Citrus Sinensis ID: 022277

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MAPLCLNSSFLPSSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVMLKHIWMRFYSAKN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccEEccHHHHHHHHHccccHHHHcccccccEEEEEcccccEEEEEccccccccccEEEEEHHHHHHHHHHccccccEEccccEEEEEEccccEEEEEEccccEEEccEEEEcccccHHHHccccccccEEEcEEEEEEEEEccccccccccEEEEEEccEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccHHHHccccccccccccccEEEEEccccccEEEEEEEccccccccccEEEEccHHHHHHHHHHHHHccccEEEEEccHHHHHcccHEEccHHHHHHHHHcccHHHHHHHccccccEEEEcccccEEEEcccccccccccEEEEEHHHHHHHHHHHccccEEEEccEEEEEEEccccEEEEEEccccEEEEEEEEEccccHHHHHHHHcccccccccEEEEEEEEEccccccccccEEEEEccccEEEEEEccccEEEEEEEEcccccccccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
maplclnssflpsslhylhsrsfhcpqsssgfcfqtrtRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAdslrtggtsltlfknGWSVLDALGVGSDLRSQFLEIKgmavksedgrelrsfgfkdedaSQEVRAVERRILLETLanqlppesvqfSSELAKIETSGNGVTILELVNGTRIYANIvigcdgirspiakwigfsepkyvghcayrglgyypngqpfepklnyiygrgvragyvpvsptkVYWFichnnptpgYLALVMLKHIWMRFYSAKN
Flexible Loop (DISEMBL)
MAPLCLNSSFLPSSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAkaeadvrkedIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKgmavksedgrelrsfgfkdedasqeVRAVERRILLEtlanqlppesVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVMLKHIWMRFYSAKN
Low Complexity Region (SEG)
MAPLCLNSSFLPSSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVMLKHIWMRFYSAKN
Disordered region (IsUnstruct)
*********FLPSSLHYLHSRSFHCPQSSSGFCFQTRT****KAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMA*************************VERRILLETLA*************LAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVMLKHIWMRFY****
Disordered Region (DISOPRED)
*************************************************************VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG***LVMLKHIWMRF*****
Disordered Region (DISEMBL)
MAPLCLNSSFLPSSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVMLKHIWMRFYSAKN
Disordered Region (DISPRO)
****C****FLPSSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVMLKHIWMRFYSAK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPLCLNSSFLPSSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVMLKHIWMRFYSAKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
B6D1N4	384	FAD-dependent urate hydro	yes	no	0.733	0.572	0.258	1e-13
A6T923	384	FAD-dependent urate hydro	yes	no	0.733	0.572	0.258	1e-13
Q9F131	394	3-hydroxybenzoate 6-hydro	N/A	no	0.71	0.540	0.280	1e-09
Q9FGC7	667	Zeaxanthin epoxidase, chl	no	no	0.89	0.400	0.241	1e-07
Q53552	435	Salicylate hydroxylase OS	no	no	0.57	0.393	0.275	1e-07
Q5EXK1	397	3-hydroxybenzoate 6-hydro	yes	no	0.543	0.410	0.280	1e-07
P93236	669	Zeaxanthin epoxidase, chl	N/A	no	0.743	0.333	0.251	4e-07
Q11058	372	Uncharacterized protein R	yes	no	0.65	0.524	0.234	1e-06
Q40412	663	Zeaxanthin epoxidase, chl	N/A	no	0.873	0.395	0.233	3e-06
B5B0J6	384	FAD-dependent urate hydro	no	no	0.703	0.549	0.237	5e-06

>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 8/228 (3%)

Query: 62  VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
           +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG   +  LG+G  + +
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 122 QFLEIKGMAVKS-EDGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPESVQFSS 178
               ++ MA +    G  +  F      E        V R  L   + +    +SVQF  
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query: 179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS-EPKYVGHCAYRGL 236
            + + E   +GVT+    +G+    +++I  DG  S +  W+ GF+ + +Y G+  + GL
Sbjct: 124 RVTRCEEDADGVTVW-FTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGL 182

Query: 237 GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLA 284
                      +     G G R   +PVS  + Y+F   + P P  LA
Sbjct: 183 VEIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFF--DVPLPAGLA 228

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.
Klebsiella pneumoniae (taxid: 573)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: 3

>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 8/228 (3%)

Query: 62  VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
           +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG   +  LG+G  + +
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 122 QFLEIKGMAVKS-EDGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPESVQFSS 178
               ++ MA +    G  +  F      E        V R  L   + +    +SVQF  
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query: 179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS-EPKYVGHCAYRGL 236
            + + E   +GVT+    +G+    +++I  DG  S +  W+ GF+ + +Y G+  + GL
Sbjct: 124 RVTRCEEDADGVTVW-FTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGL 182

Query: 237 GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLA 284
                      +     G G R   +PVS  + Y+F   + P P  LA
Sbjct: 183 VEIDEALAPGDQWTTFVGEGKRVSLMPVSAGRFYFFF--DVPLPAGLA 228

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 19/232 (8%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           +I+I GAGI GL+ A+ L R G+ S+V+E+A  L   G  + L  N +  LDALG+G   
Sbjct: 4   NILIAGAGIGGLSAALGLARKGMRSIVLEKAPELGEIGAGIQLAPNAYHALDALGIGEVA 63

Query: 120 R------SQFLEIKGMAVKS----EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL 169
           R       + L + GM  K           R F F +  A   +   +   LL    ++ 
Sbjct: 64  RQTGVHVDKLLWMDGMTDKEIASVPLANRFREF-FGNPYAV--IHRADFHGLLVEACHKT 120

Query: 170 PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIGFSEPKYV 228
               V+ ++E+   E   + V  + L +G+ I   +++G DG+ S +  K IG  +P+  
Sbjct: 121 GLVEVRTNAEVVDYENFPDRVEAI-LHDGSCINGAVLVGADGLWSNVRQKVIGDGDPRVS 179

Query: 229 GHCAYRGLGYYPNGQPFEPKLNY---IYGRGVRAGYVPVSPTKVYWFICHNN 277
           GH  YR +       P E + N      G G    + P+   KV+  +  +N
Sbjct: 180 GHTTYRSV-IPAEDMPEELRWNMSTAWAGEGCHMVHYPLKGGKVFNLVLTSN 230

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. The affinity of the enzyme toward NAD is twice as high as for NADP. The enzyme shows higher specific activities against the intermediates in the degradation of 2,5-xylenol and 3,5-xylenol, 3-hydroxy-4-methylbenzoate and 3-hydroxy-5-methylbenzoate, respectively, than for 3-hydroxybenzoate. It also shows activity against 3-substituted benzoates.

Pseudomonas alcaligenes (taxid: 43263)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|Q9FGC7|ZEP_ARATH Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 128/323 (39%), Gaps = 56/323 (17%)

Query: 3   PLCLNSSFLPSSLHYLH-------SRSFHCPQSS--------SGFCFQTRTRSRSKAIRL 47
           P C + +  PS L +         S+ F+   SS        SGF        RS+   L
Sbjct: 5   PFCYSINPSPSKLDFTRTHVFSPVSKQFYLDLSSFSGKPGGVSGF--------RSRRALL 56

Query: 48  SIAKAEADVRKED-------------IVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSL 93
            +  A A V KE+             +++ G GI GL  A++ ++ G   LV E+   ++
Sbjct: 57  GVKAATALVEKEEKREAVTEKKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAI 116

Query: 94  RTGGT---SLTLFKNGWSVLDALGVGSDLRSQFLE--------IKGMAVKSEDGRELRSF 142
           R  G     + +  N  + L+A+ +  ++  Q +E        I G+ V    G     F
Sbjct: 117 RGEGKYRGPIQIQSNALAALEAIDI--EVAEQVMEAGCITGDRINGL-VDGISGTWYVKF 173

Query: 143 GFKDEDASQEV---RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT 199
                 AS+ +   R + R  L + LA  +  + ++  S +   E SG+ VT++ L NG 
Sbjct: 174 DTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVV-LENGQ 232

Query: 200 RIYANIVIGCDGIRSPI-AKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVR 258
           R   ++++G DGI S +     G SE  Y G+  Y G+  +              G    
Sbjct: 233 RYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQY 292

Query: 259 AGYVPVSPTKVYWFICHNNPTPG 281
                V   K+ W+  H  P  G
Sbjct: 293 FVSSDVGGGKMQWYAFHEEPAGG 315

Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, ABA-dependent stomatal closure, seed development and dormancy, modulation of defense gene expression and disease resistance and non-photochemical quencing (NPQ). Through its role in ABA biosynthesis, regulates the expression of stress-responsive genes such as RD29A during osmotic stress and is required for normal plant growth during vegetative development. Is required for late skotomorphogenic growth through its role in the xanthophyll carotenoids neoxanthin, violaxanthin and antheraxanthin biosynthesis. Required for beta-aminobutyric acid (BABA)-induced priming in disease resistance, tolerance to salt and drought stresses and sterility. Participates in NPQ by regulating the level of zeaxanthin in photosynthetic energy conversion. NPQ is a process that maintains the balance between dissipation and utilization of light energy to minimize the generation of oxidizing molecules and the molecular damages they can generate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|Q53552|NHG2_PSEPU Salicylate hydroxylase OS=Pseudomonas putida GN=nahG PE=4 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 18/189 (9%)

Query: 61  IVIVGAGIAGLATAVSL-QRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVG--- 116
           + IVG GI+GLA A+SL +   +   + E A +    G  ++   N    +  LG+G   
Sbjct: 13  VAIVGGGISGLALALSLCKHSHLNVQLFEAAPAFGEVGAGVSFGPNAVRAIVGLGLGQAY 72

Query: 117 ---SDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPES 173
              +D   Q  E   +  +   G +    G       Q   +V R   L+ L   LP   
Sbjct: 73  FQVADRTPQPWE--DIWFEWRRGSDASYLGATIAGVGQS--SVHRADFLDALVKHLPEGI 128

Query: 174 VQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI------GFSEPKY 227
            QF     +IE  G+ + +L   +GT    +++IG DGI+S +  ++         EP++
Sbjct: 129 AQFRKRATQIEQQGDELQVL-FRDGTEYRCDLLIGRDGIKSALRSYVLEGQGQDHLEPRF 187

Query: 228 VGHCAYRGL 236
            G CAYRG+
Sbjct: 188 SGTCAYRGM 196

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

>sp|Q5EXK1|3HBH_KLEOX 3-hydroxybenzoate 6-hydroxylase OS=Klebsiella oxytoca GN=mhbM PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 73  TAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ--FLEIKGM- 129
           TA+SL R GI  +++E+A  +   G  + L  N +S LD+LGVG   R +  F +   M 
Sbjct: 19  TALSLARQGIKVMLLEKAHEIGEIGAGIQLGPNAFSALDSLGVGEVARQRAVFTDHITMM 78

Query: 130 -AVKSEDGRELRS-FGFKDEDAS--QEVRAVERRILLETLANQLPPESVQFSSELAKIET 185
            AV  E+   + +   F+D        +  V+    +   A   P    + S+++  I  
Sbjct: 79  DAVNGEEVVHIETGQAFRDHFGGPYAVIHRVDIHATVWEAALTHPAVEYRTSTQVVDIRQ 138

Query: 186 SGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGL 236
           + + VT+ +   G    A+I+IGCDG +S + + +    P+  GH  YR +
Sbjct: 139 TADDVTVFD-DKGNSWTADILIGCDGGKSVVRQSLLGDSPRVTGHVVYRAV 188

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. NAD and NADP function equally well.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|P93236|ABA2_SOLLC Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 98/239 (41%), Gaps = 16/239 (6%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGT---SLTLFKNGWSVLDA 112
           +K  +++ G GI GL  A++ ++ G   LV E+   ++R  G     + +  N  + L+A
Sbjct: 84  KKLKVLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEA 143

Query: 113 --LGVGSDLRSQFL----EIKGMAVKSEDGR---ELRSFGFKDEDASQEVRAVERRILLE 163
             L V  D+ +        I G+ V    G    +  +F    E      R + R  L +
Sbjct: 144 IDLDVAEDIMNAGCITGQRINGL-VDGISGNWYCKFDTFTPAVERGLPVTRVISRMTLQQ 202

Query: 164 TLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIGF 222
            LA  +  E +   S +   E  G  VT++ L NG R   ++++G DGIRS +     G 
Sbjct: 203 ILARAVGEEIIMNESNVVDFEDDGEKVTVV-LENGQRFTGDLLVGADGIRSKVRTNLFGP 261

Query: 223 SEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG 281
           SE  Y G+  Y G+  +              G         V   K+ W+  +N P  G
Sbjct: 262 SEATYSGYTCYTGIADFVPADIDTVGYRVFLGHKQYFVSSDVGGGKMQWYAFYNEPAGG 320

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin. Plays an important role in resistance to stresses, seed development and dormancy.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|Q11058|Y1260_MYCTU Uncharacterized protein Rv1260/MT1298 OS=Mycobacterium tuberculosis GN=Rv1260 PE=4 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 14/209 (6%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLR 120
           +V+ GA +AG A A  L R G    ++E+   LR GG ++ +      VL+ +G+ +  +
Sbjct: 4   VVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQ 63

Query: 121 SQFLEIKGMAVKSEDGRELRSFGFKDEDASQE---VRAVERRILLETLANQL-----PPE 172
                I+G +    DG EL    F+D +++     V + +  +L + L   L     P  
Sbjct: 64  EHKTRIRGASFVDRDGNEL----FRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSV 119

Query: 173 SVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHC- 231
              F   ++ ++  G+ V +       R + ++VIG DG+ S + + +   E ++V    
Sbjct: 120 EYLFDDSISTLQDDGDSVRVTFERAAAREF-DLVIGADGLHSNVRRLVFGPEEQFVKRLG 178

Query: 232 AYRGLGYYPNGQPFEPKLNYIYGRGVRAG 260
            +  +   PN    +    + YG    AG
Sbjct: 179 THAAIFTVPNFLELDYWQTWHYGDSTMAG 207

Mycobacterium tuberculosis (taxid: 1773)

>sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 126/309 (40%), Gaps = 47/309 (15%)

Query: 3   PLCLNSSFLPSSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADV------ 56
           PL ++  F P+ L++    S  C +S        + +     ++ +IA+A A +      
Sbjct: 23  PLLISKDF-PTELYH----SLPCSRSLE----NGQIKKVKGVVKATIAEAPATIPPTDLK 73

Query: 57  ----RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGT---SLTLFKNGWS 108
               +K  +++ G GI GL  A++ ++ G   LV E+   ++R  G     + +  N  +
Sbjct: 74  KVPQKKLKVLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALA 133

Query: 109 VLDA--LGVGSDLRSQFL----EIKGMAVKSEDGR---ELRSFGFKDEDASQEVRAVERR 159
            L+A  + V  D+ +        I G+ V    G    +  +F    E      R + R 
Sbjct: 134 ALEAIDMDVAEDIMNAGCITGQRINGL-VDGVSGNWYCKFDTFTPAVERGLPVTRVISRM 192

Query: 160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AK 218
            L + LA  +  + +   S +   E  G  VT+  L +G +   ++++G DGIRS +   
Sbjct: 193 TLQQNLARAVGEDIIMNESNVVNFEDDGEKVTV-TLEDGQQYTGDLLVGADGIRSKVRTN 251

Query: 219 WIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGY------VPVSPTKVYWF 272
             G S+  Y G+  Y G+        F P      G  V  G+        V   K+ W+
Sbjct: 252 LFGPSDVTYSGYTCYTGIA------DFVPADIETVGYRVFLGHKQYFVSSDVGGGKMQWY 305

Query: 273 ICHNNPTPG 281
             HN P  G
Sbjct: 306 AFHNEPAGG 314

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin. Plays an important role in resistance to stresses, seed development and dormancy.

Nicotiana plumbaginifolia (taxid: 4092)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|B5B0J6|HPXO_KLEOX FAD-dependent urate hydroxylase OS=Klebsiella oxytoca GN=hpxO PE=3 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 8/219 (3%)

Query: 71  LATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMA 130
           L+ AV L+  GI   V E    ++  G +++++ NG   +  LG+G  + S    +  +A
Sbjct: 13  LSAAVGLKNAGIHCEVFEAVKEIKPVGAAISIWPNGVKCMKHLGMGDIIESYGGPMHFLA 72

Query: 131 VKSE-DGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSG 187
            K    G +L  F      E        V    L   + +    ++VQF   + + E   
Sbjct: 73  YKDYLRGEDLTQFSLAPLVERTGGRPCPVPALNLQREMLDFWGRDAVQFGKRVTRCEEHA 132

Query: 188 NGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS-EPKYVGHCAYRGLGYYPNGQPF 245
           +GV +    +G+    + +I  DG  S +  ++ G++ E +Y G+  + GL         
Sbjct: 133 DGVRVW-FTDGSMAEGDFLIAADGSHSALRPYVLGYTPERRYAGYVNWNGLVEIDEAIAP 191

Query: 246 EPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLA 284
             +     G G R   +PVS  + Y+F   + P P  LA
Sbjct: 192 GNQWTTFVGEGKRVSLMPVSDGRFYFFF--DVPLPAGLA 228

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
359497021	451	PREDICTED: zeaxanthin epoxidase, chlorop	0.866	0.576	0.725	1e-109
255581968	452	monoxygenase, putative [Ricinus communis	0.896	0.595	0.711	1e-107
224138708	466	predicted protein [Populus trichocarpa]	0.916	0.590	0.692	1e-107
356495579	430	PREDICTED: zeaxanthin epoxidase, chlorop	0.803	0.560	0.713	1e-100
4164574	439	CTF2A [Arabidopsis thaliana]	0.826	0.564	0.705	1e-100
4164576	449	CTF2A [Arabidopsis thaliana]	0.826	0.552	0.705	1e-100
21536869	439	putative monooxygenase [Arabidopsis thal	0.826	0.564	0.701	1e-100
18403916	439	CTF2A like oxidoreductase [Arabidopsis t	0.826	0.564	0.701	1e-100
357482171	431	Zeaxanthin epoxidase [Medicago truncatul	0.776	0.540	0.721	6e-99
297823367	439	hypothetical protein ARALYDRAFT_482529 [	0.826	0.564	0.689	3e-98

>gi|359497021|ref|XP_002265622.2| PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Vitis vinifera] gi|296085721|emb|CBI29521.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/266 (72%), Positives = 227/266 (85%), Gaps = 6/266 (2%)

Query: 16  HYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAV 75
           H+L +++F   QS SG        +R+K I  S+ +A+  VRKEDI+IVGAGIAGLATAV
Sbjct: 25  HHLQAKTFPQSQSYSGVG------TRTKPISASMVEAQPPVRKEDIIIVGAGIAGLATAV 78

Query: 76  SLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED 135
           SL RLG+GSLV+EQA+SLRTGGTSLTLFKNGW VLDA+GVG+DLRSQFLEI+GM VKSED
Sbjct: 79  SLHRLGVGSLVLEQAESLRTGGTSLTLFKNGWGVLDAMGVGNDLRSQFLEIQGMVVKSED 138

Query: 136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL 195
           GRELRSF FKDED SQEVRAVERRILLETLANQLP +S+ FSS+LAKIE    G T+LEL
Sbjct: 139 GRELRSFRFKDEDESQEVRAVERRILLETLANQLPTDSIHFSSKLAKIERIETGETLLEL 198

Query: 196 VNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGR 255
            +GTR+   IVIGCDGIRSP+AKW+GFSEP+YVGHCA+RGLG++P   P+EPK+NY+YGR
Sbjct: 199 EDGTRLSGKIVIGCDGIRSPVAKWMGFSEPRYVGHCAFRGLGFFPERMPYEPKVNYVYGR 258

Query: 256 GVRAGYVPVSPTKVYWFICHNNPTPG 281
           G+RAGYVPVSPTKVYWFIC N+P+PG
Sbjct: 259 GLRAGYVPVSPTKVYWFICFNSPSPG 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581968|ref|XP_002531782.1| monoxygenase, putative [Ricinus communis] gi|223528575|gb|EEF30596.1| monoxygenase, putative [Ricinus communis]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/277 (71%), Positives = 232/277 (83%), Gaps = 8/277 (2%)

Query: 6   LNSSFLPSSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKA-EADVRKEDIVIV 64
           LNS+++ SS     +R F   QS    C  TR  S      LSI +A + D+ KEDIVIV
Sbjct: 11  LNSNYISSS-ALSKTRPFLESQSWFLTCIGTRPNS------LSITRAIKTDLSKEDIVIV 63

Query: 65  GAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL 124
           GAGI+GLATA+SLQRLGI S+V+EQ++SLRTGG SLTLFKNGW VLDALGVGSDLRSQFL
Sbjct: 64  GAGISGLATALSLQRLGIRSVVLEQSESLRTGGASLTLFKNGWRVLDALGVGSDLRSQFL 123

Query: 125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIE 184
           EI+GMAVK+EDGRELRSF FKDED SQEVRAVERRILL+TLANQLPPE+++FSS L KIE
Sbjct: 124 EIQGMAVKTEDGRELRSFRFKDEDESQEVRAVERRILLKTLANQLPPEAIRFSSGLDKIE 183

Query: 185 TSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQP 244
            S NG T+L+LVNGT++ A +VIGCDGIRSPIAKW+GF EPKY GH A+RG+G+Y NGQP
Sbjct: 184 KSENGETVLKLVNGTQLLAKVVIGCDGIRSPIAKWMGFPEPKYAGHSAFRGIGFYDNGQP 243

Query: 245 FEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG 281
           FEP++NY+YGRG+RAGYVPVSPTKVYWFIC+N+ +PG
Sbjct: 244 FEPRVNYVYGRGLRAGYVPVSPTKVYWFICYNSQSPG 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138708|ref|XP_002326670.1| predicted protein [Populus trichocarpa] gi|222833992|gb|EEE72469.1| predicted protein [Populus trichocarpa]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/283 (69%), Positives = 232/283 (81%), Gaps = 8/283 (2%)

Query: 7   NSSFLPSSLHYLHSRSFH-CPQSSSGFCFQTR---TRSRSKAIR-LSIAKAEA---DVRK 58
           ++S L    H L + S H  P  +  F  +      R+R+K    LS+ +A+    DV +
Sbjct: 5   SASLLSLDSHVLSASSLHRSPHRARPFSRRKSWLLVRARNKKTNSLSVIEAKISTDDVSE 64

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           EDIVIVGAGIAGLATAVSLQRLG+ SLV+EQA+SLRTGGTSLTLFKNGW VLDA+GVGSD
Sbjct: 65  EDIVIVGAGIAGLATAVSLQRLGVRSLVLEQAESLRTGGTSLTLFKNGWRVLDAIGVGSD 124

Query: 119 LRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSS 178
           LRSQFLEI+GM VKS+DGRELRSF FKDED SQEVRAVER+ILLETLA +LP  +VQFSS
Sbjct: 125 LRSQFLEIQGMVVKSDDGRELRSFTFKDEDESQEVRAVERKILLETLAIKLPSAAVQFSS 184

Query: 179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGY 238
            LA++E   NG  +LELV+GTR+ A IVIGCDGIRSP+AKW+GFSEP+YVGHCA+RGLG+
Sbjct: 185 GLARMERRENGKMLLELVDGTRLLAKIVIGCDGIRSPVAKWMGFSEPRYVGHCAFRGLGF 244

Query: 239 YPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG 281
           Y NGQPFEP++NY+YGRG+RAGYVPVSPTKVYWFIC N+P+PG
Sbjct: 245 YANGQPFEPRVNYVYGRGLRAGYVPVSPTKVYWFICFNSPSPG 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495579|ref|XP_003516652.1| PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/244 (71%), Positives = 212/244 (86%), Gaps = 3/244 (1%)

Query: 38  TRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG 97
           TR   KAI+   A+++ DVR+E +V+VGAGIAGLATA+SL RLG+ SLV+EQA SLRTGG
Sbjct: 23  TRRSYKAIK---AQSQTDVREEQVVVVGAGIAGLATALSLHRLGVRSLVLEQAQSLRTGG 79

Query: 98  TSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVE 157
           TSLTLFKNGW VLDA+GV +DLR+QFLEI+GM VKS DGRELR+F FK ED SQEVRAVE
Sbjct: 80  TSLTLFKNGWRVLDAIGVANDLRTQFLEIQGMVVKSVDGRELRAFNFKQEDPSQEVRAVE 139

Query: 158 RRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA 217
           RR+LLETLA+QLP +++Q+SS+L +IE + NG T+LELV+G+++ A IVIGCDGIRSPIA
Sbjct: 140 RRVLLETLASQLPRDTIQYSSQLQRIEATPNGDTLLELVDGSKLLAKIVIGCDGIRSPIA 199

Query: 218 KWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277
           KW+GF EPKYVGHCA+RGL  Y +GQPF P++NYIYGRG+RAG+VPVSPTKVYWFIC N+
Sbjct: 200 KWMGFPEPKYVGHCAFRGLASYSDGQPFGPRVNYIYGRGLRAGFVPVSPTKVYWFICFNS 259

Query: 278 PTPG 281
           P+ G
Sbjct: 260 PSAG 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4164574|gb|AAD09951.1| CTF2A [Arabidopsis thaliana]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/248 (70%), Positives = 210/248 (84%)

Query: 34  FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93
           F  RTRS+   + L+ A+     ++E +VIVGAGI GLATAVSL RLGI S+V+EQA+SL
Sbjct: 20  FPIRTRSKPVCLALTNAQTNGGDQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESL 79

Query: 94  RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEV 153
           RTGGTSLTLFKNGW VLDA+ VG  LR QFLEI+GM VK EDGRELRSF FKDED SQEV
Sbjct: 80  RTGGTSLTLFKNGWRVLDAISVGPQLRKQFLEIEGMVVKKEDGRELRSFKFKDEDQSQEV 139

Query: 154 RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213
           RAVERR+LLETLA+QLPP++++FSS+L  I+++ NG T+L+L +GTR+ A IVIGCDGIR
Sbjct: 140 RAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLLAKIVIGCDGIR 199

Query: 214 SPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273
           S +A W+GFSEPKYVGHCAYRGLG+YPNGQPF+ K+NYIYG+G+RAGYVPVS TKVYWFI
Sbjct: 200 SKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGLRAGYVPVSATKVYWFI 259

Query: 274 CHNNPTPG 281
           C N+P+ G
Sbjct: 260 CFNSPSLG 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4164576|gb|AAD08696.1| CTF2A [Arabidopsis thaliana]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/248 (70%), Positives = 210/248 (84%)

Query: 34  FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93
           F  RTRS+   + L+ A+     ++E +VIVGAGI GLATAVSL RLGI S+V+EQA+SL
Sbjct: 30  FPIRTRSKPVCLALTNAQTNGGDQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESL 89

Query: 94  RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEV 153
           RTGGTSLTLFKNGW VLDA+ VG  LR QFLEI+GM VK EDGRELRSF FKDED SQEV
Sbjct: 90  RTGGTSLTLFKNGWRVLDAISVGPQLRKQFLEIEGMVVKKEDGRELRSFKFKDEDQSQEV 149

Query: 154 RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213
           RAVERR+LLETLA+QLPP++++FSS+L  I+++ NG T+L+L +GTR+ A IVIGCDGIR
Sbjct: 150 RAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLLAKIVIGCDGIR 209

Query: 214 SPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273
           S +A W+GFSEPKYVGHCAYRGLG+YPNGQPF+ K+NYIYG+G+RAGYVPVS TKVYWFI
Sbjct: 210 SKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGLRAGYVPVSATKVYWFI 269

Query: 274 CHNNPTPG 281
           C N+P+ G
Sbjct: 270 CFNSPSLG 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536869|gb|AAM61201.1| putative monooxygenase [Arabidopsis thaliana]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/248 (70%), Positives = 211/248 (85%)

Query: 34  FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93
           F  RTRS+   + L+ A+     ++E +VIVGAGI GLATAVSL RLGI S+V+EQA+SL
Sbjct: 20  FPVRTRSKPVCLALTNAQTNGGDQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESL 79

Query: 94  RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEV 153
           RTGGTSLTLFKNGW VLDA+ VG  LR+QFLEI+GM VK EDGRELRSF FKD+D SQEV
Sbjct: 80  RTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGRELRSFKFKDDDQSQEV 139

Query: 154 RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213
           RAVERR+LLETLA+QLPP++++FSS+L  I+++ NG T+L+L +GTR+ A IVIGCDGIR
Sbjct: 140 RAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLLAQIVIGCDGIR 199

Query: 214 SPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273
           S +A W+GFSEPKYVGHCAYRGLG+YPNGQPF+ K+NYIYG+G+RAGYVPVS TKVYWFI
Sbjct: 200 SKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGIRAGYVPVSTTKVYWFI 259

Query: 274 CHNNPTPG 281
           C N+P+ G
Sbjct: 260 CFNSPSLG 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403916|ref|NP_565814.1| CTF2A like oxidoreductase [Arabidopsis thaliana] gi|20197535|gb|AAD15449.2| putative monooxygenase [Arabidopsis thaliana] gi|330254043|gb|AEC09137.1| CTF2A like oxidoreductase [Arabidopsis thaliana]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/248 (70%), Positives = 211/248 (85%)

Query: 34  FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93
           F  RTRS+   + L+ A+     ++E +VIVGAGI GLATAVSL RLGI S+V+EQA+SL
Sbjct: 20  FPIRTRSKPVCLALTNAQTNGGDQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESL 79

Query: 94  RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEV 153
           RTGGTSLTLFKNGW VLDA+ VG  LR+QFLEI+GM VK EDGRELRSF FKD+D SQEV
Sbjct: 80  RTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGRELRSFKFKDDDQSQEV 139

Query: 154 RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213
           RAVERR+LLETLA+QLPP++++FSS+L  I+++ NG T+L+L +GTR+ A IVIGCDGIR
Sbjct: 140 RAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLLAQIVIGCDGIR 199

Query: 214 SPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273
           S +A W+GFSEPKYVGHCAYRGLG+YPNGQPF+ K+NYIYG+G+RAGYVPVS TKVYWFI
Sbjct: 200 SKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGIRAGYVPVSTTKVYWFI 259

Query: 274 CHNNPTPG 281
           C N+P+ G
Sbjct: 260 CFNSPSLG 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482171|ref|XP_003611371.1| Zeaxanthin epoxidase [Medicago truncatula] gi|355512706|gb|AES94329.1| Zeaxanthin epoxidase [Medicago truncatula]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 168/233 (72%), Positives = 207/233 (88%)

Query: 49  IAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWS 108
           + K ++ V+KE +VIVG GIAGLATA+SL RLG+ SLV+EQ++SLRTGGTSLTLFKNGWS
Sbjct: 30  LIKVQSSVQKEHVVIVGGGIAGLATALSLHRLGVRSLVLEQSESLRTGGTSLTLFKNGWS 89

Query: 109 VLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQ 168
           VLD++GV + LR+Q+LEI+GM VKSEDGRELR+F FK+ED SQEVRAVERR+LLETLA Q
Sbjct: 90  VLDSIGVANYLRTQYLEIQGMVVKSEDGRELRAFNFKEEDESQEVRAVERRVLLETLAAQ 149

Query: 169 LPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           LPP+S+Q+SS L KIE S NG T+LE ++G+++ A IVIGCDGIRSPIAKW+GFSEPK+V
Sbjct: 150 LPPDSIQYSSRLVKIEPSPNGDTLLEFLDGSKLVAKIVIGCDGIRSPIAKWMGFSEPKFV 209

Query: 229 GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG 281
           GHCA+RGL  Y +GQPF+P++NYIYG+G+RAGYVPVSPTKVYWFIC N+ +PG
Sbjct: 210 GHCAFRGLASYSDGQPFQPRVNYIYGKGLRAGYVPVSPTKVYWFICFNSSSPG 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823367|ref|XP_002879566.1| hypothetical protein ARALYDRAFT_482529 [Arabidopsis lyrata subsp. lyrata] gi|297325405|gb|EFH55825.1| hypothetical protein ARALYDRAFT_482529 [Arabidopsis lyrata subsp. lyrata]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/248 (68%), Positives = 208/248 (83%)

Query: 34  FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93
           F  RTRS+   + L+ A+     ++E++VIVGAGI GL TAVSL RLGI S+V+EQ +SL
Sbjct: 20  FPVRTRSKPVCLALTNAQTNGGDQEENVVIVGAGIGGLTTAVSLHRLGIRSVVLEQVESL 79

Query: 94  RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEV 153
           RTGGTSLTLFKNGW VLDA+ VG  LR QFLEI+GM VK+EDGRELRSF FKDED SQEV
Sbjct: 80  RTGGTSLTLFKNGWRVLDAISVGPQLRPQFLEIEGMVVKNEDGRELRSFKFKDEDQSQEV 139

Query: 154 RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213
           RAVERR+LLETLA+QLPP+++QFSS+L  I+++ NG T+L+L +GTR+   IVIGCDGIR
Sbjct: 140 RAVERRVLLETLASQLPPQTIQFSSKLESIQSNANGDTLLQLGDGTRLLGQIVIGCDGIR 199

Query: 214 SPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273
           S +A W+GFSEPKYVGHCA+RGLG++PNGQPF+ K+NYIYG+G+RAGYVPVS TKVYWFI
Sbjct: 200 SKVATWMGFSEPKYVGHCAFRGLGFFPNGQPFQNKVNYIYGKGLRAGYVPVSATKVYWFI 259

Query: 274 CHNNPTPG 281
           C N P+ G
Sbjct: 260 CFNRPSLG 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2058723	439	CTF2A "AT2G35660" [Arabidopsis	0.826	0.564	0.701	1.6e-93
TAIR|locus:2060584	427	CTF2B "AT2G29720" [Arabidopsis	0.826	0.580	0.649	4.3e-86
TAIR|locus:2121254	407	AT4G38540 "AT4G38540" [Arabido	0.72	0.530	0.401	1.7e-41
TAIR|locus:2153499	406	AT5G05320 "AT5G05320" [Arabido	0.723	0.534	0.381	3.6e-41
TAIR|locus:2130694	422	MO1 "monooxygenase 1" [Arabido	0.7	0.497	0.376	7.7e-32
UNIPROTKB|A6T923	384	hpxO "FAD-dependent urate hydr	0.73	0.570	0.262	1.8e-15
UNIPROTKB|B6D1N4	384	hpxO "FAD-dependent urate hydr	0.73	0.570	0.262	1.8e-15
TIGR_CMR|SPO_2510	388	SPO_2510 "salicylate hydroxyla	0.613	0.474	0.316	1.4e-14
UNIPROTKB|B5B0J6	384	hpxO "FAD-dependent urate hydr	0.73	0.570	0.248	1.7e-10
DICTYBASE|DDB_G0292328	423	iliM "FAD-binding monooxygenas	0.566	0.401	0.289	2.4e-09

TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 174/248 (70%), Positives = 211/248 (85%)

Query:    34 FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93
             F  RTRS+   + L+ A+     ++E +VIVGAGI GLATAVSL RLGI S+V+EQA+SL
Sbjct:    20 FPIRTRSKPVCLALTNAQTNGGDQEEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESL 79

Query:    94 RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEV 153
             RTGGTSLTLFKNGW VLDA+ VG  LR+QFLEI+GM VK EDGRELRSF FKD+D SQEV
Sbjct:    80 RTGGTSLTLFKNGWRVLDAISVGPQLRTQFLEIEGMVVKKEDGRELRSFKFKDDDQSQEV 139

Query:   154 RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213
             RAVERR+LLETLA+QLPP++++FSS+L  I+++ NG T+L+L +GTR+ A IVIGCDGIR
Sbjct:   140 RAVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLGDGTRLLAQIVIGCDGIR 199

Query:   214 SPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273
             S +A W+GFSEPKYVGHCAYRGLG+YPNGQPF+ K+NYIYG+G+RAGYVPVS TKVYWFI
Sbjct:   200 SKVATWMGFSEPKYVGHCAYRGLGFYPNGQPFQKKVNYIYGKGIRAGYVPVSTTKVYWFI 259

Query:   274 CHNNPTPG 281
             C N+P+ G
Sbjct:   260 CFNSPSLG 267

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 161/248 (64%), Positives = 202/248 (81%)

Query:    34 FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93
             F  RT  +S  +  + A+     R+E +VIVG GI GLATAV+L RLGI S+V+EQA+SL
Sbjct:    18 FPVRTGLKSVCLTTTRAETSGVDREEKVVIVGGGIGGLATAVALHRLGIRSVVLEQAESL 77

Query:    94 RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEV 153
             RTGG SLTL KNGW VLDA+ +G  LR QFLE++G+ +K EDGRELRSF FKD D SQEV
Sbjct:    78 RTGGASLTLSKNGWRVLDAISIGPQLRKQFLEMQGVVLKKEDGRELRSFKFKDNDQSQEV 137

Query:   154 RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR 213
             R VERR+LLETLA+QLPP++++FSS+L  I+++ NG T+L+L +GTR  ANIVIGCDGIR
Sbjct:   138 RGVERRVLLETLASQLPPQTIRFSSKLESIQSNANGDTLLQLKDGTRFLANIVIGCDGIR 197

Query:   214 SPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273
             S +A W+GFSEPKYVG+CA+RGLG++PNGQPF+ K+NYI+GRG+RAGYVPVS TKVYWFI
Sbjct:   198 SKVATWMGFSEPKYVGYCAFRGLGFFPNGQPFQQKVNYIFGRGLRAGYVPVSATKVYWFI 257

Query:   274 CHNNPTPG 281
               N+P+ G
Sbjct:   258 TFNSPSLG 265

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2121254 AT4G38540 "AT4G38540" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 88/219 (40%), Positives = 132/219 (60%)

Query:    60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
             DI+IVGAGI+GL+TAV L RLGI S+V+E +++LR  G + T + N W  ++ALGV   +
Sbjct:     8 DIIIVGAGISGLSTAVGLHRLGIRSMVLESSETLRATGFAFTTWFNAWKAMEALGVSQHI 67

Query:   120 RSQFLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSS 178
             RS    ++G  V +   G       F + +   E R V+R++LLE LA +LP E+++FSS
Sbjct:    68 RSLHDRLEGWVVGTISAGTPPTEMLFPESE-EYESRCVQRKLLLEALAGELPEETIRFSS 126

Query:   179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGY 238
             ++  IE SG    +  L +GT +   +++GCDG+ S + KW+GF  P      A RGL +
Sbjct:   127 KVVHIELSGCYKKV-HLSDGTILKTKVLVGCDGVYSVVGKWLGFKNPATTARLAIRGLTH 185

Query:   239 YPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277
             +P G  F  +    YG GVR+G++P     VYWF+ H +
Sbjct:   186 FPEGHGFGKRFFQFYGDGVRSGFIPCDHNTVYWFLTHTS 224

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2153499 AT5G05320 "AT5G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/220 (38%), Positives = 134/220 (60%)

Query:    59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
             +DI+IVGAGI+GLATA+ L RLGI S+V+E ++ LR  G +L+L+ N W  ++ALG+   
Sbjct:     7 QDIIIVGAGISGLATALGLHRLGIRSIVLESSEQLRATGFALSLYFNAWKAMEALGISQH 66

Query:   119 LRSQFLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFS 177
             +RS     +G  V+    G   +   F + +   EVR V+R++LL+ LA +LP  +++FS
Sbjct:    67 IRSLGDRFQGWVVRPISAGDPPKEMLFPESE-EYEVRCVQRKLLLDALAGELPQGTIRFS 125

Query:   178 SELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLG 237
             S+L  IE SG+   ++ L +GT +   +++GCDG++S + KW+GF  P      A RG+ 
Sbjct:   126 SKLVHIELSGH-YKMVHLSDGTILKTKVLVGCDGVKSVVGKWLGFKNPVKTSRVAIRGIA 184

Query:   238 YYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277
             ++  G     +    YG GVR+G++      VYWF+ H +
Sbjct:   185 HFQTGHELGRRFFQFYGNGVRSGFISCDQNTVYWFLTHTS 224

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2130694 MO1 "monooxygenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 82/218 (37%), Positives = 124/218 (56%)

Query:    61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLR 120
             IVIVG GIAGLAT+++L R GI S+V+E+A+ +R+ G  +    NGW  LD LGVG  LR
Sbjct:    31 IVIVGGGIAGLATSIALHRKGIKSVVLERAEKVRSEGAGIGTLSNGWRALDQLGVGDRLR 90

Query:   121 -SQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSE 179
              +  L  K   +  E+G++ R F     D   E R ++R  L+E L++ LP  +++F S 
Sbjct:    91 LNSSLIHKARTMLIENGKK-REFVSNIVD---EARCIKRNDLVEALSDALPKGTIRFGSH 146

Query:   180 LAKIETSGNGV-TILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHC-AYRGLG 237
             +  IE     +  ++ L NG  I A ++IGCDG  S ++ ++  + PK    C A RG  
Sbjct:   147 IVSIEQDKTTLFPVVHLANGNSIKAKVLIGCDGANSIVSDYLQLN-PKKAFACRAVRGFT 205

Query:   238 YYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275
              YPNG  F  ++  I    V  G +P++  +V+WF+ H
Sbjct:   206 KYPNGHGFPQEVLRIKQGNVLIGRLPLTDNQVFWFLVH 243

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)]

 Score = 210 (79.0 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 60/229 (26%), Positives = 108/229 (47%)

Query:    62 VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
             +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG   +  LG+G  + +
Sbjct:     4 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query:   122 QFLEIKGMAVKS-EDGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPESVQFSS 178
                 ++ MA +    G  +  F      E        V R  L   + +    +SVQF  
Sbjct:    64 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query:   179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS-EPKYVGHCAYRGL 236
              + + E   +GVT+    +G+    +++I  DG  S +  W+ GF+ + +Y G+  + GL
Sbjct:   124 RVTRCEEDADGVTVW-FTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGL 182

Query:   237 GYYPNG-QPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLA 284
                     P +    ++ G G R   +PVS  + Y+F   + P P  LA
Sbjct:   183 VEIDEALAPGDQWTTFV-GEGKRVSLMPVSAGRFYFFF--DVPLPAGLA 228

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IDA

GO:0019628 "urate catabolic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)]

 Score = 210 (79.0 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 60/229 (26%), Positives = 108/229 (47%)

Query:    62 VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
             +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG   +  LG+G  + +
Sbjct:     4 IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query:   122 QFLEIKGMAVKS-EDGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPESVQFSS 178
                 ++ MA +    G  +  F      E        V R  L   + +    +SVQF  
Sbjct:    64 FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query:   179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS-EPKYVGHCAYRGL 236
              + + E   +GVT+    +G+    +++I  DG  S +  W+ GF+ + +Y G+  + GL
Sbjct:   124 RVTRCEEDADGVTVW-FTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGL 182

Query:   237 GYYPNG-QPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLA 284
                     P +    ++ G G R   +PVS  + Y+F   + P P  LA
Sbjct:   183 VEIDEALAPGDQWTTFV-GEGKRVSLMPVSAGRFYFFF--DVPLPAGLA 228

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

TIGR_CMR|SPO_2510 SPO_2510 "salicylate hydroxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 204 (76.9 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 62/196 (31%), Positives = 97/196 (49%)

Query:    61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLR 120
             I++VGAGI GLA A++L+  G    V+EQAD++   G  + +  NG +VL ALG+G    
Sbjct:     6 IIVVGAGIGGLAAALALKARGADVTVLEQADAIAEVGAGIQVSPNGAAVLGALGLGPAFE 65

Query:   121 SQFLEIKGMAVKSEDGR---ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFS 177
             +  + ++G AV   D R   E+           Q    V R  L++ LA  +    V   
Sbjct:    66 A--ISVRGRAVVLSDYRRPGEVLRLDLMRHAGDQRYAFVHRADLIDLLAGAVRRAGVNVR 123

Query:   178 SELAKIETSGNGVT-ILELVNGTRIYANIVIGCDGIRSPI-AKWIGFSEPKYVGHCAYRG 235
               L K++    G   +L + NG  + A++V+G DG+ S   A   G ++P + G  A+R 
Sbjct:   124 L-LQKVDRVDPGSPPVLHMCNGAHLTADLVVGADGLHSRARAALNGAAKPFFTGQIAWRA 182

Query:   236 LGYYPN--GQPFEPKL 249
                 PN  G P E ++
Sbjct:   183 T--VPNTVGLPDEARV 196

GO:0018658 "salicylate 1-monooxygenase activity" evidence=ISS

GO:0018931 "naphthalene metabolic process" evidence=ISS

UNIPROTKB|B5B0J6 hpxO "FAD-dependent urate hydroxylase" [Klebsiella oxytoca (taxid:571)]

 Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 57/229 (24%), Positives = 101/229 (44%)

Query:    62 VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
             +++G GI GL+ AV L+  GI   V E    ++  G +++++ NG   +  LG+G  + S
Sbjct:     4 LVIGGGIGGLSAAVGLKNAGIHCEVFEAVKEIKPVGAAISIWPNGVKCMKHLGMGDIIES 63

Query:   122 QFLEIKGMAVKSE-DGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPESVQFSS 178
                 +  +A K    G +L  F      E        V    L   + +    ++VQF  
Sbjct:    64 YGGPMHFLAYKDYLRGEDLTQFSLAPLVERTGGRPCPVPALNLQREMLDFWGRDAVQFGK 123

Query:   179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS-EPKYVGHCAYRGL 236
              + + E   +GV +    +G+    + +I  DG  S +  ++ G++ E +Y G+  + GL
Sbjct:   124 RVTRCEEHADGVRVW-FTDGSMAEGDFLIAADGSHSALRPYVLGYTPERRYAGYVNWNGL 182

Query:   237 GYYPNG-QPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLA 284
                     P      ++ G G R   +PVS  + Y+F   + P P  LA
Sbjct:   183 VEIDEAIAPGNQWTTFV-GEGKRVSLMPVSDGRFYFFF--DVPLPAGLA 228

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

DICTYBASE|DDB_G0292328 iliM "FAD-binding monooxygenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 162 (62.1 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 53/183 (28%), Positives = 96/183 (52%)

Query:    56 VRKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQAD---SLRTGGTSLTLFKN-GWSVL 110
             ++  +I+I+GAG AGL+ A  LQ+  G  ++++ + D   + R GG+SL L ++ G   +
Sbjct:     7 IKDLNILIIGAGPAGLSLARLLQQEKGCKNVIVVERDVDRNTRIGGSSLDLHESTGLRFI 66

Query:   111 DALGVGSDLRSQFL-EIKGMAVKSEDGRE-LRSFGFKDEDASQEV-RAVERRILLETLAN 167
                 +  D ++    E + + + ++DG+  LR    K      E+ R   RR+L+++L  
Sbjct:    67 KRANLFEDFKNICRPEGESITIANKDGKVILRKPHLKINSKKPEIDRGDLRRLLIDSLL- 125

Query:   168 QLPPESVQFSSELAKIETSG-NGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPK 226
                P+++ ++     +E    +G TI+   NGT I A++VIG DG  S I  ++     K
Sbjct:   126 ---PDTILWNHHFISLEEQPLDGTTIVTFKNGTSIKADLVIGADGANSKIRPYVNDISLK 182

Query:   227 YVG 229
             Y G
Sbjct:   183 YSG 185

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-28
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	1e-22
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	6e-20
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	1e-18
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	3e-14
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	7e-14
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-11
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	4e-11
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	5e-11
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	1e-10
PRK05868	372	PRK05868, PRK05868, hypothetical protein; Validate	2e-10
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	2e-10
PRK07588	391	PRK07588, PRK07588, hypothetical protein; Provisio	4e-10
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	5e-10
PLN02927	668	PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa	1e-09
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	2e-09
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	1e-08
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	2e-08
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	4e-08
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	1e-07
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	2e-07
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	2e-07
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	3e-07
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	4e-07
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	7e-07
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	1e-06
PRK08849	384	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methox	1e-06
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-06
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	2e-05
PRK05732	395	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl h	2e-05
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-04
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	1e-04
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	1e-04
PRK07333	403	PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h	2e-04
PRK08020	391	PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,	2e-04
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	3e-04
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	3e-04
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	4e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	4e-04
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	5e-04
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	7e-04
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	8e-04
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	0.001
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	0.001
TIGR01813	439	TIGR01813, flavo_cyto_c, flavocytochrome c	0.001
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	0.002
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	0.002
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.002
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	0.002
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	0.002
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	0.002
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	0.003
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	0.003
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	0.003
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	0.003
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	0.004
PRK08244	493	PRK08244, PRK08244, hypothetical protein; Provisio	0.004
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	0.004

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  110 bits (278), Expect = 6e-28
 Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 7/180 (3%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           D+ IVGAG AGLA A++L R G+   ++E+A   L   G  + L  N    L+ LG+   
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR 63

Query: 119 LRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLAN---QLPPESVQ 175
           L +  +    + V  + GR L  F   +         V R  LL  L      LP  +++
Sbjct: 64  LEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLR 123

Query: 176 FSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIG---FSEPKYVGHCA 232
           F +E+  +E  G+GVT+    +G  + A++++G DG  S + +  G   FS   Y     
Sbjct: 124 FGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTAL 183

Length = 387

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 95.9 bits (239), Expect = 1e-22
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 6/217 (2%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLR 120
           I I+GAGI GL  A  LQ  G    V E+ +S++  G  + +  N    L    +   ++
Sbjct: 3   IAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIK 62

Query: 121 SQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSEL 180
           +    +  M +  + G  L     K   ++     + R+ L++ + + +  +++    E+
Sbjct: 63  NAGQILSTMNLLDDKGTLLNKVKLK---SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEV 119

Query: 181 AKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIG-FSEPKYVGHCAYRGLGYY 239
            KIE   + VTI    +G     ++ IG DGI S + + +   S+ +Y G+  +RGL   
Sbjct: 120 TKIENETDKVTIHF-ADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDD 178

Query: 240 PNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN 276
            + +  +    Y +G   R G VP+   + YWFI  N
Sbjct: 179 IDLKLPDCAKEY-WGTKGRFGIVPLLNNQAYWFITIN 214

Length = 373

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 88.6 bits (220), Expect = 6e-20
 Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 28/195 (14%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVG 116
           +   ++IVG GI GLA A++L R GI   ++EQA  +   G  + L  N +S LDALGVG
Sbjct: 3   KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVG 62

Query: 117 SDLRSQFLEIKGM----AVKSED------GRELRS-FGFKDEDASQEVRAVERR-----I 160
              R + +    +    AV +E+      G+  R+ FG           AV  R      
Sbjct: 63  EAARQRAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNP--------YAVIHRADIHLS 114

Query: 161 LLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKW 219
           LLE      P    + S+ +  IE  G+GVT+     G R   + +IGCDG++S +    
Sbjct: 115 LLEA-VLDHPLVEFRTSTHVVGIEQDGDGVTV-FDQQGNRWTGDALIGCDGVKSVVRQSL 172

Query: 220 IGFSEPKYVGHCAYR 234
           +G   P+  GH  YR
Sbjct: 173 VG-DAPRVTGHVVYR 186

Length = 396

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 22/234 (9%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           + ++IVG GI GL+ A++L+R GI   ++E     R  G  +TL  N    L  LGV  +
Sbjct: 5   KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE 64

Query: 119 LRSQFLEIKGMAVKSEDG---RELRSFGFKDEDASQEV---RAVERRILLETL----ANQ 168
                    G+ +   DG    EL +     +D        R    RIL +      A+ 
Sbjct: 65  CLEAGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGAD- 123

Query: 169 LPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI--GFSEPK 226
                V+  + +  IE   +GVT+    +GT    ++V+G DG+ S +   +     EP+
Sbjct: 124 -----VRLGTTVTAIEQDDDGVTVT-FSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPE 177

Query: 227 YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTP 280
           Y G   +R     P     +  L Y+ G   +AG VP+S   +Y F+    P  
Sbjct: 178 YTGQGVWR--AVLPRPAEVDRSLMYL-GPTTKAGVVPLSEDLMYLFVTEPRPDN 228

Length = 375

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 29/174 (16%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
            ++I G GI GL  A++L + GI  +V E A  LR  G  + L  +    L  LG+   L
Sbjct: 2   KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDAL 61

Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVR-----------AVER----RILLET 164
                    + +++   REL  F    +    E R           ++ R     +LL+ 
Sbjct: 62  D-------AIGIRT---RELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDA 111

Query: 165 LANQLPPESVQFSSELAKIETSGNGVT--ILELVNGTR--IYANIVIGCDGIRS 214
           +  +L P++V+    +   E   +     + +   G    +  +++IG DGI S
Sbjct: 112 VRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165

Length = 413

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 71.0 bits (174), Expect = 7e-14
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 25/194 (12%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGS 117
           +   +I GAG+AGL+ A+ L   G    +IE+A  L   G  L L  N    L+ LGV  
Sbjct: 2   RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVAD 61

