Citrus Sinensis ID: 022273

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Secondary Structure (PSIPRED)
cccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEHccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavatatflvlqpsfsspfavtpsskltfpnyssprrriglsTVACTYVAlsskgqgafdpeLRSVLELATDSELYELERilfgpsyfspllksftkradvdYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKnlnipcssklstEDLEAEIFLHLLQEYaseesgvfpgswenseasdaqnsLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDnwlpliwspeqpclqQSRALLVLQQNILV
Flexible Loop (DISEMBL)
MAVATATFlvlqpsfsspfavtpsskLTFPNYSSPRRRIGLSTVACTYVALsskgqgafdpELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADArstlrgwrPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWspeqpclqqSRALLVLQQNILV
Low Complexity Region (SEG)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Disordered region (IsUnstruct)
*****ATFLVLQP*F*************F******RRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS*********************LELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQ****
Disordered Region (DISOPRED)
********LVLQPSFSSPF*******************************************LRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYV**EQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYA***************************************AGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Disordered Region (DISEMBL)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Disordered Region (DISPRO)
*AVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVAL**KGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLPLIWSPEQPCLQQSRALLVLQQNILV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
359495113	346	PREDICTED: uncharacterized protein LOC10	0.803	0.696	0.739	1e-99
359495111	354	PREDICTED: uncharacterized protein LOC10	0.803	0.680	0.739	2e-99
224125914	355	predicted protein [Populus trichocarpa]	0.773	0.653	0.697	2e-86
334183893	357	uncharacterized protein [Arabidopsis tha	0.873	0.733	0.623	2e-86
18410364	351	uncharacterized protein [Arabidopsis tha	0.873	0.746	0.623	2e-86
27754453	350	unknown protein [Arabidopsis thaliana]	0.8	0.685	0.661	5e-86
255573521	372	conserved hypothetical protein [Ricinus	0.77	0.620	0.690	2e-85
449439491	343	PREDICTED: uncharacterized protein LOC10	0.84	0.734	0.619	4e-84
297839209	351	hypothetical protein ARALYDRAFT_895206 [	0.886	0.757	0.606	3e-83
11120789	351	unknown protein [Arabidopsis thaliana]	0.863	0.737	0.605	1e-80

>gi|359495113|ref|XP_003634913.1| PREDICTED: uncharacterized protein LOC100243690 isoform 2 [Vitis vinifera]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/246 (73%), Positives = 204/246 (82%), Gaps = 5/246 (2%)

Query: 28  TFPNY-----SSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERIL 82
           T PNY      SP  +I L  V  ++ ++S  GQGAFDPELR VLELATDSEL+ELERIL
Sbjct: 18  TKPNYPIFRSRSPSTKITLGLVFSSHSSISRNGQGAFDPELRPVLELATDSELFELERIL 77

Query: 83  FGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142
           FGPSYFSPLLKS ++RADVDY MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSY
Sbjct: 78  FGPSYFSPLLKSISRRADVDYAMIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSY 137

Query: 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202
           RNVLL VRK LN+PCSSKLSTEDLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +L
Sbjct: 138 RNVLLGVRKKLNVPCSSKLSTEDLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNL 197

Query: 203 ELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIK 262
           E GLSQWKVQA+AA  AGA EL+S++LKGG + TL KIY LL R LSGK FLEAANYQIK
Sbjct: 198 EFGLSQWKVQAVAALGAGASELRSIILKGGSMLTLGKIYHLLARRLSGKLFLEAANYQIK 257

Query: 263 KEVLKK 268
            EV+KK
Sbjct: 258 NEVIKK 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495111|ref|XP_002263023.2| PREDICTED: uncharacterized protein LOC100243690 isoform 1 [Vitis vinifera] gi|296088813|emb|CBI38263.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/246 (73%), Positives = 204/246 (82%), Gaps = 5/246 (2%)

Query: 28  TFPNY-----SSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERIL 82
           T PNY      SP  +I L  V  ++ ++S  GQGAFDPELR VLELATDSEL+ELERIL
Sbjct: 18  TKPNYPIFRSRSPSTKITLGLVFSSHSSISRNGQGAFDPELRPVLELATDSELFELERIL 77

