLP 77
Query: 213 AQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEVT--GSDRSSIILPLSGLKQFH 270
              E G +    +I+ D +R++ DL  N RG FLR+S+    G  RS I LP  G+ +F 
Sbjct: 78  ---EDGKLKSEMMIK-DYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFR 133
Query: 271 EIVGHFVE 278
           + +   +E
Sbjct: 134 DALTDLLE 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	100.0
3k44_A	146	Purine-rich binding protein-alpha, isoform B; PUR-	100.0
3n8b_A	98	Uncharacterized protein; PUR-alpha, PUR repeat, PU	98.25
3n8b_A	98	Uncharacterized protein; PUR-alpha, PUR repeat, PU	98.2
3nm7_A	127	Uncharacterized protein; PUR-alpha, PUR repeat, PU	96.93
3nm7_A	127	Uncharacterized protein; PUR-alpha, PUR repeat, PU	96.6

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}

Probab=100.00  E-value=1.7e-48  Score=334.55  Aligned_cols=141  Identities=37%  Similarity=0.602  Sum_probs=126.5

Q ss_pred             CccccccceecccceEEEecCCCCccceeEEeeeccCCCCceEeecCCCCchhHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 022261           93 DHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLLILPNQQGS  172 (300)
Q Consensus        93 ~~~~~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~~~~~RstI~IPa~~~~~qGw~~FRd~L~ei~e~~~~~~~p~~~~~  172 (300)
                      +++++|+.|++|+|+||||||+|+|||||||||+.+++.|++|+||+     +||.+|||+|++++|+++.+.++++   
T Consensus         2 ~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~-----~~~~efrd~L~~~ie~~~~~g~~~~---   73 (146)
T 3k44_A            2 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLAL-----STAAEFRDHLSSFSDYYASLGPPNT---   73 (146)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECH-----HHHHHHHHHHHHHHHHHHTSCSCCS---
T ss_pred             cccccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEh-----hHHHHHHHHHHHHHHHHHhcCCCcc---
Confidence            57899999999999999999999999999999998777899999999     9999999999999998876554332   


Q ss_pred             ccchhccccccccCCccccCCCCCCCCCCccccccCCCCCcccccCCcccceeEeeccceEEEEcCCCCceeEEEEeee-
Q 022261          173 EQSEHLVGLSDDVGAGFISGHGSQPAPASELNVDRSVDLPAQDEIGNMGVSKVIRADQKRFFFDLGSNNRGHFLRISEV-  251 (300)
Q Consensus       173 ~~~e~l~~l~d~~G~g~~~~~~~q~~~~~~~~~~~~~~lP~~~~~~~~~~s~~irvdnKrFyFDlg~N~RG~FLRISEv-  251 (300)
                                                          .+||+.    +.++|++|++|||+||||||+|+||+||||||+ 
T Consensus        74 ------------------------------------~~~~~~----~~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~  113 (146)
T 3k44_A           74 ------------------------------------DNLPED----GKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTI  113 (146)
T ss_dssp             ------------------------------------SCCCTT----CEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ------------------------------------ccCCcc----ccccchheeccCceEEEEecccCcceEEEEEEee
Confidence                                                145553    335689999999999999999999999999999 


Q ss_pred             -cCCCCceeEechhhHHHHHHHHHHHHHHHH
Q 022261          252 -TGSDRSSIILPLSGLKQFHEIVGHFVEITK  281 (300)
Q Consensus       252 -~g~~RssI~IP~~~~~~F~d~l~~~~d~m~  281 (300)
                       ++++|++||||+++|.+|+|+|++|+|+|.
T Consensus       114 ~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~  144 (146)
T 3k44_A          114 TRGGPRSQIALPAQGMIEFRDALTDLLEEFG  144 (146)
T ss_dssp             SSCCCCEEEEEEGGGHHHHHHHHHHHHHHHC
T ss_pred             ccCCCcceEEecHHHHHHHHHHHHHHHHHhc
Confidence             589999999999999999999999999984

>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-47  Score=329.54  Aligned_cols=128  Identities=38%  Similarity=0.623  Sum_probs=113.2

Q ss_pred             CccceeeeeeeeeceeEEEeccCCCCcceEEEEEecC-CcceEEEeecccHHHHHHHHh----hhhcC---------CCc
Q 022261           29 NDVELVCKTLQVEHKLFYFDLKENPRGRYLKISEKTS-ATRSTIIVPSSGISWFLDLFN----YYVNS---------DDH   94 (300)
Q Consensus        29 ~~~eL~Sk~l~ie~KrFYlDlKeN~RGRFLKIaE~~~-g~rs~I~lp~~g~~efrd~L~----~y~~~---------e~~   94 (300)
                      ++++||||+|++|+||||||||||+|||||||||+++ +.||+|+||+++++||+|+|.    +|+..         ++.
T Consensus         1 ~~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g~~~~~~~~~~~   80 (146)
T 3k44_A            1 VEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDG   80 (146)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSCSCCSSCCCTTC
T ss_pred             CcccccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcCCCccccCCccc
Confidence            3689999999999999999999999999999999965 789999999999999999985    55421         222