Query: 118 DLRS-----QFLEIKGMAVKSEDGRELRSFGFKD-EDASQEV---------RAVERRILL 162
            L       + L +        DGR+ R        D +++          RA  +  LL
Sbjct: 62  RLSGTGVTPKALYLM-------DGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALL 114

Query: 163 ETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGTRIY-ANIVIGCDGIRSPIAKWI 220
           +   N  P   ++  +E+     +GN +T   +  N      A  +I CDG+ S +    
Sbjct: 115 DACRNN-PGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173

Query: 221 GFSEPKYVGHCAYR 234
           GFS+ ++ GH A+R
Sbjct: 174 GFSKARFSGHIAWR 187

Length = 400

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 39/226 (17%), Positives = 66/226 (29%), Gaps = 32/226 (14%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--GGTSLTLFKNGWSVLDALGVGS 117
           D+VIVGAG AG + A  L + G+  LV+E+              L       L       
Sbjct: 5   DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGG-LSPRALEELIPDFDEE 63

Query: 118 ---DLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESV 174
               +    +   G  V  E                 E   V+R    + LA +      
Sbjct: 64  IERKVTGARIYFPGEKVAIEVPVG-------------EGYIVDRAKFDKWLAERAEEAGA 110

Query: 175 QF--SSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGF-SEPKYVGHC 231
           +    + +  +    +GV +        + A +VI  DG+ S +A+ +G           
Sbjct: 111 ELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAI 170

Query: 232 AYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277
             +           + +        V  G         Y +I    
Sbjct: 171 GVK--EVIEVPDDGDVEEFLYGPLDVGPGG--------YGWIFPLG 206

Length = 396

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 30/179 (16%)

Query: 60  DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGG-------TSLTLFKNGWSV-- 109
           DIVIVG G  GLA A++L R G +   +IE                ++L+      S+  
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSALSAA----SIRL 56

Query: 110 LDALGVGSDLRSQFLE-IKGMAVKSEDGRELRSFGFKDEDASQEVRA-----VE----RR 159
           L+ LGV   +     + I+ + V S+ G    SFG    DA +         VE    ++
Sbjct: 57  LEKLGVWDKIEPARAQPIRDIHV-SDGG----SFGALHFDADEIGLEALGYVVENRVLQQ 111

Query: 160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAK 218
            L E L       ++   + + ++    + V +  L +G ++ A +++G DG  S + +
Sbjct: 112 ALWERLQELPNRVTILCPARVVELPRHSDHVEL-TLDDGQQLRARLLVGADGANSKVRQ 169

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 49/214 (22%), Positives = 73/214 (34%), Gaps = 32/214 (14%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR----TGGTSLTLFKNGWSVLDALGV 115
           D+V+VGAG AG + A  L   G+  L++E+    R     G  S          LD  G 
Sbjct: 2   DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALS----PRALEELDLPGE 57

Query: 116 GSDLRSQFLEIKG--MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPES 173
                     ++G      + D  E+                ++R    E LA +     
Sbjct: 58  LI-----VNLVRGARFFSPNGDSVEIPIETE-------LAYVIDRDAFDEQLAERAQEAG 105

Query: 174 VQFSSE---LAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGH 230
            +       L         V I+    GT + A IVIG DG RS +AK +G  +      
Sbjct: 106 AELRLGTRVLDVEIHDDRVVVIVRGSEGT-VTAKIVIGADGSRSIVAKKLGLKKEPREYG 164

Query: 231 CAYRGLGYYP-NGQPFEPKLNYIYGRGVRAGYVP 263
            A R         +  +     +Y   +  G VP
Sbjct: 165 VAAR--AEVEMPDEEVDEDFVEVY---IDRGIVP 193

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           D++IVG G AGL  A+ L R G+  +++E+  +      +  L +    +L   G+   +
Sbjct: 3   DVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRI 62

Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVE-------RRILLETLANQLPPE 172
            ++    +GM           S    D D       V          IL E    +    
Sbjct: 63  LAEGAPHEGMG----LAFYNTSRRRADLDFLTSPPRVTVYPQTELEPILREHAEAR--GA 116

Query: 173 SVQFSSELAKIETSGNGVT--ILELVNGT--RIYANIVIGCDGIRSPIAKWIGFS 223
            V+F +E+  +E  G+GVT  + +  +G    + A  ++GCDG RSP+ K +G  
Sbjct: 117 QVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKQLGIE 171

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 15/179 (8%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           + +V+ GA +AG A A  L R G    ++E+   LR GG ++ +      VL+ +G+ + 
Sbjct: 2   KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA 61

Query: 119 LRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVE-------RRILLETL--ANQL 169
            +     I+G +    DG EL    F+D +++     V        R  L+E L  A Q 
Sbjct: 62  AQEHKTRIRGASFVDRDGNEL----FRDTESTPTGGPVNSPDIELLRDDLVELLYGATQP 117

Query: 170 PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
             E + F   ++ ++  G+ V +       R + ++VIG DG+ S + + +   E ++V
Sbjct: 118 SVEYL-FDDSISTLQDDGDSVRVTFERAAAREF-DLVIGADGLHSNVRRLVFGPEEQFV 174

Length = 372

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 34/190 (17%)

Query: 52  AEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
              D  +  +V+VGAG  GLA A+ L + G+  ++++  D+L TG  ++   K    + D
Sbjct: 17  DADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFD 76

Query: 112 ALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDE---------DASQEVRA------- 155
            LG G     + ++ KG++     G   + F  +DE         +      A       
Sbjct: 77  RLGCG----ERMVD-KGVSWNV--G---KVF-LRDEEVYRFDLLPEPGHRRPAFINLQQY 125

Query: 156 -VERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIY---ANIVIGCDG 211
            VE   L+E  A  LP   +++ +++  +E   +GVT L +      Y   A+ VI CDG
Sbjct: 126 YVE-GYLVE-RAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGPYTLEADWVIACDG 182

Query: 212 IRSPIAKWIG 221
            RSP+ + +G
Sbjct: 183 ARSPLREMLG 192

Length = 547

>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 22/206 (10%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLR 120
           + I GAGIAG   A  L+R G    +IE+A  LRTGG  +  +  G+ V   +G+   LR
Sbjct: 3   VAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLR 62

Query: 121 SQFLEIKGMAVKSEDGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPE-SVQFS 177
               +I+ +      GR                +  ++ R  L   +   +  +    F 
Sbjct: 63  EAGYQIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFD 122

Query: 178 SELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLG 237
             +A I+   +GV  +    GT    ++VIG DG+ S +                 R L 
Sbjct: 123 DSIATIDEHRDGVR-VTFERGTPRDFDLVIGADGLHSHV-----------------RRLV 164

Query: 238 YYPNGQPFEPKLNYIYGRGVRAGYVP 263
           + P    FE  L       V  GY P
Sbjct: 165 FGPERD-FEHYLGCKVAACVVDGYRP 189

Length = 391

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 15/180 (8%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LRTGGTSLTLFKNGWSVLDALG-VGSD 118
            V++G  + GL  A+ L+R G    V E++ + L   G  + L      +L AL   G  
Sbjct: 9   AVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQP---ELLRALAEAGVA 65

Query: 119 LRSQF-LEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFS 177
           L +   +  +       DGR ++          Q   +     L   L    P E     
Sbjct: 66  LPADIGVPSRERIYLDRDGRVVQ-----RRPMPQTQTSWNV--LYRALRAAFPAERYHLG 118

Query: 178 SELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIGFSEPKYVGHCAYRGL 236
             L   E  G+ VT     +G R  A++++G DG RS + A+ +    P Y G+ A+RGL
Sbjct: 119 ETLVGFEQDGDRVTAR-FADGRRETADLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGL 177

Length = 386

>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 45/318 (14%)

Query: 3   PLCLNSSFLPSSLHYLH-------SRSFHCPQSS-SGFCFQTRTRSRSKAIRLSIAKAEA 54
             C + +  PS L +         ++ F+   SS SG      +  RS+   L +  A A
Sbjct: 5   LFCYSINPSPSKLDFTRTHVFSPVAKQFYLDLSSFSGKPGGGLSGFRSRKALLGVKAATA 64

Query: 55  DVRKED-------------IVIVGAGIAGLATAVSLQRLGIGSLVIEQ-ADSLRTGGT-- 98
            V KE+             +++ G GI GL  A++ ++ G   LV E+   ++R  G   
Sbjct: 65  LVEKEEKREAVTEKKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYR 124

Query: 99  -SLTLFKNGWSVLDALGVGSDLRSQFLE--------IKGMAVKSEDGRELRSFGFKDEDA 149
             + +  N  + L+A+ +  D+  Q +E        I G+ V    G     F      A
Sbjct: 125 GPIQIQSNALAALEAIDI--DVAEQVMEAGCITGDRINGL-VDGISGSWYVKFDTFTPAA 181

Query: 150 SQEV---RAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV 206
           S+ +   R + R  L + LA  +  + ++  S +   E SG+ VT++ L NG R   +++
Sbjct: 182 SRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVV-LENGQRYEGDLL 240

Query: 207 IGCDGIRSPIA-KWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVP-- 263
           +G DGI S +     G SE  Y G+  Y G+  +         + Y    G +  +V   
Sbjct: 241 VGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADI--ESVGYRVFLGHKQYFVSSD 298

Query: 264 VSPTKVYWFICHNNPTPG 281
           V   K+ W+  H  P  G
Sbjct: 299 VGGGKMQWYAFHEEPAGG 316

Length = 668

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           D++I G+GIAG+A A  L   G    V+E+A   R    +  L  +G  V+ A+G+  D+
Sbjct: 7   DVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDV 66

Query: 120 -RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVE----RRILLETLANQLPPESV 174
             +  L    M +   D   + S  ++   A      +     RR+LL  L + LP   +
Sbjct: 67  FAAGGLRRDAMRL-YHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKL-DGLPNVRL 124

Query: 175 QFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDGIRSPI 216
           +F + + +IE   +G VT + L +G R+   +++G DG RS I
Sbjct: 125 RFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMI 167

Length = 388

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 23/174 (13%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-----SLTLFKNGWSVLDALG 114
           D++IVG G+ GL+ A++L RLG   + + +A+S           SL L      +L+ LG
Sbjct: 1   DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLG 60

Query: 115 VGSDLRSQFLEIKGMAVKSEDGR----ELRSFGFKDEDASQEV------RAVERRILLET 164
           +   L      I  + V S+ G      LR+  F        V      +A+  R+ L T
Sbjct: 61  LWPKLAPFATPILDIHV-SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLT 119

Query: 165 LANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAK 218
                 P      +   +I  + + V +  L NG ++ A ++I  DG  S + +
Sbjct: 120 NIQLYCP------ARYKEIIRNQDYVRVT-LDNGQQLRAKLLIAADGANSKVRE 166

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 31/182 (17%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG-----TSLTLFKNGWSVLDALG 114
           D++IVGAG  GL  A+ L R G+   +IE+A     G         T       V D LG
Sbjct: 5   DVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQ-----EVFDDLG 59

Query: 115 VGSDLRSQ-FLEIKGMAVKSEDGRELRSFGFKDEDASQEV---------RAVERRILLET 164
           V   + +   L      +  +DG    S  F   + + +          +    RIL E 
Sbjct: 60  VLDRVVAAGGLYPPMR-IYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRER 118

Query: 165 LANQLPPE---SVQFSSELAKIETSGNGVT--ILELVNGTRIYANIVIGCDGIRSPIAKW 219
           LA     E    V+F  EL   E   +GVT  +        + A  ++G DG RS + K 
Sbjct: 119 LA-----ELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKA 173

Query: 220 IG 221
           +G
Sbjct: 174 LG 175

Length = 502

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ--ADSLRTGGTSLTLFKNGWSVLDALGVGS 117
           D+ IVG GI GL  A +L+  G+   +IE   A++    G +  L      + + +GV  
Sbjct: 20  DVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWE 79

Query: 118 DLRSQFLEIKGMAVKSEDGRELRSFGFKDED-ASQEVRAV-ERRILLETLANQLPP-ESV 174
            +  Q  + +   ++  D        F+  D  ++ +  V E ++LLE L   L    ++
Sbjct: 80  KILPQIGKFR--QIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI 137

Query: 175 QF--SSELAKIETSGNGVTI-LELVNGTR-IYANIVIGCDGIRSPIAKWIG 221
            +   +E+  +E   +  T+ LE+    + + + +V+  DG RSPI +  G
Sbjct: 138 TWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188

Length = 415

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 19/190 (10%)

Query: 61  IVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           + I+G GIAG+A A++L +   +   + E A +    G  ++   N    +  LG+G   
Sbjct: 3   VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGE-- 60

Query: 120 RSQFLEIKGMAVKS-ED----GRELRSFGFKDEDASQEV--RAVERRILLETLANQLPPE 172
              + ++        +D     R      +     +  V   +V R   L+ L   LP  
Sbjct: 61  --AYTQVADSTPAPWQDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEG 118

Query: 173 SVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI----GFS--EPK 226
              F     +IE     V +L   +GT    +++IG DGI+S +  ++    G +   P+
Sbjct: 119 IASFGKRATQIEEQAEEVQVL-FTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPR 177

Query: 227 YVGHCAYRGL 236
           + G CAYRGL
Sbjct: 178 FSGTCAYRGL 187

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQA---DSLRTGGTSLTLFKNGWSV--LDALG 114
           DI ++G G AGLA A++L R G    ++        LRT  T+L     G S+  L+ LG
Sbjct: 9   DIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRT--TALL----GPSIRFLERLG 62

Query: 115 VGSDLRSQFLEIKGMAVKSEDGRELRS--FGFKDEDASQEV------RAVERRILLETLA 166
           + + L      ++ M +    GR +R+    F+  +  ++         +  R L   +A
Sbjct: 63  LWARLAPHAAPLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVA 122

Query: 167 NQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP 215
               P   +F  E   +    + VT+  L +GT + A +V+G DG  SP
Sbjct: 123 EL--PNITRFGDEAESVRPREDEVTV-TLADGTTLSARLVVGADGRNSP 168

Length = 388

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 37/160 (23%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV----LDALGV 115
           D+ ++G G AGLA A+ L R G+   +IE    +           + + V    L  LG+
Sbjct: 1   DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI--------PGNHTYGVWDDDLSDLGL 52

Query: 116 GSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQ 175
             D                D  E R F  +         +V+   L E L  + P   V 
Sbjct: 53  A-DCVEH---------VWPDVYEYR-FPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVL 101

Query: 176 F-SSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214
           +   +    E  G  ++ +    G RI A +VI   G   
Sbjct: 102 WLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 32/181 (17%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW------------ 107
           D+V+VG G+ G + A++L + G+   ++      R          + W            
Sbjct: 7   DVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPAD-------DAWDSRVYAISPSSQ 59

Query: 108 SVLDALGVGSDL-RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQ-----EVRAVERRIL 161
           + L+ LGV   L  ++   +  M V  +    L  F        Q     E   +E R L
Sbjct: 60  AFLERLGVWQALDAARLAPVYDMRVFGDAHARLH-FSAYQAGVPQLAWIVESSLIE-RAL 117

Query: 162 LETLANQLPPESVQ-FSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220
              L  Q    ++  F +    +E   +  T L L +G  + A++V+G DG  S +    
Sbjct: 118 WAALRFQ---PNLTWFPARAQGLEVDPDAAT-LTLADGQVLRADLVVGADGAHSWVRSQA 173

Query: 221 G 221
           G
Sbjct: 174 G 174

Length = 388

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ-------ADSLR-------TGGTSLTL 102
              D+V++GAG+ GLA A  L R G+   V+E+       A +         TG +   +
Sbjct: 2   PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLM 61

Query: 103 FKNGWSVLDALGVGSDLRSQFLEI-KGMAVKSEDGRELRSFGFKDEDASQEVRAVERRIL 161
             +   +   LG         L       V   DG  +    + D +A+ E+        
Sbjct: 62  P-DPGPLFRELGNLDADGLDLLPPDPAYRVFLPDGDAID--VYTDLEATAELLESLEPGD 118

Query: 162 LETLAN 167
            E LA 
Sbjct: 119 GEALAR 124

Length = 487

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 67/268 (25%), Positives = 99/268 (36%), Gaps = 62/268 (23%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-------TGGTSLTLFKNGWSVLDA 112
            ++IVG G  GLA A+ L R G+ S+++E+ D          T   S+  F+    + D 
Sbjct: 9   PVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRR-LGIADE 67

Query: 113 L---GVGSDL----------------RSQFLEI--KGMAVKSEDGRELRSFGFKDEDASQ 151
           +   G+  D                 R +          V   DG              Q
Sbjct: 68  VRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPE--LPHRIPQ 125

Query: 152 EVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVT--ILELVNGTR--IYANIVI 207
           +   +E  ILLE  A Q P  ++++   L   E   +GVT  + +L  G    I A+ ++
Sbjct: 126 KY--LEP-ILLEHAAAQ-PGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLV 181

Query: 208 GCDGIRSPIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFE-PKLNYIYGRGVRAGYVPVS 265
           GCDG RS + + +G S   Y G     R L  Y        P L         A  V   
Sbjct: 182 GCDGARSAVRRSLGIS---YEGTSGLQRDLSIY-----IRAPGL---------AALVGHD 224

Query: 266 PTKVYWFICHNNP-TPGYLALVMLKHIW 292
           P  +YW     NP   G L  +  +  W
Sbjct: 225 PAWMYWLF---NPDRRGVLVAIDGRDEW 249

Length = 545

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 50/192 (26%), Positives = 73/192 (38%), Gaps = 52/192 (27%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD--------------SLRTGGTSLTLFKN 105
           D+VIVGAG  GL  A  L + G+  LV+E+                +LR           
Sbjct: 12  DVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALR----------- 60

Query: 106 GWSVLDALGVGSDLRSQFLEI----KGMAVKSEDGRELRSFGFKDEDAS---------QE 152
              VL A+G+  +     L       GM      GR L                    Q 
Sbjct: 61  ---VLQAIGLADE----VLPHTTPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQP 113

Query: 153 VRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTI-LELVNGTR--IYANIVIGC 209
              +E  +L   LA + P   V+F  E+  +    +GVT+ L   +G R  + A  V+GC
Sbjct: 114 --LLEA-VLRAGLA-RFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGC 169

Query: 210 DGIRSPIAKWIG 221
           DG  S + + +G
Sbjct: 170 DGANSFVRRTLG 181

Length = 500

>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 34/196 (17%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIE----------QADSLRTGGTSLTLFKNGW 107
           K DI +VG G+ G ATA+   + G    VIE          Q   +R    S    +   
Sbjct: 3   KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAIS----QTSV 58

Query: 108 SVLDALGVGSDLRSQFLEIKGMAV------KSEDGRELRSFGFKDE-DASQEVRAVERRI 160
            +L++LG  S        I  M V      ++ +  E R+    DE +  Q    VE R+
Sbjct: 59  DLLESLGAWS-------SIVAMRVCPYKRLETWEHPECRTRFHSDELNLDQLGYIVENRL 111

Query: 161 LLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA 217
           +   L  Q    P  ++    +LA +E S  G   + L +G  I A  VIG DG  S + 
Sbjct: 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-NRVTLESGAEIEAKWVIGADGANSQVR 170

Query: 218 KW--IGFSEPKYVGHC 231
           +   IG +   Y  HC
Sbjct: 171 QLAGIGITAWDYRQHC 186

Length = 384

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D+V++G GI GL+TA  L R G+   ++E+ D     G S
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDL--ASGAS 38

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91
          D+VI+G GI GL+ A  L   G    V+E  +
Sbjct: 6  DVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37

Length = 387

>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 22/179 (12%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSL---VIE---QADSLRTG--GTSLTLFKNGWSVLD 111
           D++IVG G+AG   A++L RL  G L   +IE          G    ++ L       L 
Sbjct: 5   DVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLA 64

Query: 112 ALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRA-----VERRIL---LE 163
            LGV   L      I  + V S+ G      GF   DA           VE   +   L 
Sbjct: 65  RLGVWQALADCATPITHIHV-SDRGH----AGFVRLDAEDYGVPALGYVVELHDVGQRLF 119

Query: 164 TLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGF 222
            L ++ P  ++   + +A +E +   V  + L +G  +   +++  DG  S + + +G 
Sbjct: 120 ALLDKAPGVTLHCPARVANVERTQGSVR-VTLDDGETLTGRLLVAADGSHSALREALGI 177

Length = 395

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 23/79 (29%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-------RTGGTSL------------T 101
           I IVG GIAGLA A  L + G    V E  D L         GG  +             
Sbjct: 2   IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEA 61

Query: 102 LFKNGWSVLDALGVGSDLR 120
           L +    +LD LG+   LR
Sbjct: 62  LLE----LLDELGLEDKLR 76

Length = 434

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D+V++G+G+AGLA A+     G+   V+E+      GG +
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQP--FGGAT 38

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 52 AEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
                  D+ I+GAG +GLA A +L++ G+   VI +      GGT
Sbjct: 2  TVGVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD-DVGGT 47

Length = 443

>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 32/176 (18%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWS----------- 108
           D+VI G G  GLA AV+L +     L +   D+              WS           
Sbjct: 3   DVVIAGGGYVGLALAVAL-KQAAPHLPVTVVDA---------APAGAWSRDPRASAIAAA 52

Query: 109 ---VLDALGVGSDLRSQFLEIKGMAV---KSEDGRELRSFGFKDEDASQEVRA--VERRI 160
              +L+ALGV  ++  +   I  M +   ++ D        F+ E    E  A  VE R+
Sbjct: 53  ARRMLEALGVWDEIAPEAQPITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRV 112

Query: 161 LLETLANQLPPESVQFSSELAKI--ETSGNGVTILELVNGTRIYANIVIGCDGIRS 214
           L+  L  +     +      +    ET   GVT+  L +G+ + A +++  DG RS
Sbjct: 113 LINALRKRAEALGIDLREATSVTDFETRDEGVTVT-LSDGSVLEARLLVAADGARS 167

Length = 403

>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 32/182 (17%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ-------ADS---LRT---GGTSLTLFK-- 104
           DI IVG G+ G A A+ L + G    V+E        ADS   +R       S+ L K  
Sbjct: 7   DIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL 66

Query: 105 NGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELR--SFGFKDEDASQEVRAVERRILL 162
             W  + A+      R +  E +   V   D  EL+    G+           VE R+L 
Sbjct: 67  GVWDAVQAMRSHPYRRLETWEWETAHV-VFDAAELKLPELGY----------MVENRVLQ 115

Query: 163 ETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKW 219
             L   L   P  +++  + L  ++   +G   L L +G  I A +VIG DG  S + + 
Sbjct: 116 LALWQALEAHPNVTLRCPASLQALQRDDDGWE-LTLADGEEIQAKLVIGADGANSQVRQM 174

Query: 220 IG 221
            G
Sbjct: 175 AG 176

Length = 391

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90
          +   DIV+VGAG AGL+ A SL   G+   +IE+ 
Sbjct: 1  MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35

Length = 392

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVG 116
           +  D++I+G G AGL  A+   R G+  ++I +      G  + T     +       +G
Sbjct: 2   KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQLTKTTDVENYPGFPGGILG 60

Query: 117 SDLRSQFLEI 126
            +L  Q  E 
Sbjct: 61  PELMEQMKEQ 70

Length = 305

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT 101
           IVGAG++GL  A  L + G   LV+E+ D  R GG + +
Sbjct: 1   IVGAGLSGLVAAYLLAKRGKDVLVLEKRD--RIGGNAYS 37

Length = 66

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 25/169 (14%)

Query: 60  DIVIVGAGIAGLATAVSL--QRLGIGSLVIEQA-DSLRTGGTSLTLFKNGWSVLDAL--G 114
           D+VIVGAG+AGL  A+ L   R G+  L+I+           + +        L      
Sbjct: 1   DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGPLAPCVEH 60

Query: 115 VGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESV 174
                  +F          +  R+L   G+           V    L E L  +     V
Sbjct: 61  SWPGYEVRF---------PDGRRKLIGRGY---------GRVSSDRLHEELLRRCAENGV 102

Query: 175 QF-SSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGF 222
              ++++A ++       +  L +G  I A +VI   G     A  +G+
Sbjct: 103 IRLNAKVASVDAEPVESLV-VLEDGRTIRARLVIDARGASPSGALTVGY 150

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 51  KAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL------RTGGTSLTLFK 104
              A  +K+ +VI G G+ GL  A  L+ LG+   V+  A +L      RT G  L    
Sbjct: 139 LDCARNKKKAVVI-GGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLR--- 194

Query: 105 NGWSVLDALGVGSDLRSQFLEIKGM----AVKSEDGRELRS 141
                L+ LG+   L     EI G      V+  DG E+ +
Sbjct: 195 ---RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPA 232

Length = 793

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91
           V++GAG  GLA A+ L   GI   V+EQ D
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRD 31

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIE 88
          D++I+GAG  GLA A+  Q+ G+  L+IE
Sbjct: 1  DVIIIGAGPCGLACAIEAQKAGLSYLIIE 29

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
           +  +V++GAGIAGL  A  L + G    ++EQ      GG + T  + G+
Sbjct: 1   ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP--GGCAGTFRRRGF 48

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
           K+ +VI+GAG AGL  A  L + G    V+E       GG S T+   G 
Sbjct: 4   KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP--VVGGISRTVTYKGN 51

Length = 479

>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTSL 100
           D+V+VG+G AGL+ A+S ++ G  + +++E+   +  GG S 
Sbjct: 1   DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI--GGNSA 40

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton [Energy metabolism, Electron transport]. Length = 439

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
           D++IVGAG+AGL+ A  L++ G    ++E  D  R GG SLT    G
Sbjct: 9   DVIIVGAGLAGLSAAYELKKAGYQVQILEARD--RVGGRSLTARAGG 53

Length = 450

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 21/159 (13%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           D+V+VG G AG+A A++  RLG   L++E+   L  GG   T   +G    D    G+  
Sbjct: 1   DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWL--GGM-AT---SGLVGTDD---GNYD 51

Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPES---VQF 176
           R Q   I G+A   E  R LR+ G    + +      +  +  + + +++  E+   V  
Sbjct: 52  RGQ--VIGGIA--REFLRRLRARGGPLGNRTSGPWPFDPEV-AKLVLDEMLAEAGVTVLL 106

Query: 177 SSELAKIETSG--NGVTILELVNGTRIYANIVIGC--DG 211
            + +  +   G   GVT+        I A + I    DG
Sbjct: 107 HTRVVGVVKEGRITGVTVENKSGRLTIRAKVFIDATGDG 145

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG 97
           D  I+G GIAG A A++L R G    + E  ++   G 
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299

Length = 662

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89
           I IVGAGIAGLA A +L+  G    V E+
Sbjct: 3  SIAIVGAGIAGLAAAYALREAGREVTVFEK 32

Length = 331

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 159 RILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI 207
           + L+E L  +LP  ++   + + KI+ SG+G  I+ L NG  I A+ VI
Sbjct: 221 QSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIV-LSNGGEIEADAVI 268

Length = 451

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
           D++++G+G  GL+ A++ ++LG+  +V+E+      GGT  T F  G 
Sbjct: 11  DVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF--GGT--TAFSGGV 54

Length = 574

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 61 IVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGG 97
          + I+G GI GL+ A  L + G      ++E +D  R GG
Sbjct: 3  VAIIGGGITGLSAAYRLHKKGPDADITLLEASD--RLGG 39

Length = 451

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 45  IRLSIAKAE---------ADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95
           +R+++AKA           +V K  ++++G G+AG+  A+ L  +G    ++E+  S+  
Sbjct: 103 LRMAVAKARKLEPLEEIKVEVSK-SVLVIGGGVAGITAALELADMGFKVYLVEKEPSI-- 159

Query: 96  GGTSLTLFK 104
           GG    L K
Sbjct: 160 GGRMAKLNK 168

Length = 622

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 56  VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGV 115
           V   ++V+VGAG+AGL  A  L  +G   +V+E     R GG   T+   G  V+ A  +
Sbjct: 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA--RPGGRVKTMKMKGDGVVAAADL 293

Query: 116 G 116
           G
Sbjct: 294 G 294

Length = 808

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 174 VQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRS-PIAKWIGFSEPKYVGHC 231
           ++ ++E+  IE   +GV +L   NG   + A  VI   G+ + P+A+  G   P+     
Sbjct: 170 LRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG--IPEDFKIF 227

Query: 232 AYRGLGYY 239
             RG    
Sbjct: 228 PVRGEYLV 235

Length = 429

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGV 115
           D++++G G+AGL  A++    G    ++         G     F +G   +D LG 
Sbjct: 4   DVLVIGGGLAGLTAALAAAEAGKRVALV-------AKGQGALHFSSG--SIDLLGY 50

Length = 422

>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 15/175 (8%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGS 117
           K +++I+G G  GL  A  L   G+ + VIE+         +LTL      +LD  G   
Sbjct: 2   KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRG--- 58

Query: 118 DLRSQFLEIKGMAVKSEDGRELRS-FGFKDEDASQE----VRAVERRILLETLANQLPPE 172
            L  +FLE KG  + S     L +   F   D S      +   E   +LE  A  L  E
Sbjct: 59  -LLERFLE-KGRKLPSGHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVE 116

Query: 173 SVQFSSELAKIETSGNGV-TILELVNGTR-IYANIVIGCDGIRSPIAKW--IGFS 223
            +   +E+  +   G+GV  ++   +G R + ++ V+G DG  S + K   I F 
Sbjct: 117 -IFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFP 170

Length = 493

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95
          + + D+V++G G AGL  A+     G+   ++ +A   R 
Sbjct: 4  IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43

Length = 562

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
PRK06753	373	hypothetical protein; Provisional	99.96
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.96
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.96
PRK08013	400	oxidoreductase; Provisional	99.95
PRK05868	372	hypothetical protein; Validated	99.95
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.95
PRK06475	400	salicylate hydroxylase; Provisional	99.95
PRK08163	396	salicylate hydroxylase; Provisional	99.95
PRK07588	391	hypothetical protein; Provisional	99.95
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.94
PRK06847	375	hypothetical protein; Provisional	99.94
PRK07045	388	putative monooxygenase; Reviewed	99.94
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.94
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.94
PRK06184	502	hypothetical protein; Provisional	99.94
PRK07236	386	hypothetical protein; Provisional	99.94
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.94
PRK08244	493	hypothetical protein; Provisional	99.94
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.94
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.94
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.94
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.94
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.94
PRK07538	413	hypothetical protein; Provisional	99.93
PRK09126	392	hypothetical protein; Provisional	99.93
PTZ00367	567	squalene epoxidase; Provisional	99.93
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.93
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.93
PRK07190	487	hypothetical protein; Provisional	99.93
PRK06185	407	hypothetical protein; Provisional	99.93
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.93
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.93
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.92
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.92
PRK08294	634	phenol 2-monooxygenase; Provisional	99.92
PLN02985	514	squalene monooxygenase	99.92
PRK06126	545	hypothetical protein; Provisional	99.92
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.92
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.92
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.91
PRK06996	398	hypothetical protein; Provisional	99.91
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.91
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.9
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.9
PRK06834	488	hypothetical protein; Provisional	99.9
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.89
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.88
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.86
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.86
PRK11445	351	putative oxidoreductase; Provisional	99.85
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.84
PRK10015	429	oxidoreductase; Provisional	99.81
PLN02697	529	lycopene epsilon cyclase	99.8
PRK10157	428	putative oxidoreductase FixC; Provisional	99.8
PLN02463	447	lycopene beta cyclase	99.78
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.74
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.73
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.73
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.72
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.71
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.69
COG2081	408	Predicted flavoproteins [General function predicti	99.69
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.68
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.68
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.66
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.65
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.64
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.59
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.59
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.57
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.54
COG0579	429	Predicted dehydrogenase [General function predicti	99.53
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.53
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.53
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.52
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.52
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.52
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.51
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.5
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.49
PRK05257	494	malate:quinone oxidoreductase; Validated	99.49
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.48
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.47
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.46
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.45
PLN02661	357	Putative thiazole synthesis	99.44
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.44
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.43
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.42
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.42
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.42
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.41
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.4
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.4
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.39
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.38
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.37
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.36
PRK08274	466	tricarballylate dehydrogenase; Validated	99.35
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.35
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.33
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.32
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.31
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.31
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.31
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.3
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.29
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.29
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.29
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.28
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.28
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.24
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.23
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.22
PRK06175	433	L-aspartate oxidase; Provisional	99.22
PRK08401	466	L-aspartate oxidase; Provisional	99.22
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.21
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.21
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.2
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.2
PRK07804	541	L-aspartate oxidase; Provisional	99.19
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.17
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.17
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.17
KOG2853	509	consensus Possible oxidoreductase [General functio	99.17
PRK07121	492	hypothetical protein; Validated	99.15
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.15
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.15
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.15
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.15
PRK08071	510	L-aspartate oxidase; Provisional	99.15
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.14
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.14
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.14
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.14
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.14
PRK08275	554	putative oxidoreductase; Provisional	99.13
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.13
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.12
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.11
PLN02568	539	polyamine oxidase	99.11
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.11
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.1
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.1
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.1
PLN02815	594	L-aspartate oxidase	99.09
PRK10262	321	thioredoxin reductase; Provisional	99.08
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	99.07
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.07
PRK07395	553	L-aspartate oxidase; Provisional	99.07
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.07
PRK09077	536	L-aspartate oxidase; Provisional	99.07
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.07
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.06
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.06
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.06
PRK07512	513	L-aspartate oxidase; Provisional	99.06
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.06
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.06
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.05
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.05
KOG2852	380	consensus Possible oxidoreductase [General functio	99.05
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.05
PLN02268	435	probable polyamine oxidase	99.04
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.04
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.04
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.03
PRK07233	434	hypothetical protein; Provisional	99.03
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.02
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.02
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.01
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.0
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.0
PLN02612	567	phytoene desaturase	99.0
PLN02576	496	protoporphyrinogen oxidase	99.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.99
PRK09897	534	hypothetical protein; Provisional	98.99
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.98
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.97
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.97
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.97
PRK06370	463	mercuric reductase; Validated	98.97
PRK12839	572	hypothetical protein; Provisional	98.96
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.96
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.96
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.95
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.95
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.95
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.95
PLN02676	487	polyamine oxidase	98.94
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.94
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.93
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.93
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.93
PRK06116	450	glutathione reductase; Validated	98.93
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.93
PRK14694	468	putative mercuric reductase; Provisional	98.93
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.93
PRK06116	450	glutathione reductase; Validated	98.92
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.92
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.92
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.92
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.92
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.91
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.91
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.91
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.9
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.89
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.89
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.89
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.88
PRK12831	464	putative oxidoreductase; Provisional	98.88
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.87
PLN02507	499	glutathione reductase	98.87
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.86
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.86
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.86
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.85
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.85
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.85
PRK07846	451	mycothione reductase; Reviewed	98.85
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.85
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.84
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.84
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.84
PLN02507	499	glutathione reductase	98.83
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.82
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.82
PRK14727	479	putative mercuric reductase; Provisional	98.81
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.81
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.8
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.8
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.8
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.8
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.79
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.79
TIGR02053	463	MerA mercuric reductase. This model represents the	98.79
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.79
PRK13748	561	putative mercuric reductase; Provisional	98.78
PRK06370	463	mercuric reductase; Validated	98.78
PTZ00058	561	glutathione reductase; Provisional	98.78
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.77
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.77
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.77
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.77
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.75
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.75
PTZ00058	561	glutathione reductase; Provisional	98.75
PLN02546	558	glutathione reductase	98.75
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.75
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.74
TIGR02053	463	MerA mercuric reductase. This model represents the	98.74
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.74
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.74
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.74
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.74
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.73
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.73
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.72
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.72
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.72
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.71
PTZ00052	499	thioredoxin reductase; Provisional	98.69
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.69
PLN02546	558	glutathione reductase	98.69
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.69
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.68
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.67
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.67
PLN02852	491	ferredoxin-NADP+ reductase	98.66
PRK14694	468	putative mercuric reductase; Provisional	98.66
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.66
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.66
PTZ00052	499	thioredoxin reductase; Provisional	98.66
PRK14727	479	putative mercuric reductase; Provisional	98.64
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.64
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.64
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.64
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.64
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.63
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.63
PRK13748	561	putative mercuric reductase; Provisional	98.6
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.6
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.6
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.59
COG3573	552	Predicted oxidoreductase [General function predict	98.58
PRK10262	321	thioredoxin reductase; Provisional	98.58
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.58
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.57
PTZ00188	506	adrenodoxin reductase; Provisional	98.57
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.57
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.56
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.55
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.54
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.54
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.53
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.51
PRK07208	479	hypothetical protein; Provisional	98.51
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.5
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.5
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	98.47
COG3349	485	Uncharacterized conserved protein [Function unknow	98.46
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.45
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.45
PRK07846	451	mycothione reductase; Reviewed	98.45
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.45
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.43
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.42
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.4
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.39
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.37
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.37
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.35
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.32
PRK13984	604	putative oxidoreductase; Provisional	98.31
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.31
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.3
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.29
PLN02487	569	zeta-carotene desaturase	98.28
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.26
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.24
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.21
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.2
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.2
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.19
PRK12831	464	putative oxidoreductase; Provisional	98.17
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.14
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	98.13
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.13
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.11
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.11
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.1
PLN02529	738	lysine-specific histone demethylase 1	98.1
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.07
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.06
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.05
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.02
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.99
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	97.97
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.96
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.96
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.96
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.94
PRK02106	560	choline dehydrogenase; Validated	97.94
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.89
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.88
PLN03000	881	amine oxidase	97.87
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.81
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.81
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.79
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.79
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.77
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.75
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.75
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.75
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.73
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.71
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.7
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.67
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.66
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.66
PLN02976	1713	amine oxidase	97.65
PRK13984	604	putative oxidoreductase; Provisional	97.63
PLN02785	587	Protein HOTHEAD	97.63
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.6
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.59
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.59
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.57
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.54
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	97.49
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.46
KOG2755	334	consensus Oxidoreductase [General function predict	97.44
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.42
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.35
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.33
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	97.33
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.27
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.26
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.23
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.17
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.17
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.11
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.1
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.1
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.05
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.9
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.85
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.84
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.83
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.7
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.59
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.57
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.56
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.48
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.45
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.44
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.42
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	96.4
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.38
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.38
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.35
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.22
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.17
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.17
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.17
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.16
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.14
PLN02852	491	ferredoxin-NADP+ reductase	96.08
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.06
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.99
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.98
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.94
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.94
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.94
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.93
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.9
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.89
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.82
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.82
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.8
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.79
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.79
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.78
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.78
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.75
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.71
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.71
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.57
PRK04148	134	hypothetical protein; Provisional	95.53
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.51
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	95.48
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.42
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.4
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.39
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.37
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.29
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.29
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.29
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.28
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.28
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.28
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.25
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.23
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.22
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.19
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.15
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.15
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.12
PRK08328	231	hypothetical protein; Provisional	95.11
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.1
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.05
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.02
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.01
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.01
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.93
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.91
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.9
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.89
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.81
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.8
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.8
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.79
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.78
PRK08223	287	hypothetical protein; Validated	94.72
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.71
PRK07417	279	arogenate dehydrogenase; Reviewed	94.7
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.68
PLN02353	473	probable UDP-glucose 6-dehydrogenase	94.68
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.64
PRK06223	307	malate dehydrogenase; Reviewed	94.62
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.61
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.61
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.61
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.6
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.58
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.56
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.53
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.52
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.49
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.46
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.41
PLN02494	477	adenosylhomocysteinase	94.37
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.37
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.37
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	94.34
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	94.33
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.29
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	94.26
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	94.26
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	94.25
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.25
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.2
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.15
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	94.14
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.12
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	94.08
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	94.05
PRK09496	453	trkA potassium transporter peripheral membrane com	94.02

>PRK06753 hypothetical protein; Provisional

Probab=99.96  E-value=3.4e-27  Score=208.40  Aligned_cols=215  Identities=23%  Similarity=0.371  Sum_probs=173.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      .+|+|||||++|+++|+.|++.|++|+|+||++.+...+.++.+.+++.+.|+.+|+.+.+.........+.+++.+|..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~   80 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL   80 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence            37999999999999999999999999999999988878899999999999999999999888777777888888877766


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhh
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAK  218 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~  218 (300)
                      +...++.   .......++|..|.+.|.+.+++.+|+++++|++++.++++ +.|++++|+++.+|+||+|||.+|.+|+
T Consensus        81 ~~~~~~~---~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~~~vigadG~~S~vR~  156 (373)
T PRK06753         81 LNKVKLK---SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHFADGESEAFDLCIGADGIHSKVRQ  156 (373)
T ss_pred             Eeecccc---cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEECCCCEEecCEEEECCCcchHHHH
Confidence            5544432   12345678999999999999877889999999999987766 4588899989999999999999999999


Q ss_pred             hcCCC-CCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          219 WIGFS-EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       219 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      .++.. .+.+.++.++++.+..... +.......+++.+++++++|.++++.+|++.+..+
T Consensus       157 ~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~  216 (373)
T PRK06753        157 SVNADSKVRYQGYTCFRGLIDDIDL-KLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAK  216 (373)
T ss_pred             HhCCCCCceEcceEEEEEEeccccc-cCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccc
Confidence            99543 4566778788776543321 22223344556667778999999988887766543

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.96  E-value=1e-26  Score=205.87  Aligned_cols=210  Identities=26%  Similarity=0.387  Sum_probs=163.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~-~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+||+|||||++||++|+.|++.|++|+|+|+. ......+++..+.+++++.|+++|+.+.+................+
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            579999999999999999999999999999998 4555677999999999999999999877777666555555555444


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEc-CCcEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV-NGTRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~-~g~~~~ad~vV~A~G~  212 (300)
                      .....++..........+.+.+..+.+.|.+.+   ++++++++++|+.++.+++.+. ++++ +|+++.||+||+|||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~llVgADG~  160 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADLLVGADGA  160 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCEEEECCCC
Confidence            444444444444466788899999999999888   3589999999999999988855 8888 9999999999999999


Q ss_pred             ChHhhhhcCCC-CCc-cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEE
Q 022277          213 RSPIAKWIGFS-EPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVY  270 (300)
Q Consensus       213 ~s~~r~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  270 (300)
                      +|.+|+.+++. ... .+.+..+.  +......+.......++...+.+.++|++++...
T Consensus       161 ~S~vR~~~~~~~~~~~~y~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  218 (387)
T COG0654         161 NSAVRRAAGIAEFSGRDYGQTALV--ANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSS  218 (387)
T ss_pred             chHHHHhcCCCCccCCCCCceEEE--EEeecCCCCCCeEEEEecCCCceEEEecCCCcee
Confidence            99999999833 222 23444444  3443335666666666666666669999975444

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.96  E-value=1.6e-26  Score=203.92  Aligned_cols=213  Identities=16%  Similarity=0.156  Sum_probs=159.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc----CCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL----RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~----~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      +||+|||||++|+++|+.|++.|++|+|+|+.+..    ...+++..+.+++.++|+.+|+++.+.....+...+.+++.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            69999999999999999999999999999997432    23478999999999999999999988776667777777776


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      .+.....++..  ......+.+.|..|.+.|.+.+   ++++++++++++++..++++ +.|.+.++ +++||+||+|||
T Consensus        82 ~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~~-~~~adlvIgADG  157 (374)
T PRK06617         82 KASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKFDDK-QIKCNLLIICDG  157 (374)
T ss_pred             CCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEEcCC-EEeeCEEEEeCC
Confidence            66654444332  2233467899999999998876   35789999999999888777 44888776 899999999999


Q ss_pred             CChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          212 IRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       212 ~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      .+|.+|+.++........+.++...++.  ..++......++...+.++++|++++....++|..+
T Consensus       158 ~~S~vR~~l~~~~~~~~y~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~  221 (374)
T PRK06617        158 ANSKVRSHYFANEIEKPYQTALTFNIKH--EKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTS  221 (374)
T ss_pred             CCchhHHhcCCCcccccCCeEEEEEEec--cCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCC
Confidence            9999999997654333335566554443  334443323334444557789999886444444443

>PRK08013 oxidoreductase; Provisional

Probab=99.95  E-value=2.4e-26  Score=204.53  Aligned_cols=217  Identities=21%  Similarity=0.236  Sum_probs=153.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEchhHHHHHHHcCCcHHHHhc-cccccce
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGM  129 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~  129 (300)
                      ..+||+||||||+|+++|+.|++.|++|+|+|+.+.+..      .-++..+.++++++|+++|+++.+... ..+...+
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~   81 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM   81 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence            358999999999999999999999999999999986532      125567899999999999999998764 4566666


Q ss_pred             EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277          130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV  206 (300)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v  206 (300)
                      .+++........+........+..+.+.|..+.+.|.+.+   ++++++++++|++++.++++ +.|++.+|++++||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~a~lv  160 (400)
T PRK08013         82 EVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTLKDGSMLTARLV  160 (400)
T ss_pred             EEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEEcCCCEEEeeEE
Confidence            6665432111112211112223346789999999998776   47899999999999888776 4488889989999999


Q ss_pred             EEcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277          207 IGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      |+|||.+|.+|+.+++..+.. +.+..+...++.  ..+.......++..+++..++|++++....+++..
T Consensus       161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~  229 (400)
T PRK08013        161 VGADGANSWLRNKADIPLTFWDYQHHALVATIRT--EEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSL  229 (400)
T ss_pred             EEeCCCCcHHHHHcCCCccccccCcEEEEEEEec--cCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEc
Confidence            999999999999998765433 233344333333  33333322333444446668899876643344433

>PRK05868 hypothetical protein; Validated

Probab=99.95  E-value=2e-25  Score=196.41  Aligned_cols=218  Identities=20%  Similarity=0.255  Sum_probs=161.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      .||+|||||++|+++|+.|+++|++|+|+|+.+.+...|.++.+.+++++.|+++|+++.+.........+.+.+.++..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            58999999999999999999999999999999988888888999999999999999999887777777777777777765


Q ss_pred             EEEecCCC---CCCCcceeeecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          139 LRSFGFKD---EDASQEVRAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       139 ~~~~~~~~---~~~~~~~~~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      +.......   .........+.|..|.+.|.+.+ .+++++++++|++++.++++ +.|++.+|+++++|+||+|||.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvIgADG~~S  160 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDS-VRVTFERAAAREFDLVIGADGLHS  160 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCe-EEEEECCCCeEEeCEEEECCCCCc
Confidence            44322111   11112234678999999887765 58899999999999877666 458899999999999999999999


Q ss_pred             HhhhhcCC-CCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeE-EEEEEEcC
Q 022277          215 PIAKWIGF-SEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKV-YWFICHNN  277 (300)
Q Consensus       215 ~~r~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~  277 (300)
                      .+|+.+.. ..+.......+......+...+......++++++.++.++|..++.. ++++.+..
T Consensus       161 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  225 (372)
T PRK05868        161 NVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMD  225 (372)
T ss_pred             hHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEec
Confidence            99999943 32222222223333333332233333333468888888999987544 44454443

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.95  E-value=5e-26  Score=202.91  Aligned_cols=219  Identities=20%  Similarity=0.270  Sum_probs=159.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCcC----CCCceeeEchhHHHHHHHcCCcHHHHhc-cccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLR----TGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~-~~~~----~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~  130 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+. +...    ...++..+.+++.++|+++|+++.+.+. ..+...+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~   82 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME   82 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence            3589999999999999999999999999999996 3221    2356788999999999999999998763 56666677


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      +++..+.....++..........+.+.+..+.+.|.+.+   ++++++++++|++++.+++. +.|.+.+|++++||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         83 VWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEECCCCEEEeCEEE
Confidence            766543222222222112223345677888888887765   47899999999999887776 45888899999999999


Q ss_pred             EcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          208 GCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      +|||.+|.+|+.+++..+.. +++.++.+.+..+  .+.......++++++.+.++|++++..+++++..++
T Consensus       162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~  231 (405)
T PRK08850        162 GADGANSWLRRQMDIPLTHWDYGHSALVANVRTV--DPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEP  231 (405)
T ss_pred             EeCCCCChhHHHcCCCeeEEeeccEEEEEEEEcc--CCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCH
Confidence            99999999999998764432 3566666555432  233333445667777777899987655445555543

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.95  E-value=1.3e-25  Score=199.86  Aligned_cols=218  Identities=24%  Similarity=0.343  Sum_probs=164.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC-CCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-DGR  137 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~  137 (300)
                      .+|+|||||++||++|+.|++.|++|+|+||.+.+...|+++.+.+++.+.|+++|+++.+.........+.+.+. ...
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            6899999999999999999999999999999998888899999999999999999999998775555444444331 111


Q ss_pred             eEEEecCCC---CCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEE---cCCcEEEcCEEEE
Q 022277          138 ELRSFGFKD---EDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL---VNGTRIYANIVIG  208 (300)
Q Consensus       138 ~~~~~~~~~---~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~~~~ad~vV~  208 (300)
                      .........   ......+..+.|..|.+.|.+.+   ++++++++++|++++.+++++ .+++   .+++++++|+||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v-~v~~~~~~~~~~~~adlvIg  161 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSI-TATIIRTNSVETVSAAYLIA  161 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCce-EEEEEeCCCCcEEecCEEEE
Confidence            111111111   11123345689999999998876   468999999999998877663 3555   3345799999999


Q ss_pred             cCCCChHhhhhcCCCCCccccceEEEEEeeCCCCC-------CCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQ-------PFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       209 A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      |||.+|.+|+.++...+.|.++.+|++.+..+...       +.......+++++.+++.+|+++++..+++....
T Consensus       162 ADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~  237 (400)
T PRK06475        162 CDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITG  237 (400)
T ss_pred             CCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEc
Confidence            99999999999977778888999998876543211       1122345566888899999999887766665443

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.95  E-value=2.7e-25  Score=197.78  Aligned_cols=217  Identities=25%  Similarity=0.370  Sum_probs=168.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC-C
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-D  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~  135 (300)
                      ++.||+|||||++|+++|..|++.|++|+|+||.+.+...|+++.+.+++.++|+++|+++.+.........+.+++. .
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD   82 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence            458999999999999999999999999999999998888889999999999999999999888776666666666653 4


Q ss_pred             CceEEEecCCCC---CCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEc
Q 022277          136 GRELRSFGFKDE---DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGC  209 (300)
Q Consensus       136 ~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A  209 (300)
                      +..+..++....   ..+.....+.|..+.+.|.+.+   .+++++++++|++++.++++ +.+.+.+|+++.||+||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-VTVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-eEEEEcCCCEEecCEEEEC
Confidence            555544443221   1233456789999999998876   25899999999999887776 4488888888999999999


Q ss_pred             CCCChHhhhhc-CCCCCccccceEEEEEeeCCCCCCC--CCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277          210 DGIRSPIAKWI-GFSEPKYVGHCAYRGLGYYPNGQPF--EPKLNYIYGRGVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       210 ~G~~s~~r~~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  275 (300)
                      +|.+|.+|+.+ |. .+.+.++..+++.++.......  ......+.+++.+++++|+.++..+++++.
T Consensus       162 dG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~  229 (396)
T PRK08163        162 DGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVT  229 (396)
T ss_pred             CCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEE
Confidence            99999999988 54 5667788888877664322111  122345667788888999998876554443

>PRK07588 hypothetical protein; Provisional

Probab=99.95  E-value=3.2e-25  Score=196.92  Aligned_cols=217  Identities=22%  Similarity=0.339  Sum_probs=165.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      .||+|||||++|+++|+.|++.|++|+|+||.+.....+.++.+.+++++.++++|+++.+.........+.+++..+..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~   80 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR   80 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence            38999999999999999999999999999999887777888999999999999999999998877777788888777776


Q ss_pred             EEEecCCCC--CCCcceeeecHHHHHHHHHhcCC-CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          139 LRSFGFKDE--DASQEVRAVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       139 ~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~~-g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      +..++....  ..+..+..+.|..|.+.|.+.+. +++++++++|++++.++++ +.|.+++|+++++|+||+|||.+|.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588         81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDG-VRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCe-EEEEECCCCEEEeCEEEECCCCCcc
Confidence            655543321  22334567999999999988764 5899999999999988777 4488999988999999999999999


Q ss_pred             hhhhc-CCCC--CccccceEEEEEeeCCCCCCCC-CceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          216 IAKWI-GFSE--PKYVGHCAYRGLGYYPNGQPFE-PKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       216 ~r~~~-g~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      +|+.+ +...  +.+.+...+.  .......+.. ..+..+.+++.++.++|+++++.++++.+..+
T Consensus       160 vR~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~  224 (391)
T PRK07588        160 VRRLVFGPERDFEHYLGCKVAA--CVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAE  224 (391)
T ss_pred             chhhccCCccceEEEcCcEEEE--EEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcC
Confidence            99987 3222  2233433332  2222222222 23445566787888999998887665555433