Query: 83  FGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142
           FGPSYFSPLLKS ++RADVDY MIE+DLEEREDFI+SLESRFLFLAADARSTLRGWRPSY
Sbjct: 78  FGPSYFSPLLKSISRRADVDYAMIEEDLEEREDFISSLESRFLFLAADARSTLRGWRPSY 137

Query: 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202
           RNVLL VRK LN+PCSSKLSTEDLE EIFLHLLQ+Y+SEESG    SWENS+AS +  +L
Sbjct: 138 RNVLLGVRKKLNVPCSSKLSTEDLEVEIFLHLLQDYSSEESGALSKSWENSKASTSHGNL 197

Query: 203 ELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIK 262
           E GLSQWKVQA+AA  AGA EL+S++LKGG + TL KIY LL R LSGK FLEAANYQIK
Sbjct: 198 EFGLSQWKVQAVAALGAGASELRSIILKGGSMLTLGKIYHLLARRLSGKLFLEAANYQIK 257

Query: 263 KEVLKK 268
            EV+KK
Sbjct: 258 NEVIKK 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125914|ref|XP_002329748.1| predicted protein [Populus trichocarpa] gi|222870656|gb|EEF07787.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 195/235 (82%), Gaps = 3/235 (1%)

Query: 37  RRIGLSTVACT-YVALSSKGQ-GAFDPELRSVLELATDSELYELERILFGPSYFSPLLKS 94
           + I  S + C+ + + S K Q G FD +LRSVLELATDSELYELE ILFGPS+FSPLLKS
Sbjct: 35  KNILYSPLRCSSHASFSPKSQDGPFDRDLRSVLELATDSELYELENILFGPSHFSPLLKS 94

Query: 95  F-TKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNL 153
             +KRA++DY M++QD+EERED I+ LESRF FLAADARSTLRGWRP+YRNVLL VRK L
Sbjct: 95  IASKRAEIDYAMMDQDMEEREDMISCLESRFFFLAADARSTLRGWRPTYRNVLLTVRKKL 154

Query: 154 NIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQA 213
           +I CSSKLSTEDLEAEIFLHLL+EYASE+SG FPG WE S+ SD Q SL +GLSQ KVQA
Sbjct: 155 SIGCSSKLSTEDLEAEIFLHLLEEYASEQSGTFPGLWELSKTSDDQGSLGIGLSQEKVQA 214

Query: 214 LAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKK 268
           LAA   GA +L+S++LKGGG++TL +IYQ L + L+GK FLEAANYQIKKE++KK
Sbjct: 215 LAAQKLGAADLQSIILKGGGVFTLTRIYQWLAKKLTGKVFLEAANYQIKKEIIKK 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183893|ref|NP_001185391.1| uncharacterized protein [Arabidopsis thaliana] gi|332197345|gb|AEE35466.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/271 (62%), Positives = 199/271 (73%), Gaps = 9/271 (3%)

Query: 3   VATATFLVLQPSFSSPFAVTPSSKLTFPNYS--SPR---RRIGLSTVACTYVALSSKGQG 57
           + + +  V+ P    PF    SS L     S   PR   RR  L     +  A  S  + 
Sbjct: 1   MTSVSVAVVAPPHRCPF----SSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEA 56

Query: 58  AFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFI 117
            +DPELR V ELATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI
Sbjct: 57  TYDPELRLVFELATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFI 116

Query: 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177
            +LESRFLFLAADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  
Sbjct: 117 EALESRFLFLAADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDN 176

Query: 178 YASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTL 237
           ++SE SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LKGGG+ T 
Sbjct: 177 FSSEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGMITF 236

Query: 238 VKIYQLLMRNLSGKFFLEAANYQIKKEVLKK 268
            K+YQLL + LSGK FLEAANYQI+KE+LKK
Sbjct: 237 AKVYQLLAKKLSGKVFLEAANYQIRKEMLKK 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410364|ref|NP_565065.1| uncharacterized protein [Arabidopsis thaliana] gi|21593462|gb|AAM65429.1| unknown [Arabidopsis thaliana] gi|124301178|gb|ABN04841.1| At1g73470 [Arabidopsis thaliana] gi|332197343|gb|AEE35464.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/271 (62%), Positives = 199/271 (73%), Gaps = 9/271 (3%)