Q ss_pred             cccccceecccceEEEecCCCCccceeEEeeec-cCCCCceEeecCCCCchhHHHHHHHHHHHHHHHh
Q 022261           95 ELFSKELQLDSKVFYFDIGENRRGRFLKVSEAS-VSRNRSTIIVPAGSSRDEGWAAFRNILAEINEAS  161 (300)
Q Consensus        95 ~~~s~~l~vdnKrFYfDvkeN~RGrFLRISEv~-~~~~RstI~IPa~~~~~qGw~~FRd~L~ei~e~~  161 (300)
                      .+.|+.|++|||+||||||+|+|||||||||+. .+++|++||||+     +||++|||+|++|+|++
T Consensus        81 ~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~~~~~~R~~I~iP~-----~g~~~Fr~~l~~~~~~~  143 (146)
T 3k44_A           81 KLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPA-----QGMIEFRDALTDLLEEF  143 (146)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSCCCCEEEEEEG-----GGHHHHHHHHHHHHHHH
T ss_pred             cccchheeccCceEEEEecccCcceEEEEEEeeccCCCcceEEecH-----HHHHHHHHHHHHHHHHh
Confidence            355778999999999999999999999999995 356899999999     99999999999998764

>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}

Probab=98.25  E-value=1.2e-06  Score=70.50  Aligned_cols=60  Identities=23%  Similarity=0.524  Sum_probs=54.4

Q ss_pred             eeEeeccceEEEEcCCCCcee-EEEEeeec----CC-CCceeEechhhHHHHHHHHHHHHHHHHhh
Q 022261          224 KVIRADQKRFFFDLGSNNRGH-FLRISEVT----GS-DRSSIILPLSGLKQFHEIVGHFVEITKDR  283 (300)
Q Consensus       224 ~~irvdnKrFyFDlg~N~RG~-FLRISEv~----g~-~RssI~IP~~~~~~F~d~l~~~~d~m~~~  283 (300)
                      +++++..++|||||++|+.|. ||.|+|-+    +. .|..|.|+..-+.+|.++|.+.++-++..
T Consensus         9 kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~~   74 (98)
T 3n8b_A            9 KMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKAIAVIKQK   74 (98)
T ss_dssp             EECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHHHHHHHHh
Confidence            566788999999999999998 99999975    44 79999999999999999999999999876

>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}

Probab=98.20  E-value=3.3e-06  Score=68.06  Aligned_cols=59  Identities=22%  Similarity=0.377  Sum_probs=52.4

Q ss_pred             ccceeeeeeeee-ceeEEEeccCCCCcc-eEEEEEec----CC-cceEEEeecccHHHHHHHHhhh
Q 022261           30 DVELVCKTLQVE-HKLFYFDLKENPRGR-YLKISEKT----SA-TRSTIIVPSSGISWFLDLFNYY   88 (300)
Q Consensus        30 ~~eL~Sk~l~ie-~KrFYlDlKeN~RGR-FLKIaE~~----~g-~rs~I~lp~~g~~efrd~L~~y   88 (300)
                      .+||-|+++... +|.||+|||+|..|. ||.|+|..    .. .|.+|.|..+-+..|.+.|++.
T Consensus         2 RgEvfS~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~   67 (98)
T 3n8b_A            2 RGEVYSEKMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKA   67 (98)
T ss_dssp             TTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred             cchhhHHHHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHH
Confidence            478999999998 999999999999999 99999983    22 5899999999999999988764

>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}

Probab=96.93  E-value=0.0018  Score=54.14  Aligned_cols=61  Identities=30%  Similarity=0.464  Sum_probs=52.0

Q ss_pred             CCccceeeeeeeee-ceeEEEeccCCCCcc-eEEEEEec---CC--cceEEEeecccHHHHHHHHhhh
Q 022261           28 GNDVELVCKTLQVE-HKLFYFDLKENPRGR-YLKISEKT---SA--TRSTIIVPSSGISWFLDLFNYY   88 (300)
Q Consensus        28 ~~~~eL~Sk~l~ie-~KrFYlDlKeN~RGR-FLKIaE~~---~g--~rs~I~lp~~g~~efrd~L~~y   88 (300)
                      |..+||-|+.|... ++.||+|||+|..|. ||-|+|..   .+  .|..|.|=.+-+..|.+.|++.
T Consensus         7 g~ReEIfSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~   74 (127)
T 3nm7_A            7 GERGEVYSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKA   74 (127)
T ss_dssp             -CTTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred             cchhhhhHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHH
Confidence            45689999999887 999999999999997 89999973   23  5889999999999999888654

>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}

Probab=96.60  E-value=0.0032  Score=52.67  Aligned_cols=64  Identities=23%  Similarity=0.519  Sum_probs=54.2

Q ss_pred             cce-eEeeccceEEEEcCCCCce-eEEEEeeec----CC-CCceeEechhhHHHHHHHHHHHHHHHHhhhc
Q 022261          222 VSK-VIRADQKRFFFDLGSNNRG-HFLRISEVT----GS-DRSSIILPLSGLKQFHEIVGHFVEITKDRIE  285 (300)
Q Consensus       222 ~s~-~irvdnKrFyFDlg~N~RG-~FLRISEv~----g~-~RssI~IP~~~~~~F~d~l~~~~d~m~~~~~  285 (300)
                      -|+ ++++..++|||||++|..| .||-|+|-+    +. .|..|.|=..-+..|.++|.+.++-++....
T Consensus        13 fSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~i~~I~~~~~   83 (127)
T 3nm7_A           13 YSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIKQKVS   83 (127)
T ss_dssp             EEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHHHHHHHHhcC
Confidence            454 4467789999999999996 689999976    33 7899999999999999999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00