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.94  E-value=6e-26  Score=191.82  Aligned_cols=214  Identities=40%  Similarity=0.745  Sum_probs=167.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEE-EcCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAV-KSEDG  136 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~  136 (300)
                      ..+|+|||||++||++|..|+++|++|+|+|+...++..|+++++..++++.++.+++.+.+.....+..+..+ ....|
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg   81 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG   81 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence            46899999999999999999999999999999999998999999999999999999999999998888886644 55778


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCC------eEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSS------ELAKIETSGNGVTILELVNGTRIYANIVIGCD  210 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~------~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~  210 (300)
                      .....+++..... +......|..+.+.|.+.++..+|+++.      ....++...... .|.+.+|.++++|++|+||
T Consensus        82 ~~~~~~~~~~~~~-~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~-~v~l~~g~~~~~dlligCD  159 (420)
T KOG2614|consen   82 KEVSRILYGEPDE-YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKL-VVHLSDGTTVKGDLLIGCD  159 (420)
T ss_pred             CeeEecccCCchH-HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccccc-ceecCCCcEEEeeEEEEcC
Confidence            8777776654321 1223344555666666666655676664      333344433332 3788999999999999999


Q ss_pred             CCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEE
Q 022277          211 GIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI  273 (300)
Q Consensus       211 G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  273 (300)
                      |++|.+|++|+...|.+.++++|++...++...++......+.+.+.+.|..|.....++|..
T Consensus       160 Ga~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~  222 (420)
T KOG2614|consen  160 GAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFL  222 (420)
T ss_pred             chHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEee
Confidence            999999999988779999999999999888777776555556666677777766666666555

>PRK06847 hypothetical protein; Provisional

Probab=99.94  E-value=7.9e-25  Score=193.49  Aligned_cols=217  Identities=26%  Similarity=0.401  Sum_probs=170.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...||+|||||++||++|+.|++.|++|+|+|+.+.+...|.++.+.+++.+.|+++|+.+.+.........+.+++..+
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g   82 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG   82 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence            45799999999999999999999999999999999887788999999999999999999998887777777777887777


Q ss_pred             ceEEEecCCCC--CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      ..+..++....  ........+.|..+.+.|.+.+  .|++++++++|++++.++++ +.|.+.+|+++.+|+||+|+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vI~AdG~  161 (375)
T PRK06847         83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTFSDGTTGRYDLVVGADGL  161 (375)
T ss_pred             CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEEcCCCEEEcCEEEECcCC
Confidence            66554432211  1112234678888888888776  47899999999999887766 4588888989999999999999


Q ss_pred             ChHhhhhc-CCC-CCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          213 RSPIAKWI-GFS-EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       213 ~s~~r~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      +|.+|+.+ +.. .+.+.+...+++.++.+.  .... ..++.+++.++.++|..++..++++....
T Consensus       162 ~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  225 (375)
T PRK06847        162 YSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA--EVDR-SLMYLGPTTKAGVVPLSEDLMYLFVTEPR  225 (375)
T ss_pred             CcchhhHhcCCCCCceeccceEEEEEecCCC--Cccc-eEEEeCCCcEEEEEcCCCCeEEEEEeccC
Confidence            99999988 543 567778877776554432  2222 35667778888899999887776665544

>PRK07045 putative monooxygenase; Reviewed

Probab=99.94  E-value=7.4e-25  Score=194.41  Aligned_cols=218  Identities=22%  Similarity=0.287  Sum_probs=156.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhcccc-ccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLE-IKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~  135 (300)
                      ..+||+||||||+|+++|+.|+++|++|+|+|+.+.+...+.+..+.+++.++|+++|+++.+...... ...+.+. ..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~-~~   82 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY-HD   82 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe-cC
Confidence            568999999999999999999999999999999998765556667999999999999999988765432 3334443 34


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCc-eEEEEEcCCcEEEcCEEEEcCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      +.....+++...........+.|..+.+.|.+.+   ++++++++++|++++.++++ ++.|++.+|+++.+|+||+|||
T Consensus        83 g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG  162 (388)
T PRK07045         83 KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADG  162 (388)
T ss_pred             CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCC
Confidence            5555444443222122234578888988888765   47899999999999987665 4568888998999999999999


Q ss_pred             CChHhhhhc-CCCC--CccccceEEEEEeeCCCCCCCCCceEEEE-eCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          212 IRSPIAKWI-GFSE--PKYVGHCAYRGLGYYPNGQPFEPKLNYIY-GRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       212 ~~s~~r~~~-g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      .+|.+|+.+ +...  +.+.+...+ +.+......  .....+++ .++++++++|..++...+++.+..+
T Consensus       163 ~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  230 (388)
T PRK07045        163 ARSMIRDDVLRMPAERVPYATPMAF-GTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPAD  230 (388)
T ss_pred             CChHHHHHhhCCCcccCCCCcceeE-EEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccc
Confidence            999999975 5442  334344333 333332221  11222334 3466778999998877776665543

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.94  E-value=5.9e-25  Score=202.38  Aligned_cols=221  Identities=23%  Similarity=0.296  Sum_probs=166.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      +..+||+|||||++|+++|+.|++.|++|+|+||.+.+...+++..+.++++++|+++|+.+.+.........+.+++..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   87 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK   87 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence            35789999999999999999999999999999999988778889999999999999999999988877777778887777


Q ss_pred             CceEEEecCCC-CCCC-cceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEc--CC--cEEEcCEE
Q 022277          136 GRELRSFGFKD-EDAS-QEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIV  206 (300)
Q Consensus       136 ~~~~~~~~~~~-~~~~-~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~v  206 (300)
                      +..+..+.... ...+ .....+.+..+.+.|.+.+   ++++|+++++|++++++++++. |+++  +|  ++++||+|
T Consensus        88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~v  166 (538)
T PRK06183         88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARYV  166 (538)
T ss_pred             CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEEE
Confidence            76665555311 1111 2234577888888887755   4899999999999999888744 6665  46  47999999


Q ss_pred             EEcCCCChHhhhhcCCCCCccccceEEEEEee--CCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          207 IGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGY--YPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      |+|||.+|.+|+.+|+..+.......|. .++  .............+++++....++|.+++...|.+.....
T Consensus       167 VgADG~~S~vR~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~  239 (538)
T PRK06183        167 VGCDGANSFVRRTLGVPFEDLTFPERWL-VVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPG  239 (538)
T ss_pred             EecCCCchhHHHHcCCeeeCCCccceEE-EEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCC
Confidence            9999999999999987654433233332 223  2222222233455667778888999999888776665443

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.94  E-value=3.8e-25  Score=198.09  Aligned_cols=213  Identities=20%  Similarity=0.270  Sum_probs=149.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--CCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--GGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+||.+.+..  .+.++.+.+++.+.|+.+|+++++.........+.+.+.
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            468999999999999999999999999999999987643  477889999999999999999998877666666666654


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcC-C--cEEEcCEEEE
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN-G--TRIYANIVIG  208 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~-g--~~~~ad~vV~  208 (300)
                      .+.....+...........+...+..+.+.|.+.+   +++++++++++++++.++++ +.|++.+ +  .+++||+||+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEE
Confidence            44333333322111112223344456777777665   47899999999999887776 3477653 2  3699999999


Q ss_pred             cCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCC-ceEEEEeCCeEEEEEEcCCCeEEEEE
Q 022277          209 CDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEP-KLNYIYGRGVRAGYVPVSPTKVYWFI  273 (300)
Q Consensus       209 A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~  273 (300)
                      |||.+|.+|+.++.....+. ...++...+....  +... ....++ ++++++++|++++..++++
T Consensus       176 ADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~  239 (415)
T PRK07364        176 ADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA--PHNDIAYERFW-PSGPFAILPLPGNRCQIVW  239 (415)
T ss_pred             eCCCCchhHHHhCCCceeecCCCEEEEEEEEccC--CCCCEEEEEec-CCCCeEEeECCCCCEEEEE
Confidence            99999999999987644332 2233333343322  2222 222344 4455679999988776543

>PRK06184 hypothetical protein; Provisional

Probab=99.94  E-value=1.3e-24  Score=198.70  Aligned_cols=216  Identities=21%  Similarity=0.201  Sum_probs=155.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+||||||+||++|+.|+++|++|+|+||.+.+...+++..+.++++++|+++|+.+.+.+.........++...+
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~   81 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG   81 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence            45899999999999999999999999999999999887788899999999999999999999988776666665555444


Q ss_pred             ceEEEecCCC------CCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE---cCCcEEEcCE
Q 022277          137 RELRSFGFKD------EDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNGTRIYANI  205 (300)
Q Consensus       137 ~~~~~~~~~~------~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~~~~ad~  205 (300)
                      ... ...+..      .........+.+..+.+.|.+.+  .+++++++++|++++++++++. +.+   .++++++||+
T Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~~i~a~~  159 (502)
T PRK06184         82 SVA-ESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVT-ARVAGPAGEETVRARY  159 (502)
T ss_pred             eEE-EeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE-EEEEeCCCeEEEEeCE
Confidence            322 222111      01112234677888888887766  4789999999999998887744 555   5556899999


Q ss_pred             EEEcCCCChHhhhhcCCCCCccccc--eEEEEEeeCCCCCCCCCceEEEEeCC-eEEEEEEcCCCeEEEEEEEc
Q 022277          206 VIGCDGIRSPIAKWIGFSEPKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRG-VRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       206 vV~A~G~~s~~r~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~  276 (300)
                      ||+|||.+|.+|+.+|+........  ..+......+.  .....+.++..+. ..+.++|++++..+++++..
T Consensus       160 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  231 (502)
T PRK06184        160 LVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG--LDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPL  231 (502)
T ss_pred             EEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec--CCCcceEEccCCCCcEEEEEEccCCCeEEEEEEc
Confidence            9999999999999998775544321  22222222221  1223344444443 67778999877655554443

>PRK07236 hypothetical protein; Provisional

Probab=99.94  E-value=2e-24  Score=191.40  Aligned_cols=202  Identities=22%  Similarity=0.318  Sum_probs=153.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-CCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~-~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      +...+|+|||||++||++|+.|++.|++|+|+||.+.+ ...|.++.+.+++.+.|+++|+.+.. ..........+.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~   82 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDR   82 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeC
Confidence            45689999999999999999999999999999999754 34677889999999999999997654 33444445555555


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      .+..+...+..       .....+..+.+.|.+.+++++++++++|++++.++++ +.|.+.+|++++||+||+|||.+|
T Consensus        83 ~g~~~~~~~~~-------~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vIgADG~~S  154 (386)
T PRK07236         83 DGRVVQRRPMP-------QTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-VTARFADGRRETADLLVGADGGRS  154 (386)
T ss_pred             CCCEeeccCCC-------ccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCCc
Confidence            56544332221       1224567888888888877889999999999988777 458899999999999999999999


Q ss_pred             Hhhhhc-CCCCCccccceEEEEEeeCCCC-CC----CCCceEEEEeCCeEEEEEEcCC
Q 022277          215 PIAKWI-GFSEPKYVGHCAYRGLGYYPNG-QP----FEPKLNYIYGRGVRAGYVPVSP  266 (300)
Q Consensus       215 ~~r~~~-g~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~p~~~  266 (300)
                      .+|+.+ +...+.|.++.+|++++..... ..    .......+++++.+++.+|+++
T Consensus       155 ~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (386)
T PRK07236        155 TVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPG  212 (386)
T ss_pred             hHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCC
Confidence            999998 5456778888888876542111 11    1233455667787888888864

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.94  E-value=2.5e-24  Score=191.31  Aligned_cols=217  Identities=19%  Similarity=0.234  Sum_probs=154.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEchhHHHHHHHcCCcHHHHhc-cccccce
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGM  129 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~  129 (300)
                      ...+||+|||||++|+++|+.|+++|++|+|+||.+.+..     ..+...+.+.+.++|+++|+++.+... ..+...+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM   83 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence            4568999999999999999999999999999999875431     234578899999999999999988753 4455556


Q ss_pred             EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      .+++..+.....++..........+.+++..+.+.|.+.+  .|++++++++|++++.++++ +.|++.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV  162 (392)
T PRK08773         84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDGRRLEAALAI  162 (392)
T ss_pred             EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCCCEEEeCEEE
Confidence            6665443322233322222223346788899988888776  48899999999999987776 44888888889999999


Q ss_pred             EcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277          208 GCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  275 (300)
                      +|+|.+|.+|+.+|+..+... .+.++...++.  ..+........+.+++...++|++++..++++.+
T Consensus       163 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~  229 (392)
T PRK08773        163 AADGAASTLRELAGLPVSRHDYAQRGVVAFVDT--EHPHQATAWQRFLPTGPLALLPFADGRSSIVWTL  229 (392)
T ss_pred             EecCCCchHHHhhcCCceEEEeccEEEEEEEEc--cCCCCCEEEEEeCCCCcEEEEECCCCceEEEEEC
Confidence            999999999999987755321 22222222222  2233333333345566677999998876554444

>PRK08244 hypothetical protein; Provisional

Probab=99.94  E-value=2.1e-24  Score=197.00  Aligned_cols=210  Identities=21%  Similarity=0.229  Sum_probs=152.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      .+||+||||||+||++|+.|++.|++|+||||.+.+...++++.+.++++++|+++|+++.+...........+....+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   81 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR   81 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence            48999999999999999999999999999999998877899999999999999999999998876655555444332211


Q ss_pred             eEEEecCCCC-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc--CC-cEEEcCEEEEcCC
Q 022277          138 ELRSFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV--NG-TRIYANIVIGCDG  211 (300)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g-~~~~ad~vV~A~G  211 (300)
                          +++... ........+.+..+.+.|.+.+  .|+++++++++++++.+++++. +.+.  +| ++++||+||+|||
T Consensus        82 ----~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~a~~vVgADG  156 (493)
T PRK08244         82 ----LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVE-VVVRGPDGLRTLTSSYVVGADG  156 (493)
T ss_pred             ----CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEE-EEEEeCCccEEEEeCEEEECCC
Confidence                112111 1122345678888888887665  4899999999999998877743 5553  45 4799999999999


Q ss_pred             CChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022277          212 IRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC  274 (300)
Q Consensus       212 ~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  274 (300)
                      .+|.+|+.+|+..+... .+..+.+.....  .+.......++.++++++++|++++.+++++.
T Consensus       157 ~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~  218 (493)
T PRK08244        157 AGSIVRKQAGIAFPGTDATFTAMLGDVVLK--DPPPSSVLSLCTREGGVMIVPLSGGIYRVLII  218 (493)
T ss_pred             CChHHHHhcCCCccCCCcceEEEEEEEEec--CCCCcceeEEEeCCceEEEEECCCCeEEEEEE
Confidence            99999999987654332 223333222222  22222334456777888899999987765543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.94  E-value=9.8e-25  Score=194.69  Aligned_cols=208  Identities=20%  Similarity=0.280  Sum_probs=147.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--------CCCCceeeEchhHHHHHHHcCCcHHHHhc-cccccc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--------RTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKG  128 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--------~~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~  128 (300)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+..        ....++..+.+++.++|+++|+++.+... ..+...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE   81 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence            479999999999999999999999999999998731        11234567899999999999999988753 455566


Q ss_pred             eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277          129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV  206 (300)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v  206 (300)
                      +.+++..+.....+...........+.+.+..+.+.|.+.+  .++++++++++++++.++++ +.|.+.+|++++||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~v  160 (405)
T PRK05714         82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCEE
Confidence            77776655433333322111123345788888888887766  37899999999999988777 4588888888999999


Q ss_pred             EEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCC
Q 022277          207 IGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPT  267 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  267 (300)
                      |+|||.+|.+|+.+|+..+... +.....+.......+........+.++++++++|++++
T Consensus       161 VgAdG~~S~vR~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~  220 (405)
T PRK05714        161 VAADGANSAVRRLAGCATREWD-YLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERD  220 (405)
T ss_pred             EEecCCCchhHHhcCCCccccc-CCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCC
Confidence            9999999999999987644322 21111222222222333222233456667889999754

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.94  E-value=1.7e-24  Score=193.61  Aligned_cols=212  Identities=22%  Similarity=0.343  Sum_probs=158.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhcccc----ccceEEE--
Q 022277           60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLE----IKGMAVK--  132 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~~~~~~~--  132 (300)
                      +|+|||||++||++|+.|+++| ++|+|+||.+.+...|.++.+.+++.+.|+.+|+.+.+......    .....+.  
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            7999999999999999999998 69999999998888899999999999999999998777653321    1111111  


Q ss_pred             c-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          133 S-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       133 ~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      + ..+..... ..   ........+.|..|.+.|.+.+++..++++++|++++.++++ +.|.+.+|.++++|+||+|||
T Consensus        82 ~~~~~~~~~~-~~---~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vVgADG  156 (414)
T TIGR03219        82 NGSDASYLGA-TI---APGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLFTDGTEYRCDLLIGADG  156 (414)
T ss_pred             ecCccceeee-ec---cccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEEcCCCEEEeeEEEECCC
Confidence            1 11111111 00   011223458899999999999877789999999999987777 568889998999999999999


Q ss_pred             CChHhhhhcC------CCCCccccceEEEEEeeCCCC----------CCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277          212 IRSPIAKWIG------FSEPKYVGHCAYRGLGYYPNG----------QPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       212 ~~s~~r~~~g------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  275 (300)
                      .+|.+|+.+.      ...|.+.|+.+|+++++....          ....+...++++++.+++++|+.+++..+++++
T Consensus       157 ~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~  236 (414)
T TIGR03219       157 IKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAF  236 (414)
T ss_pred             ccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEE
Confidence            9999999882      134678889999987653221          011123456778888888999999987665555


Q ss_pred             c
Q 022277          276 N  276 (300)
Q Consensus       276 ~  276 (300)
                      .
T Consensus       237 ~  237 (414)
T TIGR03219       237 I  237 (414)
T ss_pred             E
Confidence            4

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.94  E-value=8.6e-25  Score=194.04  Aligned_cols=216  Identities=20%  Similarity=0.282  Sum_probs=156.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      +..+||+|||||++|+++|+.|++.|++|+|+|+.+.+. ..++..+.+.+.++|+++|+++.+.....+...+.+++.+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~   83 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT   83 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence            456899999999999999999999999999999998653 3456677888999999999999988777777777777765


Q ss_pred             CceEE----EecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEE
Q 022277          136 GRELR----SFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIG  208 (300)
Q Consensus       136 ~~~~~----~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~  208 (300)
                      +....    .+...........+.+.+..+.+.|.+.+   +++. +++++|++++.++++ +.|++++|++++||+||+
T Consensus        84 g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~  161 (388)
T PRK07494         84 GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-VTVTLADGTTLSARLVVG  161 (388)
T ss_pred             CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-EEEEECCCCEEEEeEEEE
Confidence            54321    12111111223346788999999988776   2445 889999999888777 448888888999999999


Q ss_pred             cCCCChHhhhhcCCCCCc-cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          209 CDGIRSPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       209 A~G~~s~~r~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      |||.+|.+|+.+|+.... .+++.++...+..  ..+.......++...+.+.++|+++++.. ++++..
T Consensus       162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~-~v~~~~  228 (388)
T PRK07494        162 ADGRNSPVREAAGIGVRTWSYPQKALVLNFTH--SRPHQNVSTEFHTEGGPFTQVPLPGRRSS-LVWVVR  228 (388)
T ss_pred             ecCCCchhHHhcCCCceecCCCCEEEEEEEec--cCCCCCEEEEEeCCCCcEEEEECCCCcEE-EEEECC
Confidence            999999999999876433 2355555433332  23333332334445566778999987654 444443

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.94  E-value=1.5e-24  Score=194.88  Aligned_cols=214  Identities=17%  Similarity=0.203  Sum_probs=152.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----cCCcEEEEecCCCcCC------------CCceeeEchhHHHHHHHcCCcHHHHhc
Q 022277           59 EDIVIVGAGIAGLATAVSLQR----LGIGSLVIEQADSLRT------------GGTSLTLFKNGWSVLDALGVGSDLRSQ  122 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~----~G~~V~viE~~~~~~~------------~g~~~~~~~~~~~~l~~~g~~~~~~~~  122 (300)
                      +||+|||||++|+++|+.|++    .|++|+|||+.+.+..            .+++..+.++++++|+.+|+++.+...
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            699999999999999999999    8999999999653321            357899999999999999999998764


Q ss_pred             -cccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---C--CCeEEeCCeEEEEEEc-------CCc
Q 022277          123 -FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---P--PESVQFSSELAKIETS-------GNG  189 (300)
Q Consensus       123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~--g~~i~~~~~v~~i~~~-------~~~  189 (300)
                       ......+.+++..+.....++... ......+.+.+..+.+.|.+.+   .  +++++++++|++++.+       +++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~  159 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW  159 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence             345566666654443333333221 1223356788988888887766   2  4899999999999752       234


Q ss_pred             eEEEEEcCCcEEEcCEEEEcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCe
Q 022277          190 VTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTK  268 (300)
Q Consensus       190 ~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  268 (300)
                       +.|++.+|++++||+||+|||.+|.+|+.+|+...... .+.++.+.+.... .++.......+.+++.+.++|++++.
T Consensus       160 -v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~-~~~~~~~~~~f~~~g~~~~lPl~~~~  237 (437)
T TIGR01989       160 -VHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEE-ATENDVAWQRFLPTGPIALLPLPDNN  237 (437)
T ss_pred             -eEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEccc-CCCCCeEEEEECCCCCEEEeECCCCC
Confidence             55888999999999999999999999999988765442 2333433333322 12333333334466667789999887


Q ss_pred             EEEEEEE
Q 022277          269 VYWFICH  275 (300)
Q Consensus       269 ~~~~~~~  275 (300)
                      .++++..
T Consensus       238 ~~~~~~~  244 (437)
T TIGR01989       238 STLVWST  244 (437)
T ss_pred             EEEEEeC
Confidence            7654444

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.94  E-value=9.1e-25  Score=193.54  Aligned_cols=209  Identities=20%  Similarity=0.213  Sum_probs=151.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcCCC----CceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTG----GTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~~~----g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ||+||||||+|+++|+.|+++| ++|+|+||.+.+...    +++..+.+++.+.|+++|+++.+.........+.+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            7999999999999999999999 999999999876542    46789999999999999999888766655555555443


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      .......+...........+.++|..+.+.|.+.+   +|++++++++|++++.++++ +.|.+++|+++.||+||+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~ad~vV~AdG  159 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNGQQLRAKLLIAADG  159 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCCCEEEeeEEEEecC
Confidence            22211112211111122346789999999998876   37899999999999887776 448888888899999999999


Q ss_pred             CChHhhhhcCCCCCc-cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCC-eEEE
Q 022277          212 IRSPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPT-KVYW  271 (300)
Q Consensus       212 ~~s~~r~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~  271 (300)
                      .+|.+|+.+++..+. ..++..+...+....  +.......++.+++.++++|.+++ ...+
T Consensus       160 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~~~~~~~  219 (382)
T TIGR01984       160 ANSKVRELLSIPTEEHDYNQTALIANIRHEQ--PHQGCAFERFTPHGPLALLPLKDNYRSSL  219 (382)
T ss_pred             CChHHHHHcCCCCcccccCCEEEEEEEEecC--CCCCEEEEeeCCCCCeEECcCCCCCCEEE
Confidence            999999999866433 334555554444322  222222334555566778999988 4443

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07538 hypothetical protein; Provisional

Probab=99.93  E-value=7.7e-24  Score=189.26  Aligned_cols=217  Identities=21%  Similarity=0.277  Sum_probs=161.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      .||+|||||++||++|+.|+++|++|+|+||.+.+...|.++.+.+++.+.|+++|+++.+.........+.+++..+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~   80 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR   80 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence            48999999999999999999999999999999988778999999999999999999999988777766777777766665


Q ss_pred             EEEecCCCC-CCCcceeeecHHHHHHHHHhcC---CC-CeEEeCCeEEEEEEcCCceEEEEEcCC-----cEEEcCEEEE
Q 022277          139 LRSFGFKDE-DASQEVRAVERRILLETLANQL---PP-ESVQFSSELAKIETSGNGVTILELVNG-----TRIYANIVIG  208 (300)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~---~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~ad~vV~  208 (300)
                      +...+.... ........++|..|.+.|.+.+   .+ ..|+++++|++++.+++++. +.+.++     ++++||+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEEE
Confidence            543322111 1122345689999999887765   14 46999999999998877633 445432     4799999999


Q ss_pred             cCCCChHhhhhcCCC--CCccccceEEEEEeeCCCCCCCCCceEEEEe-CCeEEEEEEcCCC-------eEEEEEEEcCC
Q 022277          209 CDGIRSPIAKWIGFS--EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG-RGVRAGYVPVSPT-------KVYWFICHNNP  278 (300)
Q Consensus       209 A~G~~s~~r~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~~  278 (300)
                      |||.+|.+|+.++..  .+.+.+...|++.++.+...  .....++++ .+..++++|+.++       .+.|++.+..+
T Consensus       160 ADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~  237 (413)
T PRK07538        160 ADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFL--TGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRVD  237 (413)
T ss_pred             CCCCCHHHhhhhcCCCCCCcccceEEEEEeecCcccc--CCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcCC
Confidence            999999999999433  56778888888876654321  222223343 3566778998764       45566555443

>PRK09126 hypothetical protein; Provisional

Probab=99.93  E-value=2.2e-24  Score=191.68  Aligned_cols=217  Identities=18%  Similarity=0.225  Sum_probs=153.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-----CCCceeeEchhHHHHHHHcCCcHHHHhcc-ccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-----TGGTSLTLFKNGWSVLDALGVGSDLRSQF-LEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-----~~g~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~~  130 (300)
                      +.+||+||||||+|+++|+.|+++|++|+|+||.+.+.     ..|.++.+.+++.+.|+++|+++.+.... .+.....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~   81 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK   81 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence            46899999999999999999999999999999998642     34667788999999999999988876543 3344555


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      +++........++..........+.+.+..+.+.|.+.+   .|++++++++|++++.+++. +.|.+++|++++||+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~~~g~~~~a~~vI  160 (392)
T PRK09126         82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTLANGRRLTARLLV  160 (392)
T ss_pred             EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEEcCCCEEEeCEEE
Confidence            554332222222211111122334577778887777655   48999999999999887666 45888888899999999


Q ss_pred             EcCCCChHhhhhcCCCCC-ccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277          208 GCDGIRSPIAKWIGFSEP-KYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      +|||.+|.+|+.+|+... ...+...+......  ..+.......+++.+.+++++|.+++.+++++.+.
T Consensus       161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~  228 (392)
T PRK09126        161 AADSRFSATRRQLGIGADMHDFGRTMLVCRMRH--ELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLP  228 (392)
T ss_pred             EeCCCCchhhHhcCCCccccccCCeEEEEEEec--cCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECC
Confidence            999999999999976532 23344444333322  22223334456677778889999988776655443

>PTZ00367 squalene epoxidase; Provisional

Probab=99.93  E-value=6.8e-24  Score=193.76  Aligned_cols=218  Identities=18%  Similarity=0.187  Sum_probs=159.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-cCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~-~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+||+.. ......+..+++++.+.|+++|+++.+........++.+++.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~  111 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK  111 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence            568999999999999999999999999999999862 1123345678999999999999999887767677777777765


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC-----CCCeEEeCCeEEEEEEcCCc----eEEEEE--cC-------
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL-----PPESVQFSSELAKIETSGNG----VTILEL--VN-------  197 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~-----~g~~i~~~~~v~~i~~~~~~----~~~v~~--~~-------  197 (300)
                      +... ..++..   ......+.+..+.+.|.+.+     +++++.. .+|+++..+++.    +.+|++  .+       
T Consensus       112 G~~~-~i~~~~---~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~  186 (567)
T PTZ00367        112 GKQV-KLPYGA---GASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPEN  186 (567)
T ss_pred             CCEE-EecCCC---CCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccc
Confidence            6543 233321   22334456777777776544     5788864 578887655432    333433  33       


Q ss_pred             ----------------CcEEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEE
Q 022277          198 ----------------GTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGY  261 (300)
Q Consensus       198 ----------------g~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (300)
                                      ++++.||+||+|||.+|.+|+.++...+.+.+...|++........+.+....+++++++++++
T Consensus       187 ~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~  266 (567)
T PTZ00367        187 PFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILS  266 (567)
T ss_pred             ccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEE
Confidence                            4579999999999999999999987666666666776654333334445555677899999999


Q ss_pred             EEcCCCeEEEEEEEcCCC
Q 022277          262 VPVSPTKVYWFICHNNPT  279 (300)
Q Consensus       262 ~p~~~~~~~~~~~~~~~~  279 (300)
                      +|+++++.++++++..+.
T Consensus       267 yPl~~~~~r~lv~~~~~~  284 (567)
T PTZ00367        267 YRLDDNELRVLVDYNKPT  284 (567)
T ss_pred             EEcCCCeEEEEEEecCCc
Confidence            999999999888886653

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.93  E-value=6.8e-24  Score=189.27  Aligned_cols=212  Identities=19%  Similarity=0.293  Sum_probs=156.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      .+||+|||||++|+++|..|+++|  ++|+|+||.+...  ..+++..+.+++.++|+.+|+++.+.....+...+.+++
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD   80 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence            379999999999999999999995  9999999997643  347899999999999999999999887777776676665


Q ss_pred             CCCceE---EEecCCCC--CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277          134 EDGREL---RSFGFKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV  206 (300)
Q Consensus       134 ~~~~~~---~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v  206 (300)
                      ..+...   ..+.+...  ......+.+++..+.+.|.+.+  .|++++++++|++++.+++. +.|.+.+|+++.||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~v  159 (403)
T PRK07333         81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTLSDGSVLEARLL  159 (403)
T ss_pred             CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEE
Confidence            332111   11222111  1122345789999999998876  48899999999999887776 4488888888999999


Q ss_pred             EEcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022277          207 IGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF  272 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  272 (300)
                      |+|+|.+|.+|+.+|+..+.. .++.++....+..  .+.......++.++++++++|+++++.++.
T Consensus       160 I~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~  224 (403)
T PRK07333        160 VAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHE--RPHGGRAEEHFLPAGPFAILPLKGNRSSLV  224 (403)
T ss_pred             EEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcC--CCCCCEEEEEeCCCCceEEeECCCCCeEEE
Confidence            999999999999998764322 2444444333332  222233344455666778999999887643

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.93  E-value=4.2e-24  Score=189.47  Aligned_cols=213  Identities=21%  Similarity=0.288  Sum_probs=156.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC-----CceeeEchhHHHHHHHcCCcHHHHh-ccccccceEEEc
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG-----GTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKS  133 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~-----g~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~  133 (300)
                      ||+|||||++|+++|+.|++.|++|+|+||.+.++..     +++..+.+++.+.|+++|+++++.. .......+.++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            7999999999999999999999999999999876432     5778999999999999999999887 666666777776


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCD  210 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~  210 (300)
                      ..+.....+...........+.+.+..+.+.|.+.+  .+ ++++++++|++++.++++ +.+.+++|+++.+|+||+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~~vi~ad  159 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTLDDGQQLRARLLVGAD  159 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEECCCCEEEeeEEEEeC
Confidence            554432223221111223346788999999988876  23 899999999999887776 45888899889999999999


Q ss_pred             CCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277          211 GIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       211 G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  275 (300)
                      |.+|.+|+.+++..+.. .+...+......+  .+.......++.++++++++|.+++...+.+..
T Consensus       160 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~  223 (385)
T TIGR01988       160 GANSKVRQLAGIPTTGWDYGQSAVVANVKHE--RPHQGTAWERFTPTGPLALLPLPDNRSSLVWTL  223 (385)
T ss_pred             CCCCHHHHHcCCCccccccCCeEEEEEEEec--CCCCCEEEEEecCCCCEEEeECCCCCeEEEEEC
Confidence            99999999998654332 2233443333322  222222333445666788999999877655544

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07190 hypothetical protein; Provisional

Probab=99.93  E-value=1.1e-23  Score=190.68  Aligned_cols=216  Identities=19%  Similarity=0.264  Sum_probs=152.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..+.+++.++|+.+|+++.+............+.. +
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~-g   82 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWAN-G   82 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecC-C
Confidence            568999999999999999999999999999999998877899999999999999999999988775554444433332 2


Q ss_pred             ceEEEec--CCC-C-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277          137 RELRSFG--FKD-E-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCD  210 (300)
Q Consensus       137 ~~~~~~~--~~~-~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~  210 (300)
                      ..+....  +.. . ........+.+..+.+.|.+.+  .|++++++++|++++.+++++. +.+.+|++++|++||+||
T Consensus        83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~-v~~~~g~~v~a~~vVgAD  161 (487)
T PRK07190         83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL-TTLSNGERIQSRYVIGAD  161 (487)
T ss_pred             ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE-EEECCCcEEEeCEEEECC
Confidence            2221111  110 0 1122234567777777777655  4899999999999999888744 667778889999999999


Q ss_pred             CCChHhhhhcCCCCCccccceEEEEE-eeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022277          211 GIRSPIAKWIGFSEPKYVGHCAYRGL-GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC  274 (300)
Q Consensus       211 G~~s~~r~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  274 (300)
                      |.+|.+|+.+|+..+.......|... +..+...+.......+..+.+.++++|.+++...+++.
T Consensus       162 G~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~  226 (487)
T PRK07190        162 GSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVR  226 (487)
T ss_pred             CCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEE
Confidence            99999999999876654433323211 22222222212233344555666678998776654443

>PRK06185 hypothetical protein; Provisional

Probab=99.93  E-value=1.7e-23  Score=186.97  Aligned_cols=213  Identities=19%  Similarity=0.242  Sum_probs=149.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhc-cccccceEEEcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMAVKSE  134 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~  134 (300)
                      ...+||+|||||++|+++|+.|++.|++|+|+|+.+......++..+.+.+.++|+++|+++.+.+. ......+.++..
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~   83 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG   83 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence            3679999999999999999999999999999999876544556788999999999999999888663 334455555533


Q ss_pred             CCceEEEecCCCCC-CCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEE--cCCc-EEEcCEEE
Q 022277          135 DGRELRSFGFKDED-ASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL--VNGT-RIYANIVI  207 (300)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~--~~g~-~~~ad~vV  207 (300)
                       +......++.... .......+.+..+.+.|.+.+   ++++++++++|+++..+++.+..|.+  .+|+ +++||+||
T Consensus        84 -~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI  162 (407)
T PRK06185         84 -GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVV  162 (407)
T ss_pred             -CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEE
Confidence             3323333332221 123345678888888887755   47899999999999988777544443  4564 79999999


Q ss_pred             EcCCCChHhhhhcCCCCCcccc-ceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022277          208 GCDGIRSPIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF  272 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  272 (300)
                      +|||.+|.+|+.+|+..+.... ....  .+..+............+.++++++++|.+ +.+.+.
T Consensus       163 ~AdG~~S~vr~~~gi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~  225 (407)
T PRK06185        163 GADGRHSRVRALAGLEVREFGAPMDVL--WFRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCG  225 (407)
T ss_pred             ECCCCchHHHHHcCCCccccCCCceeE--EEecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEE
Confidence            9999999999999887554332 2222  223322222222233456677788899987 555433

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.93  E-value=4e-23  Score=189.86  Aligned_cols=222  Identities=23%  Similarity=0.369  Sum_probs=160.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-CCCC---ceeeEchhHHHHHHHcCCc--HHHHhccccc-cc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGG---TSLTLFKNGWSVLDALGVG--SDLRSQFLEI-KG  128 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~-~~~g---~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~-~~  128 (300)
                      ....+|+|||||++||++|+.|+++|++|+|+||.+.. ...|   .++.+.+++++.|+.+|++  +++....... ..
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~  158 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR  158 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence            35689999999999999999999999999999998632 2222   5688999999999999853  4444433221 11


Q ss_pred             e-EEEc-CCCceEEEecCCC--CCCC-cceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEc
Q 022277          129 M-AVKS-EDGRELRSFGFKD--EDAS-QEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYA  203 (300)
Q Consensus       129 ~-~~~~-~~~~~~~~~~~~~--~~~~-~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~a  203 (300)
                      + .+.+ ..+.....++...  ...+ .....+.|..|.+.|.+.+....++++++|++++.+++++. |.+.+|+++.+
T Consensus       159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~Vt-V~~~dG~ti~a  237 (668)
T PLN02927        159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVT-VVLENGQRYEG  237 (668)
T ss_pred             eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEE-EEECCCCEEEc
Confidence            2 1222 2344333333211  1111 23457899999999998885445788999999998877744 88999988999


Q ss_pred             CEEEEcCCCChHhhhhc-CCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          204 NIVIGCDGIRSPIAKWI-GFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       204 d~vV~A~G~~s~~r~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      |+||+|||.+|.+|+.+ +...+.+.++.+|++.++.............+.+.+.++.++|.++++++|+..+..+
T Consensus       238 DlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p  313 (668)
T PLN02927        238 DLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP  313 (668)
T ss_pred             CEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECC
Confidence            99999999999999998 7667888999999988876432211223445667788887888888888776655543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.93  E-value=6.5e-24  Score=185.98  Aligned_cols=218  Identities=22%  Similarity=0.294  Sum_probs=146.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhcccccc--ceEEEcC-C
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK--GMAVKSE-D  135 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~-~  135 (300)
                      +||+|||||++|+++|+.|+++|++|+||||.+.+...+++..+.+++.++|+++|+++.+........  ...+... .
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   81 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS   81 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence            699999999999999999999999999999999988888999999999999999999998887664333  2222222 1


Q ss_pred             Cce------EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEE
Q 022277          136 GRE------LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NG--TRIY  202 (300)
Q Consensus       136 ~~~------~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~  202 (300)
                      +..      .....+...........+.|..+.+.|.+.+  .++++++++++++++.+++++. +.+.   +|  ++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~-~~~~~~~~g~~~~i~  160 (356)
T PF01494_consen   82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVT-VVVRDGEDGEEETIE  160 (356)
T ss_dssp             TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEE-EEEEETCTCEEEEEE
T ss_pred             CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccc-cccccccCCceeEEE
Confidence            111      1111111123345567789999999998876  4799999999999998888744 3332   23  2689


Q ss_pred             cCEEEEcCCCChHhhhhcCCCCCccccc--eEEEEE-eeCCCCCCCCCceEEEEeCCeEEEEEEcCC-CeEEEEEEEcC
Q 022277          203 ANIVIGCDGIRSPIAKWIGFSEPKYVGH--CAYRGL-GYYPNGQPFEPKLNYIYGRGVRAGYVPVSP-TKVYWFICHNN  277 (300)
Q Consensus       203 ad~vV~A~G~~s~~r~~~g~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~  277 (300)
                      ||+||+|||.+|.+|+.++...+.....  ..+..+ .+.....+......+.......++++|..+ +...+++.+..
T Consensus       161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  239 (356)
T PF01494_consen  161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPF  239 (356)
T ss_dssp             ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEET
T ss_pred             EeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeeec
Confidence            9999999999999999998664433322  222221 222112122232333444566667999988 44444444443

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.92  E-value=1.6e-23  Score=186.41  Aligned_cols=216  Identities=19%  Similarity=0.241  Sum_probs=150.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCc-----CCCCceeeEchhHHHHHHHcCCcHHHHhccccccc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSL-----RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG  128 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~-----~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  128 (300)
                      ..+||+|||||++|+++|+.|+++   |++|+|+||....     ...+++..+.+.+.+.++++|+++.+.........
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~   81 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH   81 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence            568999999999999999999998   9999999995321     12356888999999999999999998876665555


Q ss_pred             eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCE
Q 022277          129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANI  205 (300)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~  205 (300)
                      +.+..........+...........+.+.+..+.+.|.+.+   ++++++++++|+++..++++ +.|.+.+|..+.+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~  160 (395)
T PRK05732         82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-VRVTLDDGETLTGRL  160 (395)
T ss_pred             EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-EEEEECCCCEEEeCE
Confidence            55443322211111111111122235677888877777654   47899999999999877776 448888888899999


Q ss_pred             EEEcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277          206 VIGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       206 vV~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  275 (300)
                      ||+|+|.+|.+|+.+++..+.. .++..+...+....  +........+.+++.++++|.++++..+++.+
T Consensus       161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~  229 (395)
T PRK05732        161 LVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSE--AHQGRAFERFTEHGPLALLPMSDGRCSLVWCH  229 (395)
T ss_pred             EEEecCCChhhHHhhCCCccceecCCEEEEEEEEecC--CCCCEEEEeecCCCCEEEeECCCCCeEEEEEC
Confidence            9999999999999997664333 34555544443321  11111222334555677899999987654443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.92  E-value=6.3e-23  Score=181.67  Aligned_cols=208  Identities=23%  Similarity=0.291  Sum_probs=140.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--CC----CCceeeEchhHHHHHHHcCCcHHHHhc-cccccceE
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--RT----GGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMA  130 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--~~----~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~  130 (300)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.+..  ..    +.+...+.++++++|+++|+++.+... ..+...+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            479999999999999999999999999999987522  11    224568999999999999999988653 34444444


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      .+...... ..+...........+.+.+..+...|.+.+   ++++++++++|++++.+++++ .|++.+|.+++||+||
T Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~-~v~~~~g~~~~~~lvI  160 (384)
T PRK08849         83 TWEHPECR-TRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGN-RVTLESGAEIEAKWVI  160 (384)
T ss_pred             EEeCCCce-EEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeE-EEEECCCCEEEeeEEE
Confidence            44322211 122211111122235566667777776654   578999999999999887774 4899999999999999


Q ss_pred             EcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCC-ceEEEEeCCeEEEEEEcCCCeEE
Q 022277          208 GCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEP-KLNYIYGRGVRAGYVPVSPTKVY  270 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~  270 (300)
                      +|||.+|.+|+.+|+...... .+.+..  ++.....+... .+..+...+... ++|++++...
T Consensus       161 gADG~~S~vR~~~gi~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~g~~~-~~pl~~~~~~  222 (384)
T PRK08849        161 GADGANSQVRQLAGIGITAWDYRQHCML--INVETEQPQQDITWQQFTPSGPRS-FLPLCGNQGS  222 (384)
T ss_pred             EecCCCchhHHhcCCCceeccCCCeEEE--EEEEcCCCCCCEEEEEeCCCCCEE-EeEcCCCceE
Confidence            999999999999987643332 222222  22222222222 233343334443 5899876543

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.92  E-value=6.4e-23  Score=190.85  Aligned_cols=212  Identities=19%  Similarity=0.213  Sum_probs=150.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+||||||+||++|+.|++. |++|+|||+.+.+...|++.+++++++++|+++|+++.+.+.......+.++...
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~  110 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD  110 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence            478999999999999999999995 9999999999888778999999999999999999999998877777777766643


Q ss_pred             Cc---eEEEe----cCCCCCCCcceeeecHHHHHHHHHhcCC--C--CeEEeCCeEEEEEEcCC--ceEEEEEc------
Q 022277          136 GR---ELRSF----GFKDEDASQEVRAVERRILLETLANQLP--P--ESVQFSSELAKIETSGN--GVTILELV------  196 (300)
Q Consensus       136 ~~---~~~~~----~~~~~~~~~~~~~i~~~~l~~~l~~~~~--g--~~i~~~~~v~~i~~~~~--~~~~v~~~------  196 (300)
                      +.   .+...    .............+++..+.+.|.+.+.  +  +.+++++++++++.+++  ..+.|++.      
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~  190 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH  190 (634)
T ss_pred             CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence            32   11110    1111111233456788888888887662  3  57889999999987643  22346664      


Q ss_pred             CC--cEEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCC--CCCCCCC-ceEEEEeCCeEEEEEEcCCCeE
Q 022277          197 NG--TRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYP--NGQPFEP-KLNYIYGRGVRAGYVPVSPTKV  269 (300)
Q Consensus       197 ~g--~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~  269 (300)
                      +|  ++++||+||+|||++|.+|+.+|+..........| ++++..  ...+... ...+..+.++.+.++|++++..
T Consensus       191 ~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~-~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~  267 (634)
T PRK08294        191 EGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAW-GVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYL  267 (634)
T ss_pred             CCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceE-EEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeE
Confidence            34  47999999999999999999998876554333323 233321  1212111 1223335677888999998864

>PLN02985 squalene monooxygenase

Probab=99.92  E-value=1.2e-22  Score=184.75  Aligned_cols=218  Identities=20%  Similarity=0.201  Sum_probs=153.5

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhc-cccccceEEEc
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGMAVKS  133 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~  133 (300)
                      ....+||+|||||++|+++|+.|++.|++|+|+||.......+.+..+.+++.+.|+++|+++.+... .....++.++.
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~  119 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK  119 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE
Confidence            34578999999999999999999999999999999876555667888999999999999999887653 34455555554


Q ss_pred             CCCceEEEecCCCCC----CCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEE--cCCc--EEE
Q 022277          134 EDGRELRSFGFKDED----ASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL--VNGT--RIY  202 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~----~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~--~~g~--~~~  202 (300)
                       ++... ..++....    .......+++..+.+.|.+.+   ++++++.+ +++++..+++.+.+|++  .+|+  ++.
T Consensus       120 -~g~~~-~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~  196 (514)
T PLN02985        120 -DGKEA-VAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTAL  196 (514)
T ss_pred             -CCEEE-EEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence             33322 22332111    112345788899999988766   46888765 57777666554444554  4564  467


Q ss_pred             cCEEEEcCCCChHhhhhcCCCCCc-cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          203 ANIVIGCDGIRSPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       203 ad~vV~A~G~~s~~r~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      ||+||+|||.+|.+|+.++...+. +++...+.   ......+.++...++++++.+++++|++++++++++....+
T Consensus       197 AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~  270 (514)
T PLN02985        197 APLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI---SKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPD  270 (514)
T ss_pred             CCEEEECCCCchHHHHHhccCCCcceeEeEEEE---EccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCC
Confidence            999999999999999999765442 33333332   11112233344566778888999999999998777666543

>PRK06126 hypothetical protein; Provisional

Probab=99.92  E-value=1.3e-22  Score=187.41  Aligned_cols=218  Identities=22%  Similarity=0.346  Sum_probs=151.3

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccc----cceE
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEI----KGMA  130 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~~~~  130 (300)
                      ....+||+|||||++||++|+.|+++|++|+|+||.+.+...+++..+.++++++|+++|+.+.+.+...+.    ....
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~   83 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY   83 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence            346789999999999999999999999999999999888778889999999999999999999887765432    1122


Q ss_pred             EEcCCCceEEEecCCCC--------------CCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEE
Q 022277          131 VKSEDGRELRSFGFKDE--------------DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTIL  193 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v  193 (300)
                      .....|..+..+.+...              ..+.....+.+..+.+.|.+.+   ++++|+++++|++++.+++++. +
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v  162 (545)
T PRK06126         84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-A  162 (545)
T ss_pred             EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-E
Confidence            23334555544443211              1122345678888888887765   4789999999999998877644 5


Q ss_pred             EEc---CCc--EEEcCEEEEcCCCChHhhhhcCCCCCccccc-eEEEEEeeCCC---CCCCC-CceEEEEeCCeEEEEEE
Q 022277          194 ELV---NGT--RIYANIVIGCDGIRSPIAKWIGFSEPKYVGH-CAYRGLGYYPN---GQPFE-PKLNYIYGRGVRAGYVP  263 (300)
Q Consensus       194 ~~~---~g~--~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~-~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~p  263 (300)
                      .+.   +|+  ++.+|+||+|||++|.+|+.+|+........ ..+......+.   ..+.. ....++++++.+..++|
T Consensus       163 ~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~  242 (545)
T PRK06126        163 TVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVA  242 (545)
T ss_pred             EEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEE
Confidence            443   353  6899999999999999999998764433211 11222222211   11112 22344456666767778


Q ss_pred             cCCCeEEEEE
Q 022277          264 VSPTKVYWFI  273 (300)
Q Consensus       264 ~~~~~~~~~~  273 (300)
                      .+++..+++.
T Consensus       243 ~~~~~~~~~~  252 (545)
T PRK06126        243 IDGRDEWLFH  252 (545)
T ss_pred             ECCCCeEEEE
Confidence            7766554444

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.92  E-value=1.2e-22  Score=180.29  Aligned_cols=213  Identities=19%  Similarity=0.274  Sum_probs=150.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCC-----ceeeEchhHHHHHHHcCCcHHHHh-ccccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG-----TSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g-----~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~  130 (300)
                      +.+||+|||||++|+++|+.|++.|++|+|+||.+.+...+     +...+.+++.++|+.+|+++.+.. ...+...+.
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   83 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR   83 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence            46899999999999999999999999999999998765422     447899999999999999888753 233444555


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      +.......+. +.......+...+.+++..+.+.|.+.+  .+ ++++ +++|++++.++++ +.|.+.+|.++.||+||
T Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI  160 (388)
T PRK07608         84 VFGDAHARLH-FSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA-ATLTLADGQVLRADLVV  160 (388)
T ss_pred             EEECCCceeE-eeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-EEEEECCCCEEEeeEEE
Confidence            5543322221 1111112233345688999999987766  24 7788 9999999877776 45888888889999999


Q ss_pred             EcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEE
Q 022277          208 GCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFIC  274 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  274 (300)
                      +|+|.+|.+|+.+|...+... ...++.  +.++...+.......+++++++++++|++++++.+++.
T Consensus       161 ~adG~~S~vr~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  226 (388)
T PRK07608        161 GADGAHSWVRSQAGIKAERRPYRQTGVV--ANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWS  226 (388)
T ss_pred             EeCCCCchHHHhcCCCccccccCCEEEE--EEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEE
Confidence            999999999999987644322 222332  22222223333344556788888899999997765443

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.92  E-value=1.7e-22  Score=179.44  Aligned_cols=214  Identities=19%  Similarity=0.271  Sum_probs=144.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      .+||+||||||+|+++|+.|++.|++|+|+||.+...  ...++..+.+++.++|+++|+++.+.........+.++.. 
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-   80 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD-   80 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence            5799999999999999999999999999999998632  2234556899999999999999999887777677776653 


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEE-cCCceEEEEE-cCCc--EEEcCEEEEc
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET-SGNGVTILEL-VNGT--RIYANIVIGC  209 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~-~~~~~~~v~~-~~g~--~~~ad~vV~A  209 (300)
                      +. ...+++.....+.....+.+..+.+.|.+.+  .|+++++++++++++. +++. ..|++ .+|+  +++||+||+|
T Consensus        81 g~-~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgA  158 (392)
T PRK08243         81 GR-RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGC  158 (392)
T ss_pred             CE-EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEEC
Confidence            33 3344444333233444556777777776554  4889999999999987 4444 34666 4664  6899999999


Q ss_pred             CCCChHhhhhcCCCC-Cccccc--eEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277          210 DGIRSPIAKWIGFSE-PKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       210 ~G~~s~~r~~~g~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      ||.+|.+|+.++... ..+.+.  ..|.+... + ..+......+...+..+.++.|.+++...+++.+.
T Consensus       159 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (392)
T PRK08243        159 DGFHGVSRASIPAGALRTFERVYPFGWLGILA-E-APPVSDELIYANHERGFALCSMRSPTRSRYYLQCP  226 (392)
T ss_pred             CCCCCchhhhcCcchhhceecccCceEEEEeC-C-CCCCCCceEEeeCCCceEEEecCCCCcEEEEEEec
Confidence            999999999996543 222222  23332221 1 11222222223345566656666665555444443

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.91  E-value=5.3e-22  Score=169.61  Aligned_cols=209  Identities=21%  Similarity=0.203  Sum_probs=142.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      +||+|||||++|+++|+.|++.|++|+|+||...+....++..+.++.++.+...+..     .........+....+..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~   75 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-----IVNLVRGARFFSPNGDS   75 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-----hhhheeeEEEEcCCCcE
Confidence            6999999999999999999999999999999987765556667777777766554321     11112233444444433


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC-CcEEEcCEEEEcCCCChH
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN-GTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~-g~~~~ad~vV~A~G~~s~  215 (300)
                      +. ...    .......++|.++.+.|.+.+  .|++++++++|+++..+++++. +.+.+ +.++++|+||+|+|.+|.
T Consensus        76 ~~-~~~----~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~a~~vv~a~G~~s~  149 (295)
T TIGR02032        76 VE-IPI----ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV-VIVRGGEGTVTAKIVIGADGSRSI  149 (295)
T ss_pred             EE-ecc----CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE-EEEcCccEEEEeCEEEECCCcchH
Confidence            21 111    133456789999999988877  4799999999999988877643 55443 357999999999999999


Q ss_pred             hhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEe----CCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          216 IAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG----RGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       216 ~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      +++.+++.........+++.....+..........++++    .+.+.|++|+++++..+.++...+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~  216 (295)
T TIGR02032       150 VAKKLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSA  216 (295)
T ss_pred             HHHhcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccC
Confidence            999887654222222334333443322222233444443    357899999999987766655543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06996 hypothetical protein; Provisional