Query: 3   VATATFLVLQPSFSSPFAVTPSSKLTFPNYS--SPR---RRIGLSTVACTYVALSSKGQG 57
           + + +  V+ P    PF    SS L     S   PR   RR  L     +  A  S  + 
Sbjct: 1   MTSVSVAVVAPPHRCPF----SSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEA 56

Query: 58  AFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFI 117
            +DPELR V ELATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI
Sbjct: 57  TYDPELRLVFELATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFI 116

Query: 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177
            +LESRFLFLAADARSTLRGWRPSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  
Sbjct: 117 EALESRFLFLAADARSTLRGWRPSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDN 176

Query: 178 YASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTL 237
           ++SE SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LKGGG+ T 
Sbjct: 177 FSSEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGMITF 236

Query: 238 VKIYQLLMRNLSGKFFLEAANYQIKKEVLKK 268
            K+YQLL + LSGK FLEAANYQI+KE+LKK
Sbjct: 237 AKVYQLLAKKLSGKVFLEAANYQIRKEMLKK 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754453|gb|AAO22674.1| unknown protein [Arabidopsis thaliana]

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 160/242 (66%), Positives = 190/242 (78%), Gaps = 2/242 (0%)

Query: 27  LTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPS 86
           L  P     R+++G +  +    A  S  +  +DPELR V ELATDSELYELE+ILFGPS
Sbjct: 27  LKIPRTGWRRKQLGFALASTA--ASESPSEATYDPELRLVFELATDSELYELEKILFGPS 84

Query: 87  YFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVL 146
           YFSPLLKS   +   D +MI QD+E R+ FI +LESRFLFLAADARSTLRGWRPSYRNVL
Sbjct: 85  YFSPLLKSIPNKGGGDRLMIGQDIEVRDGFIEALESRFLFLAADARSTLRGWRPSYRNVL 144

Query: 147 LAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGL 206
           LAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE SGVFPG WENSE S+A+ SLELGL
Sbjct: 145 LAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSEASGVFPGMWENSEVSEAEGSLELGL 204

Query: 207 SQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVL 266
           S+WKV+ LAA   GA E++SM+LKGGG+ T  K+YQLL + LSGK FLEAANYQI+KE+L
Sbjct: 205 SKWKVELLAALQVGATEVQSMILKGGGMITFAKVYQLLAKKLSGKVFLEAANYQIRKEML 264

Query: 267 KK 268
           KK
Sbjct: 265 KK 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573521|ref|XP_002527685.1| conserved hypothetical protein [Ricinus communis] gi|223532916|gb|EEF34684.1| conserved hypothetical protein [Ricinus communis]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/236 (69%), Positives = 184/236 (77%), Gaps = 5/236 (2%)

Query: 34  SPRRRIGLSTVACTYVALSSKGQGAFDPELRSVLELATDSELYELERILFGPSYFSPLLK 93
           S  ++  L  + C++ A+S    G  D ELRSVLELATDSELYELERILFGPSYFSPLLK
Sbjct: 56  SSDKKKSLGIIRCSHAAVS----GTLDRELRSVLELATDSELYELERILFGPSYFSPLLK 111

Query: 94  SFTKRA-DVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKN 152
           S T    DV+Y   E D+ ERE FIA+LESRFL+LAADARSTLRGWRPSYRNVLLAVRK 
Sbjct: 112 SITGNGVDVEYSTFEDDMAEREAFIAALESRFLYLAADARSTLRGWRPSYRNVLLAVRKK 171

Query: 153 LNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQ 212
           LNIPCS KL TEDLEAEIFLHLLQ++ SEESG  PG WE SE    Q SLE+GL QW  Q
Sbjct: 172 LNIPCSRKLPTEDLEAEIFLHLLQDHPSEESGTVPGLWEFSEVPSDQGSLEIGLRQWNGQ 231

Query: 213 ALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKK 268
           A+AA   G  EL+S++LKGGG++TL + YQLL R LSGK FLEAANYQIKKEV+KK
Sbjct: 232 AIAAIKLGLAELQSVILKGGGVFTLSRFYQLLARKLSGKVFLEAANYQIKKEVIKK 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439491|ref|XP_004137519.1| PREDICTED: uncharacterized protein LOC101204111 [Cucumis sativus] gi|449517717|ref|XP_004165891.1| PREDICTED: uncharacterized protein LOC101226231 [Cucumis sativus]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 166/268 (61%), Positives = 201/268 (75%), Gaps = 16/268 (5%)