Probab=99.91  E-value=3.4e-22  Score=177.80  Aligned_cols=218  Identities=19%  Similarity=0.159  Sum_probs=150.1

Q ss_pred             ccCCCCcEEEECCCHHHHHHHHHHHHcC----CcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277           54 ADVRKEDIVIVGAGIAGLATAVSLQRLG----IGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK  127 (300)
Q Consensus        54 ~~~~~~dVvIIGgG~aGl~~A~~L~~~G----~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  127 (300)
                      +....+||+||||||+|+++|+.|++.|    ++|+|+|+.+...  ...++..+.+.+.++|+++|+++.   ...+..
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~   83 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIE   83 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCccc
Confidence            3446789999999999999999999987    4799999986443  244789999999999999999886   233444


Q ss_pred             ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEE
Q 022277          128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG---TRIY  202 (300)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~  202 (300)
                      .+.+..........+.......+...+.+++..+.+.|.+.+  .++++++++++++++.++++ +.+.+.++   ++++
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~~~i~  162 (398)
T PRK06996         84 HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGARTLR  162 (398)
T ss_pred             EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcceEEe
Confidence            454443221111122222222233456789999999998877  36889999999999888777 44777754   5899


Q ss_pred             cCEEEEcCCC-ChHhhhhcCCCC-CccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeE--EEEEEEcC
Q 022277          203 ANIVIGCDGI-RSPIAKWIGFSE-PKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKV--YWFICHNN  277 (300)
Q Consensus       203 ad~vV~A~G~-~s~~r~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~  277 (300)
                      ||+||+|||. +|.+|+.+++.. +..+++.++.+.++.+.  +.+......+.+.+++.++|++++..  ++++++..
T Consensus       163 a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~  239 (398)
T PRK06996        163 ARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA--PRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCA  239 (398)
T ss_pred             eeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC--CCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECC
Confidence            9999999996 577888886653 44456667766555432  33322222334555677889987652  34444443

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.91  E-value=6.9e-22  Score=175.65  Aligned_cols=215  Identities=21%  Similarity=0.294  Sum_probs=146.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC------CCCceeeEchhHHHHHHHcCCcHHHHhc-cccccce
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR------TGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIKGM  129 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~------~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~  129 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+...      ...+...+.+.+.+.|+.+|+++.+... ..+...+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL   83 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence            56899999999999999999999999999999986432      1235578899999999999999887653 2333333


Q ss_pred             EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277          130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV  206 (300)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v  206 (300)
                      ..+......+ .+.......+...+.+++..+.+.|.+.+   ++++++++++|+++..++++ +.|.+.+|++++||+|
T Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~v  161 (391)
T PRK08020         84 ETWEWETAHV-VFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADGEEIQAKLV  161 (391)
T ss_pred             EEEeCCCCeE-EecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeCEE
Confidence            3333222221 12211111233345788999988887765   48899999999999887776 5588888888999999


Q ss_pred             EEcCCCChHhhhhcCCCCC--ccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          207 IGCDGIRSPIAKWIGFSEP--KYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      |+|+|.+|.+|+.+++...  .|. +.++...+..+.. +....+..+...+.. .++|+.++... ++++..
T Consensus       162 I~AdG~~S~vR~~~~~~~~~~~y~-~~~~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~p~~~~~~~-~v~~~~  230 (391)
T PRK08020        162 IGADGANSQVRQMAGIGVHGWQYR-QSCMLISVKCENP-PGDSTWQQFTPSGPR-AFLPLFDNWAS-LVWYDS  230 (391)
T ss_pred             EEeCCCCchhHHHcCCCccccCCC-ceEEEEEEEecCC-CCCEEEEEEcCCCCE-EEeECCCCcEE-EEEECC
Confidence            9999999999999976533  333 3334334443321 222233444444444 47899877544 344443

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.90  E-value=1.5e-21  Score=180.38  Aligned_cols=212  Identities=21%  Similarity=0.321  Sum_probs=146.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      +..+||+||||||+||++|+.|++.|++|+|+||.+.+...+++..+.++++++|+++|+.+.+............+..+
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~  100 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD  100 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence            36789999999999999999999999999999999988778899999999999999999999887765544333333322


Q ss_pred             CceEEEecCCCC--CCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEE--cCCc-EEEcCEEE
Q 022277          136 GRELRSFGFKDE--DASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILEL--VNGT-RIYANIVI  207 (300)
Q Consensus       136 ~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~--~~g~-~~~ad~vV  207 (300)
                       .....+.....  ........+.+..+.+.|.+.+   ++++++++++|++++.+++++. +.+  .+|. ++++|+||
T Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~ad~vV  178 (547)
T PRK08132        101 -EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGPYTLEADWVI  178 (547)
T ss_pred             -CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCcEEEEeCEEE
Confidence             23333332211  1122344577888888887755   4689999999999998877643 444  3454 69999999


Q ss_pred             EcCCCChHhhhhcCCCCCcccc-ceEEEEEeeCCCCCCCCCceEEEE----eCCeEEEEEEcCCCeEEE
Q 022277          208 GCDGIRSPIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYIY----GRGVRAGYVPVSPTKVYW  271 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~  271 (300)
                      +|||.+|.+|+.+|+....... ...+...+.....  +......++    .++..+++.|.+++.+.+
T Consensus       179 gADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (547)
T PRK08132        179 ACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKAD--FPTERWFWFDPPFHPGQSVLLHRQPDNVWRI  245 (547)
T ss_pred             ECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCC--CCCeeeEEEeccCCCCcEEEEEeCCCCeEEE
Confidence            9999999999999876544321 1112111222222  222222333    345566677777765543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.90  E-value=1.5e-21  Score=172.94  Aligned_cols=213  Identities=14%  Similarity=0.216  Sum_probs=140.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      .+||+|||||++|+++|+.|+++|++|+|+||.+...  ...++..+.++++++|+++|+++.+.........+.+....
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   81 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG   81 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence            4799999999999999999999999999999998632  22234458899999999999999998877666666665432


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEE-cCCceEEEEEc-CCc--EEEcCEEEEc
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET-SGNGVTILELV-NGT--RIYANIVIGC  209 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~-~~~~~~~v~~~-~g~--~~~ad~vV~A  209 (300)
                        ....+++.............+..+.+.|.+.+  .++.++++++++.+.. +++. ..|++. +|+  +++||+||+|
T Consensus        82 --~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGA  158 (390)
T TIGR02360        82 --QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGC  158 (390)
T ss_pred             --EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEEC
Confidence              23334443322222222334566667776655  3778999998888865 3344 346775 675  6899999999


Q ss_pred             CCCChHhhhhcCCCC-Cccccc--eEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeE-EEEEEEc
Q 022277          210 DGIRSPIAKWIGFSE-PKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKV-YWFICHN  276 (300)
Q Consensus       210 ~G~~s~~r~~~g~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~  276 (300)
                      ||.+|.+|+.++... +.+.++  ..|+++.....  +.... .++.+.+..+.++|+.++.. +|++.+.
T Consensus       159 DG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (390)
T TIGR02360       159 DGFHGVSRASIPAEVLKEFERVYPFGWLGILSETP--PVSHE-LIYSNHERGFALCSMRSATRSRYYVQVP  226 (390)
T ss_pred             CCCchhhHHhcCcccceeeeccCCcceEEEecCCC--CCCCc-eEEEeCCCceEEEeccCCCcceEEEEcC
Confidence            999999999985443 333333  24544332211  11111 24455566666778764433 3444443

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06834 hypothetical protein; Provisional

Probab=99.90  E-value=1.5e-21  Score=177.02  Aligned_cols=204  Identities=20%  Similarity=0.206  Sum_probs=140.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+||||||+|+++|+.|+++|++|+|+||.+.+. ...++..++++++++|+.+|+++.+...........+    
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~----   77 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGF----   77 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCcccccee----
Confidence            35899999999999999999999999999999998754 3457888999999999999999988764433221111    


Q ss_pred             CceEEEecCCCCCC-CcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          136 GRELRSFGFKDEDA-SQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       136 ~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                        ....+++..... ......+.+..+.+.|.+.+  .+++++++++|++++++++++ .|++.+|+++++|+||+|||.
T Consensus        78 --~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v-~v~~~~g~~i~a~~vVgADG~  154 (488)
T PRK06834         78 --AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGV-DVELSDGRTLRAQYLVGCDGG  154 (488)
T ss_pred             --eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeE-EEEECCCCEEEeCEEEEecCC
Confidence              001111111111 12234567778888887766  378999999999999988774 477888888999999999999


Q ss_pred             ChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcC-CCeEE
Q 022277          213 RSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVS-PTKVY  270 (300)
Q Consensus       213 ~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~  270 (300)
                      +|.+|+.+|+..+.......+ .++++....+..  +.....+.+...+.|.. ++..+
T Consensus       155 ~S~vR~~lgi~~~g~~~~~~~-~~~dv~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~  210 (488)
T PRK06834        155 RSLVRKAAGIDFPGWDPTTSY-LIAEVEMTEEPE--WGVHRDALGIHAFGRLEDEGPVR  210 (488)
T ss_pred             CCCcHhhcCCCCCCCCcceEE-EEEEEEecCCCC--cceeeCCCceEEEeccCCCCeEE
Confidence            999999999877655432211 223332221111  11233444455567776 55444

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.89  E-value=7.2e-21  Score=168.88  Aligned_cols=210  Identities=19%  Similarity=0.143  Sum_probs=140.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce-eeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS-LTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      +.+||+||||||||++||+.|++.|++|+|+||...++....+ ..+.+..++.+.......    .........++...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~----i~~~v~~~~~~~~~   77 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE----IERKVTGARIYFPG   77 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh----hheeeeeeEEEecC
Confidence            5799999999999999999999999999999999988654433 445554443332111100    11222222232221


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                      .......+      ....+.++|..+.++|++.+  .|++++.+++++++..++++++.+...++.+++|++||+|+|.+
T Consensus        78 ~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~  151 (396)
T COG0644          78 EKVAIEVP------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN  151 (396)
T ss_pred             CceEEecC------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence            11111111      14477899999999998777  48999999999999999888664555555689999999999999


Q ss_pred             hHhhhhcCCCCCc-cccceEEEEEeeCCCCCCCCCceEEE-----EeCCeEEEEEEcCCCeEEEEEEEcCCC
Q 022277          214 SPIAKWIGFSEPK-YVGHCAYRGLGYYPNGQPFEPKLNYI-----YGRGVRAGYVPVSPTKVYWFICHNNPT  279 (300)
Q Consensus       214 s~~r~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~  279 (300)
                      |.+++.+|..... ....++..-....+   .......++     ..++++.|+||..++.+.+.+.+....
T Consensus       152 s~l~~~lg~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~  220 (396)
T COG0644         152 SALARKLGLKDRKPEDYAIGVKEVIEVP---DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD  220 (396)
T ss_pred             hHHHHHhCCCCCChhheeEEeEEEEecC---CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC
Confidence            9999999877211 11122222223333   111222222     335899999999999998888866654

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.88  E-value=1.8e-20  Score=167.94  Aligned_cols=208  Identities=18%  Similarity=0.221  Sum_probs=133.2

Q ss_pred             ccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           54 ADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        54 ~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      +....+||+||||||+|+++|+.|+++|++|+|+||.... ...++..+.   ...++.+++++.+..  .....+.+..
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~-~k~cgg~i~---~~~l~~lgl~~~~~~--~~i~~~~~~~  108 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN-AKPCGGAIP---LCMVGEFDLPLDIID--RKVTKMKMIS  108 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC-CCCcccccc---HhHHhhhcCcHHHHH--HHhhhheEec
Confidence            4456799999999999999999999999999999998642 222333333   356677888766544  2334455555


Q ss_pred             CCCceEEEecCCCC-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC--CceEEEEEcC-------C--c
Q 022277          134 EDGRELRSFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILELVN-------G--T  199 (300)
Q Consensus       134 ~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~--~~~~~v~~~~-------g--~  199 (300)
                      +.+..+   .+... ........++|..|.+.|.+.+  .|++++.+ ++++++...  +..+.|.+.+       |  .
T Consensus       109 p~~~~v---~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~  184 (450)
T PLN00093        109 PSNVAV---DIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPK  184 (450)
T ss_pred             CCceEE---EecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCcc
Confidence            444322   22111 1123344689999999998776  58888765 577776532  2233455432       3  4


Q ss_pred             EEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCC--CCCCCceEEEEe----CCeEEEEEEcCCCeEEEEE
Q 022277          200 RIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG--QPFEPKLNYIYG----RGVRAGYVPVSPTKVYWFI  273 (300)
Q Consensus       200 ~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~  273 (300)
                      +++||+||+|||.+|.+++.+|.....  ...++......+..  ........++++    +++|.|++|..+ .+.+.+
T Consensus       185 ~v~a~~VIgADG~~S~vrr~lg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~  261 (450)
T PLN00093        185 TLEVDAVIGADGANSRVAKDIDAGDYD--YAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGT  261 (450)
T ss_pred             EEEeCEEEEcCCcchHHHHHhCCCCcc--eeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEEEE
Confidence            799999999999999999999865322  22333333333321  112234455555    467999999995 455555


Q ss_pred             E
Q 022277          274 C  274 (300)
Q Consensus       274 ~  274 (300)
                      .
T Consensus       262 g  262 (450)
T PLN00093        262 G  262 (450)
T ss_pred             E
Confidence            3

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.86  E-value=1.9e-20  Score=156.38  Aligned_cols=224  Identities=19%  Similarity=0.195  Sum_probs=171.6

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHh-ccccccceEEEc
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKS  133 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~  133 (300)
                      .....||+|||||.+|.++|+.|+|.|-+|+|+||+-.-...--+.-++|.+...|.++|+.+.+.. ..+...++.++.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk  121 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK  121 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence            3467899999999999999999999999999999987655555567788888999999999988876 455666777666


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcC--Cc--EEEcCEE
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN--GT--RIYANIV  206 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g~--~~~ad~v  206 (300)
                      ...+....++.......+.....+...+.+.|.+++   +++++..+ .|.++.++++-+.+|+.++  |+  +..|-+-
T Consensus       122 ~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~k~gee~~~~ApLT  200 (509)
T KOG1298|consen  122 DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT  200 (509)
T ss_pred             CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEecCCCceEEEecceE
Confidence            444433444444444555566777888999888877   67777765 4667766666666777764  33  5678999


Q ss_pred             EEcCCCChHhhhhcCC-CCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCCCC
Q 022277          207 IGCDGIRSPIAKWIGF-SEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG  281 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  281 (300)
                      |+|||..|.+|+.+-. +.+..  .+.|.|.+-.....+.++..++++++--.+++||++..+++..+-+..+.-+
T Consensus       201 vVCDGcfSnlRrsL~~~~v~~V--~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~P  274 (509)
T KOG1298|consen  201 VVCDGCFSNLRRSLCDPKVEEV--PSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLP  274 (509)
T ss_pred             EEecchhHHHHHHhcCCccccc--chheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCC
Confidence            9999999999999943 23322  3346677777777788888999999999999999999999998888875433

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.86  E-value=2e-19  Score=159.52  Aligned_cols=202  Identities=20%  Similarity=0.316  Sum_probs=131.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~-~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      +||+||||||+|+++|+.|++.|++|+|+|+. +.+..  ++..+.+   ..++.+++.+.+...  ...+..+..+++.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~--cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~~~   73 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKP--CGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISPSRV   73 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc--CcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcCCCc
Confidence            69999999999999999999999999999998 43322  3333443   457778887766542  3455666665553


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC------C--cEEEcCEEE
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN------G--TRIYANIVI  207 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~------g--~~~~ad~vV  207 (300)
                      .+. .....  .......++|..|.+.|.+.+  .|++++.+ +|+++..+++. +.|.+.+      |  .+++||+||
T Consensus        74 ~~~-~~~~~--~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~~v~~~~~~~~~~~~~~~i~a~~VI  148 (388)
T TIGR02023        74 PIK-VTIPS--EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-VTLTYRTPKKGAGGEKGSVEADVVI  148 (388)
T ss_pred             eee-eccCC--CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-EEEEEEeccccCCCcceEEEeCEEE
Confidence            321 11111  111223589999999998776  48888755 69999877765 4466553      2  369999999


Q ss_pred             EcCCCChHhhhhcCCCCCccccceEEEEEeeCCCC-CCC-CCceEEEE----eCCeEEEEEEcCCCeEEEEEE
Q 022277          208 GCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG-QPF-EPKLNYIY----GRGVRAGYVPVSPTKVYWFIC  274 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~  274 (300)
                      +|||.+|.+++.+|...+.. ...++......+.. ..+ ++...+++    .++.+.|++|..+ ...+.+.
T Consensus       149 ~AdG~~S~v~r~lg~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~~  219 (388)
T TIGR02023       149 GADGANSPVAKELGLPKNLP-RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIAVGTG  219 (388)
T ss_pred             ECCCCCcHHHHHcCCCCCCc-EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeEEeEE
Confidence            99999999999998763321 12234333322221 112 22333443    3567999999985 4544443

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=99.85  E-value=4e-19  Score=155.40  Aligned_cols=194  Identities=15%  Similarity=0.112  Sum_probs=126.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC----CCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT----GGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~----~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      +||+||||||+|+++|+.|++. ++|+|+||.+....    ..++..+++++.+.|+++|++......... .       
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~-------   72 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-Q-------   72 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-c-------
Confidence            7999999999999999999999 99999999986532    235678999999999999986321110000 0       


Q ss_pred             CCceEEEecCCC---CCCCcceeeecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEcCCceEEEEE-cCCc--EEEcCEEE
Q 022277          135 DGRELRSFGFKD---EDASQEVRAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIVI  207 (300)
Q Consensus       135 ~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~vV  207 (300)
                       ...........   ......+..++|.++.+.|.+.. .++++++++.+++++.++++ +.|.+ .+|+  +++||+||
T Consensus        73 -~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~~~~g~~~~i~a~~vV  150 (351)
T PRK11445         73 -IFAVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG-YHVIFRADGWEQHITARYLV  150 (351)
T ss_pred             -cceeeEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-EEEEEecCCcEEEEEeCEEE
Confidence             00011111111   01122345699999999888755 57899999999999987776 44665 4564  68999999


Q ss_pred             EcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEe---CCeEEEEEEcCCC
Q 022277          208 GCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG---RGVRAGYVPVSPT  267 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~  267 (300)
                      +|||.+|.+|+.++.... ...+.++.......  .+.+. ...+++   ...+.|.+|..+.
T Consensus       151 ~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~--~~~~~-~~~~f~~~~~~~~~W~~p~~~~  209 (351)
T PRK11445        151 GADGANSMVRRHLYPDHQ-IRKYVAIQQWFAEK--HPVPF-YSCIFDNEITDCYSWSISKDGY  209 (351)
T ss_pred             ECCCCCcHHhHHhcCCCc-hhhEEEEEEEecCC--CCCCC-cceEEeccCCCceEEEeCCCCc
Confidence            999999999999864422 11222322222222  12121 112222   2567899998653

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.84  E-value=2e-18  Score=153.24  Aligned_cols=205  Identities=17%  Similarity=0.205  Sum_probs=128.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      +||+||||||+|+++|+.|+++|++|+|+||..... ..++..+.   ...++++++++.+..  .......+..+.+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~--~~i~~~~~~~p~~~~   74 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIID--RRVTKMKMISPSNIA   74 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHH--hhhceeEEecCCceE
Confidence            589999999999999999999999999999986432 22233333   356777888766543  233345555544422


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc--CCceEEEEE--cC-----C--cEEEcCE
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETS--GNGVTILEL--VN-----G--TRIYANI  205 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~--~~~~~~v~~--~~-----g--~~~~ad~  205 (300)
                      + .+.... ........++|..|.+.|.+.+  .|++++.++ +++++..  .+..+.|++  .+     |  .+++|++
T Consensus        75 ~-~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~  151 (398)
T TIGR02028        75 V-DIGRTL-KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA  151 (398)
T ss_pred             E-EeccCC-CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence            2 111111 1122234689999999888877  588998774 7777532  233344543  22     3  3799999


Q ss_pred             EEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCC-CC-CCCceEEEEe----CCeEEEEEEcCCCeEEEEEEE
Q 022277          206 VIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNG-QP-FEPKLNYIYG----RGVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       206 vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~  275 (300)
                      ||+|||.+|.+++.+|....  .....+......+.. .. ......++++    +++|.|++|..+ ...+.+..
T Consensus       152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g~  224 (398)
T TIGR02028       152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGT  224 (398)
T ss_pred             EEECCCcchHHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEEe
Confidence            99999999999999986532  122233322333222 11 2233455554    567999999995 45555543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK10015 oxidoreductase; Provisional

Probab=99.81  E-value=2.3e-18  Score=154.04  Aligned_cols=165  Identities=24%  Similarity=0.282  Sum_probs=104.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCC-ceeeEchhHHHHHHHcCCcHH-HHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG-TSLTLFKNGWSVLDALGVGSD-LRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g-~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+||||||+|+++|+.|++.|++|+|+||.+.++... .+..+.....+.+. .++... ..........+.+...
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~   82 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAII-PGFAASAPVERKVTREKISFLTE   82 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHc-ccccccCCccccccceeEEEEeC
Confidence            46999999999999999999999999999999998764321 12222222222220 011110 0011111122333332


Q ss_pred             CCceEEEecCCCC-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          135 DGRELRSFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       135 ~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      ++.....+..... ......+.+.|..+.+.|.+++  .|++++.+++|+++..+++++..+.. ++..+.|++||+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG  161 (429)
T PRK10015         83 ESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADG  161 (429)
T ss_pred             CCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccC
Confidence            2221111111111 1122356788999988887766  48999999999999877666554544 345799999999999


Q ss_pred             CChHhhhhcCCC
Q 022277          212 IRSPIAKWIGFS  223 (300)
Q Consensus       212 ~~s~~r~~~g~~  223 (300)
                      .+|.+++.+|..
T Consensus       162 ~~s~v~~~lg~~  173 (429)
T PRK10015        162 VNSMLGRSLGMV  173 (429)
T ss_pred             cchhhhcccCCC
Confidence            999999999764

>PLN02697 lycopene epsilon cyclase

Probab=99.80  E-value=2.4e-17  Score=149.40  Aligned_cols=200  Identities=21%  Similarity=0.305  Sum_probs=126.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+||||||+|+++|..|++.|++|+|+|+......   ..+++.   ..++.+++.+.+...   ......+..++
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~---n~GvW~---~~l~~lgl~~~i~~~---w~~~~v~~~~~  177 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVWE---DEFKDLGLEDCIEHV---WRDTIVYLDDD  177 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC---ccccch---hHHHhcCcHHHHHhh---cCCcEEEecCC
Confidence            358999999999999999999999999999998643221   122222   346667765443321   11222222222


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      ....        ....+..++|..|.+.|.+.+  .|+++ ++++|+++..+++++..+.+.+|.++.|++||+|+|.+|
T Consensus       178 ~~~~--------~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        178 KPIM--------IGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             ceee--------ccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            2211        123344689999999998877  47887 678999998877764435667788899999999999999


Q ss_pred             HhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEe---------------CCeEEEEEEcCCCeEEE-EEEE
Q 022277          215 PIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYG---------------RGVRAGYVPVSPTKVYW-FICH  275 (300)
Q Consensus       215 ~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~-~~~~  275 (300)
                      ...-.+....+....+.++...++.... +++....++++               ...+.|++|.+++++.+ ...+
T Consensus       249 ~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~-~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l  324 (529)
T PLN02697        249 GRLLQYEVGGPRVCVQTAYGVEVEVENN-PYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCL  324 (529)
T ss_pred             hhhhccccCCCCcccEEEEEEEEEecCC-CCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeee
Confidence            3211111112344456666656665432 23322223322               12578999999999887 4444

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.80  E-value=7.1e-18  Score=151.06  Aligned_cols=168  Identities=23%  Similarity=0.277  Sum_probs=106.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc-eeeEchhHHHHH-HHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-SLTLFKNGWSVL-DALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~-~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+||||||+|+++|+.|+++|++|+|+||.+.++.... +..+.....+.+ ..+.....+ ........+.+...
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~-~~~~~~~~~~~~~~   82 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPV-ERLITHEKLAFMTE   82 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcc-cceeeeeeEEEEcC
Confidence            469999999999999999999999999999999987653211 112222222211 111000000 01111112233333


Q ss_pred             CCceEEEecCCC-CCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          135 DGRELRSFGFKD-EDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       135 ~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      .+.....+.... .......+.+.|.++.+.|.+.+  .|++++.+++|+++..+++.++.+. .+|.++.|++||+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G  161 (428)
T PRK10157         83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG  161 (428)
T ss_pred             CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeC
Confidence            332211111111 11123356788999999888876  5899999999999987776654444 4566899999999999


Q ss_pred             CChHhhhhcCCCCCc
Q 022277          212 IRSPIAKWIGFSEPK  226 (300)
Q Consensus       212 ~~s~~r~~~g~~~~~  226 (300)
                      .+|.+++.+|+..+.
T Consensus       162 ~~s~l~~~lgl~~~~  176 (428)
T PRK10157        162 VNSILAEKLGMAKRV  176 (428)
T ss_pred             CCHHHHHHcCCCCCC
Confidence            999999999876433

>PLN02463 lycopene beta cyclase

Probab=99.78  E-value=1e-16  Score=143.26  Aligned_cols=197  Identities=21%  Similarity=0.324  Sum_probs=125.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+.... ......   ..+.++.+++.+.+.... .  ...+...++
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~---w~~~l~~lgl~~~l~~~w-~--~~~v~~~~~   99 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGV---WVDEFEALGLLDCLDTTW-P--GAVVYIDDG   99 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccch---HHHHHHHCCcHHHHHhhC-C--CcEEEEeCC
Confidence            468999999999999999999999999999999764321 111111   134567778766554322 1  111111111


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      ..        ......+..++|.++.+.|.+++  .|++++ ..+|++++..+++ +.|.+++|.+++||+||+|+|.+|
T Consensus       100 ~~--------~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        100 KK--------KDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK-SLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             CC--------ccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECcCCCc
Confidence            10        01123455689999999998877  478876 5799999887766 558899998999999999999998


Q ss_pred             HhhhhcCCCCCcccc-ceEEEEEeeCCCCCCCCCceEEE--E-----eC-----------CeEEEEEEcCCCeEEEEEE
Q 022277          215 PIAKWIGFSEPKYVG-HCAYRGLGYYPNGQPFEPKLNYI--Y-----GR-----------GVRAGYVPVSPTKVYWFIC  274 (300)
Q Consensus       215 ~~r~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~-----~~-----------~~~~~~~p~~~~~~~~~~~  274 (300)
                      .+.+.   ..+...+ +.++...++.+.. +++....++  +     +.           -.+.|++|.+++++.+-.+
T Consensus       170 ~l~~~---~~~~~~g~Q~a~Gi~~ev~~~-p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT  244 (447)
T PLN02463        170 CLVQY---DKPFNPGYQVAYGILAEVDSH-PFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEET  244 (447)
T ss_pred             CccCC---CCCCCccceeeeeEEeecCCC-CcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEee
Confidence            76532   2233333 3445445555432 222111111  1     10           2478999999998765444

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.74  E-value=2.7e-16  Score=141.29  Aligned_cols=216  Identities=21%  Similarity=0.200  Sum_probs=133.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC---CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHH--HHh-ccccccceEEEc
Q 022277           60 DIVIVGAGIAGLATAVSLQRLG---IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD--LRS-QFLEIKGMAVKS  133 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G---~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~--~~~-~~~~~~~~~~~~  133 (300)
                      ||+|||||++|..+|..|++.+   ++|+|||+...+. .+-+.+..|....+++.+|+.+.  +.+ ......++.+.+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~   79 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN   79 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence            7999999999999999999998   8999999887653 56667888888889999999876  433 334445666655


Q ss_pred             CCCc-eEEEecCCC------------------------------------------------CCCCcceeeecHHHHHHH
Q 022277          134 EDGR-ELRSFGFKD------------------------------------------------EDASQEVRAVERRILLET  164 (300)
Q Consensus       134 ~~~~-~~~~~~~~~------------------------------------------------~~~~~~~~~i~~~~l~~~  164 (300)
                      +... .-...+|..                                                .......+.++|.++.+.
T Consensus        80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~  159 (454)
T PF04820_consen   80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF  159 (454)
T ss_dssp             SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred             cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence            3321 011112210                                                001234567999999999


Q ss_pred             HHhcC--CCCeEEeCCeEEEEEEcCCc-eEEEEEcCCcEEEcCEEEEcCCCChHhhhhc-CCCCCccccc----eEEEEE
Q 022277          165 LANQL--PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFSEPKYVGH----CAYRGL  236 (300)
Q Consensus       165 l~~~~--~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~-g~~~~~~~~~----~~~~~~  236 (300)
                      |.+.+  .|++++.++ |+++..++++ +..|++++|++++||+||+|+|..+.+.++. +.........    .++...
T Consensus       160 L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~  238 (454)
T PF04820_consen  160 LRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQ  238 (454)
T ss_dssp             HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEE
T ss_pred             HHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEe
Confidence            98877  699998875 7777776554 5679999999999999999999999876663 3222222211    222222


Q ss_pred             eeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCCC
Q 022277          237 GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTP  280 (300)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  280 (300)
                      ++...  +..........+.+|+|.+|++++... ..++.....
T Consensus       239 ~~~~~--~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~  279 (454)
T PF04820_consen  239 VPNED--PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI  279 (454)
T ss_dssp             EE-SS--CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS
T ss_pred             cCcCC--CCCCceeEEecCCceEEEccCCCcceE-EEEeccccC
Confidence            33322  333333345568899999999998776 555555433

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.73  E-value=1.5e-15  Score=133.86  Aligned_cols=194  Identities=23%  Similarity=0.281  Sum_probs=122.1

Q ss_pred             cEEEECCCHHHHHHHHHH--HHcCCcEEEEecCCCcC-CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           60 DIVIVGAGIAGLATAVSL--QRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L--~~~G~~V~viE~~~~~~-~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ||+|||||+||+++|+.|  ++.|.+|+|||+.+... +..+.+.......      +..+.+..  .......+...++
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~------~~~~~~v~--~~w~~~~v~~~~~   72 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDL------GPLDSLVS--HRWSGWRVYFPDG   72 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccc------cchHHHHh--eecCceEEEeCCC
Confidence            899999999999999999  77899999999988652 2222333222211      11122211  1222333433333


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCC-CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~-g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      ....        ..+.+..+++..|.+.+.+.+. +..+.++++|++++..++. +.|.+++|.+++|++||+|+|..+.
T Consensus        73 ~~~~--------~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~-~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   73 SRIL--------IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDG-VLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             ceEE--------cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCce-EEEEECCCCEEEeeEEEECCCcccc
Confidence            3211        1245668999999999998884 5567889999999988875 4488999999999999999996665


Q ss_pred             hhhhcCCCCCccccceEEEEEeeCCCCCCCCC--ceEEEEe------CCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          216 IAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEP--KLNYIYG------RGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       216 ~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      ..       .....++.+...++.+.. .++.  ...|.+.      .-.+.|++|.+++++.+-.++-.+
T Consensus       144 ~~-------~~~~~Q~f~G~~v~~~~~-~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~  206 (374)
T PF05834_consen  144 KA-------RPLGLQHFYGWEVETDEP-VFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP  206 (374)
T ss_pred             cc-------cccccceeEEEEEeccCC-CCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC
Confidence            21       111123333323444332 2322  2222222      235788999999998775444333

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.73  E-value=1.7e-16  Score=131.92  Aligned_cols=138  Identities=19%  Similarity=0.225  Sum_probs=97.8

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCC--ce-----eeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG--TS-----LTLFKNGWSVLDALGVGSDLRSQFLEIK  127 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g--~~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~  127 (300)
                      ....+||+|||||++|+++|+.|++.|++|+|+|+...++.+-  .+     ..+......+++++++...         
T Consensus        22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~---------   92 (257)
T PRK04176         22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK---------   92 (257)
T ss_pred             HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce---------
Confidence            3457999999999999999999999999999999998764211  11     1222333445555544210         


Q ss_pred             ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC-ceEEEEEcC-------
Q 022277          128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILELVN-------  197 (300)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~-~~~~v~~~~-------  197 (300)
                           .             .  ....+.+++.++...|.+.+  .|++++++++|+++..+++ .+.+|.+..       
T Consensus        93 -----~-------------~--~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g  152 (257)
T PRK04176         93 -----E-------------V--EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG  152 (257)
T ss_pred             -----e-------------e--cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC
Confidence                 0             0  11134467778888887766  5899999999999987666 555555431       


Q ss_pred             ----CcEEEcCEEEEcCCCChHhhhhcC
Q 022277          198 ----GTRIYANIVIGCDGIRSPIAKWIG  221 (300)
Q Consensus       198 ----g~~~~ad~vV~A~G~~s~~r~~~g  221 (300)
                          ..++.|++||+|+|+++.+.+.+.
T Consensus       153 ~~~~~~~i~Ak~VI~ATG~~a~v~~~l~  180 (257)
T PRK04176        153 LHVDPLTIEAKAVVDATGHDAEVVSVLA  180 (257)
T ss_pred             CCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence                247999999999999999888773

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.72  E-value=2.3e-15  Score=133.73  Aligned_cols=142  Identities=21%  Similarity=0.312  Sum_probs=93.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccc-eEEEcCCCce
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG-MAVKSEDGRE  138 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~  138 (300)
                      ||+|||||++|+++|+.|++.|++|+|+|+.+... ....+.++...   ++.+++.+.+..   .... ..+...... 
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~-   72 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDDD---LSDLGLADCVEH---VWPDVYEYRFPKQP-   72 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHhh---hhhhchhhHHhh---cCCCceEEecCCcc-
Confidence            79999999999999999999999999999987643 22233333322   233333211111   1111 111111110 


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                              ......+..+++..+.+.|.+.+  .+++++ ..+|++++.+++..+.|.+++|++++|++||+|+|.+|.+
T Consensus        73 --------~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~  143 (388)
T TIGR01790        73 --------RKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLV  143 (388)
T ss_pred             --------hhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhc
Confidence                    11134455689999999998777  367775 6688888877444466888888889999999999999965


Q ss_pred             hh
Q 022277          217 AK  218 (300)
Q Consensus       217 r~  218 (300)
                      ++
T Consensus       144 ~~  145 (388)
T TIGR01790       144 QY  145 (388)
T ss_pred             cc
Confidence            43

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.71  E-value=5.3e-16  Score=128.59  Aligned_cols=136  Identities=21%  Similarity=0.308  Sum_probs=94.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc--e-----eeEchhHHHHHHHcCCcHHHHhccccccc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT--S-----LTLFKNGWSVLDALGVGSDLRSQFLEIKG  128 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~--~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  128 (300)
                      ...+||+|||||++||++|+.|+++|++|+|+||+..++.+..  +     ..+.....++++++++..           
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~-----------   87 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRY-----------   87 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCe-----------
Confidence            3579999999999999999999999999999999987742210  0     011122333444443320           


Q ss_pred             eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC--ceEEEEEcC-------
Q 022277          129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN--GVTILELVN-------  197 (300)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~--~~~~v~~~~-------  197 (300)
                         .               ..+..++..++.++.+.|.+++  .|++++++++|+++..+++  .+.+|.++.       
T Consensus        88 ---~---------------~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g  149 (254)
T TIGR00292        88 ---E---------------DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG  149 (254)
T ss_pred             ---e---------------eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence               0               0112234456778888887666  4899999999999988766  456666542       


Q ss_pred             ----CcEEEcCEEEEcCCCChHhhhhc
Q 022277          198 ----GTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       198 ----g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                          ...+.|++||+|||..+.+.+.+
T Consensus       150 ~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       150 LHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             CCCCCEEEEcCEEEEeecCCchHHHHH
Confidence                23689999999999988766555

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.69  E-value=6.2e-16  Score=121.11  Aligned_cols=132  Identities=23%  Similarity=0.291  Sum_probs=91.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc-------eeeEchhHHHHHHHcCCcHHHHhccccccce
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-------SLTLFKNGWSVLDALGVGSDLRSQFLEIKGM  129 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  129 (300)
                      ..+||+||||||+||++|+.|++.|++|.|+|++..++.+-.       .+.+...+..+|+++|+.-.           
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~-----------   84 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE-----------   84 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E-----------
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE-----------
Confidence            579999999999999999999999999999999988753211       24456667788888776311           


Q ss_pred             EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC-CceEEEEEc------CC--
Q 022277          130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG-NGVTILELV------NG--  198 (300)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~-~~~~~v~~~------~g--  198 (300)
                                        .....++..+..++...|..++  .|++|+..+.|.++...+ +++.+|.++      .|  
T Consensus        85 ------------------~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glH  146 (230)
T PF01946_consen   85 ------------------EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLH  146 (230)
T ss_dssp             ------------------E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T
T ss_pred             ------------------EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcC
Confidence                              1134456677778887777655  699999999999998777 666667664      22  


Q ss_pred             ---cEEEcCEEEEcCCCChHhh
Q 022277          199 ---TRIYANIVIGCDGIRSPIA  217 (300)
Q Consensus       199 ---~~~~ad~vV~A~G~~s~~r  217 (300)
                         -.+++++||.|||+-+.+.
T Consensus       147 vDPl~i~ak~ViDaTGHda~v~  168 (230)
T PF01946_consen  147 VDPLTIRAKVVIDATGHDAEVV  168 (230)
T ss_dssp             -B-EEEEESEEEE---SSSSST
T ss_pred             CCcceEEEeEEEeCCCCchHHH
Confidence               3799999999999877543

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.69  E-value=2.9e-16  Score=133.27  Aligned_cols=153  Identities=20%  Similarity=0.251  Sum_probs=98.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-----CCCceeeEchh--HHHHHHHcC----CcHHHHhcccc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-----TGGTSLTLFKN--GWSVLDALG----VGSDLRSQFLE  125 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-----~~g~~~~~~~~--~~~~l~~~g----~~~~~~~~~~~  125 (300)
                      +.+||+|||||++|++||..++++|.+|+|||+++.++     .+|..+.++..  ..+++.+..    ........+.+
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            56899999999999999999999999999999999875     23444444322  223333322    01111112222


Q ss_pred             ccceEEEcCCCceEEEecCCCCCCCcceee-ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEE
Q 022277          126 IKGMAVKSEDGRELRSFGFKDEDASQEVRA-VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIY  202 (300)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~  202 (300)
                      .+.+.+....|.....-     ..+..+.. ..-..++++|..++  .|++++++++|.+++.++.+ ..+.+++|+++.
T Consensus        82 ~d~i~~~e~~Gi~~~e~-----~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t~~g~~i~  155 (408)
T COG2081          82 EDFIDWVEGLGIALKEE-----DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDTSSGETVK  155 (408)
T ss_pred             HHHHHHHHhcCCeeEEc-----cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEcCCCCEEE
Confidence            22222222222211111     11111111 33456777777777  59999999999999998755 569999998899


Q ss_pred             cCEEEEcCCCChH
Q 022277          203 ANIVIGCDGIRSP  215 (300)
Q Consensus       203 ad~vV~A~G~~s~  215 (300)
                      ||.+|+|+|..|.
T Consensus       156 ~d~lilAtGG~S~  168 (408)
T COG2081         156 CDSLILATGGKSW  168 (408)
T ss_pred             ccEEEEecCCcCC
Confidence            9999999997664

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.68  E-value=4.3e-16  Score=121.25  Aligned_cols=135  Identities=19%  Similarity=0.283  Sum_probs=102.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc-------eeeEchhHHHHHHHcCCcHHHHhccccccce
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-------SLTLFKNGWSVLDALGVGSDLRSQFLEIKGM  129 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  129 (300)
                      ...||+||||||+||+||+.|+++|++|+|+||+-.++.+-.       .+.+...+.++|+++|+.-            
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~y------------   96 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRY------------   96 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcc------------
Confidence            468999999999999999999999999999999998853211       1334555677777777631            


Q ss_pred             EEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC-ceEEEEEc----------
Q 022277          130 AVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILELV----------  196 (300)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~-~~~~v~~~----------  196 (300)
                                       ......++..+..++...|..++  .|.+|+.++.|.++...++ ++.+|.++          
T Consensus        97 -----------------e~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh  159 (262)
T COG1635          97 -----------------EEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH  159 (262)
T ss_pred             -----------------eecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc
Confidence                             12234466677778877777666  4899999999999988777 66666654          


Q ss_pred             -CCcEEEcCEEEEcCCCChHhhhhc
Q 022277          197 -NGTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       197 -~g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                       |--.+++++||.|||+-..+-+.+
T Consensus       160 vDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         160 VDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             cCcceeeEEEEEeCCCCchHHHHHH
Confidence             223699999999999988776655

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.68  E-value=9.6e-16  Score=146.19  Aligned_cols=141  Identities=23%  Similarity=0.311  Sum_probs=103.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcC--CcHHHHhccccccceEEEcCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALG--VGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      +|+|||||++||++|+.|++.  |++|+|+||++.....|.++.+.++..+.|+.++  +...+...........+.. .
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~   80 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF-K   80 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE-C
Confidence            799999999999999999998  8999999999987777888999999988888766  2223322222222333332 2


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                      +....       ..+..+..+.|..|.+.|.+.+  .|++++++++|+++...             ..++|+||+|||.+
T Consensus        81 g~~~~-------~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~-------------~~~~D~VVgADG~~  140 (765)
T PRK08255         81 GRRIR-------SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL-------------AADADLVIASDGLN  140 (765)
T ss_pred             CEEEE-------ECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh-------------hcCCCEEEEcCCCC
Confidence            22211       1133345688999999999877  48999999988765321             15789999999999


Q ss_pred             hHhhhhcC
Q 022277          214 SPIAKWIG  221 (300)
Q Consensus       214 s~~r~~~g  221 (300)
                      |.+|+.+.
T Consensus       141 S~vR~~~~  148 (765)
T PRK08255        141 SRIRTRYA  148 (765)
T ss_pred             HHHHHHHH
Confidence            99999873

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.66  E-value=2.9e-15  Score=126.73  Aligned_cols=233  Identities=17%  Similarity=0.193  Sum_probs=158.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCc--C-------CCCceeeEchhHHHHHHHcCCcHHHHh-c
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSL--R-------TGGTSLTLFKNGWSVLDALGVGSDLRS-Q  122 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~--~-------~~g~~~~~~~~~~~~l~~~g~~~~~~~-~  122 (300)
                      ..+||+|||||++|+++|..|...    -.+|.++|....+  .       -..+...+.+.+...++.+|.|+.+.. .
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R  114 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR  114 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence            479999999999999999999864    4689999998432  1       134456778899999999999988765 3


Q ss_pred             cccccceEEEcCCCceEEEecCCCCCCC-cceeeecHHHHHHHHHh-----cCCCCeEEeCCeEEEEEEc-------CCc
Q 022277          123 FLEIKGMAVKSEDGRELRSFGFKDEDAS-QEVRAVERRILLETLAN-----QLPPESVQFSSELAKIETS-------GNG  189 (300)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~l~~-----~~~g~~i~~~~~v~~i~~~-------~~~  189 (300)
                      ..+...+..++.....  .+.+..+... +....+....+...|..     ..++++|...+++..++.-       +..
T Consensus       115 ~~~~~~~~v~Ds~s~a--~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~  192 (481)
T KOG3855|consen  115 YQKFSRMLVWDSCSAA--LILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM  192 (481)
T ss_pred             cccccceeeecccchh--hhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence            4444555554432221  1222222222 22344555555555552     2257899999998887652       223


Q ss_pred             eEEEEEcCCcEEEcCEEEEcCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCC-CCceEEEEeCCeEEEEEEcCCC
Q 022277          190 VTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPF-EPKLNYIYGRGVRAGYVPVSPT  267 (300)
Q Consensus       190 ~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~  267 (300)
                      ...+.+.+|..+..|++|+|+|.+|.+|+..++..+.+. .+++..+....+.+... ...++.|...|+.+ +.|++++
T Consensus       193 ~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiA-llpl~d~  271 (481)
T KOG3855|consen  193 WFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIA-LLPLSDT  271 (481)
T ss_pred             eEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCcee-ecccccc
Confidence            456888899999999999999999999999998877663 45566655555553333 35667777666666 8999987


Q ss_pred             eEEEEEEEcCCCCCchhhhhhhhhhh
Q 022277          268 KVYWFICHNNPTPGYLALVMLKHIWM  293 (300)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (300)
                       ...++|...++....+..+.++-+.
T Consensus       272 -~s~LvWSts~~~a~~L~~lp~e~fv  296 (481)
T KOG3855|consen  272 -LSSLVWSTSPENASILKSLPEERFV  296 (481)
T ss_pred             -cccceeecCHHHHHHHhcCCchhHH
Confidence             4557777776655555444443333

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.65  E-value=1.1e-15  Score=134.78  Aligned_cols=141  Identities=28%  Similarity=0.393  Sum_probs=77.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEch-----------------hHHHHHHHcCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFK-----------------NGWSVLDALGVG  116 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~~-----------------~~~~~l~~~g~~  116 (300)
                      |||+|||||++||.||+.|++.|.+|+|+||++.++.     ++.-+.++.                 .....++.++..
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            6999999999999999999999999999999988642     222222221                 012233333221


Q ss_pred             HHHHhccccccceEEEc-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEE
Q 022277          117 SDLRSQFLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTIL  193 (300)
Q Consensus       117 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v  193 (300)
                      + +.. .+...++.+.. .+++...             ..-....+.+.|.+.+  .|++|+++++|++++.++++++.|
T Consensus        81 d-~~~-ff~~~Gv~~~~~~~gr~fP-------------~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v  145 (409)
T PF03486_consen   81 D-LIA-FFEELGVPTKIEEDGRVFP-------------KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGV  145 (409)
T ss_dssp             H-HHH-HHHHTT--EEE-STTEEEE-------------TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEE
T ss_pred             H-HHH-HHHhcCCeEEEcCCCEECC-------------CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEe
Confidence            1 111 11112222222 1222110             1113346666666655  389999999999999988887889


Q ss_pred             EEcCCcEEEcCEEEEcCCCCh
Q 022277          194 ELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       194 ~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      .++++..+.||.||+|+|..|
T Consensus       146 ~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  146 KTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             EETTTEEEEESEEEE----SS
T ss_pred             eccCcccccCCEEEEecCCCC
Confidence            997777899999999999876

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.64  E-value=4.3e-14  Score=124.12  Aligned_cols=190  Identities=22%  Similarity=0.259  Sum_probs=111.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           60 DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ||+|||||++|+++|+.|++.  |++|+|+|+.+.... ...+.++.......... ..+.+  .........++.... 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~-~~tw~~~~~~~~~~~~~-~~~~~--v~~~W~~~~v~~~~~-   75 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG-NHTWSFFDSDLSDAQHA-WLADL--VQTDWPGYEVRFPKY-   75 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC-cccceecccccchhhhh-hhhhh--heEeCCCCEEECcch-
Confidence            899999999999999999987  999999999875432 22222221111000000 00011  111112222222111 


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA  217 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r  217 (300)
                              ....+..+..+.+..|.+.+.+.+.. .++++++|+++  ++++   |.+.+|++++|++||+|+|.+|...
T Consensus        76 --------~~~l~~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v--~~~~---v~l~dg~~~~A~~VI~A~G~~s~~~  141 (370)
T TIGR01789        76 --------RRKLKTAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGL--DADG---VDLAPGTRINARSVIDCRGFKPSAH  141 (370)
T ss_pred             --------hhhcCCCceEEEHHHHHHHHHHhhcc-cEEecCEEEEE--eCCE---EEECCCCEEEeeEEEECCCCCCCcc
Confidence                    11123456789999999999887733 38889999988  3444   4447888999999999999886421


Q ss_pred             hhcCCCCCccccceEEEEE-eeCCCCCCCCCc--eEEEE----eCC-eEEEEEEcCCCeEEEEEEEcCC
Q 022277          218 KWIGFSEPKYVGHCAYRGL-GYYPNGQPFEPK--LNYIY----GRG-VRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       218 ~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~----~~~-~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                              .+.++..+.|+ ....  .|++..  ..|.+    ..+ .+.+++|++++++.+--+...+
T Consensus       142 --------~~~~~Q~f~G~~~r~~--~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~  200 (370)
T TIGR01789       142 --------LKGGFQVFLGREMRLQ--EPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD  200 (370)
T ss_pred             --------ccceeeEEEEEEEEEc--CCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC
Confidence                    11334444433 3332  224322  22222    233 3455689999999885544444

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.59  E-value=1.4e-13  Score=120.70  Aligned_cols=116  Identities=21%  Similarity=0.242  Sum_probs=73.5

Q ss_pred             eeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh-hhhcCCCCCcccc
Q 022277          153 VRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIGFSEPKYVG  229 (300)
Q Consensus       153 ~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~-r~~~g~~~~~~~~  229 (300)
                      ...++...+.+.|.+.+  .|++++.+++|+++..+++++.+|.+.+|+ +.||.||+|+|.++.. .+.++...+....
T Consensus       141 ~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~~~~~~  219 (358)
T PF01266_consen  141 GGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDLPLRPV  219 (358)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSSTEEEE
T ss_pred             cccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccccccccccc
Confidence            34578888888888776  589999999999999998886679999997 9999999999999854 5555654433322


Q ss_pred             ceEEEEEeeCCCCCCCCCce---EEEEeCCeEEEEEEcCCCeEEEE
Q 022277          230 HCAYRGLGYYPNGQPFEPKL---NYIYGRGVRAGYVPVSPTKVYWF  272 (300)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~  272 (300)
                      ..... ..+..... .....   .....+....+++|.. +.+.+.
T Consensus       220 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~-g~~~ig  262 (358)
T PF01266_consen  220 RGQVL-VLEPPESP-LAPAILFPPVIFGPSDGVYIRPRP-GGVLIG  262 (358)
T ss_dssp             EEEEE-EEEGCCSG-SSSEEEEEEECESSCTEEEEEEET-TEEEEE
T ss_pred             ceEEE-EEccCCcc-cccccccccccccccccceecccc-cccccc
Confidence            22121 22222121 11111   1112234566678888 666544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.59  E-value=2.5e-13  Score=120.32  Aligned_cols=71  Identities=17%  Similarity=0.165  Sum_probs=55.4

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC-hHhhhhcCCCCCc
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR-SPIAKWIGFSEPK  226 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~-s~~r~~~g~~~~~  226 (300)
                      ..++...+.+.|.+.+  .|++++.+++|++++.+++. +.|.+.++ ++.+|.||+|+|.+ +.+++.+|...|.
T Consensus       140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~~  213 (380)
T TIGR01377       140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELL-VTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIPL  213 (380)
T ss_pred             cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCCc
Confidence            3567778888877655  48999999999999887665 44777766 69999999999987 4677777766554

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.57  E-value=4.1e-13  Score=118.80  Aligned_cols=59  Identities=14%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .++...+...+.+.+  .|++++++++|++++.++++ +.|.+++| .+.+|.||+|+|.++.
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEeCCC-EEEeeEEEEecCcchh
Confidence            466677777665554  48999999999999987665 55888877 6999999999999864

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.54  E-value=9.4e-14  Score=124.98  Aligned_cols=153  Identities=20%  Similarity=0.254  Sum_probs=84.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHh-ccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~  135 (300)
                      ...+|+|||||++||++|..|.+.|++|+|+|+++.++  | .+...+....  +.+++...... ....+.......+.
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G-~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p~   83 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--G-LWVYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLPR   83 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--c-eeecCCCcCC--CccccCCCCcccchhhhhhhhccCCH
Confidence            46899999999999999999999999999999998773  2 2332221100  00011000000 00000000000000


Q ss_pred             C-ceEEEecCCCCC---CCcceeeecHHHHHHHHHhcC--CCCe--EEeCCeEEEEEEcCCceEEEEEcCC--c--EEEc
Q 022277          136 G-RELRSFGFKDED---ASQEVRAVERRILLETLANQL--PPES--VQFSSELAKIETSGNGVTILELVNG--T--RIYA  203 (300)
Q Consensus       136 ~-~~~~~~~~~~~~---~~~~~~~i~~~~l~~~l~~~~--~g~~--i~~~~~v~~i~~~~~~~~~v~~~~g--~--~~~a  203 (300)
                      . .....+++....   ...........++.+.|.+.+  .++.  |+++++|++++..+++ |.|++.++  .  +..+
T Consensus        84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-w~V~~~~~~~~~~~~~~  162 (461)
T PLN02172         84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-WRVQSKNSGGFSKDEIF  162 (461)
T ss_pred             hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-EEEEEEcCCCceEEEEc
Confidence            0 000111111100   000111234567777776665  2555  8999999999887654 77877643  2  4579


Q ss_pred             CEEEEcCCCChH
Q 022277          204 NIVIGCDGIRSP  215 (300)
Q Consensus       204 d~vV~A~G~~s~  215 (300)
                      |.||+|+|..+.
T Consensus       163 d~VIvAtG~~~~  174 (461)
T PLN02172        163 DAVVVCNGHYTE  174 (461)
T ss_pred             CEEEEeccCCCC
Confidence            999999998653

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.53  E-value=1.6e-13  Score=120.13  Aligned_cols=167  Identities=24%  Similarity=0.360  Sum_probs=104.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCC---CC------ceeeEchhH-------------HHHHHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRT---GG------TSLTLFKNG-------------WSVLDA  112 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~---~g------~~~~~~~~~-------------~~~l~~  112 (300)
                      ..+||+|||||+.|+++|++|++.+  ++|+|+||.+.+..   ..      .++...+.+             .++.++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999998  99999999987642   11      122222221             111222


Q ss_pred             cCCcHH-------------------HHhccccccceE-EEcCCCceEEEecCC-C-----CCCCcceeeecHHHHHHHHH
Q 022277          113 LGVGSD-------------------LRSQFLEIKGMA-VKSEDGRELRSFGFK-D-----EDASQEVRAVERRILLETLA  166 (300)
Q Consensus       113 ~g~~~~-------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-----~~~~~~~~~i~~~~l~~~l~  166 (300)
                      +++...                   +.+... ..++. +...+...+..+... .     ....+....++..++...|.
T Consensus        82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~-~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~  160 (429)
T COG0579          82 LGIPFINCGKLSVATGEEEVERLEKLYERGK-ANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA  160 (429)
T ss_pred             hCCcccccCeEEEEEChHHHHHHHHHHHHHh-hCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence            221100                   000000 00000 111111111111000 0     01123345678888888888


Q ss_pred             hcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcE-EEcCEEEEcCCCCh-HhhhhcCCCC
Q 022277          167 NQL--PPESVQFSSELAKIETSGNGVTILELVNGTR-IYANIVIGCDGIRS-PIAKWIGFSE  224 (300)
Q Consensus       167 ~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~-~~ad~vV~A~G~~s-~~r~~~g~~~  224 (300)
                      +.+  .|++++++++|+++++.+++++.+.+.+|+. ++|++||.|.|..| .+.+..|++.
T Consensus       161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~  222 (429)
T COG0579         161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE  222 (429)
T ss_pred             HHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence            777  6999999999999999988656688888876 99999999999988 5667667654

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.53  E-value=7e-14  Score=120.99  Aligned_cols=142  Identities=20%  Similarity=0.283  Sum_probs=88.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEE-ecCCCcCCCCceeeEchhH----HHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVI-EQADSLRTGGTSLTLFKNG----WSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~vi-E~~~~~~~~g~~~~~~~~~----~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ||+|||||.||++||+.+++.|.+|+++ ++.+.+..-.+.-++...+    .+.++.+|-.   .-.......+++...
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~---m~~~aD~~~i~~~~l   77 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL---MGRAADETGIHFRML   77 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S---HHHHHHHHEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH---HHHHHhHhhhhhhcc
Confidence            8999999999999999999999999999 4444443333333332222    2333444411   111111222322221


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      +..       ...........++|..+.+.+.+.+   ++++|. +.+|+++..+++.+.+|.+.+|+.+.+|.||+|||
T Consensus        78 N~s-------kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTG  149 (392)
T PF01134_consen   78 NRS-------KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATG  149 (392)
T ss_dssp             STT-------S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TT
T ss_pred             ccc-------CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecc
Confidence            110       0111223345789998888887766   577875 67999999999999999999999999999999999


Q ss_pred             C
Q 022277          212 I  212 (300)
Q Consensus       212 ~  212 (300)
                      .
T Consensus       150 t  150 (392)
T PF01134_consen  150 T  150 (392)
T ss_dssp             T
T ss_pred             c
Confidence            8

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.53  E-value=8e-13  Score=117.61  Aligned_cols=68  Identities=24%  Similarity=0.478  Sum_probs=54.8

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFS  223 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~  223 (300)
                      ..++...+.+.|.+.+  .|++++++++|++++.++++ +.|.+.+| ++.||.||+|+|.++ .+.+.+|..
T Consensus       144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence            4567888888888766  48999999999999877666 45777777 699999999999998 466666754

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.52  E-value=1e-12  Score=120.20  Aligned_cols=111  Identities=10%  Similarity=-0.016  Sum_probs=65.1

Q ss_pred             ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC---Cc--EEEcCEEEEcCCCChH-hhhhc-CCCC--
Q 022277          156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN---GT--RIYANIVIGCDGIRSP-IAKWI-GFSE--  224 (300)
Q Consensus       156 i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g~--~~~ad~vV~A~G~~s~-~r~~~-g~~~--  224 (300)
                      ++...+...+.+.+  .|++++.+++|+++..+++. +.|.+.+   |+  ++.|+.||+|+|.|+. +.+.+ |...  
T Consensus       152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~  230 (508)
T PRK12266        152 VDDARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPY  230 (508)
T ss_pred             cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCc
Confidence            45666666665444  58999999999999877554 5566654   43  6899999999999984 44433 5432  


Q ss_pred             Cccc--cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022277          225 PKYV--GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF  272 (300)
Q Consensus       225 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  272 (300)
                      +...  |++.   +.+  ..........+...++..++++|..++.....
T Consensus       231 ~i~p~kG~~l---vl~--~~~~~~~~~~~~~~dgr~v~~~P~~~g~~liG  275 (508)
T PRK12266        231 GIRLVKGSHI---VVP--RLFDHDQAYILQNPDGRIVFAIPYEDDFTLIG  275 (508)
T ss_pred             ceeeeeeEEE---EEC--CcCCCCcEEEEeCCCCCEEEEEEeCCCeEEEe
Confidence            2111  2221   111  11111121222223466677888876655443

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.52  E-value=9.1e-13  Score=117.85  Aligned_cols=112  Identities=14%  Similarity=-0.004  Sum_probs=69.0

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc-CCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCCCCccccc
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETS-GNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFSEPKYVGH  230 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~~~~~~~~  230 (300)
                      .++...+...|.+.+  .|++++.+++|++++.. ++.++.|.+++| ++.++.||+|+|.++ .+.+.++...|.....
T Consensus       179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~~~~  257 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIESHP  257 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcCccc
Confidence            355666766665555  48999999999999765 455566888877 699999888888776 5676667665543322


Q ss_pred             eEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEE
Q 022277          231 CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWF  272 (300)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  272 (300)
                      ..+. ..+  ...+...  .++.......++.|.+++++.+.
T Consensus       258 ~~~~-~~~--~~~~~~~--~~~~~~~~~~y~~p~~~g~~~ig  294 (407)
T TIGR01373       258 LQAL-VSE--PLKPIID--TVVMSNAVHFYVSQSDKGELVIG  294 (407)
T ss_pred             ceEE-Eec--CCCCCcC--CeEEeCCCceEEEEcCCceEEEe
Confidence            2221 121  1111111  12233444566788888866444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.52  E-value=2e-12  Score=118.30  Aligned_cols=110  Identities=9%  Similarity=-0.058  Sum_probs=66.5

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC----cEEEcCEEEEcCCCChH-hhhhc-CCCC-C
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG----TRIYANIVIGCDGIRSP-IAKWI-GFSE-P  225 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g----~~~~ad~vV~A~G~~s~-~r~~~-g~~~-~  225 (300)
                      .++...+...+...+  .|++++.+++|+++..+++. +.|.+.++    .++.|+.||+|+|.|+. +.+.+ |... +
T Consensus       151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~  229 (502)
T PRK13369        151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSR  229 (502)
T ss_pred             eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCc
Confidence            356677776666555  58999999999999887654 55766554    25899999999999984 54534 5432 2


Q ss_pred             -cc--ccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEE
Q 022277          226 -KY--VGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVY  270 (300)
Q Consensus       226 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  270 (300)
                       ..  .|++.   +.+  ..........+...++..++++|..++...
T Consensus       230 ~v~p~kG~~l---v~~--~~~~~~~~~~~~~~dgr~~~i~P~~~~~~l  272 (502)
T PRK13369        230 NVRLVKGSHI---VVP--KFWDGAQAYLFQNPDKRVIFANPYEGDFTL  272 (502)
T ss_pred             ceEEeeEEEE---EeC--CccCCCceEEEeCCCCeEEEEEEecCCEEE
Confidence             11  12221   121  111111112222345566778998766554

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.51  E-value=2e-13  Score=124.34  Aligned_cols=146  Identities=17%  Similarity=0.218  Sum_probs=90.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCCCCceeeEch----hHHHHHHHcCC-cHHHHhccccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD-SLRTGGTSLTLFK----NGWSVLDALGV-GSDLRSQFLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~-~~~~~g~~~~~~~----~~~~~l~~~g~-~~~~~~~~~~~~~~~  130 (300)
                      ..+||+|||||+||+++|+.+++.|.+|+++|++. .++.-++.-.+..    ...+.++.+|- ........ .. .+.
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~-gi-q~r   80 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT-GI-QFR   80 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc-cC-cee
Confidence            46999999999999999999999999999999984 3321111111111    11222233331 11111100 00 011


Q ss_pred             EEcC-CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEE
Q 022277          131 VKSE-DGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIV  206 (300)
Q Consensus       131 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~v  206 (300)
                      +.+. .|..          .......+++..+...+.+.+   +++++. ..+|+++..+++.+.+|.+.+|..+.|+.|
T Consensus        81 ~ln~skGpA----------V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~V  149 (618)
T PRK05192         81 MLNTSKGPA----------VRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAV  149 (618)
T ss_pred             ecccCCCCc----------eeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEE
Confidence            1111 0110          011123577777877776655   467774 667999988878878899999999999999


Q ss_pred             EEcCCCChH
Q 022277          207 IGCDGIRSP  215 (300)
Q Consensus       207 V~A~G~~s~  215 (300)
                      |+|+|.++.
T Consensus       150 IlATGTFL~  158 (618)
T PRK05192        150 VLTTGTFLR  158 (618)
T ss_pred             EEeeCcchh
Confidence            999998764

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.50  E-value=1.2e-12  Score=117.40  Aligned_cols=168  Identities=20%  Similarity=0.259  Sum_probs=102.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ....||+|||||++||++|+.|.++|.+ ++|+||+..++..-.          .              ..+.++....+
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~----------~--------------~ry~~l~~~~p   61 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR----------Y--------------NRYPGLRLDSP   61 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch----------h--------------ccCCceEECCc
Confidence            4679999999999999999999999998 999999997732111          0              01111111111


Q ss_pred             CCceEEEecCCCCC---CCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC-ceEEEEEcCCcE--EEcCEEEE
Q 022277          135 DGRELRSFGFKDED---ASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN-GVTILELVNGTR--IYANIVIG  208 (300)
Q Consensus       135 ~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~-~~~~v~~~~g~~--~~ad~vV~  208 (300)
                        .....+++....   ...... -.+..+...+.+......|.+++.|+.+..+++ ..|.|++++|..  +.||.||+
T Consensus        62 --~~~~~~~~~p~~~~~~~~~~~-~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~  138 (443)
T COG2072          62 --KWLLGFPFLPFRWDEAFAPFA-EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVV  138 (443)
T ss_pred             --hheeccCCCccCCcccCCCcc-cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEE
Confidence              111123222221   111111 123444444444433457788888888777654 368899998865  45999999


Q ss_pred             cCCCChHhhhhcCCCCCccccceEEEEEeeCC----CCCCCCCceEEEEeCC
Q 022277          209 CDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYP----NGQPFEPKLNYIYGRG  256 (300)
Q Consensus       209 A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  256 (300)
                      |+|..+..      ..|.+.|...|.+.+-++    ....+......+.|.|
T Consensus       139 ATG~~~~P------~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~G  184 (443)
T COG2072         139 ATGHLSEP------YIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAG  184 (443)
T ss_pred             eecCCCCC------CCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCC
Confidence            99996643      356666666555554443    3344555556666653

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.49  E-value=2.6e-12  Score=115.00  Aligned_cols=69  Identities=22%  Similarity=0.313  Sum_probs=49.0

Q ss_pred             ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC-----cEEEcCEEEEcCCCChH-hhhhcCCCCC
Q 022277          156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG-----TRIYANIVIGCDGIRSP-IAKWIGFSEP  225 (300)
Q Consensus       156 i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~ad~vV~A~G~~s~-~r~~~g~~~~  225 (300)
                      ++...+...|.+.+  .|++++++++|++++.+++.+ .+.+.++     ..++||.||+|+|.++. +.+.++...+
T Consensus       194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~~  270 (410)
T PRK12409        194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDRVN  270 (410)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEE-EEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCCCc
Confidence            45556666666655  489999999999998776653 3544332     36899999999999974 5555565433

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.49  E-value=1.4e-12  Score=118.31  Aligned_cols=70  Identities=20%  Similarity=0.250  Sum_probs=53.8

Q ss_pred             eeecHHHHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277          154 RAVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDGIRS-PIAKWIGFS  223 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~s-~~r~~~g~~  223 (300)
                      ..++...+.+.|.+.+  .| ++++++++|++++.++++.|.|.+.   +|+  ++.|++||+|+|.++ .+++.+|+.
T Consensus       178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence            4678888888887776  24 7999999999999866653545543   353  689999999999987 567777775

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.48  E-value=1.7e-12  Score=122.73  Aligned_cols=60  Identities=22%  Similarity=0.287  Sum_probs=50.6

Q ss_pred             eecHHHHHHHHHhcCC-CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          155 AVERRILLETLANQLP-PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~~-g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+++..+.+.|.+.+. |++++++++|++++.++++ +.|.+++|..+.||.||+|+|.++.
T Consensus       404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDG-WQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCE-EEEEECCCcEEECCEEEECCCCCcc
Confidence            4678899999988774 6899999999999887766 5588888877889999999999984

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.47  E-value=1.9e-13  Score=110.42  Aligned_cols=135  Identities=24%  Similarity=0.320  Sum_probs=71.5

Q ss_pred             EEECCCHHHHHHHHHHHHcCCc-EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceEE
Q 022277           62 VIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELR  140 (300)
Q Consensus        62 vIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (300)
                      +|||||++||++|..|.++|++ |+|+|+++.++  |. +.-...      ...+.    ..........+..     +.
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--g~-w~~~~~------~~~~~----~~~~~~~~~~~~~-----~~   62 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--GV-WRRYYS------YTRLH----SPSFFSSDFGLPD-----FE   62 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--TH-HHCH-T------TTT-B----SSSCCTGGSS--C-----CC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--Ce-eEEeCC------CCccc----cCccccccccCCc-----cc
Confidence            7999999999999999999999 99999998773  21 000000      00000    0000000000000     00


Q ss_pred             EecCCCC-CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          141 SFGFKDE-DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       141 ~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+.+... ............++.+.|...+  .+++++++++|++++.++++ |.|++.+++++.||.||+|+|..+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---SSCS
T ss_pred             ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeeccCC
Confidence            0000000 0000111245555555554444  37789999999999999888 8899999988999999999998654

...

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.46  E-value=2.1e-12  Score=114.44  Aligned_cols=174  Identities=22%  Similarity=0.308  Sum_probs=104.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHH----HHHHHc--CCcHHHHhccccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW----SVLDAL--GVGSDLRSQFLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~----~~l~~~--g~~~~~~~~~~~~~~~~  130 (300)
                      ...+|+|||||++||++|.+|.+.|++|+|+||.+.++   .-+.+.+...    ..++++  .+..+.           
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---GlW~y~~~~~~~~ss~Y~~l~tn~pKe~-----------   70 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG---GLWKYTENVEVVHSSVYKSLRTNLPKEM-----------   70 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc---ceEeecCcccccccchhhhhhccCChhh-----------
Confidence            57899999999999999999999999999999999873   2233322211    111111  111111           


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCC----CCeEEeCCeEEEEEEcCCceEEEEEcCC----cEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLP----PESVQFSSELAKIETSGNGVTILELVNG----TRIY  202 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~----g~~i~~~~~v~~i~~~~~~~~~v~~~~g----~~~~  202 (300)
                            .....++++..   ......++.++.+.|.+.+.    ...|.++++|..+...+++.|.|.+.+.    +..-
T Consensus        71 ------~~~~dfpf~~~---~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~i  141 (448)
T KOG1399|consen   71 ------MGYSDFPFPER---DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEI  141 (448)
T ss_pred             ------hcCCCCCCccc---CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEE
Confidence                  01112233221   22333556677777776663    2468999999999888744588888665    3567


Q ss_pred             cCEEEEcCCCCh-Hh-hhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeC
Q 022277          203 ANIVIGCDGIRS-PI-AKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGR  255 (300)
Q Consensus       203 ad~vV~A~G~~s-~~-r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (300)
                      +|.||+|+|.+. +. ...-|.....+.|....  ..+++....+.+...++.|-
T Consensus       142 fd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iH--S~~Yk~~e~f~~k~VlVIG~  194 (448)
T KOG1399|consen  142 FDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIH--SHDYKSPEKFRDKVVLVVGC  194 (448)
T ss_pred             eeEEEEcccCcCCCCCCcCCCCchhhcCCccee--hhhccCcccccCceEEEECC
Confidence            999999999884 11 11112111233333221  34555555666666666654

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.45  E-value=4.5e-12  Score=113.71  Aligned_cols=70  Identities=19%  Similarity=0.209  Sum_probs=53.1

Q ss_pred             ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-hhhhcCCCCCc
Q 022277          156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPK  226 (300)
Q Consensus       156 i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-~r~~~g~~~~~  226 (300)
                      ++...+...|.+.+  .|++|+++++|++++.++++++.|.++++ ++.||.||+|+|.++. +.+.+|...|.
T Consensus       198 ~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~pi  270 (416)
T PRK00711        198 GDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDIPV  270 (416)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCccc
Confidence            45667777776655  58999999999999887777556777655 6999999999999984 44455655443

>PLN02661 Putative thiazole synthesis

Probab=99.44  E-value=3e-12  Score=109.31  Aligned_cols=131  Identities=27%  Similarity=0.300  Sum_probs=84.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCCCCcee-------eEchhHHHHHHHcCCcHHHHhcccccc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGTSL-------TLFKNGWSVLDALGVGSDLRSQFLEIK  127 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~~~g~~~-------~~~~~~~~~l~~~g~~~~~~~~~~~~~  127 (300)
                      ..++||+|||||++|+.+|+.|++. |++|+|+||...++.+....       .+.....++++++|+..+.        
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~--------  161 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDE--------  161 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCccc--------
Confidence            4568999999999999999999986 89999999988764211110       0111133445555542100        


Q ss_pred             ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEc------C-
Q 022277          128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV------N-  197 (300)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~------~-  197 (300)
                            .++               .....+...+.+.|.+++   ++++++.++.++++..+++.+.+|.+.      + 
T Consensus       162 ------~dg---------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~  220 (357)
T PLN02661        162 ------QEN---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNH  220 (357)
T ss_pred             ------CCC---------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhcc
Confidence                  000               001112234444454433   489999999999999887776666641      1 


Q ss_pred             -C------cEEEcCEEEEcCCCChH
Q 022277          198 -G------TRIYANIVIGCDGIRSP  215 (300)
Q Consensus       198 -g------~~~~ad~vV~A~G~~s~  215 (300)
                       +      ..+.|+.||+|||....
T Consensus       221 ~~~s~~dp~~I~AkaVVlATGh~g~  245 (357)
T PLN02661        221 DTQSCMDPNVMEAKVVVSSCGHDGP  245 (357)
T ss_pred             CCCCccceeEEECCEEEEcCCCCCc
Confidence             1      25899999999997653

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.44  E-value=2.7e-12  Score=118.41  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCCChH-hhhhcCCCCCc
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIRSP-IAKWIGFSEPK  226 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~s~-~r~~~g~~~~~  226 (300)
                      .++...+...+...+  .|++++++++|+++..+++++++|.+.+   +  ..+.|+.||+|+|.|+. +.+..+...+.
T Consensus       145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i  224 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRM  224 (546)
T ss_pred             EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCce
Confidence            577788877776655  5899999999999998877766666532   3  36999999999999984 55555655443

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.43  E-value=6.7e-12  Score=104.03  Aligned_cols=171  Identities=17%  Similarity=0.145  Sum_probs=100.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchh-------------HHHHHHHcCCcHHHHhcc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKN-------------GWSVLDALGVGSDLRSQF  123 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~-------------~~~~l~~~g~~~~~~~~~  123 (300)
                      +..||+|||||+-|+++|++|+|+|.+++++|+.+.+...|.+.+.+.-             ..+.++.+--.+.+....
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~   85 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK   85 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence            5689999999999999999999999999999999987665555433211             112222111101111100


Q ss_pred             ccccceEEEcCCC----------------------------ceEE-EecCCCCC---CCcceeeecHHHHHHHHHhcC--
Q 022277          124 LEIKGMAVKSEDG----------------------------RELR-SFGFKDED---ASQEVRAVERRILLETLANQL--  169 (300)
Q Consensus       124 ~~~~~~~~~~~~~----------------------------~~~~-~~~~~~~~---~~~~~~~i~~~~l~~~l~~~~--  169 (300)
                      .......+...+.                            +... .+++++..   .......+...+-++++...+  
T Consensus        86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~  165 (399)
T KOG2820|consen   86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE  165 (399)
T ss_pred             ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence            0000000000000                            0000 11111111   112233456666666666655  


Q ss_pred             CCCeEEeCCeEEEEEEc--CCceEEEEEcCCcEEEcCEEEEcCCCCh--HhhhhcCCCCCcc
Q 022277          170 PPESVQFSSELAKIETS--GNGVTILELVNGTRIYANIVIGCDGIRS--PIAKWIGFSEPKY  227 (300)
Q Consensus       170 ~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~ad~vV~A~G~~s--~~r~~~g~~~~~~  227 (300)
                      .|+.++.+.+|+.++..  ++..+.|.+.+|..+.|+.+|.+.|+|-  .++..+++..|..
T Consensus       166 ~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~  227 (399)
T KOG2820|consen  166 LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVA  227 (399)
T ss_pred             cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccc
Confidence            38899999999988743  3334669999998899999999999985  3444456555544

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.42  E-value=8.9e-12  Score=112.99  Aligned_cols=70  Identities=17%  Similarity=0.289  Sum_probs=54.3

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE---cCC--cEEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNG--TRIYANIVIGCDGIRS-PIAKWIGFS  223 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g--~~~~ad~vV~A~G~~s-~~r~~~g~~  223 (300)
                      ..++...+.+.|.+.+  .|++|+++++|++++.++++.+.+.+   .+|  .+++||+||+|+|.+| .+++.+|+.
T Consensus       173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~  250 (483)
T TIGR01320       173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP  250 (483)
T ss_pred             EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence            4578889999988777  48999999999999986654344543   234  2689999999999987 577777775

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.42  E-value=1e-11  Score=116.05  Aligned_cols=67  Identities=16%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC--CceEEEEE---cCCc--EEEcCEEEEcCCCChH-hhhhcC
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILEL---VNGT--RIYANIVIGCDGIRSP-IAKWIG  221 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~--~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~-~r~~~g  221 (300)
                      .++...+...|.+.+  .|++++.+++|+++..++  ++++.|.+   .+++  .+.+|.||+|+|+|+. +++.++
T Consensus       228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence            467788888887766  589999999999998763  55555555   2343  5899999999999984 666664

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.42  E-value=6.6e-12  Score=113.66  Aligned_cols=68  Identities=22%  Similarity=0.284  Sum_probs=54.2

Q ss_pred             eeecHHHHHHHHHhcC-C-----C--CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCC
Q 022277          154 RAVERRILLETLANQL-P-----P--ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGF  222 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~-~-----g--~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~  222 (300)
                      ..++...+.+.|.+.+ .     |  ++|+++++|++++.++++.+.|.+++| ++.||.||+|+|.|| .+.+.+|+
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGY  282 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCC
Confidence            3577888888776554 2     4  678999999999988666677888887 699999999999998 46666665

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.41  E-value=1.5e-11  Score=110.14  Aligned_cols=206  Identities=17%  Similarity=0.177  Sum_probs=119.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-CCCCceeeEchhHHHHHHHcCCc---HHHHhcc---------
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGGTSLTLFKNGWSVLDALGVG---SDLRSQF---------  123 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~-~~~g~~~~~~~~~~~~l~~~g~~---~~~~~~~---------  123 (300)
                      ..+||+|||||+.|+-+|..++.+|++|+++|+++.. +..+++..+-+.+++.+++..+.   +.+.+..         
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~   90 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL   90 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence            7899999999999999999999999999999999865 34566667766666666554322   1111110         


Q ss_pred             ccccceEEEc-C--C----------------Cc-----eEEEecCC------CC--------CCCcceeeecHHHHHHHH
Q 022277          124 LEIKGMAVKS-E--D----------------GR-----ELRSFGFK------DE--------DASQEVRAVERRILLETL  165 (300)
Q Consensus       124 ~~~~~~~~~~-~--~----------------~~-----~~~~~~~~------~~--------~~~~~~~~i~~~~l~~~l  165 (300)
                      .....+.+-. +  .                +.     ....+...      +.        ...+.-..++...|.-..
T Consensus        91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~  170 (532)
T COG0578          91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN  170 (532)
T ss_pred             cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence            0000000000 0  0                00     00000000      00        001111234444444443


Q ss_pred             HhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCc-----EEEcCEEEEcCCCChH-hhhhcCCCCCcc------ccce
Q 022277          166 ANQL--PPESVQFSSELAKIETSGNGVTILELVNGT-----RIYANIVIGCDGIRSP-IAKWIGFSEPKY------VGHC  231 (300)
Q Consensus       166 ~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~-----~~~ad~vV~A~G~~s~-~r~~~g~~~~~~------~~~~  231 (300)
                      ...+  .|.+++..++|+++..+++ +++|.+.|..     .+.|+.||.|+|.|+. +++..+...+..      .|.+
T Consensus       171 a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsH  249 (532)
T COG0578         171 ARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSH  249 (532)
T ss_pred             HHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceE
Confidence            3333  6899999999999999888 8888887643     5899999999999984 566664332111      2222


Q ss_pred             EEEEEeeCCCCCCCCCceEEEEe-CCeEEEEEEcCCCe
Q 022277          232 AYRGLGYYPNGQPFEPKLNYIYG-RGVRAGYVPVSPTK  268 (300)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~  268 (300)
                      .+   ++.  ..+....+..... ++....++|..+..
T Consensus       250 lV---v~~--~~~~~~a~~~~~~~d~r~~f~iP~~~~~  282 (532)
T COG0578         250 LV---VDK--KFPINQAVINRCRKDGRIVFAIPYEGKT  282 (532)
T ss_pred             EE---ecc--cCCCCceEEeecCCCCceEEEecCCCCE
Confidence            21   222  2222333333333 56677788888775

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.40  E-value=7.5e-12  Score=112.94  Aligned_cols=70  Identities=23%  Similarity=0.290  Sum_probs=53.4

Q ss_pred             eeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEE---EcCCc--EEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277          154 RAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILE---LVNGT--RIYANIVIGCDGIRS-PIAKWIGFS  223 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~s-~~r~~~g~~  223 (300)
                      ..++...+.+.|.+.+   .|++++++++|++++.++++.|.+.   +.+++  +++||+||+|+|.+| .+.+.+|+.
T Consensus       179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~  257 (497)
T PRK13339        179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP  257 (497)
T ss_pred             eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence            4578888888887665   3799999999999988734335565   34452  689999999999998 567777765

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.40  E-value=2.5e-13  Score=121.76  Aligned_cols=148  Identities=21%  Similarity=0.260  Sum_probs=35.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc---eeeEch-hHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT---SLTLFK-NGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~---~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ||||||||++|++||+.+++.|.+|+|+|+.+.++....   ...+.. .... ...-|+..++................
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~~~~   79 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQEDRY   79 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccccccc
Confidence            899999999999999999999999999999998753211   111111 1111 11112223332222111000000000


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC--C-cEEEcCEEEEcC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN--G-TRIYANIVIGCD  210 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g-~~~~ad~vV~A~  210 (300)
                      +             .......++..+...|.+.+  .|+++++++.|+++..++++++.|.+.+  | .++.|+++|+||
T Consensus        80 ~-------------~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaT  146 (428)
T PF12831_consen   80 G-------------WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDAT  146 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0             00001223333333333333  3899999999999999887777777764  3 579999999999


Q ss_pred             CCChHhhhhcCC
Q 022277          211 GIRSPIAKWIGF  222 (300)
Q Consensus       211 G~~s~~r~~~g~  222 (300)
                      |- ..+....|.
T Consensus       147 G~-g~l~~~aG~  157 (428)
T PF12831_consen  147 GD-GDLAALAGA  157 (428)
T ss_dssp             ------------
T ss_pred             cc-ccccccccc
Confidence            94 445444443

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1.5e-11  Score=104.29  Aligned_cols=114  Identities=25%  Similarity=0.330  Sum_probs=77.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+||||||+||++|..++++|++ ++|+|+.. ++  |. ..             ...                  
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~g--g~-~~-------------~~~------------------   46 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PG--GQ-LT-------------KTT------------------   46 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cC--Cc-cc-------------cce------------------
Confidence            568999999999999999999999999 66666553 21  11 00             000                  


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                        .+..+       +.....+.-.+|.+.+.+.+  .++++.. ..|.+++..++ ...|.+.+++ ++|+.||+|+|..
T Consensus        47 --~veny-------pg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~  114 (305)
T COG0492          47 --DVENY-------PGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAG  114 (305)
T ss_pred             --eecCC-------CCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCc
Confidence              00000       11111244557777777766  5777776 67777776655 5668899987 9999999999987


Q ss_pred             hHhh
Q 022277          214 SPIA  217 (300)
Q Consensus       214 s~~r  217 (300)
                      ....
T Consensus       115 ~~~~  118 (305)
T COG0492         115 ARKL  118 (305)
T ss_pred             ccCC
Confidence            6543

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.38  E-value=3.4e-11  Score=106.94  Aligned_cols=121  Identities=17%  Similarity=0.051  Sum_probs=72.3

Q ss_pred             eecHHHHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh-hhhcC-CCCCcccc
Q 022277          155 AVERRILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI-AKWIG-FSEPKYVG  229 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~-r~~~g-~~~~~~~~  229 (300)
                      .++...+.+.|.+.+  .| ..+..++.++.++.+. ..+.|.+.+|+ +.||.||+|+|.++.. ....+ ...+...-
T Consensus       152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p~  229 (387)
T COG0665         152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAGELAATLGELPLPLRPV  229 (387)
T ss_pred             cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcCCCcCccccc
Confidence            466778888887766  35 4667799999998764 56779999986 9999999999999754 44445 33232221


Q ss_pred             ceEEEEEeeCCCCCCC-CCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          230 HCAYRGLGYYPNGQPF-EPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      ..... ..+....... ..............++.|..++++.+.......
T Consensus       230 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~  278 (387)
T COG0665         230 RGQAL-TTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEG  278 (387)
T ss_pred             cceEE-EecCCCccccccccceEEEecCCceEEEEcCCCcEEEeeccccc
Confidence            21111 1222211111 111023333444455678778877765554443

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.37  E-value=3.7e-11  Score=105.94  Aligned_cols=56  Identities=23%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             eeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          154 RAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      ..++...+...|.+.+   .|++++.+++|++++..     .|.+++|+ +.||.||+|+|.++.
T Consensus       140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-----~v~t~~g~-i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG-----TVRTSRGD-VHADQVFVCPGADFE  198 (365)
T ss_pred             eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-----eEEeCCCc-EEeCEEEECCCCChh
Confidence            3567788888887654   38999999999999642     37777774 789999999999874

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.36  E-value=1.1e-11  Score=106.24  Aligned_cols=111  Identities=26%  Similarity=0.387  Sum_probs=74.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      +||+|||||++|+++|..|++.|++|+|+|+.+ +  +|. +....                                 .
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~--gg~-~~~~~---------------------------------~   43 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-P--GGQ-LTTTT---------------------------------E   43 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-C--Ccc-eeecc---------------------------------c
Confidence            589999999999999999999999999999886 2  221 00000                                 0


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      +..++      + ....+...++.+.+.+.+  .++++++ ++|++++.+++. +.|.+.++..+.+|.||+|+|....
T Consensus        44 ~~~~~------~-~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~~~  113 (300)
T TIGR01292        44 VENYP------G-FPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRP-FKVKTGDGKEYTAKAVIIATGASAR  113 (300)
T ss_pred             ccccC------C-CCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCe-eEEEeCCCCEEEeCEEEECCCCCcc
Confidence            00000      0 000122223444443333  3788888 899999887655 5577888888999999999998653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.35  E-value=1.9e-11  Score=111.24  Aligned_cols=159  Identities=16%  Similarity=0.174  Sum_probs=83.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCc-----eeeEchh-----------HHHHHHH----cC-C
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT-----SLTLFKN-----------GWSVLDA----LG-V  115 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~-----~~~~~~~-----------~~~~l~~----~g-~  115 (300)
                      ..+||||||+|++|+++|+.+++.|.+|+|+||.+....+|.     ++.....           ..+.++.    .+ .
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR   82 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence            568999999999999999999999999999999874211111     1110000           0111111    11 0


Q ss_pred             -cHHHHhcccc--ccceEEEcCCCceEEEecCCCC--CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC
Q 022277          116 -GSDLRSQFLE--IKGMAVKSEDGRELRSFGFKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN  188 (300)
Q Consensus       116 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~  188 (300)
                       ...+......  ...+.+....|..+........  ........-.-..+.+.|.+.+  .|++++++++|+++..+++
T Consensus        83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g  162 (466)
T PRK08274         83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG  162 (466)
T ss_pred             CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence             1111110000  0000000111111100000000  0000000011234555555544  4899999999999988777


Q ss_pred             ceEEEEEc--CC--cEEEcCEEEEcCCCChH
Q 022277          189 GVTILELV--NG--TRIYANIVIGCDGIRSP  215 (300)
Q Consensus       189 ~~~~v~~~--~g--~~~~ad~vV~A~G~~s~  215 (300)
                      ++++|.+.  ++  ..+.++.||+|+|..+.
T Consensus       163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        163 RFVGARAGSAAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             eEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence            76666663  33  36899999999998654

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.35  E-value=8.9e-12  Score=113.02  Aligned_cols=59  Identities=14%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      ..+++.++.+.|.+.+  .|++|+.+++|++++. ++. +.|.+.+| ++.||.||+|+|.++.
T Consensus       178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEEeCCc-EEECCEEEEccccccc
Confidence            4578888988888766  4899999999999975 333 55788777 6999999999999864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.33  E-value=1.3e-11  Score=99.45  Aligned_cols=138  Identities=23%  Similarity=0.215  Sum_probs=82.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--------CCc----eeeEchhHHHHHH------HcCCcHHHH
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--------GGT----SLTLFKNGWSVLD------ALGVGSDLR  120 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--------~g~----~~~~~~~~~~~l~------~~g~~~~~~  120 (300)
                      .+|+|||+|++|++||+.|+..|++|+|+||....+.        ++.    +..+.++...+++      +-|+.+...
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~   81 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT   81 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence            4799999999999999999999999999999986532        111    1223333222222      222211110


Q ss_pred             hccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC-c
Q 022277          121 SQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-T  199 (300)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~  199 (300)
                      .        .++...+..   .+......+ .........|.+.|+..   .+|.++++|+.+...++ .|.+.+++| +
T Consensus        82 ~--------~~~~~~~~~---~~~~~d~~p-yvg~pgmsalak~LAtd---L~V~~~~rVt~v~~~~~-~W~l~~~~g~~  145 (331)
T COG3380          82 P--------AVWTFTGDG---SPPRGDEDP-YVGEPGMSALAKFLATD---LTVVLETRVTEVARTDN-DWTLHTDDGTR  145 (331)
T ss_pred             c--------cccccccCC---CCCCCCCCc-cccCcchHHHHHHHhcc---chhhhhhhhhhheecCC-eeEEEecCCCc
Confidence            0        011111100   001111111 22233445666666554   48999999999998855 488999776 4


Q ss_pred             EEEcCEEEEcCCC
Q 022277          200 RIYANIVIGCDGI  212 (300)
Q Consensus       200 ~~~ad~vV~A~G~  212 (300)
                      ...+|.||+|.=+
T Consensus       146 ~~~~d~vvla~PA  158 (331)
T COG3380         146 HTQFDDVVLAIPA  158 (331)
T ss_pred             ccccceEEEecCC
Confidence            6789999988643

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.32  E-value=2.7e-10  Score=97.15  Aligned_cols=162  Identities=20%  Similarity=0.217  Sum_probs=104.6

Q ss_pred             ccCCCCcEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCCCC-ceeeEchhHHHHHHHcCCcHHHHhc----
Q 022277           54 ADVRKEDIVIVGAGIAGLATAVSLQRL------GIGSLVIEQADSLRTGG-TSLTLFKNGWSVLDALGVGSDLRSQ----  122 (300)
Q Consensus        54 ~~~~~~dVvIIGgG~aGl~~A~~L~~~------G~~V~viE~~~~~~~~g-~~~~~~~~~~~~l~~~g~~~~~~~~----  122 (300)
                      +....+||+||||||+||++|+.|.+.      .++|.|+|+...++..- .+--+.|.++..|     ..+..+.    
T Consensus        72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL-----~P~wke~~apl  146 (621)
T KOG2415|consen   72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL-----LPDWKEDGAPL  146 (621)
T ss_pred             hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh-----CcchhhcCCcc
Confidence            344679999999999999999999753      46899999999874321 1223344444332     0111111    


Q ss_pred             cccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCc-eEEEEEcC--
Q 022277          123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNG-VTILELVN--  197 (300)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~-~~~v~~~~--  197 (300)
                      ..+...-.+....+.....++..........+.++-.++.++|-+++  -|++|..+..+.++..++++ +.+|.++|  
T Consensus       147 ~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G  226 (621)
T KOG2415|consen  147 NTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG  226 (621)
T ss_pred             cccccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc
Confidence            12222222222233333333333233344467888899999998877  48999999999888877654 55676653  


Q ss_pred             -------------CcEEEcCEEEEcCCCChHhhhhc
Q 022277          198 -------------GTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       198 -------------g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                                   |-.+.|+.-|.|.|.+..+.+++
T Consensus       227 I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi  262 (621)
T KOG2415|consen  227 ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI  262 (621)
T ss_pred             ccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence                         23689999999999988776655

>TIGR00275 flavoprotein, HI0933 family

Probab=99.31  E-value=2.9e-11  Score=107.51  Aligned_cols=155  Identities=25%  Similarity=0.307  Sum_probs=86.4

Q ss_pred             EEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEchh--HHHHHHHcCCcHH-HH---hccccccceE
Q 022277           62 VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFKN--GWSVLDALGVGSD-LR---SQFLEIKGMA  130 (300)
Q Consensus        62 vIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~~~--~~~~l~~~g~~~~-~~---~~~~~~~~~~  130 (300)
                      +|||||++|+++|+.|++.|.+|+|+||++.++.     ++..+.+...  ..++++..+-... +.   ........+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            6999999999999999999999999999987642     1111222111  1112222211000 00   0000000011


Q ss_pred             EEcCCCceEEEecCCCCCCCcce-eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEV-RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      +....|..+....     .+..+ .......+.+.|.+.+  .+++++++++|+++..+++. +.|.+ +++.+.+|.||
T Consensus        81 ~~~~~Gv~~~~~~-----~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~-~~~~i~ad~VI  153 (400)
T TIGR00275        81 FFESLGLELKVEE-----DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET-SGGEYEADKVI  153 (400)
T ss_pred             HHHHcCCeeEEec-----CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE-CCcEEEcCEEE
Confidence            1111111111100     00001 0112345555555554  48999999999999876554 55666 45579999999


Q ss_pred             EcCCCCh-----------HhhhhcCCC
Q 022277          208 GCDGIRS-----------PIAKWIGFS  223 (300)
Q Consensus       208 ~A~G~~s-----------~~r~~~g~~  223 (300)
                      +|+|.+|           .+.+.+|..
T Consensus       154 lAtG~~s~p~~gs~G~g~~la~~lG~~  180 (400)
T TIGR00275       154 LATGGLSYPQLGSTGDGYEIAESLGHT  180 (400)
T ss_pred             ECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence            9999876           466677765

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.31  E-value=2.9e-11  Score=110.19  Aligned_cols=143  Identities=18%  Similarity=0.229  Sum_probs=86.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-CCCceeeEc---hh-HHHHHHHcCC-cHHHHhccccccce--E
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLF---KN-GWSVLDALGV-GSDLRSQFLEIKGM--A  130 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-~~g~~~~~~---~~-~~~~l~~~g~-~~~~~~~~~~~~~~--~  130 (300)
                      +||+|||||++|+++|..+++.|.+|+|+|++.... ..++.....   .. ..+.++.+|- ...+.    ....+  .
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~----d~~~i~~r   76 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAA----DKAGLQFR   76 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHH----Hhhceehe
Confidence            699999999999999999999999999999975321 111100110   00 1122222221 11110    00011  1


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEc-CCceEEEEEcCCcEEEcCEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETS-GNGVTILELVNGTRIYANIV  206 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~ad~v  206 (300)
                      +.+...         ..........+++..+.+.+.+.+   +++.++. .+|+++..+ ++.+.+|.+.+|..+.|+.|
T Consensus        77 ~ln~sk---------gpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~V  146 (617)
T TIGR00136        77 VLNSSK---------GPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAV  146 (617)
T ss_pred             ecccCC---------CCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEE
Confidence            111000         000111224678888888886655   4677765 467777665 56677899999989999999


Q ss_pred             EEcCCCChH
Q 022277          207 IGCDGIRSP  215 (300)
Q Consensus       207 V~A~G~~s~  215 (300)
                      |+|+|.+..
T Consensus       147 ILATGtfL~  155 (617)
T TIGR00136       147 IITTGTFLR  155 (617)
T ss_pred             EEccCcccC
Confidence            999999963

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.31  E-value=4.3e-11  Score=107.31  Aligned_cols=88  Identities=16%  Similarity=0.108  Sum_probs=72.3

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc-CCCCCccccc
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFSEPKYVGH  230 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~-g~~~~~~~~~  230 (300)
                      ..+++..+...|+..+  .|+.|..++.|+++....++.++|++..| .+++..||.|+|.|...-..+ |.+.|-+.-+
T Consensus       182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~  260 (856)
T KOG2844|consen  182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPMH  260 (856)
T ss_pred             cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceeee
Confidence            3578888888887766  58999999999999988887788999999 599999999999998765555 8888888877


Q ss_pred             eEEEEEeeCCCC
Q 022277          231 CAYRGLGYYPNG  242 (300)
Q Consensus       231 ~~~~~~~~~~~~  242 (300)
                      ++|..+...+..
T Consensus       261 H~YvvT~~IeGi  272 (856)
T KOG2844|consen  261 HAYVVTSRIEGV  272 (856)
T ss_pred             eeEEEecccCCc
Confidence            777765555443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.30  E-value=3.4e-11  Score=110.27  Aligned_cols=38  Identities=37%  Similarity=0.587  Sum_probs=35.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..+||||||+|.+|+++|+.+++.|.+|+||||.+..+
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G   97 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG   97 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            57899999999999999999999999999999998653

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.29  E-value=6.1e-11  Score=111.10  Aligned_cols=37  Identities=41%  Similarity=0.597  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||.|||++|+.+++.|.+|+|+||...+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            4689999999999999999999999999999986654

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.29  E-value=4.6e-11  Score=107.26  Aligned_cols=155  Identities=26%  Similarity=0.356  Sum_probs=81.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC----CCceeeEch----------h-HH----HHHHHcC-C-cHH
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT----GGTSLTLFK----------N-GW----SVLDALG-V-GSD  118 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~----~g~~~~~~~----------~-~~----~~l~~~g-~-~~~  118 (300)
                      ||||||+|.+||++|+.++++|.+|+|+||.+..+.    .+.......          . ..    +.++... . ..+
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD   80 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence            899999999999999999999999999999987432    111111111          1 11    1112211 1 111


Q ss_pred             HHhcc----------ccccceEEEc-CCCceEEEecCCCCCCC--------c--ceeeecHHHHHHHHHhcC--CCCeEE
Q 022277          119 LRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDAS--------Q--EVRAVERRILLETLANQL--PPESVQ  175 (300)
Q Consensus       119 ~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~--~~~~i~~~~l~~~l~~~~--~g~~i~  175 (300)
                      +....          ....++.+.. ..+. ............        .  ......-..+.+.|.+.+  .+++|+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~  159 (417)
T PF00890_consen   81 LVRAFVENSPEAIDWLEELGVPFRRDEDGP-FAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIR  159 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--B-BGTTSS-BCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEE
T ss_pred             hhhhhhhcccceehhhhhhccccccccccc-ccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeee
Confidence            11110          0011222222 1110 000000000001        0  011123345666666655  479999


Q ss_pred             eCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCCCChH
Q 022277          176 FSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       176 ~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~s~  215 (300)
                      ++++++++..+++++.+|...   +|+  .+.|+.||+|+|..+.
T Consensus       160 ~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  160 FNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             ESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             ccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            999999999988888878776   444  6889999999999885

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.29  E-value=4.2e-11  Score=81.36  Aligned_cols=80  Identities=31%  Similarity=0.511  Sum_probs=62.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceE
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGREL  139 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  139 (300)
                      +|+|||||+.|+.+|..|++.|.+|+|+++.+.+.....                  .                      
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~------------------~----------------------   40 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFD------------------P----------------------   40 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS------------------H----------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcC------------------H----------------------
Confidence            589999999999999999999999999999998731100                  0                      


Q ss_pred             EEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC
Q 022277          140 RSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG  198 (300)
Q Consensus       140 ~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g  198 (300)
                                      -.+..+.+.|.+.  |+++++++.+++++.+++++. |+++||
T Consensus        41 ----------------~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~~~~~-V~~~~g   80 (80)
T PF00070_consen   41 ----------------DAAKILEEYLRKR--GVEVHTNTKVKEIEKDGDGVE-VTLEDG   80 (80)
T ss_dssp             ----------------HHHHHHHHHHHHT--TEEEEESEEEEEEEEETTSEE-EEEETS
T ss_pred             ----------------HHHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCEEE-EEEecC
Confidence                            1122344455444  999999999999999988844 888886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.28  E-value=6.3e-12  Score=114.77  Aligned_cols=139  Identities=19%  Similarity=0.216  Sum_probs=78.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC-CCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-DGR  137 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~  137 (300)
                      .+|+|||||++||++|..|.+.|++++++||++.++...   ....+.     .-|.       ..-+........ .-.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W---~~~~~~-----~~g~-------~~~y~sl~~n~sk~~~   66 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLW---RYTENP-----EDGR-------SSVYDSLHTNTSKEMM   66 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGG---CHSTTC-----CCSE-------GGGSTT-B-SS-GGGS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccC---eeCCcC-----CCCc-------cccccceEEeeCchHh
Confidence            589999999999999999999999999999999884211   100000     0000       000000000000 000


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCC--C--CeEEeCCeEEEEEEcCC----ceEEEEEcCCc---EEEcCEE
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLP--P--ESVQFSSELAKIETSGN----GVTILELVNGT---RIYANIV  206 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~--g--~~i~~~~~v~~i~~~~~----~~~~v~~~~g~---~~~ad~v  206 (300)
                      ....++++..    ......+.++.+.|.+.+.  +  -.|+++++|+++++.++    +.|.|++.++.   +-.+|.|
T Consensus        67 ~fsdfp~p~~----~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V  142 (531)
T PF00743_consen   67 AFSDFPFPED----YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAV  142 (531)
T ss_dssp             CCTTS-HCCC----CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred             cCCCcCCCCC----CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence            0011122111    1123566777777766552  3  36999999999998654    46888886542   4568999


Q ss_pred             EEcCCCChHh
Q 022277          207 IGCDGIRSPI  216 (300)
Q Consensus       207 V~A~G~~s~~  216 (300)
                      |+|+|.++..
T Consensus       143 vvatG~~~~P  152 (531)
T PF00743_consen  143 VVATGHFSKP  152 (531)
T ss_dssp             EEEE-SSSCE
T ss_pred             EEcCCCcCCC
Confidence            9999998743

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.28  E-value=7.6e-11  Score=108.39  Aligned_cols=112  Identities=28%  Similarity=0.389  Sum_probs=78.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ...+||+|||||++|+++|..|++.|++|+|+|+.  +  +|....          ..++.                   
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~--GG~~~~----------~~~~~-------------------  255 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F--GGQVLD----------TMGIE-------------------  255 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--CCeeec----------cCccc-------------------
Confidence            34689999999999999999999999999999864  2  232100          00000                   


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                           .+        .........++.+.+.+.+  .+++++++++|+++...++. +.|.+.+|..+.+|.||+|+|..
T Consensus       256 -----~~--------~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        256 -----NF--------ISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL-IEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             -----cc--------CCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-EEEEECCCCEEEcCEEEECCCCC
Confidence                 00        0001123335555555444  37899999999999887654 55888888889999999999986


Q ss_pred             h
Q 022277          214 S  214 (300)
Q Consensus       214 s  214 (300)
                      .
T Consensus       322 ~  322 (517)
T PRK15317        322 W  322 (517)
T ss_pred             c
Confidence            5

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.24  E-value=1.4e-10  Score=106.48  Aligned_cols=112  Identities=26%  Similarity=0.370  Sum_probs=76.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ...+||+|||||++|+++|..|++.|++|+|+|..  +  +|....          ..++.                   
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~--GG~~~~----------~~~~~-------------------  256 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--I--GGQVKD----------TVGIE-------------------  256 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--CCcccc----------CcCcc-------------------
Confidence            45799999999999999999999999999999753  2  221000          00000                   


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                           .+.      .  .......++.+.+.+.+  .+++++.+++|+++..+++. +.+.+.+|..+.+|.+|+|+|..
T Consensus       257 -----~~~------~--~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       257 -----NLI------S--VPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL-IVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             -----ccc------c--cCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe-EEEEECCCCEEEeCEEEECCCCC
Confidence                 000      0  00012234444444333  38899999999999876654 55778888889999999999986


Q ss_pred             h
Q 022277          214 S  214 (300)
Q Consensus       214 s  214 (300)
                      .
T Consensus       323 ~  323 (515)
T TIGR03140       323 W  323 (515)
T ss_pred             c
Confidence            4

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.23  E-value=2e-10  Score=106.42  Aligned_cols=159  Identities=20%  Similarity=0.168  Sum_probs=84.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc-----hhHHHH-HHH-c--C--C-cHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF-----KNGWSV-LDA-L--G--V-GSD  118 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~-----~~~~~~-l~~-~--g--~-~~~  118 (300)
                      ..+||+|||+|.+||++|+.+++.|.+|+|+||....+.      ++....+.     .++.+. ++. +  +  + ..+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~   83 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD   83 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence            568999999999999999999999999999999864321      11110010     111111 110 0  0  0 001


Q ss_pred             HHhcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC--CCCeEEeCCeEEEE
Q 022277          119 LRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL--PPESVQFSSELAKI  183 (300)
Q Consensus       119 ~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~--~g~~i~~~~~v~~i  183 (300)
                      +....          ....++.+.. .++..... .+.........+..  .-..+.+.|.+.+  .++++++++.++++
T Consensus        84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~L  162 (566)
T PRK06452         84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVR-YFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDL  162 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccccCCCCcEecc-CCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEE
Confidence            00000          0001122211 11111000 00000000000000  1224555555544  48999999999999


Q ss_pred             EEcCCceEEEEEc---CCc--EEEcCEEEEcCCCChHh
Q 022277          184 ETSGNGVTILELV---NGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       184 ~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ..+++.+.+|...   +|+  .+.|+.||+|+|..+.+
T Consensus       163 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l  200 (566)
T PRK06452        163 VTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML  200 (566)
T ss_pred             EEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence            9877777777654   332  57899999999998743

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.22  E-value=1.6e-10  Score=107.78  Aligned_cols=151  Identities=19%  Similarity=0.249  Sum_probs=83.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCc-----eee--Ech-hH-HHHHHHc-----CCcH-HH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGT-----SLT--LFK-NG-WSVLDAL-----GVGS-DL  119 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~-----~~~--~~~-~~-~~~l~~~-----g~~~-~~  119 (300)
                      ..+||+|||||.|||++|+.+++.  |.+|+|+||....+.+..     +..  +.. .. .+.++.+     ++.+ ++
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l   89 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL   89 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence            458999999999999999999998  999999999875432210     111  111 01 1111110     1110 01