Query: 1   MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFD 60
           MA A A    LQ +F SP A   S K+ +P +SS  RR G+  V C   +     QG FD
Sbjct: 1   MATALA---ALQFAFLSPAA---SKKIAYPFFSSSGRRNGVQFVGCVNASNPRNAQGGFD 54

Query: 61  PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASL 120
           P+LRSVLELAT+SELYELE+ILFGPSYFSPL+KS T R   DY MIE+DLEER+ FI+SL
Sbjct: 55  PDLRSVLELATNSELYELEQILFGPSYFSPLMKSITNRGQPDYAMIEEDLEERDGFISSL 114

Query: 121 ESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYAS 180
           ESRFLFLAADARSTLRGWRPSYR+VLL VRK LN+ CS+KLS+EDLEAEIFLHLLQEYAS
Sbjct: 115 ESRFLFLAADARSTLRGWRPSYRDVLLTVRKKLNVLCSTKLSSEDLEAEIFLHLLQEYAS 174

Query: 181 EESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKI 240
           EES            ++ + +L+LGL QWKVQ  AA + GA +L+S++L+GG + T+VK+
Sbjct: 175 EES---------VRQANLEGTLQLGLDQWKVQTSAATD-GASDLQSLILRGGSLITVVKM 224

Query: 241 YQLLMRNLSGKFFLEAANYQIKKEVLKK 268
           +Q+  R LSGK F EAANYQIKKE++KK
Sbjct: 225 FQVFARTLSGKVFREAANYQIKKEIIKK 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839209|ref|XP_002887486.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata] gi|297333327|gb|EFH63745.1| hypothetical protein ARALYDRAFT_895206 [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 162/267 (60%), Positives = 200/267 (74%), Gaps = 1/267 (0%)

Query: 3   VATATFLVLQPSFSSPFAVTPS-SKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDP 61
           + + +  V+ P    PF+   S +KL+     +  RR  L     +  A  S  +  +DP
Sbjct: 1   MTSVSVAVVAPPHRCPFSRHLSLTKLSLQIPRTGWRRKQLGFALASAAASESPSEATYDP 60

Query: 62  ELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLE 121
           ELR V ELATDSELYELE+ILFGPS FSPLLKS   +   D +MI QD++ R+ +I +LE
Sbjct: 61  ELRLVFELATDSELYELEKILFGPSSFSPLLKSIPNKGGRDRLMIGQDIQVRDGYIEALE 120

Query: 122 SRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASE 181
           SRFLFLAADARSTLRGWRPSY+NVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  ++SE
Sbjct: 121 SRFLFLAADARSTLRGWRPSYKNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDNFSSE 180

Query: 182 ESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIY 241
            SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA + GA E++SM+LKGGG+ T  K+Y
Sbjct: 181 ASGVFPGLWENSEVSEAKGSLELGLSKWKVELLAALHVGATEVQSMILKGGGVITFAKVY 240

Query: 242 QLLMRNLSGKFFLEAANYQIKKEVLKK 268
           QLL + LSGK FLEAANYQI+KE+LKK
Sbjct: 241 QLLAKKLSGKVFLEAANYQIRKEMLKK 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11120789|gb|AAG30969.1|AC012396_5 unknown protein [Arabidopsis thaliana]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/274 (60%), Positives = 195/274 (71%), Gaps = 15/274 (5%)

Query: 3   VATATFLVLQPSFSSPFAVTPSSKLTFPNYS--SPR---RRIGLSTVACTYVALSSKGQG 57
           + + +  V+ P    PF    SS L     S   PR   RR  L     +  A  S  + 
Sbjct: 1   MTSVSVAVVAPPHRCPF----SSHLNLNKLSLQIPRTGWRRKQLGFALASTAASESPSEA 56

Query: 58  AFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFI 117
            +DPELR V ELATDSELYELE+ILFGPSYFSPLLKS   +   D +MI QD+E R+ FI
Sbjct: 57  TYDPELRLVFELATDSELYELEKILFGPSYFSPLLKSIPNKGGGDRLMIGQDIEVRDGFI 116