Q ss_pred             Hhc----------cccccceEEEc-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEE
Q 022277          120 RSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIET  185 (300)
Q Consensus       120 ~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~  185 (300)
                      ...          .....++.+.. ..+....     .   +..........+.+.|.+.+   .++++++++.|+++..
T Consensus        90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~-----~---g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~  161 (608)
T PRK06854         90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVR-----R---GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV  161 (608)
T ss_pred             HHHHHHhHHHHHHHHHHcCCeeeecCCCCccc-----c---CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE
Confidence            000          00111222221 1111100     0   00000123334555555444   2499999999999987


Q ss_pred             cCCceEEEE---EcCCc--EEEcCEEEEcCCCChH
Q 022277          186 SGNGVTILE---LVNGT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       186 ~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~s~  215 (300)
                      +++.+++|.   ..+++  .+.|+.||+|+|.++.
T Consensus       162 ~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        162 DDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             eCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            666665553   23453  6899999999998774

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.22  E-value=2.7e-10  Score=102.35  Aligned_cols=56  Identities=16%  Similarity=0.112  Sum_probs=41.0

Q ss_pred             HHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEE-EcCCc--EEEcCEEEEcCCCChH
Q 022277          160 ILLETLANQL---PPESVQFSSELAKIETSGNGVTILE-LVNGT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~-~~~g~--~~~ad~vV~A~G~~s~  215 (300)
                      .+.+.|.+.+   .+++|+++++++++..+++.+++|. ..+++  .+.|+.||+|+|..+.
T Consensus       129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence            4555555443   3899999999999987766666544 33444  5899999999998654

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.22  E-value=2.4e-10  Score=103.67  Aligned_cols=157  Identities=13%  Similarity=0.155  Sum_probs=80.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEc-hhHH-----HHHHHc-CC-cHHHHhcccc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLF-KNGW-----SVLDAL-GV-GSDLRSQFLE  125 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~-~~~~-----~~l~~~-g~-~~~~~~~~~~  125 (300)
                      +||+|||||++||++|+.+++.|.+|+|+||....+.     +|....+. .++.     +.++.- ++ ..++......
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            6999999999999999999999999999999864321     11111111 1111     111110 11 0111100000


Q ss_pred             --ccceEEEcCCCceEEEecCC-CCCCCccee--eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC
Q 022277          126 --IKGMAVKSEDGRELRSFGFK-DEDASQEVR--AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG  198 (300)
Q Consensus       126 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g  198 (300)
                        ...+.+....|-.+...... ....+....  ...-..+.+.|.+.+  .+++++.+ .++.+..+++.+.+|.. ++
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g  159 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG  159 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence              00000000001000000000 000000000  011234566665555  47888876 78888776666666666 45


Q ss_pred             cEEEcCEEEEcCCCChHhh
Q 022277          199 TRIYANIVIGCDGIRSPIA  217 (300)
Q Consensus       199 ~~~~ad~vV~A~G~~s~~r  217 (300)
                      ..+.++.||+|+|.++...
T Consensus       160 ~~i~a~~VVLATGG~~~~~  178 (466)
T PRK08401        160 ELLKFDATVIATGGFSGLF  178 (466)
T ss_pred             EEEEeCeEEECCCcCcCCC
Confidence            6799999999999998764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.21  E-value=3.6e-10  Score=105.17  Aligned_cols=157  Identities=26%  Similarity=0.263  Sum_probs=83.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc---h-hHHHHH-HH-----cCCc-HHHHhc
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---K-NGWSVL-DA-----LGVG-SDLRSQ  122 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~---~-~~~~~l-~~-----~g~~-~~~~~~  122 (300)
                      ||+|||||++|+++|+.+++.|.+|+|+||....+.      ++....+.   + ...+.+ ..     -++. .++...
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~   80 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY   80 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence            899999999999999999999999999999875321      11111111   1 111111 10     1111 111000


Q ss_pred             c----------ccccceEEEc-CCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC
Q 022277          123 F----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL--PPESVQFSSELAKIETSG  187 (300)
Q Consensus       123 ~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~  187 (300)
                      .          ....++.+.. .++... ...+.........+..  .-..+...|.+.+  .|+++++++.++++..++
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~-~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~  159 (566)
T TIGR01812        81 MCQEAPKAILELEHWGVPFSRTPDGRIA-QRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD  159 (566)
T ss_pred             HHHHHHHHHHHHHHcCCcceecCCCcEe-eccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC
Confidence            0          0011122211 112110 0011000000000000  1123444444433  389999999999998876


Q ss_pred             CceEEEEE---cCCc--EEEcCEEEEcCCCChHhh
Q 022277          188 NGVTILEL---VNGT--RIYANIVIGCDGIRSPIA  217 (300)
Q Consensus       188 ~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~r  217 (300)
                      +.+.+|..   .+|+  .+.|+.||+|+|..+.+.
T Consensus       160 g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~  194 (566)
T TIGR01812       160 GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY  194 (566)
T ss_pred             CEEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence            66655544   3554  589999999999988653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.21  E-value=2.5e-10  Score=106.21  Aligned_cols=159  Identities=22%  Similarity=0.352  Sum_probs=84.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCC------CCceeeEc----hhHHHH-----HHH-cCCc-H
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT------GGTSLTLF----KNGWSV-----LDA-LGVG-S  117 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~------~g~~~~~~----~~~~~~-----l~~-~g~~-~  117 (300)
                      ..+||+|||||.+||+||+.+++.  |.+|+|+||....+.      +|-.....    .++.+.     ++. .++. .
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~   81 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ   81 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence            468999999999999999999987  489999999865331      11111110    111111     110 0110 1


Q ss_pred             HHHhcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeeec--HHHHHHHHHhcC--CCCeEEeCCeEEE
Q 022277          118 DLRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVE--RRILLETLANQL--PPESVQFSSELAK  182 (300)
Q Consensus       118 ~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~--~~~l~~~l~~~~--~g~~i~~~~~v~~  182 (300)
                      ++....          ....++.+.. .++.... ..+.........+..+  -..+.+.|.+.+  .++++++++.|++
T Consensus        82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~  160 (575)
T PRK05945         82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQ-RAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMR  160 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEee-ccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEE
Confidence            110000          0011222221 1121110 0000000000001111  134556665544  4899999999999


Q ss_pred             EEEcCCceEEEE---EcCCc--EEEcCEEEEcCCCChHh
Q 022277          183 IETSGNGVTILE---LVNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       183 i~~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      +..+++.+.++.   ..+|+  .+.|+.||+|+|.++.+
T Consensus       161 L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        161 LILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             EEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence            987766655554   34554  58999999999998754

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.20  E-value=7.5e-10  Score=103.11  Aligned_cols=159  Identities=21%  Similarity=0.246  Sum_probs=85.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC---CcEEEEecCCCcCC------CCceeeEch---hHHH-----HHHH-cCCc-H
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG---IGSLVIEQADSLRT------GGTSLTLFK---NGWS-----VLDA-LGVG-S  117 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G---~~V~viE~~~~~~~------~g~~~~~~~---~~~~-----~l~~-~g~~-~  117 (300)
                      ..+||+|||||.|||++|+.+++.|   .+|+|+||....+.      +|....+.+   ++.+     .++. -++. .
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~   83 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ   83 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence            5689999999999999999999998   89999999875432      111111221   1111     1111 0110 1


Q ss_pred             HHHhc----------cccccceEEEc-CCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC---CCCeEEeCCeEE
Q 022277          118 DLRSQ----------FLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL---PPESVQFSSELA  181 (300)
Q Consensus       118 ~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~---~g~~i~~~~~v~  181 (300)
                      ++...          .....++.+.. .+|.... ..+.........+..  .-..+.+.|.+.+   .++++++++.++
T Consensus        84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~-~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~  162 (577)
T PRK06069         84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQ-RPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT  162 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEee-eecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence            11000          00111222322 2222111 111100000000000  1123555555433   478999999999


Q ss_pred             EEEEcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          182 KIETSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       182 ~i~~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ++..+++.+.+|..   .+|+  .+.|+.||+|||..+.+
T Consensus       163 ~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (577)
T PRK06069        163 SLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL  202 (577)
T ss_pred             EEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence            99877666555543   3554  58999999999998754

>TIGR00551 nadB L-aspartate oxidase

Probab=99.20  E-value=3e-10  Score=103.77  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=84.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEch-hHH-----HHHHHc-CC-cHHHHhcc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFK-NGW-----SVLDAL-GV-GSDLRSQF  123 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~~-~~~-----~~l~~~-g~-~~~~~~~~  123 (300)
                      .+||+|||||.+||++|+.+++.|. |+|+||.+..+.      ++......+ ++.     ++++.- ++ ..++....
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            4799999999999999999999998 999999965321      111111111 111     111110 11 01110000


Q ss_pred             ----------ccccceEEEc-CCCceEEEecCCCCCCCcceee--ecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcC
Q 022277          124 ----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRA--VERRILLETLANQL---PPESVQFSSELAKIETSG  187 (300)
Q Consensus       124 ----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~  187 (300)
                                ....++.+.. ..+....... .........+.  ..-..+.+.|.+.+   +++++++++.|+++..++
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~-gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~  159 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDRHEQGSYALTRE-GGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET  159 (488)
T ss_pred             HHhHHHHHHHHHHcCCcceeCCCCCccccCC-CCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence                      0001122211 1111000000 00000000000  12245666666554   479999999999998776


Q ss_pred             CceEEEEEcC-C--cEEEcCEEEEcCCCChHhh
Q 022277          188 NGVTILELVN-G--TRIYANIVIGCDGIRSPIA  217 (300)
Q Consensus       188 ~~~~~v~~~~-g--~~~~ad~vV~A~G~~s~~r  217 (300)
                      +.+.+|.+.+ +  ..+.++.||+|+|.++.+.
T Consensus       160 g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~  192 (488)
T TIGR00551       160 GRVVGVWVWNRETVETCHADAVVLATGGAGKLY  192 (488)
T ss_pred             CEEEEEEEEECCcEEEEEcCEEEECCCcccCCC
Confidence            6666565543 3  3689999999999998753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.19  E-value=5.1e-10  Score=103.30  Aligned_cols=37  Identities=38%  Similarity=0.611  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            5689999999999999999999999999999998754

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.17  E-value=8.7e-10  Score=102.01  Aligned_cols=56  Identities=21%  Similarity=0.125  Sum_probs=41.7

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCc-eEEEEE---cCCc--EEEcCEEEEcCCCChH
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNG-VTILEL---VNGT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~-~~~v~~---~~g~--~~~ad~vV~A~G~~s~  215 (300)
                      .+.+.|.+.+  .++++++++.++++..++++ +++|..   .+|+  .+.|+.||+|+|..+.
T Consensus       135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            4555555544  48999999999999877665 666543   3554  5899999999999774

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.17  E-value=9e-10  Score=102.44  Aligned_cols=57  Identities=25%  Similarity=0.198  Sum_probs=42.6

Q ss_pred             HHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEE---EcCCc--EEEcCEEEEcCCCChHh
Q 022277          160 ILLETLANQL---PPESVQFSSELAKIETSGNGVTILE---LVNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       160 ~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~---~~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      .+...|.+.+   ++++++.++.++++..+++.+.+|.   ..+|+  .+.|+.||+|||..+.+
T Consensus       134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  198 (582)
T ss_pred             HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence            4555555544   4789999999999988776655543   34563  68999999999998865

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.17  E-value=4.5e-10  Score=101.45  Aligned_cols=57  Identities=11%  Similarity=0.043  Sum_probs=41.7

Q ss_pred             HHHHHHHHhcC--CCCeEEeCCeEEEEEEcC-CceEEEEEc--CCc--EEEcCEEEEcCCCChH
Q 022277          159 RILLETLANQL--PPESVQFSSELAKIETSG-NGVTILELV--NGT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~-~~~~~v~~~--~g~--~~~ad~vV~A~G~~s~  215 (300)
                      ..+.+.|.+.+  .|++++++++|+++..++ +.+++|.+.  +++  .+.++.||+|+|.++.
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            35666665555  489999999999999864 455555543  343  4789999999999876

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.17  E-value=1.9e-09  Score=89.82  Aligned_cols=38  Identities=34%  Similarity=0.572  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLRT   95 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~~   95 (300)
                      +.||+|||||..|.++|+.|.++    |++|+|+||++....
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq  127 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ  127 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence            57999999999999999999763    799999999986543

>PRK07121 hypothetical protein; Validated

Probab=99.15  E-value=1.2e-09  Score=100.12  Aligned_cols=37  Identities=35%  Similarity=0.546  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||||||+|.+|+++|+.+++.|.+|+|+||.+..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~   55 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA   55 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            4689999999999999999999999999999998864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.15  E-value=1.3e-09  Score=101.94  Aligned_cols=37  Identities=35%  Similarity=0.466  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~   85 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT   85 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            4589999999999999999999999999999998754

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.15  E-value=1.8e-09  Score=101.18  Aligned_cols=37  Identities=30%  Similarity=0.405  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||.|||++|+.+++.|.+|+|+||....
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            4689999999999999999999999999999998653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.15  E-value=4.7e-10  Score=103.94  Aligned_cols=111  Identities=20%  Similarity=0.323  Sum_probs=72.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|..|+++|++|+|+|+.. .  +|.. ....             .+                 
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~--GG~~-~~~~-------------~i-----------------   48 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-F--GGQI-TITS-------------EV-----------------   48 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-C--CceE-Eecc-------------cc-----------------
Confidence            45899999999999999999999999999999864 2  2221 0000             00                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                         .  .      ...........+.+.+.+.+  .+++++ +++|+++..+++. +.|.+.++ .+.++.||+|+|++.
T Consensus        49 ---~--~------~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~-~~V~~~~g-~~~a~~lVlATGa~p  114 (555)
T TIGR03143        49 ---V--N------YPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDI-KTIKTARG-DYKTLAVLIATGASP  114 (555)
T ss_pred             ---c--c------CCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCE-EEEEecCC-EEEEeEEEECCCCcc
Confidence               0  0      00001122334444444333  267774 7789888876543 44777666 589999999999876


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       115 ~  115 (555)
T TIGR03143       115 R  115 (555)
T ss_pred             C
Confidence            4

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.15  E-value=1.7e-09  Score=101.22  Aligned_cols=158  Identities=23%  Similarity=0.245  Sum_probs=85.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc---hhHHHH-HHH-----cCC-cHHHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---KNGWSV-LDA-----LGV-GSDLR  120 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~---~~~~~~-l~~-----~g~-~~~~~  120 (300)
                      ..+||+|||||.|||++|+.+++.|.+|+|+||....+.      +|......   .++.+. +..     -++ ..++.
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv  107 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI  107 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            468999999999999999999999999999999875432      11111111   111111 111     011 01111


Q ss_pred             hcc----------ccccceEEEc-CCCceEEEecCCCCC--------CCcceeeec--HHHHHHHHHhcC--CCCeEEeC
Q 022277          121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDED--------ASQEVRAVE--RRILLETLANQL--PPESVQFS  177 (300)
Q Consensus       121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~i~--~~~l~~~l~~~~--~g~~i~~~  177 (300)
                      ...          ....++.+.. .+|.... ..+....        .....+..+  -..+...|.+.+  .|++++.+
T Consensus       108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~-~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~  186 (617)
T PTZ00139        108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQ-RAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE  186 (617)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEeCCCCcEee-cccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence            000          0011222222 1121110 0000000        000000011  135666665544  48999999


Q ss_pred             CeEEEEEE-cCCceEEEEE---cCCc--EEEcCEEEEcCCCChH
Q 022277          178 SELAKIET-SGNGVTILEL---VNGT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       178 ~~v~~i~~-~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~  215 (300)
                      +.++++.. +++.+.+|..   .+|+  .+.|+.||+|||....
T Consensus       187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  230 (617)
T PTZ00139        187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR  230 (617)
T ss_pred             eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence            99999887 4555666654   3554  5789999999998764

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.15  E-value=7.7e-10  Score=101.39  Aligned_cols=156  Identities=19%  Similarity=0.231  Sum_probs=83.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC------CceeeEc-hhHHH-HHHHc-----CC-cHHHHhc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG------GTSLTLF-KNGWS-VLDAL-----GV-GSDLRSQ  122 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~------g~~~~~~-~~~~~-~l~~~-----g~-~~~~~~~  122 (300)
                      ...||+|||+|.|||++|+.+++ |.+|+|+||.+..+..      +-..... .++.+ .++..     ++ ..++...
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   80 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY   80 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence            36799999999999999999976 9999999998764321      1111111 11111 11110     10 0110000


Q ss_pred             c----------ccccceEEEc-CCCceEEEecCCCCCCCccee----eecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEc
Q 022277          123 F----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVR----AVERRILLETLANQL-PPESVQFSSELAKIETS  186 (300)
Q Consensus       123 ~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~  186 (300)
                      .          ....++.+.. .++......  ..........    ......+.+.|.+.+ .++++++++.++++..+
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~--~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~~Li~~  158 (510)
T PRK08071         81 LVEEGPKEIQELIENGMPFDGDETGPLHLGK--EGAHRKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVIDLIIE  158 (510)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCceeecc--CcCccCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhhheeec
Confidence            0          0001222211 111110000  0000000000    011234666666555 58999999999999876


Q ss_pred             CCceEEEEEcC--Cc--EEEcCEEEEcCCCChH
Q 022277          187 GNGVTILELVN--GT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       187 ~~~~~~v~~~~--g~--~~~ad~vV~A~G~~s~  215 (300)
                      ++.+.+|...+  |+  .+.|+.||+|+|..+.
T Consensus       159 ~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        159 NGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             CCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            66666665543  33  5889999999999875

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.14  E-value=1.6e-09  Score=100.54  Aligned_cols=159  Identities=22%  Similarity=0.243  Sum_probs=85.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCC------CCceeeEc-hhHHH-HHHHc---C--Cc-HHHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT------GGTSLTLF-KNGWS-VLDAL---G--VG-SDLR  120 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~------~g~~~~~~-~~~~~-~l~~~---g--~~-~~~~  120 (300)
                      ..+||+|||||++||++|+.+++.  |.+|+|+||....+.      ++.+.... ..+.+ .++..   +  +. .++.
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv   81 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV   81 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence            357999999999999999999987  689999999875432      11111111 11111 11110   1  10 0000


Q ss_pred             hcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC---CCCeEEeCCeEEEEE
Q 022277          121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL---PPESVQFSSELAKIE  184 (300)
Q Consensus       121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~---~g~~i~~~~~v~~i~  184 (300)
                      ...          ....++.+.. .+|..... .+.........+..  .-..+.+.|.+.+   ++++++.++.++++.
T Consensus        82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li  160 (580)
T TIGR01176        82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVR-RFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLL  160 (580)
T ss_pred             HHHHHHhHHHHHHHHHcCCccEecCCCceeee-ccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEE
Confidence            000          0011222221 12211100 00000000000000  1235666666544   478999999999998


Q ss_pred             EcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          185 TSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       185 ~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      .+++.+.+|..   .+|+  .+.|+.||+|||..+.+
T Consensus       161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            87776665543   3563  68899999999998864

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.14  E-value=7.4e-10  Score=102.59  Aligned_cols=35  Identities=37%  Similarity=0.686  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+||||||+|.+||++|+.+++.|.+|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46899999999999999999999999999999998

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.14  E-value=1.2e-09  Score=101.83  Aligned_cols=56  Identities=18%  Similarity=0.081  Sum_probs=42.3

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcC-CceEEEEE---cCCc--EEEcCEEEEcCCCChH
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSG-NGVTILEL---VNGT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~-~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~  215 (300)
                      .+...|.+.+  .++++++++.++++..++ +.+.+|..   .+|+  .+.|+.||+|+|..+.
T Consensus       150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  213 (598)
T PRK09078        150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR  213 (598)
T ss_pred             HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence            4566665544  489999999999998765 45666654   3554  6889999999999875

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.14  E-value=1.6e-09  Score=100.89  Aligned_cols=36  Identities=39%  Similarity=0.612  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            568999999999999999999999999999999754

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.14  E-value=2.4e-10  Score=104.18  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          158 RRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       158 ~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      -..+.+.|.+.+  .|++|+++++|++|..++++.+++...+|+.+++|.||.+...
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            457777777766  4899999999999999888666688888877999999988876

>PRK08275 putative oxidoreductase; Provisional

Probab=99.13  E-value=6.6e-10  Score=102.97  Aligned_cols=158  Identities=21%  Similarity=0.236  Sum_probs=82.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceee---E----ch--hHH-HHHHHc-----CCc-HH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLT---L----FK--NGW-SVLDAL-----GVG-SD  118 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~---~----~~--~~~-~~l~~~-----g~~-~~  118 (300)
                      ..+||+|||||.|||+||+.+++.  |.+|+|+||.+....+....+   +    .+  .+. ..++.+     ++. .+
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   87 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK   87 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence            458999999999999999999987  789999999986422111110   0    00  111 111100     110 11


Q ss_pred             HHhcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEE
Q 022277          119 LRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET  185 (300)
Q Consensus       119 ~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~  185 (300)
                      +....          ....++.+.. ..+..... ... ...........-..+.+.|.+.+  .|++|++++.++++..
T Consensus        88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~~-~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~  165 (554)
T PRK08275         88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVK-KVH-HMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT  165 (554)
T ss_pred             HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeee-ccc-ccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence            10000          0111222222 11211000 000 00000000001124455555444  4899999999999987


Q ss_pred             c-CCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          186 S-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       186 ~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      + ++.+.+|..   .+|+  .+.|+.||+|+|..+.+
T Consensus       166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence            6 455555543   3554  58899999999997653

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.13  E-value=1.7e-09  Score=100.58  Aligned_cols=58  Identities=17%  Similarity=0.058  Sum_probs=43.2

Q ss_pred             HHHHHHHHhcC--CCCeEEeCCeEEEEEEc-CCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          159 RILLETLANQL--PPESVQFSSELAKIETS-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ..+...|.+.+  .+++++.++.++++..+ ++.+.+|..   .+|+  .+.|+.||+|||..+.+
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            35666666554  48899999999999875 456666654   3554  57899999999998754

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.12  E-value=2.8e-09  Score=96.71  Aligned_cols=54  Identities=31%  Similarity=0.438  Sum_probs=40.4

Q ss_pred             HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      .+.+.|.+.+...+|+++++|++|+.++++ +.|.+.+|+++.||.||+|.-...
T Consensus       222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~vI~a~p~~~  275 (451)
T PRK11883        222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDG-YEIVLSNGGEIEADAVIVAVPHPV  275 (451)
T ss_pred             HHHHHHHHhCcCCeEEeCCEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCCHHH
Confidence            344444444422279999999999988776 558888888899999999987544

>TIGR02730 carot_isom carotene isomerase

Probab=99.11  E-value=1.4e-09  Score=99.73  Aligned_cols=62  Identities=18%  Similarity=0.316  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277          159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                      ..+.+.|.+.+  .|++|+++++|++|..+++++.+|.+.+|+.++||.||.|.|.+..+.+.+
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll  292 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL  292 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence            45666666665  489999999999999887777889999998899999999999988776665

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02568 polyamine oxidase

Probab=99.11  E-value=2.5e-09  Score=98.21  Aligned_cols=54  Identities=26%  Similarity=0.421  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          158 RRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       158 ~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      ...|.+.|.+.+++..|+++++|+.|+..+++ +.|.+.+|+++.||.||+|.-.
T Consensus       241 ~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~-v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        241 YLSVIEALASVLPPGTIQLGRKVTRIEWQDEP-VKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             HHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCe-EEEEEcCCCEEEcCEEEEcCCH
Confidence            34688888888866689999999999998777 4588999988999999998764

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.11  E-value=2.6e-09  Score=99.51  Aligned_cols=58  Identities=12%  Similarity=0.027  Sum_probs=42.8

Q ss_pred             HHHHHHHHhcC--CCCeEEeCCeEEEEEEcC----CceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          159 RILLETLANQL--PPESVQFSSELAKIETSG----NGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~----~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ..+.+.|.+.+  .|++++.++.++++..++    +.+.+|..   .+|+  .+.|+.||+|+|..+.+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence            35666666655  489999999999998665    45666654   3554  57899999999998754

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.10  E-value=7.8e-10  Score=85.25  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             CCeEE-eCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          171 PESVQ-FSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       171 g~~i~-~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      +++|. ...+|+++...+++ +.|.+.+|..+.+|.||+|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDG-YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCc-EEEEECCCCEEEeCEEEECCCC
Confidence            55554 37799999998887 5688999999999999999995

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.10  E-value=2.4e-09  Score=97.42  Aligned_cols=62  Identities=27%  Similarity=0.431  Sum_probs=46.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcCCC-------CceeeE--------chhHHHHHHHcCCcHH
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLRTG-------GTSLTL--------FKNGWSVLDALGVGSD  118 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~~~-------g~~~~~--------~~~~~~~l~~~g~~~~  118 (300)
                      +.||+|||||++||++|+.|+++    |++|+|+|+++.++..       |..+..        .+...++++++|+...
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~   81 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV   81 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence            36999999999999999999999    9999999999987421       111111        2346778888887654


Q ss_pred             H
Q 022277          119 L  119 (300)
Q Consensus       119 ~  119 (300)
                      +
T Consensus        82 ~   82 (462)
T TIGR00562        82 L   82 (462)
T ss_pred             c
Confidence            3

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.10  E-value=2.9e-09  Score=96.89  Aligned_cols=59  Identities=14%  Similarity=0.196  Sum_probs=43.7

Q ss_pred             HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277          160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                      .|.+.|.+.+.+++|+++++|++|+.++++ +.|.+.+|+.+.||.||.|.- .....+.+
T Consensus       227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~-~~v~~~~g~~~~ad~VI~a~p-~~~~~~ll  285 (463)
T PRK12416        227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDR-YEISFANHESIQADYVVLAAP-HDIAETLL  285 (463)
T ss_pred             HHHHHHHHhcccccEEcCCEEEEEEEcCCE-EEEEECCCCEEEeCEEEECCC-HHHHHhhc
Confidence            455566665544579999999999988877 558888888899999999984 33344444

>PLN02815 L-aspartate oxidase

Probab=99.09  E-value=7.1e-10  Score=102.87  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||+|.+||++|+.+++.| +|+|+||....
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~   63 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH   63 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence            5689999999999999999999999 99999998864

>PRK10262 thioredoxin reductase; Provisional

Probab=99.08  E-value=2.5e-09  Score=92.63  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ...+||+||||||+||++|..|+++|++|+++|+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            36789999999999999999999999999999964

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=99.07  E-value=6.5e-10  Score=97.49  Aligned_cols=125  Identities=22%  Similarity=0.246  Sum_probs=78.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC--------CceeeEchhHHHHHHHcCCcHH-HHhccccccc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--------GTSLTLFKNGWSVLDALGVGSD-LRSQFLEIKG  128 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~--------g~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~  128 (300)
                      ..||+|||||++|+++|+.|+++|++|+|+|+.+.....        ...+.....+...+...|++.. +.....    
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----   77 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----   77 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----
Confidence            369999999999999999999999999999987765321        1234444555666777787752 222111    


Q ss_pred             eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCE
Q 022277          129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANI  205 (300)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~  205 (300)
                      ..+.......   +      .......++|..+.+.|.+.+   ++++++ ..+|+++.  +          |      .
T Consensus        78 l~~~aad~~~---v------PA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~--~----------~------~  129 (436)
T PRK05335         78 LIMEAADAHR---V------PAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP--E----------D------I  129 (436)
T ss_pred             hheecccccC---C------CCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc--c----------C------C
Confidence            1111100000   0      011224678887888877766   567776 55777664  1          1      7


Q ss_pred             EEEcCCCCh
Q 022277          206 VIGCDGIRS  214 (300)
Q Consensus       206 vV~A~G~~s  214 (300)
                      ||+|+|..+
T Consensus       130 viiatG~~~  138 (436)
T PRK05335        130 TIIATGPLT  138 (436)
T ss_pred             EEEeCCCCc
Confidence            788888754

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.07  E-value=4e-09  Score=93.41  Aligned_cols=61  Identities=30%  Similarity=0.470  Sum_probs=48.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCC-------CCceeeE-------c-hhHHHHHHHcCCcHHHH
Q 022277           60 DIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRT-------GGTSLTL-------F-KNGWSVLDALGVGSDLR  120 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~-------~g~~~~~-------~-~~~~~~l~~~g~~~~~~  120 (300)
                      .|+|||||++||++|+.|++++  .+|+|+|+.++.+.       .|..+..       . +...+.++++|+.+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            6899999999999999999999  99999999987642       1211111       2 45678888999988776

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.07  E-value=1.9e-09  Score=99.47  Aligned_cols=158  Identities=18%  Similarity=0.187  Sum_probs=81.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc-hhH-HHHHHHc-----CC-cHHHHh
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF-KNG-WSVLDAL-----GV-GSDLRS  121 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~-~~~-~~~l~~~-----g~-~~~~~~  121 (300)
                      ...+||+|||+|.|||+||+.++ .|.+|+|+||.+..+.      ++-..... ..+ ...++.+     ++ ..++..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~   85 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR   85 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            35689999999999999999996 5999999999875432      11111111 111 1111111     10 011000


Q ss_pred             cc----------ccccceEEEcCCCceEEEecCCCCCCCcceeee--cHHHHHHHHHhcC---CCCeEEeCCeEEEEEEc
Q 022277          122 QF----------LEIKGMAVKSEDGRELRSFGFKDEDASQEVRAV--ERRILLETLANQL---PPESVQFSSELAKIETS  186 (300)
Q Consensus       122 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~  186 (300)
                      ..          ....++.+....+.... ............+..  .-..+.+.|.+.+   .+++|++++.++++..+
T Consensus        86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~-~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~  164 (553)
T PRK07395         86 FLVEQAPEAIASLVEMGVAFDRHGQHLAL-TLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLE  164 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCeeecCCCceee-ecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheec
Confidence            00          00112222221111100 000000000000111  1134555665544   38999999999999876


Q ss_pred             C--CceEEEEEc-CCc--EEEcCEEEEcCCCChH
Q 022277          187 G--NGVTILELV-NGT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       187 ~--~~~~~v~~~-~g~--~~~ad~vV~A~G~~s~  215 (300)
                      +  +.+.+|... +|.  .+.|+.||+|+|..+.
T Consensus       165 ~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~  198 (553)
T PRK07395        165 PETGRCQGISLLYQGQITWLRAGAVILATGGGGQ  198 (553)
T ss_pred             CCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence            3  455555543 443  4789999999998653

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.07  E-value=3.4e-09  Score=98.25  Aligned_cols=38  Identities=34%  Similarity=0.667  Sum_probs=35.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+||+|||+|++|+++|+.++++|++|+||||.+..
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            45789999999999999999999999999999998765

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.07  E-value=2.3e-09  Score=98.90  Aligned_cols=36  Identities=28%  Similarity=0.430  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||+|.|||++|+.+++. .+|+|+||....
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            568999999999999999999986 899999998753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.07  E-value=4e-09  Score=93.38  Aligned_cols=109  Identities=24%  Similarity=0.377  Sum_probs=79.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+...-                 +                     
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------~---------------------  181 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL-----------------M---------------------  181 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh-----------------C---------------------
Confidence            34689999999999999999999999999999987642100                 0                     


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh--
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS--  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s--  214 (300)
                                   +.    -....+.+.|.+.  |+++++++++++++.+++. +.+.+.+|+++.+|.||.|+|..+  
T Consensus       182 -------------~~----~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        182 -------------PP----EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             -------------CH----HHHHHHHHHHHhC--CCEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCCcch
Confidence                         00    0011333444333  8999999999999876554 558888998999999999999865  


Q ss_pred             HhhhhcCCC
Q 022277          215 PIAKWIGFS  223 (300)
Q Consensus       215 ~~r~~~g~~  223 (300)
                      .+.+..|+.
T Consensus       242 ~l~~~~gl~  250 (377)
T PRK04965        242 ALARRAGLA  250 (377)
T ss_pred             HHHHHCCCC
Confidence            354555543

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.06  E-value=2.2e-09  Score=98.71  Aligned_cols=62  Identities=21%  Similarity=0.384  Sum_probs=50.1

Q ss_pred             HHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277          159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                      ..+.+.|.+.+  .|++|+++++|++|..++++++.|.+.+|+.+.||.||.|.+......+.+
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence            45666666655  389999999999999887777789999998899999999999766555444

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.06  E-value=2.4e-09  Score=96.52  Aligned_cols=59  Identities=10%  Similarity=0.036  Sum_probs=42.7

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEc--CCceEEEEEcC-CcEEEcCEEEEcCCCChHhhh
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETS--GNGVTILELVN-GTRIYANIVIGCDGIRSPIAK  218 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~--~~~~~~v~~~~-g~~~~ad~vV~A~G~~s~~r~  218 (300)
                      .+.+.|.+.+  .|++|+++++|+++..+  ++.+++|...+ +..+.++.||+|+|..+..++
T Consensus       124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~  187 (432)
T TIGR02485       124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRD  187 (432)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHH
Confidence            4566665554  48999999999999876  34455555543 347999999999998765433

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.06  E-value=2.3e-09  Score=100.82  Aligned_cols=37  Identities=27%  Similarity=0.538  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||.+||.+|+.+++.|.+|+|+||.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            5689999999999999999999999999999998754

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.06  E-value=1.9e-09  Score=98.96  Aligned_cols=57  Identities=16%  Similarity=0.154  Sum_probs=42.0

Q ss_pred             HHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcC-Cc--EEEcCEEEEcCCCChH
Q 022277          159 RILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN-GT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       159 ~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~-g~--~~~ad~vV~A~G~~s~  215 (300)
                      ..+.+.|.+.+   .+++++.++.++++..+++.+++|...+ +.  .+.|+.||+|+|..+.
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence            35666665544   3799999999999887666666666543 32  5899999999999764

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.06  E-value=3.7e-09  Score=92.28  Aligned_cols=70  Identities=20%  Similarity=0.290  Sum_probs=55.9

Q ss_pred             eeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277          154 RAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIRS-PIAKWIGFS  223 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~s-~~r~~~g~~  223 (300)
                      ..++...|.+.|.+.+   ++++++++++|++|++.+++.|.|.+.+   |  ..+.|++|++..|..| .+.++.|++
T Consensus       176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~  254 (488)
T PF06039_consen  176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP  254 (488)
T ss_pred             ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence            4567778888887766   4899999999999999998878887743   2  4799999988888887 567777764

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.06  E-value=1.5e-09  Score=101.15  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=30.9

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        61 VvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      |+|||+|+|||+||+.+++.|.+|+|+||.+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            699999999999999999999999999998743

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.05  E-value=3e-09  Score=94.77  Aligned_cols=100  Identities=26%  Similarity=0.329  Sum_probs=73.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.....                                      
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~--------------------------------------  184 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNA--------------------------------------  184 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhc--------------------------------------
Confidence            346899999999999999999999999999999876521000                                      


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                   +.    .....+.+.+.+.  |++++++++|++++. ++. +.+.+.+|+++.+|.||.|.|....
T Consensus       185 -------------~~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~-~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        185 -------------PP----PVQRYLLQRHQQA--GVRILLNNAIEHVVD-GEK-VELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             -------------CH----HHHHHHHHHHHHC--CCEEEeCCeeEEEEc-CCE-EEEEECCCCEEECCEEEECCCCChh
Confidence                         00    0011233333333  899999999999976 333 4478888989999999999998654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.05  E-value=2.6e-09  Score=95.19  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=71.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ...+|+|||||++|+++|..|++.|.  +|+|+++.+.....-               ..+...+....           
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r---------------~~l~~~~~~~~-----------   55 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYER---------------PPLSKSMLLED-----------   55 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCC---------------CCCCHHHHCCC-----------
Confidence            34689999999999999999999987  799999887542100               00101110000           


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                         .           ..... +...   +.+.+  .+++++.++.|+.+..++..   |.+.+|+.+.+|.||+|+|...
T Consensus        56 ---~-----------~~~~~-~~~~---~~~~~--~~i~~~~g~~V~~id~~~~~---v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         56 ---S-----------PQLQQ-VLPA---NWWQE--NNVHLHSGVTIKTLGRDTRE---LVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             ---C-----------ccccc-cCCH---HHHHH--CCCEEEcCCEEEEEECCCCE---EEECCCCEEEcCEEEEccCCCC
Confidence               0           00000 0001   11112  28899999999999876543   6778888899999999999876


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       113 ~  113 (396)
T PRK09754        113 R  113 (396)
T ss_pred             C
Confidence            3

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=99.05  E-value=5.6e-09  Score=85.11  Aligned_cols=222  Identities=11%  Similarity=0.112  Sum_probs=114.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC------CcEEEEecCCCcC-CCCceeeEc-----hhHHHHHHH--cCCcHHHHhc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG------IGSLVIEQADSLR-TGGTSLTLF-----KNGWSVLDA--LGVGSDLRSQ  122 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G------~~V~viE~~~~~~-~~g~~~~~~-----~~~~~~l~~--~g~~~~~~~~  122 (300)
                      ...+|+|||||+.|+.+||+|++++      +.|+|+|...-.+ ..|.+.++.     +.-.+-|..  +.+..++.+.
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde   88 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE   88 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence            4589999999999999999999987      7899999887543 122222211     110111111  1122222221


Q ss_pred             cccccc-----eEEEc---C-CCceEE----EecCC---------CCCCCcceeeecHHHHHHHHHhcC---CCCeEEeC
Q 022277          123 FLEIKG-----MAVKS---E-DGRELR----SFGFK---------DEDASQEVRAVERRILLETLANQL---PPESVQFS  177 (300)
Q Consensus       123 ~~~~~~-----~~~~~---~-~~~~~~----~~~~~---------~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~  177 (300)
                      .-....     ...+.   . +.....    .+++.         .........++++..+.+.+++.+   .++++.++
T Consensus        89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G  168 (380)
T KOG2852|consen   89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG  168 (380)
T ss_pred             hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence            111111     11000   0 000000    01110         012334556789999999998877   35888887


Q ss_pred             CeEEEEEEcCCceEEEEEc---C-CcEEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceE-EE
Q 022277          178 SELAKIETSGNGVTILELV---N-GTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLN-YI  252 (300)
Q Consensus       178 ~~v~~i~~~~~~~~~v~~~---~-g~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  252 (300)
                       +|.++..+..++..+..+   + ......+.+|+|.|.|+..-.    +....+|......+...... +..+... ..
T Consensus       169 -kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskll----p~~rIsglrihsI~l~~~e~-~v~~~avf~~  242 (380)
T KOG2852|consen  169 -KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLL----PFTRISGLRIHSITLSPGEK-PVGPSAVFCE  242 (380)
T ss_pred             -eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhc----cccccceeeeeeEEecCCCC-CCCCceEEEE
Confidence             477787555554444443   2 246788999999999985421    12233445444444444332 2222111 11


Q ss_pred             E--eCC---eEEEEEEcCCCeEEEEEEEcCCCCCchh
Q 022277          253 Y--GRG---VRAGYVPVSPTKVYWFICHNNPTPGYLA  284 (300)
Q Consensus       253 ~--~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~  284 (300)
                      +  .++   .---+|++.+++++....++.-+..++.
T Consensus       243 l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPed  279 (380)
T KOG2852|consen  243 LNTMDGLEICKPEEYARKDREVYICGETDKEHLLPED  279 (380)
T ss_pred             EEeCCCccccCcceeecCCceEEEecCCCccccCCcc
Confidence            1  122   1234678888888654444433323443

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.05  E-value=4.5e-09  Score=97.93  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+.||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4579999999999999999999999999999998754

>PLN02268 probable polyamine oxidase

Probab=99.04  E-value=4.8e-09  Score=94.73  Aligned_cols=36  Identities=28%  Similarity=0.577  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .+|+|||||++||++|+.|.+.|++|+|+|++++++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            479999999999999999999999999999999874

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.04  E-value=3.4e-09  Score=97.37  Aligned_cols=37  Identities=27%  Similarity=0.565  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..+||||||+| +|+++|+.+++.|.+|+||||.+..+
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            47899999999 99999999999999999999987643

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.04  E-value=7.7e-09  Score=93.89  Aligned_cols=59  Identities=29%  Similarity=0.429  Sum_probs=45.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce----------------eeEchhHHHHHHHcCCcHH
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS----------------LTLFKNGWSVLDALGVGSD  118 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~----------------~~~~~~~~~~l~~~g~~~~  118 (300)
                      +|+|||||++||++|+.|+++|++|+|+|+.+.++....+                ....++..++++++|+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            5899999999999999999999999999999876421111                1123667888899987543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.03  E-value=4.6e-09  Score=93.79  Aligned_cols=102  Identities=24%  Similarity=0.397  Sum_probs=80.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+.+++|||||+.|++.|..+++.|.+|+|+|+.+.+.+.-.                  +++                
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D------------------~ei----------------  216 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGED------------------PEI----------------  216 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCC------------------HHH----------------
Confidence            3678999999999999999999999999999999998743110                  111                


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEEcCEEEEcCCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIR  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~A~G~~  213 (300)
                                            ...+.+.|.+  .+++++.+++++.++..+++ +.+.+++|+  ++++|.|++|+|+.
T Consensus       217 ----------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         217 ----------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             ----------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCc
Confidence                                  1134444444  38899999999999988777 558888876  68999999999987


Q ss_pred             hHh
Q 022277          214 SPI  216 (300)
Q Consensus       214 s~~  216 (300)
                      ...
T Consensus       272 Pn~  274 (454)
T COG1249         272 PNT  274 (454)
T ss_pred             cCC
Confidence            644

>PRK07233 hypothetical protein; Provisional

Probab=99.03  E-value=2.4e-09  Score=96.64  Aligned_cols=35  Identities=49%  Similarity=0.646  Sum_probs=33.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      +|+|||||++||++|+.|+++|++|+|+|+++.++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G   35 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG   35 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            68999999999999999999999999999999874

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.02  E-value=4.9e-10  Score=90.18  Aligned_cols=114  Identities=25%  Similarity=0.372  Sum_probs=68.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceE
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGREL  139 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  139 (300)
                      ||+|||||++|+++|..|++.|++|+|+|+.+......               ..+..........              
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~---------------~~~~~~~~~~~~~--------------   51 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS---------------GCIPSPLLVEIAP--------------   51 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH---------------SHHHHHHHHHHHH--------------
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc---------------ccccccccccccc--------------
Confidence            79999999999999999999999999998877431100               0000000000000              


Q ss_pred             EEecCCCCCCCcceeeecHH--HHHHHHHhcCCCCeEEeCCeEEEEEEcCCce----EEE---EEcCCcEEEcCEEEEcC
Q 022277          140 RSFGFKDEDASQEVRAVERR--ILLETLANQLPPESVQFSSELAKIETSGNGV----TIL---ELVNGTRIYANIVIGCD  210 (300)
Q Consensus       140 ~~~~~~~~~~~~~~~~i~~~--~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~----~~v---~~~~g~~~~ad~vV~A~  210 (300)
                                 .........  .+.+.+..  .++++++++++.++......+    ..+   ...++..+.+|+||+|+
T Consensus        52 -----------~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAt  118 (201)
T PF07992_consen   52 -----------HRHEFLPARLFKLVDQLKN--RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIAT  118 (201)
T ss_dssp             -----------HHHHHHHHHHGHHHHHHHH--HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEES
T ss_pred             -----------ccccccccccccccccccc--ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecC
Confidence                       000000000  22222322  277898899999998876631    112   23345689999999999


Q ss_pred             CCChH
Q 022277          211 GIRSP  215 (300)
Q Consensus       211 G~~s~  215 (300)
                      |..+.
T Consensus       119 G~~~~  123 (201)
T PF07992_consen  119 GSRPR  123 (201)
T ss_dssp             TEEEE
T ss_pred             ccccc
Confidence            96644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.02  E-value=8.4e-09  Score=96.12  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=35.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~   47 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF   47 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45789999999999999999999999999999998754

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.01  E-value=6.6e-09  Score=94.51  Aligned_cols=38  Identities=32%  Similarity=0.503  Sum_probs=35.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      +..+||+|||||++|+++|+.|+++|.+|+|+|+.+.+
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~   40 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV   40 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence            45799999999999999999999999999999997665

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.00  E-value=1e-07  Score=85.38  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=36.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT   95 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~   95 (300)
                      ..+||+|||+|.+|+.+|..|++.|.+|+++|+++..+.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG   41 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG   41 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence            579999999999999999999999999999999998743

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.00  E-value=8.6e-09  Score=96.00  Aligned_cols=39  Identities=26%  Similarity=0.599  Sum_probs=35.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+||+|||+|++|+++|+.++++|.+|+|+||....+
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g   45 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG   45 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            457899999999999999999999999999999998653

>PLN02612 phytoene desaturase

Probab=99.00  E-value=1.9e-08  Score=93.32  Aligned_cols=64  Identities=28%  Similarity=0.438  Sum_probs=48.6

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce----------------eeEchhHHHHHHHcCCcHH
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS----------------LTLFKNGWSVLDALGVGSD  118 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~----------------~~~~~~~~~~l~~~g~~~~  118 (300)
                      .....+|+|||||++||++|+.|+++|++|+|+|+++.++....+                ....++..++++++|+.+.
T Consensus        90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~  169 (567)
T PLN02612         90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR  169 (567)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence            345689999999999999999999999999999998765321111                1123566788888887543

>PLN02576 protoporphyrinogen oxidase

Probab=99.00  E-value=1.7e-08  Score=92.81  Aligned_cols=38  Identities=39%  Similarity=0.674  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~   94 (300)
                      ..+||+|||||++||++|+.|++. |++|+|+|+.+.++
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            457999999999999999999999 99999999999874

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.00  E-value=3.4e-09  Score=95.79  Aligned_cols=36  Identities=39%  Similarity=0.529  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence            468999999999999999999999999999999763

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.99  E-value=3.8e-09  Score=96.09  Aligned_cols=37  Identities=32%  Similarity=0.588  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .++||+|||||++|+.+|..|++.|.+|+|+|+.+.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~   39 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL   39 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            4699999999999999999999999999999997654

>PRK09897 hypothetical protein; Provisional

Probab=98.99  E-value=6e-09  Score=95.13  Aligned_cols=146  Identities=18%  Similarity=0.158  Sum_probs=75.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEch--hHHHHHHHc---CC---cHHHHhccccccc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFK--NGWSVLDAL---GV---GSDLRSQFLEIKG  128 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~--~~~~~l~~~---g~---~~~~~~~~~~~~~  128 (300)
                      ++|+|||||++|+++|..|.+.+  ++|+|+|++..++   .+..+..  .....+-..   .+   ...+.+..... .
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G---~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~-~   77 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG---VGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQ-E   77 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC---cceeecCCCChHHHHhcccccccCCChHHHHHHhhhh-h
Confidence            58999999999999999998864  5899999987663   2222221  111111110   00   01111110000 0


Q ss_pred             eEEEcCCCceEEEecCCCCCCCcceeeec---HHHHHHHHHhcC--CC--CeEEeCCeEEEEEEcCCceEEEEEcC-CcE
Q 022277          129 MAVKSEDGRELRSFGFKDEDASQEVRAVE---RRILLETLANQL--PP--ESVQFSSELAKIETSGNGVTILELVN-GTR  200 (300)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~l~~~l~~~~--~g--~~i~~~~~v~~i~~~~~~~~~v~~~~-g~~  200 (300)
                      ..+....+.......    ...+....+.   -....+.+.+.+  .|  +.++.+++|++++..+++ +.|.+.+ |..
T Consensus        78 ~~~~~~~g~~~~~l~----~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~V~t~~gg~~  152 (534)
T PRK09897         78 DSHLQRYGVKKETLH----DRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VMLATNQDLPS  152 (534)
T ss_pred             HHHHHhcCCcceeec----CCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EEEEECCCCeE
Confidence            000000000000000    0000000011   012222333333  24  577889999999888776 5577755 467


Q ss_pred             EEcCEEEEcCCCC
Q 022277          201 IYANIVIGCDGIR  213 (300)
Q Consensus       201 ~~ad~vV~A~G~~  213 (300)
                      +.+|.||+|+|..
T Consensus       153 i~aD~VVLAtGh~  165 (534)
T PRK09897        153 ETFDLAVIATGHV  165 (534)
T ss_pred             EEcCEEEECCCCC
Confidence            9999999999974

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.98  E-value=1.3e-08  Score=92.63  Aligned_cols=101  Identities=23%  Similarity=0.348  Sum_probs=76.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+.-                  ..+                  
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~------------------d~~------------------  217 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL------------------DDE------------------  217 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcC------------------CHH------------------
Confidence            35799999999999999999999999999999988652110                  000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                          ....+.+.|.+.  |++++++++|++++.++++ +.+.+.+|+++++|.||+|+|.....
T Consensus       218 --------------------~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        218 --------------------ISDALSYHLRDS--GVTIRHNEEVEKVEGGDDG-VIVHLKSGKKIKADCLLYANGRTGNT  274 (461)
T ss_pred             --------------------HHHHHHHHHHHc--CCEEEECCEEEEEEEeCCe-EEEEECCCCEEEeCEEEEeecCCccc
Confidence                                011333444333  8999999999999876665 44677788889999999999987654

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.97  E-value=1.1e-08  Score=95.12  Aligned_cols=34  Identities=29%  Similarity=0.571  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHH----HcCCcEEEEecCCCc
Q 022277           60 DIVIVGAGIAGLATAVSLQ----RLGIGSLVIEQADSL   93 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~----~~G~~V~viE~~~~~   93 (300)
                      ||+|||||.|||+||+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    679999999998753

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.97  E-value=9.2e-09  Score=93.58  Aligned_cols=35  Identities=26%  Similarity=0.577  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+||+|||||++|+++|..|+++|++|+|+|+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            56999999999999999999999999999999876

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.97  E-value=5.2e-09  Score=94.54  Aligned_cols=36  Identities=25%  Similarity=0.428  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +.+||+|||||++|+++|..|++.|.+|+|+|+.+.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            469999999999999999999999999999999864

>PRK06370 mercuric reductase; Validated

Probab=98.97  E-value=9.1e-09  Score=93.59  Aligned_cols=36  Identities=31%  Similarity=0.476  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +.++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            356999999999999999999999999999999863

>PRK12839 hypothetical protein; Provisional

Probab=98.96  E-value=1.3e-08  Score=94.51  Aligned_cols=38  Identities=37%  Similarity=0.558  Sum_probs=35.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+||+|||+|.+|+++|+.+++.|.+|+|+|+...+
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            35789999999999999999999999999999998765

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.96  E-value=4.9e-09  Score=86.77  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=37.5

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcC--Cc--EEEcCEEEEcCCCChH
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVN--GT--RIYANIVIGCDGIRSP  215 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~--g~--~~~ad~vV~A~G~~s~  215 (300)
                      -++|..+++|++|..+.+.+.+|...|  |+  .+.++.||.|+|..+.
T Consensus       159 ~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  159 LVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            378999999999998888887887754  33  6889999999998764

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.96  E-value=2.3e-08  Score=92.72  Aligned_cols=37  Identities=30%  Similarity=0.618  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .++||+|||+|.+|+++|+.+++.|.+|+|||+.+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4789999999999999999999999999999998754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.95  E-value=7.3e-09  Score=94.19  Aligned_cols=37  Identities=30%  Similarity=0.536  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .++||+||||||+|+++|..++++|.+|+|+|+...+
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~   38 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL   38 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence            3589999999999999999999999999999986544

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=1.4e-09  Score=96.16  Aligned_cols=145  Identities=17%  Similarity=0.286  Sum_probs=87.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--------CCCCceeeEchhHHHHHHHcCCcHHHHhccccccc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--------RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG  128 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--------~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  128 (300)
                      ..+||+|||||-||+++|+..+|.|.++.++--+...        .-+|-+-+.-.+.++   .+|   .+........+
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEID---ALG---G~Mg~~~D~~~   76 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREID---ALG---GLMGKAADKAG   76 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeeh---hcc---chHHHhhhhcC
Confidence            4599999999999999999999999999998876531        112222222111111   111   11111111111


Q ss_pred             eEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCC-ceEEEEEcCCcEEEcC
Q 022277          129 MAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGN-GVTILELVNGTRIYAN  204 (300)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~~ad  204 (300)
                      +.+...+...       .........++++..+.+.+.+.+   ++..++ ...|+++..+++ .+++|.+++|..+.|+
T Consensus        77 IQ~r~LN~sK-------GPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~  148 (621)
T COG0445          77 IQFRMLNSSK-------GPAVRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAK  148 (621)
T ss_pred             CchhhccCCC-------cchhcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecC
Confidence            1111110000       011122334566777777776665   466665 456777777655 5889999999999999


Q ss_pred             EEEEcCCCChH
Q 022277          205 IVIGCDGIRSP  215 (300)
Q Consensus       205 ~vV~A~G~~s~  215 (300)
                      .||+++|..-.
T Consensus       149 aVVlTTGTFL~  159 (621)
T COG0445         149 AVVLTTGTFLR  159 (621)
T ss_pred             EEEEeeccccc
Confidence            99999997643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.95  E-value=1.1e-08  Score=92.64  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      +|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            589999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.95  E-value=1.7e-08  Score=91.97  Aligned_cols=34  Identities=29%  Similarity=0.645  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|..|+++|.+|+|+|+.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            4799999999999999999999999999999985

>PLN02676 polyamine oxidase

Probab=98.94  E-value=6.1e-08  Score=88.39  Aligned_cols=56  Identities=23%  Similarity=0.242  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhcCC--------CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          158 RRILLETLANQLP--------PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       158 ~~~l~~~l~~~~~--------g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      ...+.+.|.+.+.        +.+|+++++|++|+.+++++ .|.+.+|+++.||.||+|.....
T Consensus       223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV-~V~~~~G~~~~a~~VIvtvPl~v  286 (487)
T PLN02676        223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGV-TVKTEDGSVYRAKYVIVSVSLGV  286 (487)
T ss_pred             HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcE-EEEECCCCEEEeCEEEEccChHH
Confidence            5567777777551        25799999999999988874 48999998999999999997544

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=3.5e-09  Score=95.84  Aligned_cols=39  Identities=38%  Similarity=0.716  Sum_probs=36.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ....+|||||||++||+||.+|...|++|+|+|.+++++
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG   51 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence            367899999999999999999999999999999999874

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.93  E-value=3.6e-09  Score=102.85  Aligned_cols=37  Identities=35%  Similarity=0.416  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||||||++|+.|++.|++|+|||+.+.+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~  341 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL  341 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence            4689999999999999999999999999999998866

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.93  E-value=7e-09  Score=103.50  Aligned_cols=38  Identities=24%  Similarity=0.501  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...||||||+|.+|+++|+.+++.|.+|+|+||.+..+
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G  445 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG  445 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            46899999999999999999999999999999988653

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.93  E-value=1.4e-08  Score=91.84  Aligned_cols=101  Identities=20%  Similarity=0.214  Sum_probs=75.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+...-                  ..+                   
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~------------------d~~-------------------  208 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSF------------------DSM-------------------  208 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCccc------------------CHH-------------------
Confidence            4799999999999999999999999999999988652110                  000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC-cEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~s~~  216 (300)
                                         .+..+.+.|.+.  |+++++++.|++++.++++...+.+++| +.+.+|.||.|+|.....
T Consensus       209 -------------------~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       209 -------------------ISETITEEYEKE--GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             -------------------HHHHHHHHHHHc--CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence                               112334444433  8999999999999876444344777777 579999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06116 glutathione reductase; Validated

Probab=98.93  E-value=1.4e-08  Score=92.03  Aligned_cols=101  Identities=21%  Similarity=0.287  Sum_probs=76.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+++++.+.+....                  ..+                   
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~-------------------  209 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGF------------------DPD-------------------  209 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcccc------------------CHH-------------------
Confidence            4789999999999999999999999999999887542100                  000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                         ....+.+.|.+.  |++++++++|++++.++++.+.+.+.+|+++.+|.||+|+|.....
T Consensus       210 -------------------~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~  267 (450)
T PRK06116        210 -------------------IRETLVEEMEKK--GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT  267 (450)
T ss_pred             -------------------HHHHHHHHHHHC--CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence                               011333444333  8999999999999876555344778888889999999999987644

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.93  E-value=1.7e-08  Score=98.52  Aligned_cols=36  Identities=28%  Similarity=0.513  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+||+|||||.+||.+|+.+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            468999999999999999999999999999999875

>PRK14694 putative mercuric reductase; Provisional

Probab=98.93  E-value=1.6e-08  Score=92.13  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=34.1

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....+||+|||||++|+++|..|++.|.+|+|+|+..
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            3467999999999999999999999999999999863

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.93  E-value=6.9e-09  Score=93.96  Aligned_cols=111  Identities=20%  Similarity=0.286  Sum_probs=67.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           60 DIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      +|+|||||++|+++|..|++.|  .+|+|||+.+.......+               +.             .+..  + 
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~---------------~~-------------~~~~--~-   50 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACG---------------LP-------------YFVG--G-   50 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCC---------------Cc-------------eEec--c-
Confidence            7999999999999999999975  589999998864210000               00             0000  0 


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cCCcEEE--cCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGTRIY--ANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~~~~--ad~vV~A~G~~s  214 (300)
                              ........  +.  ...+.+.+  .+++++++++|++++.++.. +.+.. .+++.++  +|++|+|+|...
T Consensus        51 --------~~~~~~~~--~~--~~~~~~~~--~gv~~~~~~~V~~id~~~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         51 --------FFDDPNTM--IA--RTPEEFIK--SGIDVKTEHEVVKVDAKNKT-ITVKNLKTGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             --------ccCCHHHh--hc--CCHHHHHH--CCCeEEecCEEEEEECCCCE-EEEEECCCCCEEEecCCEEEECCCCCC
Confidence                    00000000  00  00122222  28899999999999877665 32332 2355666  999999999875


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       116 ~~  117 (444)
T PRK09564        116 II  117 (444)
T ss_pred             CC
Confidence            43

>PRK06116 glutathione reductase; Validated

Probab=98.92  E-value=1e-08  Score=92.91  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|..|+++|++|+|+|+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4689999999999999999999999999999986

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.92  E-value=3.4e-08  Score=91.48  Aligned_cols=38  Identities=29%  Similarity=0.636  Sum_probs=34.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+||||||+| +|+++|+.+++.|.+|+|+||.+..+
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~G   51 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVG   51 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCc
Confidence            357999999999 89999999999999999999987653

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.92  E-value=7.7e-09  Score=89.94  Aligned_cols=39  Identities=36%  Similarity=0.660  Sum_probs=36.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ....||||||+|.+||++|++|.+.|++|+|+|.++..+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcC
Confidence            467899999999999999999999999999999999873

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.92  E-value=2.2e-08  Score=96.37  Aligned_cols=118  Identities=24%  Similarity=0.372  Sum_probs=83.8

Q ss_pred             cceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHH
Q 022277           33 CFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDA  112 (300)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~  112 (300)
                      .+..++..+...++....      ...+++|||||+.|+.+|..|++.|.+|+|+|+.+.+....               
T Consensus       121 v~~~rt~~d~~~i~~~~~------~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~---------------  179 (785)
T TIGR02374       121 VYVFRTIEDLDAIMAMAQ------RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQ---------------  179 (785)
T ss_pred             EEEeCCHHHHHHHHHHhh------cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhh---------------
Confidence            344556666655554433      34689999999999999999999999999999887541100               


Q ss_pred             cCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEE
Q 022277          113 LGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTI  192 (300)
Q Consensus       113 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~  192 (300)
                        +..                                      .....+.+.|.+.  |+++++++.++++..++ .+..
T Consensus       180 --ld~--------------------------------------~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~~-~~~~  216 (785)
T TIGR02374       180 --LDQ--------------------------------------TAGRLLQRELEQK--GLTFLLEKDTVEIVGAT-KADR  216 (785)
T ss_pred             --cCH--------------------------------------HHHHHHHHHHHHc--CCEEEeCCceEEEEcCC-ceEE
Confidence              000                                      0011233334333  89999999999987543 3456


Q ss_pred             EEEcCCcEEEcCEEEEcCCCCh
Q 022277          193 LELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       193 v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      |.+.+|+.+.+|.||.|+|...
T Consensus       217 v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       217 IRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             EEECCCCEEEcCEEEECCCCCc
Confidence            8889999999999999999764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.92  E-value=2.8e-08  Score=95.84  Aligned_cols=126  Identities=25%  Similarity=0.355  Sum_probs=87.2

Q ss_pred             ceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHc
Q 022277           34 FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDAL  113 (300)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~  113 (300)
                      +..++..+...+.....      ...+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.+..                
T Consensus       127 ~~~rt~~d~~~l~~~~~------~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~----------------  184 (847)
T PRK14989        127 FVYRTIEDLNAIEACAR------RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQ----------------  184 (847)
T ss_pred             EEECCHHHHHHHHHHHh------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhh----------------
Confidence            34456666655544433      34689999999999999999999999999999987541100                


Q ss_pred             CCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcC-CceEE
Q 022277          114 GVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSG-NGVTI  192 (300)
Q Consensus       114 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~-~~~~~  192 (300)
                       +..                                      -....+.+.|.+.  |+++++++.++++..++ +....
T Consensus       185 -ld~--------------------------------------~~~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~~~~~~  223 (847)
T PRK14989        185 -LDQ--------------------------------------MGGEQLRRKIESM--GVRVHTSKNTLEIVQEGVEARKT  223 (847)
T ss_pred             -cCH--------------------------------------HHHHHHHHHHHHC--CCEEEcCCeEEEEEecCCCceEE
Confidence             000                                      0011333444333  99999999999997643 33455


Q ss_pred             EEEcCCcEEEcCEEEEcCCCChH--hhhhcCC
Q 022277          193 LELVNGTRIYANIVIGCDGIRSP--IAKWIGF  222 (300)
Q Consensus       193 v~~~~g~~~~ad~vV~A~G~~s~--~r~~~g~  222 (300)
                      +.+.+|+.+.+|.||.|+|....  +.+..|+
T Consensus       224 v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl  255 (847)
T PRK14989        224 MRFADGSELEVDFIVFSTGIRPQDKLATQCGL  255 (847)
T ss_pred             EEECCCCEEEcCEEEECCCcccCchHHhhcCc
Confidence            78889999999999999998654  3344443

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.91  E-value=1.4e-08  Score=91.83  Aligned_cols=34  Identities=26%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ++||+|||||++|+++|..|+++|.+|+|+|+..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~   35 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK   35 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence            5899999999999999999999999999999853

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.91  E-value=1e-08  Score=90.55  Aligned_cols=35  Identities=23%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            48999999999999999999999999999988764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.91  E-value=1.6e-08  Score=91.99  Aligned_cols=100  Identities=19%  Similarity=0.357  Sum_probs=74.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+++|+.+.+.+..                  ..+                   
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~------------------~~~-------------------  214 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE------------------DKE-------------------  214 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC------------------CHH-------------------
Confidence            4689999999999999999999999999999987652110                  000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G~~s  214 (300)
                                         ....+.+.|.+.  |++++++++|++++.++++ +.+.+.++   +.+.+|.||+|+|...
T Consensus       215 -------------------~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~-v~v~~~~gg~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        215 -------------------ISKLAERALKKR--GIKIKTGAKAKKVEQTDDG-VTVTLEDGGKEETLEADYVLVAVGRRP  272 (462)
T ss_pred             -------------------HHHHHHHHHHHc--CCEEEeCCEEEEEEEeCCE-EEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence                               011233334333  8999999999999877665 34666655   5799999999999876


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       273 ~~  274 (462)
T PRK06416        273 NT  274 (462)
T ss_pred             CC
Confidence            43

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.90  E-value=1.9e-08  Score=91.47  Aligned_cols=101  Identities=21%  Similarity=0.359  Sum_probs=75.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+++|+.+.+.+..                  ..+                   
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~------------------~~~-------------------  212 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGE------------------DAE-------------------  212 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCC------------------CHH-------------------
Confidence            4689999999999999999999999999999987652100                  000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCChH
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRSP  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s~  215 (300)
                                         ....+.+.|.+.  |++++++++|++++.+++++. +.+.+|  .++.+|.||+|+|..+.
T Consensus       213 -------------------~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       213 -------------------VSKVVAKALKKK--GVKILTNTKVTAVEKNDDQVV-YENKGGETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             -------------------HHHHHHHHHHHc--CCEEEeCCEEEEEEEeCCEEE-EEEeCCcEEEEEeCEEEEecCCccc
Confidence                               011233334333  899999999999987766643 666666  47999999999998775


Q ss_pred             hh
Q 022277          216 IA  217 (300)
Q Consensus       216 ~r  217 (300)
                      ..
T Consensus       271 ~~  272 (461)
T TIGR01350       271 TE  272 (461)
T ss_pred             CC
Confidence            43

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.89  E-value=8.1e-08  Score=83.40  Aligned_cols=75  Identities=21%  Similarity=0.266  Sum_probs=54.8

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-----hhhhcCCCCCccccceE
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-----IAKWIGFSEPKYVGHCA  232 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-----~r~~~g~~~~~~~~~~~  232 (300)
                      ++.+-+.+.+  .|++|+++++|.+++..++.+..|.+.+|+.+.+|.||+|.|+.+.     +.+++|+....-.-...
T Consensus       174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~~p~dIG  253 (486)
T COG2509         174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMRAKPFDIG  253 (486)
T ss_pred             HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcccccCCeeEE
Confidence            3444444444  3899999999999999988777899999999999999999998764     45555655332233344


Q ss_pred             EE
Q 022277          233 YR  234 (300)
Q Consensus       233 ~~  234 (300)
                      +|
T Consensus       254 VR  255 (486)
T COG2509         254 VR  255 (486)
T ss_pred             EE
Confidence            44

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.89  E-value=2.2e-08  Score=98.57  Aligned_cols=36  Identities=33%  Similarity=0.594  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+||+||||||+||++|+.|++.|++|+|+|+.+.+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~  198 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA  198 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            579999999999999999999999999999999876

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.89  E-value=1.1e-08  Score=98.73  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            4579999999999999999999999999999998865

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.88  E-value=4.5e-08  Score=91.25  Aligned_cols=37  Identities=27%  Similarity=0.568  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .++||+|||+|++|+++|+.++++|.+|+|+||...+
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~   51 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV   51 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998764

>PRK12831 putative oxidoreductase; Provisional

Probab=98.88  E-value=6.3e-09  Score=94.34  Aligned_cols=38  Identities=24%  Similarity=0.466  Sum_probs=34.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....||+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            35689999999999999999999999999999988765

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.87  E-value=4.5e-08  Score=89.11  Aligned_cols=34  Identities=29%  Similarity=0.627  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      +||+|||||++|+++|..|++.|.+|+|+|+ +.+
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~   35 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL   35 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence            8999999999999999999999999999999 544

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PLN02507 glutathione reductase

Probab=98.87  E-value=3.2e-08  Score=90.57  Aligned_cols=100  Identities=14%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|+++.+.+...                  +..+                   
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~-------------------  245 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------FDDE-------------------  245 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------cCHH-------------------
Confidence            468999999999999999999999999999988754210                  0000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                         .+..+.+.|.+.  |++++++++|++++.++++ ..+.+.+|+++++|.|+.|.|.....
T Consensus       246 -------------------~~~~l~~~l~~~--GI~i~~~~~V~~i~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        246 -------------------MRAVVARNLEGR--GINLHPRTNLTQLTKTEGG-IKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             -------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEeCCe-EEEEECCCcEEEcCEEEEeecCCCCC
Confidence                               011333444333  8999999999999876555 44777788889999999999987654

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.86  E-value=6e-09  Score=68.03  Aligned_cols=32  Identities=47%  Similarity=0.681  Sum_probs=29.7

Q ss_pred             EECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           63 IVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        63 IIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      |||||++||++|+.|++.|++|+|+|+++.++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999999874

...

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.86  E-value=2.2e-08  Score=90.36  Aligned_cols=112  Identities=15%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+|+|||||++|+.+|..|++.  +.+|+|+|+.+...-...++.               . +....             
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp---------------~-~~~~~-------------   52 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALP---------------Y-YIGEV-------------   52 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcc---------------h-hhcCc-------------
Confidence            3899999999999999999987  679999999986521110000               0 00000             


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC-Cc--EEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN-GT--RIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~-g~--~~~ad~vV~A~G~~  213 (300)
                           .     ........+..    +.+.++ .+++++.+++|++|+.++.. +.+...+ ++  .+.+|.||+|+|..
T Consensus        53 -----~-----~~~~~~~~~~~----~~~~~~-~~i~v~~~~~V~~Id~~~~~-v~~~~~~~~~~~~~~yd~lviAtGs~  116 (438)
T PRK13512         53 -----V-----EDRKYALAYTP----EKFYDR-KQITVKTYHEVIAINDERQT-VTVLNRKTNEQFEESYDKLILSPGAS  116 (438)
T ss_pred             -----c-----CCHHHcccCCH----HHHHHh-CCCEEEeCCEEEEEECCCCE-EEEEECCCCcEEeeecCEEEECCCCC
Confidence                 0     00000000111    122222 28899999999999887755 3244322 22  46899999999987


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      ..
T Consensus       117 ~~  118 (438)
T PRK13512        117 AN  118 (438)
T ss_pred             CC
Confidence            64

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.86  E-value=3.6e-08  Score=89.94  Aligned_cols=101  Identities=25%  Similarity=0.329  Sum_probs=73.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+...                  .+                   
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~------------------~~-------------------  222 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTED------------------AE-------------------  222 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCC------------------HH-------------------
Confidence            47999999999999999999999999999999886521100                  00                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEE-cCCceEEEEEcCCc--EEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIET-SGNGVTILELVNGT--RIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g~--~~~ad~vV~A~G~~s  214 (300)
                                         -...+.+.|.+.  |++++++++|++++. .++++..+.+.+|+  .+.+|.||+|+|...
T Consensus       223 -------------------~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p  281 (472)
T PRK05976        223 -------------------LSKEVARLLKKL--GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP  281 (472)
T ss_pred             -------------------HHHHHHHHHHhc--CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence                               011233334333  899999999999975 23444434555663  699999999999876


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       282 ~~  283 (472)
T PRK05976        282 NT  283 (472)
T ss_pred             CC
Confidence            54

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.85  E-value=3.7e-08  Score=89.63  Aligned_cols=100  Identities=21%  Similarity=0.380  Sum_probs=75.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+++|||||.+|+.+|..|++.|.+|+++++.+.+.+...                  .                    
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d------------------~--------------------  218 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGED------------------A--------------------  218 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCC------------------H--------------------
Confidence            46899999999999999999999999999998876521100                  0                    


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                        -....+.+.|.+.  |+++++++++++++.++++ +.+.+.+|+.+++|.||.|+|.....
T Consensus       219 ------------------~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~-~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        219 ------------------DAAEVLEEVFARR--GMTVLKRSRAESVERTGDG-VVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             ------------------HHHHHHHHHHHHC--CcEEEcCCEEEEEEEeCCE-EEEEECCCcEEEecEEEEeecCCcCC
Confidence                              0011333444333  8999999999999876665 34777788889999999999987654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.85  E-value=3.7e-08  Score=89.72  Aligned_cols=102  Identities=16%  Similarity=0.190  Sum_probs=74.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      ...+|+|||||++|+.+|..++..   |.+|+|+|+.+.+.+.-                  ..+               
T Consensus       186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~------------------d~~---------------  232 (486)
T TIGR01423       186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGF------------------DST---------------  232 (486)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccccc------------------CHH---------------
Confidence            357899999999999999877654   99999999988652110                  000               


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                             -...+.+.|.+.  |+++++++.+++++.++++...+.+.+|+.+.+|.||.|+|..
T Consensus       233 -----------------------~~~~l~~~L~~~--GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~  287 (486)
T TIGR01423       233 -----------------------LRKELTKQLRAN--GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV  287 (486)
T ss_pred             -----------------------HHHHHHHHHHHc--CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence                                   012344444433  8999999999999876554344777778889999999999987


Q ss_pred             hHh
Q 022277          214 SPI  216 (300)
Q Consensus       214 s~~  216 (300)
                      ...
T Consensus       288 Pn~  290 (486)
T TIGR01423       288 PRT  290 (486)
T ss_pred             cCc
Confidence            654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.85  E-value=2.7e-08  Score=87.31  Aligned_cols=144  Identities=22%  Similarity=0.293  Sum_probs=86.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC------CCCceeeEch-----------------------------
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR------TGGTSLTLFK-----------------------------  104 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~------~~g~~~~~~~-----------------------------  104 (300)
                      ||+|||+|+|||++|+.|.+. ++|+|+-|.+...      ++|-+..+.+                             
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999998 9999999987541      2444433332                             


Q ss_pred             ---hHHHHHHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCC
Q 022277          105 ---NGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSS  178 (300)
Q Consensus       105 ---~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~  178 (300)
                         ...+.|..+|+..+-...    ..+.+-...+.....+-...   +     ..-..++..|.+++   ++++++.++
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~----g~~~lt~EggHS~rRIlH~~---~-----~TG~~I~~~L~~~v~~~p~I~v~e~~  155 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDED----GRLHLTREGGHSRRRILHAA---D-----ATGKEIMTALLKKVRNRPNITVLEGA  155 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCC----CceeeeeecccCCceEEEec---C-----CccHHHHHHHHHHHhcCCCcEEEecc
Confidence               112333333332111000    01111111111100000000   0     11236677777666   589999999


Q ss_pred             eEEEEEEcCC-ceEEEEEcCC----cEEEcCEEEEcCCCChHh
Q 022277          179 ELAKIETSGN-GVTILELVNG----TRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       179 ~v~~i~~~~~-~~~~v~~~~g----~~~~ad~vV~A~G~~s~~  216 (300)
                      .+.++..+++ .+.+|.+.+.    ..+.++.||+|+|..+.+
T Consensus       156 ~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l  198 (518)
T COG0029         156 EALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL  198 (518)
T ss_pred             hhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence            9999988887 4335666432    468899999999987755

>PRK07846 mycothione reductase; Reviewed

Probab=98.85  E-value=4.3e-08  Score=88.71  Aligned_cols=99  Identities=22%  Similarity=0.367  Sum_probs=73.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      +.+++|||||+.|+.+|..|++.|.+|+++|+.+.+.+.                  ...++                  
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~~------------------  209 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------LDDDI------------------  209 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------cCHHH------------------
Confidence            469999999999999999999999999999998765210                  00000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                          +..+. .+.+  .++++++++++++++.++++ ..+.+.+|+.+++|.||+|+|.....
T Consensus       210 --------------------~~~l~-~l~~--~~v~i~~~~~v~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        210 --------------------SERFT-ELAS--KRWDVRLGRNVVGVSQDGSG-VTLRLDDGSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             --------------------HHHHH-HHHh--cCeEEEeCCEEEEEEEcCCE-EEEEECCCcEeecCEEEEEECCccCc
Confidence                                01122 2222  27899999999999876555 44777788889999999999987643

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.85  E-value=5.8e-08  Score=88.31  Aligned_cols=38  Identities=34%  Similarity=0.455  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~   94 (300)
                      ...+|+|||||++||++|+.|.+.    |.+|+|+|+.+.++
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G   62 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG   62 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence            357999999999999999999995    68999999999764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.84  E-value=4.3e-08  Score=88.72  Aligned_cols=100  Identities=21%  Similarity=0.352  Sum_probs=75.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+++|||||++|+.+|..|++.|.+|+++|+.+.+.+.                  +..+                   
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------~d~~-------------------  208 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------FDDD-------------------  208 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------cCHH-------------------
Confidence            468999999999999999999999999999988754210                  0000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                         .+..+.+.|.+.  |++++++++|++++.++++ ..+.+.+|+++.+|.||.|+|.....
T Consensus       209 -------------------~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       209 -------------------MRALLARNMEGR--GIRIHPQTSLTSITKTDDG-LKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             -------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEcCCe-EEEEEcCCcEeecCEEEEeeCCCcCC
Confidence                               011233334333  8999999999999876655 34777788889999999999987643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.84  E-value=4e-08  Score=88.77  Aligned_cols=100  Identities=14%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+...                  .+                  
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~------------------~~------------------  199 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE------------------PS------------------  199 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCC------------------HH------------------
Confidence            346899999999999999999999999999999886521100                  00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                          ....+.+.|.+.  |++++++++|++++.+++.+. +. .+|+++.+|.||+|+|.....
T Consensus       200 --------------------~~~~~~~~l~~~--GI~i~~~~~V~~i~~~~~~v~-v~-~~g~~i~~D~viva~G~~p~~  255 (438)
T PRK07251        200 --------------------VAALAKQYMEED--GITFLLNAHTTEVKNDGDQVL-VV-TEDETYRFDALLYATGRKPNT  255 (438)
T ss_pred             --------------------HHHHHHHHHHHc--CCEEEcCCEEEEEEecCCEEE-EE-ECCeEEEcCEEEEeeCCCCCc
Confidence                                011222333333  899999999999987655432 43 356689999999999987653

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.84  E-value=6.3e-08  Score=90.22  Aligned_cols=38  Identities=29%  Similarity=0.621  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .++||||||+|.+||++|+.+++.|.+|+|+||.+..+
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g   47 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG   47 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence            46899999999999999999999999999999998653

>PLN02507 glutathione reductase

Probab=98.83  E-value=8.9e-08  Score=87.69  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      ..+|||+|||||++|+.+|..+++.|.+|+|+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            3468999999999999999999999999999997

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.82  E-value=5.6e-08  Score=88.54  Aligned_cols=100  Identities=18%  Similarity=0.327  Sum_probs=73.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+...                  .+                   
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d------------------~~-------------------  214 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNED------------------AE-------------------  214 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccC------------------HH-------------------
Confidence            46999999999999999999999999999998876521100                  00                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc--CC--cEEEcCEEEEcCCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIVIGCDGIR  213 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~vV~A~G~~  213 (300)
                                         ....+.+.|.+.  |++++++++|++++.+++. +.+.+.  +|  +.+.+|.||.|+|..
T Consensus       215 -------------------~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~~  272 (466)
T PRK07818        215 -------------------VSKEIAKQYKKL--GVKILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGFA  272 (466)
T ss_pred             -------------------HHHHHHHHHHHC--CCEEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCcc
Confidence                               011333444433  8999999999999876554 334443  56  369999999999987


Q ss_pred             hHh
Q 022277          214 SPI  216 (300)
Q Consensus       214 s~~  216 (300)
                      ...
T Consensus       273 pn~  275 (466)
T PRK07818        273 PRV  275 (466)
T ss_pred             cCC
Confidence            654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.82  E-value=3e-08  Score=90.43  Aligned_cols=33  Identities=33%  Similarity=0.621  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      ..+||+|||||++|+++|..+++.|.+|+|+|+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            468999999999999999999999999999998

>PRK14727 putative mercuric reductase; Provisional

Probab=98.81  E-value=6.4e-08  Score=88.36  Aligned_cols=38  Identities=29%  Similarity=0.437  Sum_probs=35.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..++||+|||||++|+++|..|++.|.+|+|+|+.+.+
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~   51 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI   51 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            35799999999999999999999999999999998655

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.81  E-value=2e-08  Score=97.23  Aligned_cols=37  Identities=30%  Similarity=0.464  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            3579999999999999999999999999999998865

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.80  E-value=3.6e-08  Score=88.64  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+.+|||||||.+|+.+|..|.+.+.+|+|||+.+..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            4579999999999999999998778999999988754

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=8.8e-09  Score=89.47  Aligned_cols=144  Identities=22%  Similarity=0.337  Sum_probs=86.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-cCC-------CCceeeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LRT-------GGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK  127 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~-~~~-------~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  127 (300)
                      ...+||||||||-||+.+|...+|.|.+.+++-.+-. ++.       +|-+-+.-.+..+.|      +.+-.......
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDAL------dGl~~rvcD~s   99 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDAL------DGLCSRVCDQS   99 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhh------cchHhhhhhhh
Confidence            3679999999999999999999999999888877642 211       222222111111111      11111111111


Q ss_pred             ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEc-CCc----eEEEEEcCCc
Q 022277          128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETS-GNG----VTILELVNGT  199 (300)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~-~~~----~~~v~~~~g~  199 (300)
                      ++.+.-.+-.       .....+..-.+++|..+...|.+.+   ++..|+.+. |.++... ++.    +.+|.+.+|.
T Consensus       100 ~vq~k~LNrs-------~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt  171 (679)
T KOG2311|consen  100 GVQYKVLNRS-------KGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGT  171 (679)
T ss_pred             hhhHHHhhcc-------CCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhh-hhheeeccCCCCceEEEEEEEecCc
Confidence            1111110000       0111233445688888888888877   467777654 5555433 331    5689999999


Q ss_pred             EEEcCEEEEcCCCC
Q 022277          200 RIYANIVIGCDGIR  213 (300)
Q Consensus       200 ~~~ad~vV~A~G~~  213 (300)
                      .+.|+.||+.||.+
T Consensus       172 ~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  172 VVYAESVILTTGTF  185 (679)
T ss_pred             EeccceEEEeeccc
Confidence            99999999999965

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.80  E-value=1.9e-08  Score=88.72  Aligned_cols=105  Identities=13%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      +|||||||++|+.+|..|.++   +.+|+|+|+++.......    .             ..+......           
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~----~-------------~~~~~g~~~-----------   52 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM----L-------------PGMIAGHYS-----------   52 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch----h-------------hHHHheeCC-----------
Confidence            589999999999999999754   689999998875421110    0             000000000           


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                   .... ..   .+.+.+.+  .+++++.+ +|++++.+++.   |.+++|+++.+|+||+|+|....
T Consensus        53 -------------~~~~-~~---~~~~~~~~--~gv~~~~~-~v~~id~~~~~---V~~~~g~~~~yD~LviAtG~~~~  108 (364)
T TIGR03169        53 -------------LDEI-RI---DLRRLARQ--AGARFVIA-EATGIDPDRRK---VLLANRPPLSYDVLSLDVGSTTP  108 (364)
T ss_pred             -------------HHHh-cc---cHHHHHHh--cCCEEEEE-EEEEEecccCE---EEECCCCcccccEEEEccCCCCC
Confidence                         0000 00   11111211  27888765 79999877654   77888888999999999998664

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.80  E-value=8.5e-08  Score=86.58  Aligned_cols=94  Identities=19%  Similarity=0.328  Sum_probs=70.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|+++.+.+...                  +..+                   
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------~d~~-------------------  190 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------MDAD-------------------  190 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------cCHH-------------------
Confidence            468999999999999999999999999999998754210                  0000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                         -...+.+.|.+.  |++++++++|++++.  +.   |.+.+|+.+.+|.|+.|+|...
T Consensus       191 -------------------~~~~l~~~l~~~--gI~i~~~~~v~~i~~--~~---v~~~~g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        191 -------------------MNQPILDELDKR--EIPYRLNEEIDAING--NE---VTFKSGKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             -------------------HHHHHHHHHHhc--CCEEEECCeEEEEeC--CE---EEECCCCEEEeCEEEECcCCCc
Confidence                               011333444433  899999999999963  22   6677788899999999999865

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.79  E-value=7.5e-08  Score=87.62  Aligned_cols=101  Identities=25%  Similarity=0.401  Sum_probs=72.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.+...                  .+                  
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d------------------~~------------------  216 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTD------------------TE------------------  216 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCC------------------HH------------------
Confidence            457999999999999999999999999999999876521100                  00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---C--CcEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---N--GTRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~--g~~~~ad~vV~A~G  211 (300)
                                          .+..+.+.|.+.  |++++++++|++++.+++++. +.+.   +  ++.+.+|.||+|+|
T Consensus       217 --------------------~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G  273 (466)
T PRK06115        217 --------------------TAKTLQKALTKQ--GMKFKLGSKVTGATAGADGVS-LTLEPAAGGAAETLQADYVLVAIG  273 (466)
T ss_pred             --------------------HHHHHHHHHHhc--CCEEEECcEEEEEEEcCCeEE-EEEEEcCCCceeEEEeCEEEEccC
Confidence                                011333444333  899999999999987655532 4332   2  34799999999999


Q ss_pred             CChHh
Q 022277          212 IRSPI  216 (300)
Q Consensus       212 ~~s~~  216 (300)
                      ..+..
T Consensus       274 ~~pn~  278 (466)
T PRK06115        274 RRPYT  278 (466)
T ss_pred             Ccccc
Confidence            87543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.79  E-value=8.5e-08  Score=87.11  Aligned_cols=99  Identities=25%  Similarity=0.386  Sum_probs=71.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+++|||||++|+.+|..|++.|.+|+|+|+.+.+.+...                  .+                   
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d------------------~e-------------------  212 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGED------------------ED-------------------  212 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcccc------------------HH-------------------
Confidence            46899999999999999999999999999999876521100                  00                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCChH
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRSP  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s~  215 (300)
                                         -...+.+.|.+.  |++++++++|++++.++.. +.+.. +|  ..+.+|.||+|+|..+.
T Consensus       213 -------------------~~~~l~~~L~~~--GI~i~~~~~V~~i~~~~~~-v~~~~-~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        213 -------------------IAHILREKLEND--GVKIFTGAALKGLNSYKKQ-ALFEY-EGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             -------------------HHHHHHHHHHHC--CCEEEECCEEEEEEEcCCE-EEEEE-CCceEEEEeCEEEEecCCccC
Confidence                               011333444433  8999999999999866544 32433 34  36899999999998765


Q ss_pred             h
Q 022277          216 I  216 (300)
Q Consensus       216 ~  216 (300)
                      .
T Consensus       270 ~  270 (458)
T PRK06912        270 V  270 (458)
T ss_pred             C
Confidence            4

>TIGR02053 MerA mercuric reductase

Probab=98.79  E-value=7.1e-08  Score=87.82  Aligned_cols=100  Identities=21%  Similarity=0.359  Sum_probs=72.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.+...                  .+                   
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d------------------~~-------------------  208 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREE------------------PE-------------------  208 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccC------------------HH-------------------
Confidence            47899999999999999999999999999999876521100                  00                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CCcEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~~~~ad~vV~A~G~~s  214 (300)
                                         ....+.+.|.+.  |++++++++|++++.+++. ..+.+.   +++++++|.||+|+|...
T Consensus       209 -------------------~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~ViiA~G~~p  266 (463)
T TIGR02053       209 -------------------ISAAVEEALAEE--GIEVVTSAQVKAVSVRGGG-KIITVEKPGGQGEVEADELLVATGRRP  266 (463)
T ss_pred             -------------------HHHHHHHHHHHc--CCEEEcCcEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEEeECCCc
Confidence                               011233333333  8999999999999876554 334443   235799999999999866


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       267 ~~  268 (463)
T TIGR02053       267 NT  268 (463)
T ss_pred             CC
Confidence            43

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.79  E-value=7e-08  Score=85.48  Aligned_cols=104  Identities=14%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+|+|||||++|+.+|..|.+.  ..+|+|+++.+........               +...+ .               
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~---------------l~~~~-~---------------   51 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD---------------LSHVF-S---------------   51 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc---------------CcHHH-h---------------
Confidence            5899999999999999999886  4589999988754211000               00000 0               


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHH----HHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILL----ETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~----~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                                       ......++.    +.+.+.. +++++.+++|++++.++..   |.+ ++..+.+|.||+|+|.
T Consensus        52 -----------------~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~~~~---v~~-~~~~~~yd~LVlATG~  109 (377)
T PRK04965         52 -----------------QGQRADDLTRQSAGEFAEQF-NLRLFPHTWVTDIDAEAQV---VKS-QGNQWQYDKLVLATGA  109 (377)
T ss_pred             -----------------CCCCHHHhhcCCHHHHHHhC-CCEEECCCEEEEEECCCCE---EEE-CCeEEeCCEEEECCCC
Confidence                             000001111    1122222 8899999999999876543   444 4567999999999998


Q ss_pred             ChH
Q 022277          213 RSP  215 (300)
Q Consensus       213 ~s~  215 (300)
                      ...
T Consensus       110 ~~~  112 (377)
T PRK04965        110 SAF  112 (377)
T ss_pred             CCC
Confidence            653

>PRK13748 putative mercuric reductase; Provisional

Probab=98.78  E-value=1e-07  Score=89.00  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4699999999999999999999999999999987

>PRK06370 mercuric reductase; Validated

Probab=98.78  E-value=9.6e-08  Score=86.95  Aligned_cols=100  Identities=25%  Similarity=0.365  Sum_probs=72.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+.-                  ..+                   
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~------------------~~~-------------------  213 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE------------------DED-------------------  213 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc------------------CHH-------------------
Confidence            4799999999999999999999999999999988652110                  000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE--c-CCcEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL--V-NGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~--~-~g~~~~ad~vV~A~G~~s  214 (300)
                                         ....+.+.|.+  .|++++++++|++++.++++. .+.+  . ++..+.+|.||.|+|...
T Consensus       214 -------------------~~~~l~~~l~~--~GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~i~~D~Vi~A~G~~p  271 (463)
T PRK06370        214 -------------------VAAAVREILER--EGIDVRLNAECIRVERDGDGI-AVGLDCNGGAPEITGSHILVAVGRVP  271 (463)
T ss_pred             -------------------HHHHHHHHHHh--CCCEEEeCCEEEEEEEcCCEE-EEEEEeCCCceEEEeCEEEECcCCCc
Confidence                               01123333333  289999999999998766543 2333  2 335799999999999876


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       272 n~  273 (463)
T PRK06370        272 NT  273 (463)
T ss_pred             CC
Confidence            43

>PTZ00058 glutathione reductase; Provisional

Probab=98.78  E-value=6.1e-08  Score=89.48  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..++||+|||||++|+.+|..+++.|.+|+|+|+.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            36799999999999999999999999999999986

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.77  E-value=1.4e-07  Score=86.18  Aligned_cols=100  Identities=17%  Similarity=0.350  Sum_probs=73.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.+...                  .++                  
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d------------------~~~------------------  226 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAAD------------------EQV------------------  226 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCC------------------HHH------------------
Confidence            46999999999999999999999999999999876521100                  000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC--C--cEEEcCEEEEcCCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGIR  213 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~~  213 (300)
                                          ...+.+.|.+  .|++++++++|++++.+++++ .+.+.+  |  +.+++|.|++|+|..
T Consensus       227 --------------------~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~  283 (475)
T PRK06327        227 --------------------AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGV-SVAYTDADGEAQTLEVDKLIVSIGRV  283 (475)
T ss_pred             --------------------HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEE-EEEEEeCCCceeEEEcCEEEEccCCc
Confidence                                1123333333  389999999999998776653 355544  3  469999999999987


Q ss_pred             hHh
Q 022277          214 SPI  216 (300)
Q Consensus       214 s~~  216 (300)
                      ...
T Consensus       284 p~~  286 (475)
T PRK06327        284 PNT  286 (475)
T ss_pred             cCC
Confidence            654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.77  E-value=4.9e-08  Score=85.35  Aligned_cols=125  Identities=23%  Similarity=0.329  Sum_probs=85.6

Q ss_pred             ccceeeecchhhHHHHHHh----hhhcc-C--CCCcEEEECCCHHHHHHHHHHHHc-------------CCcEEEEecCC
Q 022277           32 FCFQTRTRSRSKAIRLSIA----KAEAD-V--RKEDIVIVGAGIAGLATAVSLQRL-------------GIGSLVIEQAD   91 (300)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~----~~~~~-~--~~~dVvIIGgG~aGl~~A~~L~~~-------------G~~V~viE~~~   91 (300)
                      +.+..++.+++..++....    ..... .  ...+++|||||+.|.++|-+|+.+             .++|+|+|+.+
T Consensus       122 ~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p  201 (405)
T COG1252         122 YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP  201 (405)
T ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence            4566788888877776443    11111 1  235799999999999999999752             14899999998


Q ss_pred             CcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCC
Q 022277           92 SLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPP  171 (300)
Q Consensus        92 ~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g  171 (300)
                      .+.+...                  ..+                                      +....+.|.+.  |
T Consensus       202 ~ILp~~~------------------~~l--------------------------------------~~~a~~~L~~~--G  223 (405)
T COG1252         202 RILPMFP------------------PKL--------------------------------------SKYAERALEKL--G  223 (405)
T ss_pred             hhccCCC------------------HHH--------------------------------------HHHHHHHHHHC--C
Confidence            7632110                  110                                      11223334333  9


Q ss_pred             CeEEeCCeEEEEEEcCCceEEEEEcCCc-EEEcCEEEEcCCCC-hHhhhh
Q 022277          172 ESVQFSSELAKIETSGNGVTILELVNGT-RIYANIVIGCDGIR-SPIAKW  219 (300)
Q Consensus       172 ~~i~~~~~v~~i~~~~~~~~~v~~~~g~-~~~ad~vV~A~G~~-s~~r~~  219 (300)
                      ++|++++.|++++.+  +   |.+++|+ .+.++.+|.|+|.. +++-+.
T Consensus       224 V~v~l~~~Vt~v~~~--~---v~~~~g~~~I~~~tvvWaaGv~a~~~~~~  268 (405)
T COG1252         224 VEVLLGTPVTEVTPD--G---VTLKDGEEEIPADTVVWAAGVRASPLLKD  268 (405)
T ss_pred             CEEEcCCceEEECCC--c---EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence            999999999999754  3   7788887 49999999999986 455555

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.77  E-value=1.2e-07  Score=86.30  Aligned_cols=33  Identities=36%  Similarity=0.589  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~   34 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK   34 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            569999999999999999999999999999999

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.77  E-value=4.1e-08  Score=87.76  Aligned_cols=43  Identities=37%  Similarity=0.730  Sum_probs=37.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceee
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT  101 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~  101 (300)
                      ..||++|||||++|..+|..+++.|.+|.++|+....  +|....
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~l--GGtCln   45 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL--GGTCLN   45 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCc--CceEEe
Confidence            5799999999999999999999999999999999744  454433

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.75  E-value=4.9e-08  Score=94.15  Aligned_cols=109  Identities=15%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      +.+|||||+|++|+.+|..|.++    +++|+||++.+.+.....               .+...+..  ..        
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~---------------~L~~~~~~--~~--------   57 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV---------------HLSSYFSH--HT--------   57 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC---------------cchHhHcC--CC--------
Confidence            45899999999999999999764    579999999987631110               00000000  00        


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                      .... ....   .+.+.+  .+++++.+++|+.+..+...   |.+.+|+.+.+|.||+|+|..
T Consensus        58 ----------------~~~l-~~~~---~~~~~~--~gI~~~~g~~V~~Id~~~~~---V~~~~G~~i~yD~LVIATGs~  112 (847)
T PRK14989         58 ----------------AEEL-SLVR---EGFYEK--HGIKVLVGERAITINRQEKV---IHSSAGRTVFYDKLIMATGSY  112 (847)
T ss_pred             ----------------HHHc-cCCC---HHHHHh--CCCEEEcCCEEEEEeCCCcE---EEECCCcEEECCEEEECCCCC
Confidence                            0000 0000   111212  28899999999999775432   677888889999999999987


Q ss_pred             hHh
Q 022277          214 SPI  216 (300)
Q Consensus       214 s~~  216 (300)
                      ...
T Consensus       113 p~~  115 (847)
T PRK14989        113 PWI  115 (847)
T ss_pred             cCC
Confidence            543

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.75  E-value=9.7e-08  Score=86.97  Aligned_cols=34  Identities=32%  Similarity=0.626  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|..|+++|.+|+|+|+.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3589999999999999999999999999999986

>PTZ00058 glutathione reductase; Provisional

Probab=98.75  E-value=1.3e-07  Score=87.25  Aligned_cols=100  Identities=18%  Similarity=0.213  Sum_probs=72.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+.+.                  +..+                   
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------~d~~-------------------  279 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------FDET-------------------  279 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------CCHH-------------------
Confidence            579999999999999999999999999999998754210                  0000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC-cEEEcCEEEEcCCCChH
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRSP  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~s~  215 (300)
                                         ....+.+.|.+.  |+++++++.|.+++.++++.+.+...++ +++++|.|++|+|....
T Consensus       280 -------------------i~~~l~~~L~~~--GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        280 -------------------IINELENDMKKN--NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             -------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence                               011334444443  8999999999999876542233444444 47999999999997654

>PLN02546 glutathione reductase

Probab=98.75  E-value=3e-07  Score=84.96  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      .+|||+|||||++|..+|..++++|.+|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            358999999999999999999999999999996

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.75  E-value=4.4e-08  Score=94.31  Aligned_cols=107  Identities=13%  Similarity=0.137  Sum_probs=69.1

Q ss_pred             EEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           61 IVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        61 VvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      |||||||++|+.+|..|.+.   +++|+|||+.+.+.....               .+.. +......            
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~---------------~L~~-~l~g~~~------------   52 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI---------------LLSS-VLQGEAD------------   52 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc---------------cccH-HHCCCCC------------
Confidence            68999999999999999875   469999999987521100               0000 0000000            


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                  .... .+..   .+.+.+  .+++++++++|+.++.+...   |.+.+|+.+.+|.||+|+|.....
T Consensus        53 ------------~~~l-~~~~---~~~~~~--~gv~~~~g~~V~~Id~~~k~---V~~~~g~~~~yD~LVlATGs~p~~  110 (785)
T TIGR02374        53 ------------LDDI-TLNS---KDWYEK--HGITLYTGETVIQIDTDQKQ---VITDAGRTLSYDKLILATGSYPFI  110 (785)
T ss_pred             ------------HHHc-cCCC---HHHHHH--CCCEEEcCCeEEEEECCCCE---EEECCCcEeeCCEEEECCCCCcCC
Confidence                        0000 0000   112222  28999999999999876543   778888889999999999986543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.74  E-value=7.2e-08  Score=88.60  Aligned_cols=39  Identities=28%  Similarity=0.524  Sum_probs=35.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..++||+|||||.|||.+|+.++..|++|+|+||....+
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            367899999999999999999999999999999988654

>TIGR02053 MerA mercuric reductase

Probab=98.74  E-value=9.3e-08  Score=87.06  Aligned_cols=33  Identities=33%  Similarity=0.596  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +||+||||||+|+++|..|+++|++|+|+|+..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            699999999999999999999999999999875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.74  E-value=1.3e-07  Score=85.46  Aligned_cols=100  Identities=14%  Similarity=0.211  Sum_probs=73.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.+...                  .+                  
T Consensus       157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~------------------~~------------------  200 (441)
T PRK08010        157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRED------------------RD------------------  200 (441)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcC------------------HH------------------
Confidence            346899999999999999999999999999999875421100                  00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                          -...+.+.|.+.  |++++++++|++++.+++. +.+.++++ .+.+|.||+|+|.....
T Consensus       201 --------------------~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        201 --------------------IADNIATILRDQ--GVDIILNAHVERISHHENQ-VQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             --------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCE-EEEEEcCC-eEEeCEEEEeecCCcCC
Confidence                                011233344333  8999999999999876554 34666555 58999999999987653

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.74  E-value=1.7e-07  Score=81.87  Aligned_cols=123  Identities=17%  Similarity=0.196  Sum_probs=93.0

Q ss_pred             CCccceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHH
Q 022277           30 SGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV  109 (300)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~  109 (300)
                      ....++.|..++++.+.....      ....|++||+|..|+.+|..|...+.+|+++++.+.+...-            
T Consensus       191 ~~nv~~ireieda~~l~~~~~------~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~l------------  252 (478)
T KOG1336|consen  191 LKNVFYLREIEDANRLVAAIQ------LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRL------------  252 (478)
T ss_pred             ccceeeeccHHHHHHHHHHhc------cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhh------------
Confidence            334566677777766655544      46789999999999999999999999999999988662110            


Q ss_pred             HHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC-
Q 022277          110 LDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN-  188 (300)
Q Consensus       110 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~-  188 (300)
                                                                 +..--+..+...+.+.  |+++++++.+.+++.+++ 
T Consensus       253 -------------------------------------------f~~~i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~G  287 (478)
T KOG1336|consen  253 -------------------------------------------FGPSIGQFYEDYYENK--GVKFYLGTVVSSLEGNSDG  287 (478)
T ss_pred             -------------------------------------------hhHHHHHHHHHHHHhc--CeEEEEecceeecccCCCC
Confidence                                                       0001122344444444  899999999999998874 


Q ss_pred             ceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          189 GVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       189 ~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+..|.+.+|+++.||.||.+.|+.+.
T Consensus       288 ev~~V~l~dg~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  288 EVSEVKLKDGKTLEADLVVVGIGIKPN  314 (478)
T ss_pred             cEEEEEeccCCEeccCeEEEeeccccc
Confidence            577899999999999999999998654

>TIGR03452 mycothione_red mycothione reductase

Probab=98.74  E-value=1.9e-07  Score=84.66  Aligned_cols=98  Identities=21%  Similarity=0.393  Sum_probs=72.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+++|||||+.|+.+|..|++.|.+|+++|+.+.+.+.                  +..++                  
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~------------------~d~~~------------------  212 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH------------------LDEDI------------------  212 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc------------------cCHHH------------------
Confidence            469999999999999999999999999999988754210                  00000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                          ...+.+ +.+  .+++++++++|++++.++++ +.+.+.+|+++++|.|++|+|....
T Consensus       213 --------------------~~~l~~-~~~--~gI~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       213 --------------------SDRFTE-IAK--KKWDIRLGRNVTAVEQDGDG-VTLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             --------------------HHHHHH-HHh--cCCEEEeCCEEEEEEEcCCe-EEEEEcCCCEEEcCEEEEeeccCcC
Confidence                                012222 222  27899999999999876655 4477777888999999999997654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.74  E-value=2.9e-08  Score=90.17  Aligned_cols=38  Identities=32%  Similarity=0.493  Sum_probs=35.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            35689999999999999999999999999999998865

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.73  E-value=1.3e-08  Score=79.35  Aligned_cols=38  Identities=34%  Similarity=0.501  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~   94 (300)
                      ...||+|||+|-+||++||..+++  .++|.|||..-.++
T Consensus        75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            457999999999999999999965  67999999988774

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.73  E-value=8.8e-08  Score=80.33  Aligned_cols=37  Identities=30%  Similarity=0.479  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+|+|||+|++||++|+.|+++ .+|+++|.+...+
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlG   43 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLG   43 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEecccccc
Confidence            568999999999999999999987 8999999998775

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.72  E-value=1.4e-07  Score=82.37  Aligned_cols=53  Identities=19%  Similarity=0.298  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhcCCCCeEEeC--------CeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277          158 RRILLETLANQLPPESVQFS--------SELAKIETSGNGVTILELVNGTRIYANIVIGCD  210 (300)
Q Consensus       158 ~~~l~~~l~~~~~g~~i~~~--------~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~  210 (300)
                      ...+++.|.+..++..+.++        ++|..|..++.+-+.|++.||+.+.||.||+..
T Consensus       222 y~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTv  282 (498)
T KOG0685|consen  222 YKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTV  282 (498)
T ss_pred             HHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEe
Confidence            34666777666655455544        999999988765566999999999999999764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.72  E-value=2.3e-07  Score=83.61  Aligned_cols=98  Identities=22%  Similarity=0.362  Sum_probs=71.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+++++.+.+....                 +..+                   
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~-----------------~~~~-------------------  180 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL-----------------FDEE-------------------  180 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc-----------------cCHH-------------------
Confidence            4699999999999999999999999999999887541000                 0000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                         ....+.+.|.+.  |++++++++|+++..++ . + +.+.+|+++.+|.||.|+|....
T Consensus       181 -------------------~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~-~-~-v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       181 -------------------MNQIVEEELKKH--EINLRLNEEVDSIEGEE-R-V-KVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             -------------------HHHHHHHHHHHc--CCEEEeCCEEEEEecCC-C-E-EEEcCCCEEEeCEEEECCCccCC
Confidence                               011233333333  89999999999997543 3 2 45677888999999999998643

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.72  E-value=3.7e-08  Score=94.69  Aligned_cols=37  Identities=27%  Similarity=0.465  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~  466 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI  466 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4679999999999999999999999999999997655

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.71  E-value=2e-07  Score=83.39  Aligned_cols=118  Identities=26%  Similarity=0.333  Sum_probs=83.7

Q ss_pred             ceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHc
Q 022277           34 FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDAL  113 (300)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~  113 (300)
                      +..+...+...++....      ...+++|||+|++|+.+|..|+++|++|+++|+.+.+......              
T Consensus       118 ~~~~~~~~~~~~~~~~~------~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------  177 (415)
T COG0446         118 VTLRLREDAEALKGGAE------PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------  177 (415)
T ss_pred             EEECCHHHHHHHHHHHh------ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------
Confidence            44445555544444333      2689999999999999999999999999999999977321100              


Q ss_pred             CCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEE-
Q 022277          114 GVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTI-  192 (300)
Q Consensus       114 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~-  192 (300)
                         .                                      .-...+.+.|.+.  |++++++.++.+++...+.... 
T Consensus       178 ---~--------------------------------------~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~~~~~~~  214 (415)
T COG0446         178 ---P--------------------------------------EVAEELAELLEKY--GVELLLGTKVVGVEGKGNTLVVE  214 (415)
T ss_pred             ---H--------------------------------------HHHHHHHHHHHHC--CcEEEeCCceEEEEcccCcceee
Confidence               0                                      0011233333333  7899999999999987665332 


Q ss_pred             -EEEcCCcEEEcCEEEEcCCCCh
Q 022277          193 -LELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       193 -v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                       +...++..+.+|.++.+.|...
T Consensus       215 ~~~~~~~~~~~~d~~~~~~g~~p  237 (415)
T COG0446         215 RVVGIDGEEIKADLVIIGPGERP  237 (415)
T ss_pred             EEEEeCCcEEEeeEEEEeecccc
Confidence             5677788899999999999766