Query: 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQ- 176
            +LESRFLFLAADARSTLR   PSYRNVLLAVR NLNIPCSS+L TEDLEAEIFL+L+  
Sbjct: 117 EALESRFLFLAADARSTLR---PSYRNVLLAVRNNLNIPCSSQLPTEDLEAEIFLYLVDN 173

Query: 177 --EYASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGI 234
              Y+ E SGVFPG WENSE S+A+ SLELGLS+WKV+ LAA   GA E++SM+LKGGG+
Sbjct: 174 FSRYSGEASGVFPGMWENSEVSEAEGSLELGLSKWKVELLAALQVGATEVQSMILKGGGM 233

Query: 235 YTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKK 268
            T  K+YQLL + LSGK FLEAANYQI+KE+LKK
Sbjct: 234 ITFAKVYQLLAKKLSGKVFLEAANYQIRKEMLKK 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
PRK10236	237	hypothetical protein; Provisional	100.0
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	99.77
COG4735	211	Uncharacterized protein conserved in bacteria [Fun	97.87
PF13099	35	DUF3944: Domain of unknown function (DUF3944)	96.23
PF03250	147	Tropomodulin: Tropomodulin; InterPro: IPR004934 Ac	81.11

>PRK10236 hypothetical protein; Provisional

Probab=100.00  E-value=2e-35  Score=269.72  Aligned_cols=125  Identities=20%  Similarity=0.362  Sum_probs=116.1

Q ss_pred             ChHHHHHHHhhChHHHHHHHHHhc-----CCCCCCccchhhc-cc---CCcchhHHhhhhHHHHHHHHHHHHHHhhhccc
Q 022273           60 DPELRSVLELATDSELYELERILF-----GPSYFSPLLKSFT-KR---ADVDYVMIEQDLEEREDFIASLESRFLFLAAD  130 (300)
Q Consensus        60 ddELr~~LELATdEEL~eLt~ILf-----~~s~fsPLLkSi~-kr---~~~Dy~~i~~~~q~R~~~i~~IEsRFqfLAAD  130 (300)
                      |++| +||..|++|||.+|++||+     ..|+++.|+++.. ++   +.+||.+          ||+.||+||||||||
T Consensus         8 D~DL-~fL~~cs~edL~~Lv~~Lt~d~dG~~R~te~lt~~~~yk~~~~~~~~~~~----------yw~~Ia~elq~fGgn   76 (237)
T PRK10236          8 DSDL-DFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRR----------NWQLIAGELQHFGGD   76 (237)
T ss_pred             CccH-HHHHhCCHHHHHHHHHHHhcCCCCCEeehhhhcccHHHHhhcccchhHHH----------HHHHHHHHHHHhcch
Confidence            4444 7999999999999999999     4577888888854 56   8999999          999999999999999


Q ss_pred             h-hhhhcCCCchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCCcccCCchhhhhHHHhhhh
Q 022273          131 A-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLS  207 (300)
Q Consensus       131 s-~svLRG~~vsYReVLldVckkLkV~~s~klsT~dLEaEIFLhLL~~~ss~~~g~~~~aWekm~~~~e~~sL~~~lq  207 (300)
                      + +|+|||+||+|||||+||||||||||++++||++||+|||+|++++           +|+||+++ |+++|+..++
T Consensus        77 t~~n~lRG~Gv~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~-----------a~~kms~e-E~~~L~~~l~  142 (237)
T PRK10236         77 SIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN-----------TWKKMDEE-HKQEFLHAVD  142 (237)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH-----------HHHHCCHH-HHHHHHHHHh
Confidence            9 5799999999999999999999999999999999999999999999           99999999 9999999999

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.77  E-value=4e-20  Score=166.78  Aligned_cols=88  Identities=15%  Similarity=0.287  Sum_probs=78.6

Q ss_pred             cCCc-chhHHhhhhHHHHHHHHHHHHHHhhhccch-hhhhcCCCchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHH
Q 022273           98 RADV-DYVMIEQDLEEREDFIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLL  175 (300)
Q Consensus        98 r~~~-Dy~~i~~~~q~R~~~i~~IEsRFqfLAADs-~svLRG~~vsYReVLldVckkLkV~~s~klsT~dLEaEIFLhLL  175 (300)
                      |++. ||.+          |++.|++++|++++|+ ++.|||.|+.||+||+|+|||||++|+++++|.+||++++++++
T Consensus        14 r~g~~~~~k----------y~k~ia~elq~~gg~s~anflr~~G~lyk~il~d~~~~Lk~k~~k~~~tt~Iee~ll~~il   83 (211)
T COG4735          14 REGLIQVCK----------YLKRIAEELQTTGGLSAANFLRDLGQLYKKILCDEKDKLKVKVQKELGTTEIEEPLLLQIL   83 (211)
T ss_pred             HhhHHHHHH----------HHHhhHHHHHHhccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence            5555 6666          8999999999999999 79999999999999999999999999999999999999999999


Q ss_pred             hhhhccccCCCCCCcccCCchhhhhHHHhhhh
Q 022273          176 QEYASEESGVFPGSWENSEASDAQNSLELGLS  207 (300)
Q Consensus       176 ~~~ss~~~g~~~~aWekm~~~~e~~sL~~~lq  207 (300)
                      ++           +|+||+.. +.+.+.+.+.
T Consensus        84 ~~-----------~l~km~~~-~~~e~~~~l~  103 (211)
T COG4735          84 RN-----------PLEKMLKG-GKAEAVDSLD  103 (211)
T ss_pred             Hh-----------HHHHHhHH-HHHHHHHHhc
Confidence            99           99999887 6665555444

>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.87  E-value=5.6e-06  Score=75.86  Aligned_cols=127  Identities=20%  Similarity=0.227  Sum_probs=117.4

Q ss_pred             hhhhcCC--CchHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCCcccCCchhhhhHHHhhhhhh
Q 022273          132 RSTLRGW--RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQW  209 (300)
Q Consensus       132 ~svLRG~--~vsYReVLldVckkLkV~~s~klsT~dLEaEIFLhLL~~~ss~~~g~~~~aWekm~~~~e~~sL~~~lq~w  209 (300)
                      +|++||+  ..+||+-++||||+++++|..-..|-++|.++|+|.+++           .|++.+.+ +.+.|...++  
T Consensus         1 lt~~l~~~~~~k~r~g~~~~~ky~k~ia~elq~~gg~s~anflr~~G~-----------lyk~il~d-~~~~Lk~k~~--   66 (211)
T COG4735           1 LTVLLGRSEQFKYREGLIQVCKYLKRIAEELQTTGGLSAANFLRDLGQ-----------LYKKILCD-EKDKLKVKVQ--   66 (211)
T ss_pred             CchhhccchhhHHHhhHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH-----------HHHHcCHH-HHHHHHHHHH--
Confidence            4778887  999999999999999999999999999999999999999           99999998 8899999899  


Q ss_pred             HHHHhhhhccCc-------hhHHHHHHhccceeehHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHhhhhccccc
Q 022273          210 KVQALAAFNAGA-------VELKSMMLKGGGIYTLVKIYQ-LLMRNLSGKFFLEAANYQIKKEVLKKVVDNWLP  275 (300)
Q Consensus       210 ~~~~la~~klg~-------~ell~llLKGGsalavssi~~-~l~kqla~q~al~~A~YQ~ake~l~~Gg~~~~~  275 (300)
                        +.++.+.+.+       +|++..++|||++.+++++.. .+.+ |.+|+.+|+|.||+||.+..+|+...+-
T Consensus        67 --k~~~tt~Iee~ll~~il~~~l~km~~~~~~e~~~~l~~~~v~~-i~e~~~vl~a~~l~ak~~~~~~S~qla~  137 (211)
T COG4735          67 --KELGTTEIEEPLLLQILRNPLEKMLKGGKAEAVDSLDAPNVLE-IEEQLQVLIADYLVAKKALGKGSYQLAV  137 (211)
T ss_pred             --HhhccccccchhHHHHHHhHHHHHhHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence              7788888877       999999999999999999999 6777 9999999999999999999999876653

>PF13099 DUF3944: Domain of unknown function (DUF3944)

Probab=96.23  E-value=0.0048  Score=42.84  Aligned_cols=30  Identities=17%  Similarity=0.018  Sum_probs=25.2

Q ss_pred             ChHHHHHHHhhChHHHHHHHHHhcCCCCCC
Q 022273           60 DPELRSVLELATDSELYELERILFGPSYFS   89 (300)
Q Consensus        60 ddELr~~LELATdEEL~eLt~ILf~~s~fs   89 (300)
                      -|+..+||..|++|+|.+|++||+.-+-.+
T Consensus         3 ~D~DLeFL~~cs~edL~~L~~~Lt~dkdG~   32 (35)
T PF13099_consen    3 YDSDLEFLAECSNEDLKDLVDILTHDKDGK   32 (35)
T ss_pred             cCcchHHHHHCCHHHHHHHHHHHhcCCCCC
Confidence            367789999999999999999999655343

>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end

Probab=81.11  E-value=2.4  Score=37.73  Aligned_cols=31  Identities=45%  Similarity=0.549  Sum_probs=27.1

Q ss_pred             cCCCCCCChHHHHHHHhhChHHHHHHHHHhc
Q 022273           53 SKGQGAFDPELRSVLELATDSELYELERILF   83 (300)
Q Consensus        53 ~~~~~~~ddELr~~LELATdEEL~eLt~ILf   83 (300)
                      ....-..++||.++|.-|||+||.+|+.||-
T Consensus       109 ~ee~v~ldpeleeaL~~Atd~El~dlAaILG  139 (147)
T PF03250_consen  109 KEEQVTLDPELEEALSNATDAELCDLAAILG  139 (147)
T ss_pred             cccccccCHHHHHHHhcCcHHHHHHHHHHHh
Confidence            3345678899999999999999999999995

To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 52/343 (15%), Positives = 97/343 (28%), Gaps = 108/343 (31%)

Query: 1   MAVATATFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVA--LSSKGQGA 58
           +A+       +Q      F +     L   N +SP   + +       +    +S+   +
Sbjct: 166 VALDVCLSYKVQCKM--DFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 59  FDPELRSVLELATDSELYELERILFGPSYFSPLL-----------KSF---------TKR 98
            + +LR        S   EL R+L    Y + LL            +F         T+ 
Sbjct: 221 SNIKLR------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 99  ADV-DYV----MIEQDLEEREDFIASLESRFLF----------LAADARST--------- 134
             V D++         L+     +   E + L           L  +  +T         
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 135 --LRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGS--- 189
             +R    ++ N        L      + S   LE   +  +    +     VFP S   
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLS-----VFPPSAHI 387

Query: 190 --------WENSEASDAQNSLELGLSQWKVQALAAFNAGAVEL--KSMMLKGG--GIYTL 237
                   W +   SD    +                    +L   S++ K       ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVN-------------------KLHKYSLVEKQPKESTISI 428

Query: 238 VKIYQLLMRNLSGKFFLEA---ANYQIKK-----EVLKKVVDN 272
             IY  L   L  ++ L      +Y I K     +++   +D 
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 35/248 (14%), Positives = 79/248 (31%), Gaps = 82/248 (33%)

Query: 91  LLKSFTKRADVDYVMIEQDLEEREDFI--------ASLESRFL---------FLAADARS 133
           + KS   + ++D++++ +D       +          +  +F+         FL +  ++
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 134 TLRGWRPS--------YRNVLLAVRKNLNIPCSSK-LSTEDLEAEIFLHLLQEYASEESG 184
             R   PS         R+ L     N N   +   +S      ++   LL+        
Sbjct: 101 EQRQ--PSMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKN 152

Query: 185 VF----PGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIY----- 235
           V      GS               G    K   +A     + +++  M     I+     
Sbjct: 153 VLIDGVLGS---------------G----K-TWVALDVCLSYKVQCKM--DFKIFWLNLK 190

Query: 236 ------TLVKIYQLLMRNLSGKFFLEA---ANYQIKKEVLKKVVDNWLPLIWSPEQPCLQ 286
                 T++++ Q L+  +   +   +   +N +++   ++  +     L+ S       
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LLKSKPYE--- 244

Query: 287 QSRALLVL 294
               LLVL
Sbjct: 245 --NCLLVL 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00