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.69  E-value=2.3e-07  Score=85.10  Aligned_cols=99  Identities=22%  Similarity=0.204  Sum_probs=73.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+++|||||++|+.+|..|++.|.+|+|+++.. +...                  +..+                   
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~~------------------~d~~-------------------  223 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLRG------------------FDRQ-------------------  223 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cccc------------------CCHH-------------------
Confidence            4589999999999999999999999999998742 2100                  0000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                         ....+.+.|.+.  |+++++++.+++++..++. ..+.+.+|+++.+|.||.|.|..+..
T Consensus       224 -------------------~~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        224 -------------------CSEKVVEYMKEQ--GTLFLEGVVPINIEKMDDK-IKVLFSDGTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             -------------------HHHHHHHHHHHc--CCEEEcCCeEEEEEEcCCe-EEEEECCCCEEEcCEEEEeeCCCCCc
Confidence                               012334444433  8999999999999876554 34777788889999999999987654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.69  E-value=3.8e-08  Score=96.64  Aligned_cols=37  Identities=32%  Similarity=0.514  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            3579999999999999999999999999999998765

>PLN02546 glutathione reductase

Probab=98.69  E-value=2.4e-07  Score=85.63  Aligned_cols=102  Identities=21%  Similarity=0.198  Sum_probs=73.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+|+|+.+.+...                  +..+                  
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------~d~~------------------  294 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------FDEE------------------  294 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------cCHH------------------
Confidence            4579999999999999999999999999999988754210                  0000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                          .+..+.+.|.+.  |+++++++++++++..+++...+.+.+++...+|.||.|.|.....
T Consensus       295 --------------------~~~~l~~~L~~~--GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        295 --------------------VRDFVAEQMSLR--GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             --------------------HHHHHHHHHHHC--CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence                                011233444333  8999999999999875444344666655445589999999987654

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.69  E-value=4.5e-07  Score=79.92  Aligned_cols=61  Identities=20%  Similarity=0.145  Sum_probs=46.6

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCC-hH-hhhhc
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIR-SP-IAKWI  220 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~-s~-~r~~~  220 (300)
                      +|.+.|.+.+  .|++++.+++|++++.+++++..|.+.++  ..++||.||+|+|+| |. +.+.+
T Consensus       264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence            4455555544  48899999999999988887776776765  479999999999999 74 54444

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.68  E-value=6.5e-08  Score=87.54  Aligned_cols=38  Identities=32%  Similarity=0.462  Sum_probs=34.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...++|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            34689999999999999999999999999999998765

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.67  E-value=2.6e-07  Score=84.18  Aligned_cols=99  Identities=16%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+++|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                  
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~------------------d~~~------------------  217 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA------------------DKDI------------------  217 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcC------------------CHHH------------------
Confidence            4699999999999999999999999999999988652110                  0000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC--C--cEEEcCEEEEcCCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGIR  213 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~~  213 (300)
                                          ...+.+.|.+   .++++++++|++++..++++ .+.+.+  +  +++++|.||.|+|..
T Consensus       218 --------------------~~~~~~~l~~---~v~i~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~i~~D~vi~a~G~~  273 (471)
T PRK06467        218 --------------------VKVFTKRIKK---QFNIMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAVGRV  273 (471)
T ss_pred             --------------------HHHHHHHHhh---ceEEEcCCEEEEEEEcCCEE-EEEEEeCCCcceEEEeCEEEEeeccc
Confidence                                1122233322   26899999999998766653 355543  2  369999999999987


Q ss_pred             hHh
Q 022277          214 SPI  216 (300)
Q Consensus       214 s~~  216 (300)
                      ...
T Consensus       274 pn~  276 (471)
T PRK06467        274 PNG  276 (471)
T ss_pred             ccC
Confidence            654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.67  E-value=1.5e-07  Score=81.70  Aligned_cols=149  Identities=24%  Similarity=0.277  Sum_probs=70.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcCCCCc----eeeEchhHHHHHHHcCCcHHHHhccccccceEEE
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGT----SLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVK  132 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~~~g~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  132 (300)
                      .+|+|+||.||++|++|..|...+ +++..+||.+.+.....    +..++   ..+|+++-..   .....+.....+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q---~~fl~Dlvt~---~~P~s~~sflnYL   75 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQ---VSFLKDLVTL---RDPTSPFSFLNYL   75 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-S---S-TTSSSSTT---T-TTSTTSHHHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccc---cccccccCcC---cCCCCcccHHHHH
Confidence            479999999999999999999886 89999999887532211    00010   0001110000   0000000000000


Q ss_pred             cCCCceEEEecCCCCCCCcceeeecHHH---HHHHHHhcCCCCeEEeCCeEEEEEEcCCc---eEEEEEc----CCcEEE
Q 022277          133 SEDGRELRSFGFKDEDASQEVRAVERRI---LLETLANQLPPESVQFSSELAKIETSGNG---VTILELV----NGTRIY  202 (300)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~---l~~~l~~~~~g~~i~~~~~v~~i~~~~~~---~~~v~~~----~g~~~~  202 (300)
                      ...+.... +-      ......+.|.+   ++++.++++ ...++++++|++|+...+.   .+.|.+.    +++++.
T Consensus        76 ~~~~rl~~-f~------~~~~~~p~R~ef~dYl~Wva~~~-~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~  147 (341)
T PF13434_consen   76 HEHGRLYE-FY------NRGYFFPSRREFNDYLRWVAEQL-DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYR  147 (341)
T ss_dssp             HHTT-HHH-HH------HH--SS-BHHHHHHHHHHHHCCG-TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEE
T ss_pred             HHcCChhh-hh------hcCCCCCCHHHHHHHHHHHHHhC-CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEE
Confidence            00000000 00      00111244554   455555665 3459999999999987543   5778773    345899


Q ss_pred             cCEEEEcCCCChHhhhhc
Q 022277          203 ANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       203 ad~vV~A~G~~s~~r~~~  220 (300)
                      |+.||+|+|....+.+.+
T Consensus       148 ar~vVla~G~~P~iP~~~  165 (341)
T PF13434_consen  148 ARNVVLATGGQPRIPEWF  165 (341)
T ss_dssp             ESEEEE----EE---GGG
T ss_pred             eCeEEECcCCCCCCCcch
Confidence            999999999766665555

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.66  E-value=7e-08  Score=87.26  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR--LGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~--~G~~V~viE~~~~~   93 (300)
                      ...+|+||||||+|+++|..|++  .|++|+|+|+.+.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            46799999999999999999987  79999999999876

>PRK14694 putative mercuric reductase; Provisional

Probab=98.66  E-value=3.2e-07  Score=83.59  Aligned_cols=98  Identities=18%  Similarity=0.288  Sum_probs=70.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+++|||||++|+.+|..|++.|.+|+++++.... +..                  ..+                   
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l-~~~------------------~~~-------------------  219 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL-SQE------------------DPA-------------------  219 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC-CCC------------------CHH-------------------
Confidence            468999999999999999999999999999864321 000                  000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                         ....+.+.|.+.  |+++++++++++++.+++. +.+.++++ ++.+|.||+|+|..+..
T Consensus       220 -------------------~~~~l~~~l~~~--GI~v~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        220 -------------------VGEAIEAAFRRE--GIEVLKQTQASEVDYNGRE-FILETNAG-TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             -------------------HHHHHHHHHHhC--CCEEEeCCEEEEEEEcCCE-EEEEECCC-EEEeCEEEEccCCCCCc
Confidence                               011333334333  8999999999999876554 33555554 69999999999987654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.66  E-value=1.2e-07  Score=82.98  Aligned_cols=106  Identities=17%  Similarity=0.200  Sum_probs=69.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ...+|||||||.+|+.+|..|.+.-  .+|+++|+++...-..-                 ..++..             
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~pl-----------------L~eva~-------------   51 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPL-----------------LYEVAT-------------   51 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchh-----------------hhhhhc-------------
Confidence            4578999999999999999999974  89999999986421000                 000000             


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHH---HHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLE---TLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~---~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                                         ..++..++..   .+.+...++++. ..+|++|+.++..   |.++++..+.+|++|+|.|
T Consensus        52 -------------------g~l~~~~i~~p~~~~~~~~~~v~~~-~~~V~~ID~~~k~---V~~~~~~~i~YD~LVvalG  108 (405)
T COG1252          52 -------------------GTLSESEIAIPLRALLRKSGNVQFV-QGEVTDIDRDAKK---VTLADLGEISYDYLVVALG  108 (405)
T ss_pred             -------------------CCCChhheeccHHHHhcccCceEEE-EEEEEEEcccCCE---EEeCCCccccccEEEEecC
Confidence                               0011111111   111111134554 4579999888766   7788877899999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      ....
T Consensus       109 s~~~  112 (405)
T COG1252         109 SETN  112 (405)
T ss_pred             CcCC
Confidence            8664

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.66  E-value=2.9e-07  Score=83.99  Aligned_cols=99  Identities=16%  Similarity=0.130  Sum_probs=71.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+++|||||+.|+.+|..|++.|.+|+|+++. .+.+.                  +..+                   
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~------------------~d~~-------------------  221 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG------------------FDQD-------------------  221 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccc------------------cCHH-------------------
Confidence            458999999999999999999999999999974 32100                  0000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G~~s  214 (300)
                                         ....+.+.|.+.  |+++++++.+++++..++. ..|.+.++   +++.+|.||.|.|...
T Consensus       222 -------------------~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~p  279 (484)
T TIGR01438       222 -------------------CANKVGEHMEEH--GVKFKRQFVPIKVEQIEAK-VKVTFTDSTNGIEEEYDTVLLAIGRDA  279 (484)
T ss_pred             -------------------HHHHHHHHHHHc--CCEEEeCceEEEEEEcCCe-EEEEEecCCcceEEEeCEEEEEecCCc
Confidence                               011334444433  8999999999999876554 33666555   3799999999999865


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       280 n~  281 (484)
T TIGR01438       280 CT  281 (484)
T ss_pred             CC
Confidence            44

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.66  E-value=9.7e-08  Score=87.49  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      .+||+|||||++|+++|..|+++|.+|+|+|+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            589999999999999999999999999999973

>PRK14727 putative mercuric reductase; Provisional

Probab=98.64  E-value=3.6e-07  Score=83.44  Aligned_cols=98  Identities=15%  Similarity=0.225  Sum_probs=71.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|+++.... ...                  ..+                   
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l-~~~------------------d~~-------------------  229 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL-FRE------------------DPL-------------------  229 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC-Ccc------------------hHH-------------------
Confidence            468999999999999999999999999999975321 000                  000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                         ....+.+.|.+.  |++++++++|++++.+++. +.+.+.++ ++.+|.||+|+|.....
T Consensus       230 -------------------~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~~-~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        230 -------------------LGETLTACFEKE--GIEVLNNTQASLVEHDDNG-FVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             -------------------HHHHHHHHHHhC--CCEEEcCcEEEEEEEeCCE-EEEEEcCC-eEEeCEEEEccCCCCCc
Confidence                               011233333333  8999999999999876655 33666665 59999999999998754

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.64  E-value=1.3e-07  Score=82.88  Aligned_cols=37  Identities=35%  Similarity=0.430  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++|+++|..|++.|.+|+++|+.+.+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4579999999999999999999999999999998866

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.64  E-value=1.5e-07  Score=85.75  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~   90 (300)
                      .++||+|||||++|..+|..+++. |.+|+|+|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            569999999999999999999997 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.64  E-value=8.6e-08  Score=90.76  Aligned_cols=37  Identities=35%  Similarity=0.539  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4579999999999999999999999999999998765

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.64  E-value=2.7e-07  Score=82.97  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=69.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHH--------------cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccc
Q 022277           59 EDIVIVGAGIAGLATAVSLQR--------------LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL  124 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~--------------~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~  124 (300)
                      .+|+|||||++|+.+|..|+.              .|.+|+|+|+.+.+.+.-                  ..       
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~------------------~~-------  228 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSF------------------DQ-------  228 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccC------------------CH-------
Confidence            489999999999999999985              378999999887652110                  00       


Q ss_pred             cccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcC
Q 022277          125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYAN  204 (300)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad  204 (300)
                                                     -....+.+.|.+.  |++++++++|+++..  +.   |.+++|+++.+|
T Consensus       229 -------------------------------~~~~~~~~~L~~~--gV~v~~~~~v~~v~~--~~---v~~~~g~~i~~d  270 (424)
T PTZ00318        229 -------------------------------ALRKYGQRRLRRL--GVDIRTKTAVKEVLD--KE---VVLKDGEVIPTG  270 (424)
T ss_pred             -------------------------------HHHHHHHHHHHHC--CCEEEeCCeEEEEeC--CE---EEECCCCEEEcc
Confidence                                           0112344445443  999999999998863  33   668889899999


Q ss_pred             EEEEcCCCCh
Q 022277          205 IVIGCDGIRS  214 (300)
Q Consensus       205 ~vV~A~G~~s  214 (300)
                      .||.|.|...
T Consensus       271 ~vi~~~G~~~  280 (424)
T PTZ00318        271 LVVWSTGVGP  280 (424)
T ss_pred             EEEEccCCCC
Confidence            9999999654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.63  E-value=7.3e-07  Score=80.81  Aligned_cols=98  Identities=20%  Similarity=0.326  Sum_probs=69.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|.+.|.+|+++++.+.+.....                 ..+                   
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~-----------------~~~-------------------  192 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSF-----------------DKE-------------------  192 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhc-----------------CHH-------------------
Confidence            47899999999999999999999999999998775411000                 000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                         -...+.+.|.+.  |++++++++|++++.+ +.+..+.++++ .+.+|.||.|+|...
T Consensus       193 -------------------~~~~l~~~l~~~--gI~v~~~~~v~~i~~~-~~~~~v~~~~~-~i~~d~vi~a~G~~p  246 (444)
T PRK09564        193 -------------------ITDVMEEELREN--GVELHLNEFVKSLIGE-DKVEGVVTDKG-EYEADVVIVATGVKP  246 (444)
T ss_pred             -------------------HHHHHHHHHHHC--CCEEEcCCEEEEEecC-CcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence                               011223333332  8999999999999653 34344555544 799999999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.63  E-value=3.9e-07  Score=82.93  Aligned_cols=33  Identities=36%  Similarity=0.567  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .||+|||||++|+.+|..++++|.+|+|+|+..
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            489999999999999999999999999999875

>PRK13748 putative mercuric reductase; Provisional

Probab=98.60  E-value=5.5e-07  Score=84.08  Aligned_cols=98  Identities=12%  Similarity=0.204  Sum_probs=71.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|+++...+. ..                  ..+                   
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-~~------------------d~~-------------------  311 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-RE------------------DPA-------------------  311 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-cc------------------CHH-------------------
Confidence            4689999999999999999999999999999753210 00                  000                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                         ....+.+.|.+.  |++++++++|++++.+++. +.+.+.++ .+.+|.||+|+|.....
T Consensus       312 -------------------~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        312 -------------------IGEAVTAAFRAE--GIEVLEHTQASQVAHVDGE-FVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             -------------------HHHHHHHHHHHC--CCEEEcCCEEEEEEecCCE-EEEEecCC-eEEeCEEEEccCCCcCC
Confidence                               011333444333  8999999999999876554 33666555 69999999999987654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.60  E-value=5.6e-07  Score=82.92  Aligned_cols=94  Identities=24%  Similarity=0.396  Sum_probs=70.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+..                                          
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------------------------  389 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------------------------  389 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------------------------------------------
Confidence            46999999999999999999999999999997764310                                          


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGI  212 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~  212 (300)
                                          ...+.+.|.+ ..|+++++++.+++++.+++++..|.+.+   |  +.+.+|.||+|.|.
T Consensus       390 --------------------~~~l~~~l~~-~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~  448 (515)
T TIGR03140       390 --------------------DKVLQDKLKS-LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL  448 (515)
T ss_pred             --------------------hHHHHHHHhc-CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence                                0012233322 23899999999999987655555566643   2  36899999999997


Q ss_pred             Ch
Q 022277          213 RS  214 (300)
Q Consensus       213 ~s  214 (300)
                      ..
T Consensus       449 ~P  450 (515)
T TIGR03140       449 VP  450 (515)
T ss_pred             cC
Confidence            65

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.60  E-value=2.5e-07  Score=84.05  Aligned_cols=32  Identities=31%  Similarity=0.602  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|+|||||++|+++|..+++.|.+|+|+|+..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            79999999999999999999999999999875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.5e-07  Score=78.97  Aligned_cols=149  Identities=27%  Similarity=0.295  Sum_probs=92.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEE-EecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLV-IEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~v-iE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ...|||+||||||+|.++|...+|.|++.-| -||-.     |          +.++.+++..-+               
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-----G----------QvldT~~IENfI---------------  258 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-----G----------QVLDTMGIENFI---------------  258 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-----C----------eeccccchhhee---------------
Confidence            3569999999999999999999999998644 34332     1          122222221100               


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc--CCceEEEEEcCCcEEEcCEEEEcC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETS--GNGVTILELVNGTRIYANIVIGCD  210 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~ad~vV~A~  210 (300)
                                       ......-.+|...|.+..  ..++++...+.++++..  +++...|++.+|..+.++.||+++
T Consensus       259 -----------------sv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlst  321 (520)
T COG3634         259 -----------------SVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILAT  321 (520)
T ss_pred             -----------------ccccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEec
Confidence                             000112235666666655  26888888888888774  344577999999999999999999


Q ss_pred             CCChHhhhhcCCCCCccccceE-EEEEeeCCCCCCCCCceEEEEeCC
Q 022277          211 GIRSPIAKWIGFSEPKYVGHCA-YRGLGYYPNGQPFEPKLNYIYGRG  256 (300)
Q Consensus       211 G~~s~~r~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  256 (300)
                      |+.=+   .++  .|....+.. =...|++.+..-|.....-..|.|
T Consensus       322 GArWR---n~n--vPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGG  363 (520)
T COG3634         322 GARWR---NMN--VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGG  363 (520)
T ss_pred             Ccchh---cCC--CCchHHHhhCCeeeCCCCCCcccCCceEEEECCC
Confidence            97421   122  332221110 012477776666776665555544

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.58  E-value=9.2e-07  Score=74.03  Aligned_cols=43  Identities=35%  Similarity=0.638  Sum_probs=37.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS   99 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~   99 (300)
                      ...||+|||+|.+||.+|.+|+.+|.+|+|+|+.....-+|.+
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            4689999999999999999999999999999998876544443

>PRK10262 thioredoxin reductase; Provisional

Probab=98.58  E-value=8.6e-07  Score=76.80  Aligned_cols=99  Identities=16%  Similarity=0.253  Sum_probs=70.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                    .                   
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~--------------------~-------------------  185 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE--------------------K-------------------  185 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCC--------------------H-------------------
Confidence            3569999999999999999999999999999987643100                    0                   


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC------cEEEcCEEEEcC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG------TRIYANIVIGCD  210 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g------~~~~ad~vV~A~  210 (300)
                                         ..+..+.+.|.+  .++++++++.++++..++.++..|++.++      +++.+|.||.|.
T Consensus       186 -------------------~~~~~~~~~l~~--~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~  244 (321)
T PRK10262        186 -------------------ILIKRLMDKVEN--GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAI  244 (321)
T ss_pred             -------------------HHHHHHHhhccC--CCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEe
Confidence                               001122222222  27899999999999876544444555432      369999999999


Q ss_pred             CCChH
Q 022277          211 GIRSP  215 (300)
Q Consensus       211 G~~s~  215 (300)
                      |....
T Consensus       245 G~~p~  249 (321)
T PRK10262        245 GHSPN  249 (321)
T ss_pred             CCccC
Confidence            97654

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.58  E-value=3.1e-06  Score=75.10  Aligned_cols=61  Identities=23%  Similarity=0.303  Sum_probs=52.2

Q ss_pred             eeecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          154 RAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      ..++...+...|.+.+ .|++++++++|++++.++++ +.|.+.+|..+.||.||+|+|.++.
T Consensus       130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence            3578889999998877 47899999999999887665 6688888877999999999999984

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.57  E-value=1.9e-07  Score=84.81  Aligned_cols=37  Identities=32%  Similarity=0.555  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            4579999999999999999999999999999999865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.57  E-value=4.5e-07  Score=81.11  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-HcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQ-RLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~-~~G~~V~viE~~~~~~   94 (300)
                      ...+|+||||||+|+.+|..|. +.|++|+|+|+.+.++
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            5678999999999999999765 6799999999999873

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.57  E-value=4.9e-07  Score=84.80  Aligned_cols=33  Identities=24%  Similarity=0.509  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      +|||+|||||++|..+|..+++.|.+|+|+|+.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            689999999999999999999999999999975

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.56  E-value=4e-07  Score=77.38  Aligned_cols=101  Identities=19%  Similarity=0.331  Sum_probs=76.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+.+|||||.+||.++.-..+.|-+|+++|-.+.+.+.-                  ..++.                
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m------------------D~Eis----------------  255 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM------------------DGEIS----------------  255 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc------------------CHHHH----------------
Confidence            56899999999999999999999999999999888663211                  01111                


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G  211 (300)
                                            ..+.+.|.+  .|++++++++|++++.+.++.+.|++.+   +  ++++||.+.+|.|
T Consensus       256 ----------------------k~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG  311 (506)
T KOG1335|consen  256 ----------------------KAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG  311 (506)
T ss_pred             ----------------------HHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence                                  123333333  3899999999999999988655566543   2  3799999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      +...
T Consensus       312 RrP~  315 (506)
T KOG1335|consen  312 RRPF  315 (506)
T ss_pred             Cccc
Confidence            7653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.55  E-value=1.5e-07  Score=85.65  Aligned_cols=37  Identities=41%  Similarity=0.586  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            4579999999999999999999999999999998865

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.54  E-value=1.2e-06  Score=79.84  Aligned_cols=101  Identities=21%  Similarity=0.344  Sum_probs=69.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+.                  ...++                 
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~d~~~-----------------  212 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------EDPEV-----------------  212 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------hhHHH-----------------
Confidence            3579999999999999999999999999999998765210                  00000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s  214 (300)
                                           ...+.+.|.+  . +++++++++++++.+++..+.+...++  +++.+|.||.|+|...
T Consensus       213 ---------------------~~~~~~~l~~--~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p  268 (460)
T PRK06292        213 ---------------------SKQAQKILSK--E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRP  268 (460)
T ss_pred             ---------------------HHHHHHHHhh--c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence                                 0122222222  2 789999999999876542222333333  4699999999999865


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       269 ~~  270 (460)
T PRK06292        269 NT  270 (460)
T ss_pred             CC
Confidence            44

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.54  E-value=1e-06  Score=82.74  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                  
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~------------------d~ei------------------  355 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLL------------------DADV------------------  355 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccC------------------CHHH------------------
Confidence            4689999999999999999999999999999988652110                  0000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCc-eEEEEEcC-------C--------cEE
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG-VTILELVN-------G--------TRI  201 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~-~~~v~~~~-------g--------~~~  201 (300)
                                          ...+.+.+.+. .|++|+.++.|++++..++. .+.+.+.+       +        +++
T Consensus       356 --------------------s~~l~~~ll~~-~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i  414 (659)
T PTZ00153        356 --------------------AKYFERVFLKS-KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKET  414 (659)
T ss_pred             --------------------HHHHHHHHhhc-CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEE
Confidence                                11222222221 38999999999999876543 13344321       1        269


Q ss_pred             EcCEEEEcCCCChHh
Q 022277          202 YANIVIGCDGIRSPI  216 (300)
Q Consensus       202 ~ad~vV~A~G~~s~~  216 (300)
                      ++|.|++|+|.....
T Consensus       415 ~aD~VlvAtGr~Pnt  429 (659)
T PTZ00153        415 YVDSCLVATGRKPNT  429 (659)
T ss_pred             EcCEEEEEECcccCC
Confidence            999999999987643

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.53  E-value=4.1e-07  Score=80.00  Aligned_cols=145  Identities=15%  Similarity=0.184  Sum_probs=75.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CC-cEEEEecCCCcCCCCceeeEchhHHHHHH-----HcC-----CcHHHHhcccc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GI-GSLVIEQADSLRTGGTSLTLFKNGWSVLD-----ALG-----VGSDLRSQFLE  125 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~-----~~g-----~~~~~~~~~~~  125 (300)
                      ++|+|||||++|+.+|.+|.+.  .- .|.|+|+.+..+   .++.++...-..+-     .+.     +.+++.+....
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G---~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~   78 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG---QGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQK   78 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC---CCccCCCCCchhhhccccccccccCCCCchHHHHHHHh
Confidence            6899999999999999999885  22 399999998863   33333222110000     000     11111111000


Q ss_pred             ccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHH-------hcCCCCeE-EeCCeEEEEEEcC-CceEEEEEc
Q 022277          126 IKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLA-------NQLPPESV-QFSSELAKIETSG-NGVTILELV  196 (300)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~-------~~~~g~~i-~~~~~v~~i~~~~-~~~~~v~~~  196 (300)
                               ...   ...-........-....|..+-++|.       +..+...+ +..++++++.+.+ .+.+.+...
T Consensus        79 ---------~~~---~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~  146 (474)
T COG4529          79 ---------QLQ---RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTA  146 (474)
T ss_pred             ---------ccc---ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecC
Confidence                     000   00000000011111233333333332       22222223 3467777777663 345668888


Q ss_pred             CCcEEEcCEEEEcCCCChHhhh
Q 022277          197 NGTRIYANIVIGCDGIRSPIAK  218 (300)
Q Consensus       197 ~g~~~~ad~vV~A~G~~s~~r~  218 (300)
                      +|....||.+|+|+|..-+...
T Consensus       147 ~g~~~~ad~~Vlatgh~~~~~~  168 (474)
T COG4529         147 DGPSEIADIIVLATGHSAPPAD  168 (474)
T ss_pred             CCCeeeeeEEEEeccCCCCCcc
Confidence            9988999999999997655443

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.51  E-value=1e-06  Score=80.47  Aligned_cols=33  Identities=24%  Similarity=0.517  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ++||+|||||++|+.+|+.+++.|.+|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            489999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07208 hypothetical protein; Provisional

Probab=98.51  E-value=1.9e-07  Score=85.48  Aligned_cols=39  Identities=36%  Similarity=0.520  Sum_probs=36.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      +...||+|||||++||++|+.|+++|++|+|+|+.+.++
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            356899999999999999999999999999999998874

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.50  E-value=7.1e-07  Score=79.04  Aligned_cols=55  Identities=25%  Similarity=0.422  Sum_probs=42.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-CCCceeeEchhHHHHH
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVL  110 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-~~g~~~~~~~~~~~~l  110 (300)
                      ...+||+|||||.+|.-+|+-.+-+|++|.++|+.+... ...++..+-+.+.+.|
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYL  120 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYL  120 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHH
Confidence            356999999999999999999999999999999998653 2333444444444333

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.50  E-value=2.3e-07  Score=87.70  Aligned_cols=37  Identities=30%  Similarity=0.474  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4579999999999999999999999999999998876

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=98.47  E-value=6.5e-07  Score=82.23  Aligned_cols=126  Identities=27%  Similarity=0.332  Sum_probs=91.8

Q ss_pred             CCCCCCccceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchh
Q 022277           26 PQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKN  105 (300)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~  105 (300)
                      |.....-.+..|+.++..++.+...      ....-+|||||.-||.+|..|...|++|+|++-.+.+..          
T Consensus       119 PG~~~~~v~~~R~i~D~~am~~~ar------~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMe----------  182 (793)
T COG1251         119 PGSDLPGVFVYRTIDDVEAMLDCAR------NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME----------  182 (793)
T ss_pred             CCCCCCCeeEEecHHHHHHHHHHHh------ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHH----------
Confidence            3444455678899999998887744      445589999999999999999999999999998775410          


Q ss_pred             HHHHHHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEE
Q 022277          106 GWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIET  185 (300)
Q Consensus       106 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~  185 (300)
                                 .++..                                   .-..+++...+.. |+++++++..+.+..
T Consensus       183 -----------rQLD~-----------------------------------~ag~lL~~~le~~-Gi~~~l~~~t~ei~g  215 (793)
T COG1251         183 -----------RQLDR-----------------------------------TAGRLLRRKLEDL-GIKVLLEKNTEEIVG  215 (793)
T ss_pred             -----------Hhhhh-----------------------------------HHHHHHHHHHHhh-cceeecccchhhhhc
Confidence                       00000                                   0012222222222 889999888877766


Q ss_pred             cCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          186 SGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       186 ~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                       ++.+.+++++||..+.||.||.|+|....
T Consensus       216 -~~~~~~vr~~DG~~i~ad~VV~a~GIrPn  244 (793)
T COG1251         216 -EDKVEGVRFADGTEIPADLVVMAVGIRPN  244 (793)
T ss_pred             -CcceeeEeecCCCcccceeEEEecccccc
Confidence             55667899999999999999999997653

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=2.1e-07  Score=82.60  Aligned_cols=37  Identities=38%  Similarity=0.516  Sum_probs=34.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT   95 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~   95 (300)
                      .+|+|+|||+|||+||+.|+++|++|+|+|+++.++.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            4799999999999999999999999999999998853

>TIGR03452 mycothione_red mycothione reductase

Probab=98.45  E-value=2.5e-06  Score=77.41  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=27.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ++||+|||+|++|..+|.  +..|.+|.|+|+..
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence            589999999999998864  45799999999854

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.45  E-value=9.1e-07  Score=73.41  Aligned_cols=165  Identities=18%  Similarity=0.209  Sum_probs=95.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCC--C-------CceeeEchhHHHH-------------HHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRT--G-------GTSLTLFKNGWSV-------------LDA  112 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~--~-------g~~~~~~~~~~~~-------------l~~  112 (300)
                      ..+|.||||||++|++.|.+|.-+  +++|.|+|+...+..  .       ..++.+.|.+++.             +++
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e  126 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE  126 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence            579999999999999999999877  999999999886531  1       2244555554311             111


Q ss_pred             cCCc-------------------HHHHhcc--ccccceEEEcCCCceEEEecCC----CCCCCcceeeecHHHHHHHHHh
Q 022277          113 LGVG-------------------SDLRSQF--LEIKGMAVKSEDGRELRSFGFK----DEDASQEVRAVERRILLETLAN  167 (300)
Q Consensus       113 ~g~~-------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~l~~~l~~  167 (300)
                      -++.                   +.+...+  ....++++...  ..+..+...    .....+....++...+...+.+
T Consensus       127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg--~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~e  204 (453)
T KOG2665|consen  127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEG--SEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGE  204 (453)
T ss_pred             cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeecc--chhhhcChhhhhhhhhcCCCcceeehHHHHHHHHH
Confidence            1111                   1111110  01122222221  000000000    0011233345666666666666


Q ss_pred             cC--CCCeEEeCCeEEEEEEcCCc----eEEEEEcCCcEEEcCEEEEcCCCChHhhhhc-CCC
Q 022277          168 QL--PPESVQFSSELAKIETSGNG----VTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS  223 (300)
Q Consensus       168 ~~--~g~~i~~~~~v~~i~~~~~~----~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~-g~~  223 (300)
                      .+  .+..+..+-++.++.+..+.    .+.|.-..+++++++.+|-|+|..|.....+ |.+
T Consensus       205 dF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~  267 (453)
T KOG2665|consen  205 DFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE  267 (453)
T ss_pred             HHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence            55  37789999999999877652    2224444467899999999999988655444 654

>PRK07846 mycothione reductase; Reviewed

Probab=98.45  E-value=1.3e-06  Score=79.08  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ++|++|||||++|..+|..  ..|.+|+|+|+..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            3899999999999988865  4699999999854

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.45  E-value=5.4e-07  Score=85.09  Aligned_cols=37  Identities=35%  Similarity=0.569  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999999876

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.43  E-value=6.9e-07  Score=81.59  Aligned_cols=37  Identities=38%  Similarity=0.534  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            3479999999999999999999999999999998865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.42  E-value=3.4e-07  Score=84.08  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=34.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .||+|||||++||++|..|+++|++|+|+|+++.++
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            589999999999999999999999999999998774

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.40  E-value=3.5e-06  Score=77.73  Aligned_cols=94  Identities=21%  Similarity=0.345  Sum_probs=70.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||..|+.+|..|+..|.+|+|+++.+.+...                                         
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~-----------------------------------------  389 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKAD-----------------------------------------  389 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccccc-----------------------------------------
Confidence            468999999999999999999999999999988754100                                         


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGI  212 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~  212 (300)
                                           ..+.+.+. ..+|+++++++.+++++.+++.+..+.+.+   |  +++.+|.|+.|.|.
T Consensus       390 ---------------------~~l~~~l~-~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~  447 (517)
T PRK15317        390 ---------------------QVLQDKLR-SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL  447 (517)
T ss_pred             ---------------------HHHHHHHh-cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence                                 01222222 224899999999999987655555566543   3  25999999999997


Q ss_pred             Ch
Q 022277          213 RS  214 (300)
Q Consensus       213 ~s  214 (300)
                      ..
T Consensus       448 ~p  449 (517)
T PRK15317        448 VP  449 (517)
T ss_pred             cc
Confidence            65

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.39  E-value=4.9e-06  Score=71.14  Aligned_cols=94  Identities=20%  Similarity=0.345  Sum_probs=68.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+....                                          
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------------------------------------  178 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------------------------------------  178 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------------------------------------------
Confidence            46899999999999999999999999999998763310                                          


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEEcCEEEEcCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGI  212 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~  212 (300)
                                          ...+.+.+.+ ..++++++++.+++++.++ ++..+.+.   ++  .++.+|.||.|+|.
T Consensus       179 --------------------~~~~~~~l~~-~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  236 (300)
T TIGR01292       179 --------------------EKILLDRLRK-NPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIAIGH  236 (300)
T ss_pred             --------------------CHHHHHHHHh-CCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence                                0122233332 2388999999999998654 43344442   23  47999999999997


Q ss_pred             ChH
Q 022277          213 RSP  215 (300)
Q Consensus       213 ~s~  215 (300)
                      ...
T Consensus       237 ~~~  239 (300)
T TIGR01292       237 EPN  239 (300)
T ss_pred             CCC
Confidence            653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.37  E-value=3.2e-06  Score=72.03  Aligned_cols=42  Identities=33%  Similarity=0.680  Sum_probs=37.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCcee
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSL  100 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~  100 (300)
                      ..+||+||||||.|-.+|+..++.|++..++|++...  +|..+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L--GGTcL   79 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL--GGTCL   79 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc--Cceee
Confidence            6799999999999999999999999999999999877  44433

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.37  E-value=1.1e-06  Score=82.01  Aligned_cols=37  Identities=30%  Similarity=0.567  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4579999999999999999999999999999999876

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.35  E-value=6.6e-06  Score=74.57  Aligned_cols=35  Identities=20%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|+|||||..|+.+|..|.+.|.+|+++++...
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            46899999999999999999999999999998763

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.32  E-value=1.2e-06  Score=79.84  Aligned_cols=60  Identities=30%  Similarity=0.491  Sum_probs=45.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC--------Ccee--------eEchhHHHHHHHcCCcHHH
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--------GTSL--------TLFKNGWSVLDALGVGSDL  119 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~--------g~~~--------~~~~~~~~~l~~~g~~~~~  119 (300)
                      +|+|||||++||++|+.|+++|++|+|+|+++.++..        |..+        ...++..+.++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            5899999999999999999999999999999877421        1111        1134567788888876554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK13984 putative oxidoreductase; Provisional

Probab=98.31  E-value=1.2e-06  Score=82.42  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=34.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....+|+|||+|++|+++|..|+++|++|+|+|+.+.+
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            34678999999999999999999999999999998865

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.31  E-value=7e-06  Score=72.43  Aligned_cols=93  Identities=27%  Similarity=0.410  Sum_probs=64.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH----cC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEE
Q 022277           58 KEDIVIVGAGIAGLATAVSLQR----LG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAV  131 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~----~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  131 (300)
                      ..+|+|||||++|+.+|..|++    +|  .+|+|+ ..+.+...                  +                
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~------------------~----------------  189 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG------------------F----------------  189 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc------------------C----------------
Confidence            4589999999999999999985    35  478888 33322100                  0                


Q ss_pred             EcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          132 KSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                                        +.    -.+..+.+.|.+.  |+++++++++++++.  +.   |.+.+|+++.+|.||.|+|
T Consensus       190 ------------------~~----~~~~~~~~~l~~~--gV~v~~~~~v~~i~~--~~---v~~~~g~~i~~D~vi~a~G  240 (364)
T TIGR03169       190 ------------------PA----KVRRLVLRLLARR--GIEVHEGAPVTRGPD--GA---LILADGRTLPADAILWATG  240 (364)
T ss_pred             ------------------CH----HHHHHHHHHHHHC--CCEEEeCCeeEEEcC--Ce---EEeCCCCEEecCEEEEccC
Confidence                              00    0012333444443  899999999998853  22   6778888999999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       241 ~~p  243 (364)
T TIGR03169       241 ARA  243 (364)
T ss_pred             CCh
Confidence            765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.30  E-value=1.1e-06  Score=77.10  Aligned_cols=36  Identities=36%  Similarity=0.566  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      +||+|||||++|+++|..|++.|.+|+|+|+++.++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            699999999999999999999999999999987653

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.29  E-value=9.1e-06  Score=73.92  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||||..|+.+|..|.+.|. +|+++++.+
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            45799999999999999999999998 899999865

>PLN02487 zeta-carotene desaturase

Probab=98.28  E-value=1.9e-06  Score=79.64  Aligned_cols=63  Identities=27%  Similarity=0.459  Sum_probs=49.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--------CCcee--------eEchhHHHHHHHcCCcHHHH
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--------GGTSL--------TLFKNGWSVLDALGVGSDLR  120 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--------~g~~~--------~~~~~~~~~l~~~g~~~~~~  120 (300)
                      ..+|+|||||++||++|+.|+++|++|+|+|+.+.++.        .|..+        +..++..++++++|+.+.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~  153 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL  153 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence            35999999999999999999999999999999987742        12111        12356788899999876543

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=9.3e-06  Score=68.17  Aligned_cols=46  Identities=28%  Similarity=0.407  Sum_probs=37.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeE
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL  102 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~  102 (300)
                      +..+|.+|||||-+||+||.+.+..|.+|.++|--. +.+.|..+++
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~-PtP~GtsWGl   62 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK-PTPQGTSWGL   62 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc-cCCCCCcccc
Confidence            367999999999999999999999999999999643 3335555544

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.24  E-value=1.4e-06  Score=76.32  Aligned_cols=38  Identities=24%  Similarity=0.616  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+++|||||++|+++|+.|++.|++|.++||.+.++
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            35789999999999999999999999999999999874

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.21  E-value=7.7e-06  Score=71.14  Aligned_cols=134  Identities=16%  Similarity=0.200  Sum_probs=69.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCce----eeEchhHHHHHHHcCCcHHHHhccccccce
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTS----LTLFKNGWSVLDALGVGSDLRSQFLEIKGM  129 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  129 (300)
                      ....+|+|||||..+..++..|.+.+-  +|+++=|+....+...+    ..+.|...+.+-.+.  ++.+......   
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~--~~~R~~~l~~---  262 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLP--DEERRELLRE---  262 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHHHH---
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCC--HHHHHHHHHH---
Confidence            357899999999999999999999875  89999998865432211    122333333332221  1111111000   


Q ss_pred             EEEcCCCceEEEecCCCCCCCcceeeecHHHH---HHHHHh-cC---CCCeEEeCCeEEEEEEcCCceEEEEEcCC----
Q 022277          130 AVKSEDGRELRSFGFKDEDASQEVRAVERRIL---LETLAN-QL---PPESVQFSSELAKIETSGNGVTILELVNG----  198 (300)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l---~~~l~~-~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g----  198 (300)
                                        .....+..++...+   .+.+.+ .+   ..+.++.+++|++++..+++.+.+.+.+.    
T Consensus       263 ------------------~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~  324 (341)
T PF13434_consen  263 ------------------QRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGE  324 (341)
T ss_dssp             ------------------TGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--
T ss_pred             ------------------hHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCC
Confidence                              00001111222211   111111 11   24789999999999998863466777652    


Q ss_pred             -cEEEcCEEEEcCCC
Q 022277          199 -TRIYANIVIGCDGI  212 (300)
Q Consensus       199 -~~~~ad~vV~A~G~  212 (300)
                       ..+++|.||+|||-
T Consensus       325 ~~~~~~D~VilATGy  339 (341)
T PF13434_consen  325 EETLEVDAVILATGY  339 (341)
T ss_dssp             EEEEEESEEEE---E
T ss_pred             eEEEecCEEEEcCCc
Confidence             37899999999994

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.20  E-value=1.5e-06  Score=77.97  Aligned_cols=36  Identities=36%  Similarity=0.483  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence            379999999999999999999999999999999976

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.20  E-value=1.6e-05  Score=69.75  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~   91 (300)
                      ..+|+|||+|..|+.+|..|.+.|.+ |+|+++..
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            36899999999999999999999997 99999765

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.4e-05  Score=63.22  Aligned_cols=114  Identities=20%  Similarity=0.216  Sum_probs=72.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--CCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ...+|+|||.||++-.+|+.++++.++-+++|-.-.-  .++|.-.. .                               
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT-T-------------------------------   54 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT-T-------------------------------   54 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee-e-------------------------------
Confidence            3458999999999999999999999999999965422  12221000 0                               


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                             .+.  +..+....-+.-.+|++.+.++.  .|.+|... .|.++.....- ..+.++. +.+.||.||+|+|+
T Consensus        55 -------T~v--eNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskp-F~l~td~-~~v~~~avI~atGA  122 (322)
T KOG0404|consen   55 -------TDV--ENFPGFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKP-FKLWTDA-RPVTADAVILATGA  122 (322)
T ss_pred             -------ecc--ccCCCCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCC-eEEEecC-CceeeeeEEEeccc
Confidence                   000  00011111244457777777665  26666543 46777666554 4355544 46999999999997


Q ss_pred             Ch
Q 022277          213 RS  214 (300)
Q Consensus       213 ~s  214 (300)
                      ..
T Consensus       123 sA  124 (322)
T KOG0404|consen  123 SA  124 (322)
T ss_pred             ce
Confidence            54

>PRK12831 putative oxidoreductase; Provisional

Probab=98.17  E-value=3e-05  Score=70.58  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||||.+|+.+|..|.+.|.+|+++++..
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            35799999999999999999999999999999865

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.14  E-value=3.6e-06  Score=70.16  Aligned_cols=37  Identities=32%  Similarity=0.513  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .+|++|||+|++|+.+|..|+++|.+|+|+||++.++
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            3799999999999999999999999999999999885

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=98.13  E-value=1.2e-06  Score=72.73  Aligned_cols=109  Identities=19%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc-CC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRL-GI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~-G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      ..++.|+|||||.+|+.+|..+.++ |. +|.|+|.....-... ++.+...++..|+.-                    
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQP-gfTLvGgGl~~l~~s--------------------   95 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQP-GFTLVGGGLKSLDSS--------------------   95 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCc-ceEEeccchhhhhhc--------------------
Confidence            3689999999999999999999876 55 899999876431100 111111111111100                    


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                                  .+.+++.++........+|+++..+.+.   |.+.+|++|.+|++|+|.|..
T Consensus        96 ----------------------------rr~~a~liP~~a~wi~ekv~~f~P~~N~---v~t~gg~eIsYdylviA~Giq  144 (446)
T KOG3851|consen   96 ----------------------------RRKQASLIPKGATWIKEKVKEFNPDKNT---VVTRGGEEISYDYLVIAMGIQ  144 (446)
T ss_pred             ----------------------------cCcccccccCCcHHHHHHHHhcCCCcCe---EEccCCcEEeeeeEeeeeece
Confidence                                        0001111121122223567778777776   789999999999999999987


Q ss_pred             hHh
Q 022277          214 SPI  216 (300)
Q Consensus       214 s~~  216 (300)
                      -..
T Consensus       145 l~y  147 (446)
T KOG3851|consen  145 LDY  147 (446)
T ss_pred             ecc
Confidence            654

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.13  E-value=1.3e-05  Score=69.72  Aligned_cols=61  Identities=13%  Similarity=0.149  Sum_probs=50.3

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                      .+...+++.+  .|.+|.++..|.+|..+++.+.+|.++||+.+.++.||--++.|-..-+.+
T Consensus       265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence            4445555444  388999999999999998888899999999999999998888888776666

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.11  E-value=4e-06  Score=80.10  Aligned_cols=37  Identities=35%  Similarity=0.539  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||.||+||++|-+|.|.|+.|+|+||.+++
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            3579999999999999999999999999999999987

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.11  E-value=2.5e-06  Score=72.94  Aligned_cols=34  Identities=35%  Similarity=0.497  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~   92 (300)
                      ||+||||+|++|+.+|..|++.| .+|+|+|+.+.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            69999999999999999999997 69999999875

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.10  E-value=0.00011  Score=67.86  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEEcCEEEEcCCCChH-hhhhcCCCCC
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGIRSP-IAKWIGFSEP  225 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~~s~-~r~~~g~~~~  225 (300)
                      ..++...+...+.+.+  .|++|+.+++|+++..+++++++|.+.   +|  ..+.|+.||+|+|.|+. +.+.+|...+
T Consensus       123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~  202 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIR  202 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCCc
Confidence            3578888888887766  589999999999999887776666653   34  26899999999999984 5555576544


Q ss_pred             c
Q 022277          226 K  226 (300)
Q Consensus       226 ~  226 (300)
                      .
T Consensus       203 i  203 (516)
T TIGR03377       203 M  203 (516)
T ss_pred             e
Confidence            3

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02529 lysine-specific histone demethylase 1

Probab=98.10  E-value=5.4e-06  Score=78.49  Aligned_cols=38  Identities=37%  Similarity=0.594  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+|+|||||++||++|..|+++|++|+|+|+++.++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G  196 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG  196 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence            46899999999999999999999999999999988754

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.07  E-value=4.4e-06  Score=80.32  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....+|+||||||||+++|+.|++.|++|+|+|+.+
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            356899999999999999999999999999999863

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.06  E-value=6.2e-06  Score=78.60  Aligned_cols=38  Identities=34%  Similarity=0.566  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+|+|||||++|+++|+.|++.|++|+|+|++..++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            45899999999999999999999999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.05  E-value=5.6e-05  Score=70.40  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||||.+|+.+|..|++.|.+|+++++.+.
T Consensus       142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            346899999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.02  E-value=8.5e-05  Score=67.85  Aligned_cols=106  Identities=14%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ...+|+|||||..|+.+|..+.+.|. +|++++....+.....                  .                  
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~------------------~------------------  323 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN------------------K------------------  323 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccc------------------c------------------
Confidence            34689999999999999999999986 7887775553310000                  0                  


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc-----CC---------cEE
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV-----NG---------TRI  201 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~-----~g---------~~~  201 (300)
                                .. ....   .......+.+.+.  |+++++++.++++..+++.+..|.+.     +|         .++
T Consensus       324 ----------~~-~~~~---~~~~~~~~~~~~~--GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i  387 (471)
T PRK12810        324 ----------NN-PWPY---WPMKLEVSNAHEE--GVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVL  387 (471)
T ss_pred             ----------cc-CCcc---cchHHHHHHHHHc--CCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEE
Confidence                      00 0000   0000012222222  89999999999997555555444432     22         479


Q ss_pred             EcCEEEEcCCCCh
Q 022277          202 YANIVIGCDGIRS  214 (300)
Q Consensus       202 ~ad~vV~A~G~~s  214 (300)
                      .+|.||.|.|...
T Consensus       388 ~~D~VI~A~G~~p  400 (471)
T PRK12810        388 PADLVLLAMGFTG  400 (471)
T ss_pred             ECCEEEECcCcCC
Confidence            9999999999654

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.99  E-value=9e-06  Score=68.05  Aligned_cols=43  Identities=19%  Similarity=0.086  Sum_probs=36.4

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEEcCEEEEcCCCC
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIR  213 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~A~G~~  213 (300)
                      |+.++.+.+|.+.+...+++..|-+.++.  .+++|..|.|+|..
T Consensus       272 Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsf  316 (421)
T COG3075         272 GGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSF  316 (421)
T ss_pred             CceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccc
Confidence            67788899999999998888888887764  57899999999964

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=97.97  E-value=7.6e-05  Score=61.85  Aligned_cols=77  Identities=18%  Similarity=0.110  Sum_probs=66.0

Q ss_pred             cCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCCCC
Q 022277          203 ANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG  281 (300)
Q Consensus       203 ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  281 (300)
                      |.++|+|||..|..|+.+....+  ...+.|.|..-.+...+.+...++++++...+++|+++.++++..+-+..+..+
T Consensus         2 A~LtivaDG~~S~fRk~l~~~~~--~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P   78 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSDNKP--QVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP   78 (276)
T ss_pred             CCEEEEecCCchHHHHhhcCCCC--ceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC
Confidence            78899999999999999984444  446678888888888888999999999999999999999999999999877433

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.96  E-value=7e-05  Score=65.65  Aligned_cols=74  Identities=20%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             cHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC-cEEEcCEEEEcCCCCh-----------HhhhhcCC
Q 022277          157 ERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIRS-----------PIAKWIGF  222 (300)
Q Consensus       157 ~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~s-----------~~r~~~g~  222 (300)
                      .-..+.+.|...+  .|++|+++++|++|  ++++ +.+.+.++ ..++||.||+|+|..|           .+.+.+|+
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh  160 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV  160 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence            3446667776666  48999999999999  2333 55776543 4699999999999876           46677776


Q ss_pred             CC-CccccceEE
Q 022277          223 SE-PKYVGHCAY  233 (300)
Q Consensus       223 ~~-~~~~~~~~~  233 (300)
                      .. |.++..+.+
T Consensus       161 ~i~~~~PaL~pl  172 (376)
T TIGR03862       161 SVAPFAPANCGF  172 (376)
T ss_pred             cccCCcCeeceE
Confidence            52 333444444

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.96  E-value=0.00034  Score=60.82  Aligned_cols=62  Identities=26%  Similarity=0.300  Sum_probs=52.5

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                      ..++...+...|.+.+  .|++++.+++|++++.++++++.|.+.+| ++.||.||+|+|+++..
T Consensus       132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE  195 (337)
T ss_pred             ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence            3577888888888776  58999999999999987777667888777 79999999999999854

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.96  E-value=1.1e-05  Score=72.04  Aligned_cols=34  Identities=26%  Similarity=0.569  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ++||+|||+|++|+++|+.|++.|.+|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999999999999874

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.94  E-value=0.00011  Score=71.06  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~   91 (300)
                      ..+|+|||||..|+.+|..+.+.|.+ |+|+++.+
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            46899999999999999999999997 99999875

>PRK02106 choline dehydrogenase; Validated

Probab=97.94  E-value=1.1e-05  Score=75.22  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~~~   91 (300)
                      ..+|+||||||.+|+.+|..|++ .|++|+|||+.+
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            56899999999999999999999 799999999995

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.89  E-value=2.6e-05  Score=69.97  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=37.4

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhh
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIA  217 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r  217 (300)
                      +.+|+++++|++|+.+++++ .|.+.+|++++||.||+|.......+
T Consensus       223 g~~i~l~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  223 GGEIRLNTPVTRIEREDGGV-TVTTEDGETIEADAVISAVPPSVLKN  268 (450)
T ss_dssp             GGGEESSEEEEEEEEESSEE-EEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred             CceeecCCcceecccccccc-ccccccceEEecceeeecCchhhhhh
Confidence            46899999999999999875 49999999999999999998655443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.88  E-value=1.7e-05  Score=72.74  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=34.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      +||+|||+|++|+.+|+.|++.|++|+|||+....+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            699999999999999999999999999999998764

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN03000 amine oxidase

Probab=97.87  E-value=3.3e-05  Score=73.99  Aligned_cols=38  Identities=42%  Similarity=0.618  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+|+|||||++||.+|..|.+.|++|+|+|+++.++
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            46899999999999999999999999999999998764

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.81  E-value=2.6e-05  Score=67.59  Aligned_cols=65  Identities=25%  Similarity=0.394  Sum_probs=46.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc--EEEEecCCCcCC--------CCceeeEc-----------hhHHHHHHHcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG--SLVIEQADSLRT--------GGTSLTLF-----------KNGWSVLDALGV  115 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~--V~viE~~~~~~~--------~g~~~~~~-----------~~~~~~l~~~g~  115 (300)
                      ...+|+|||||++||++||+|++++.+  |+|+|+.++.+.        ++.-+.-.           ...+..+.++|+
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl   89 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL   89 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence            457999999999999999999999875  566999987642        11111111           234677788888


Q ss_pred             cHHHHh
Q 022277          116 GSDLRS  121 (300)
Q Consensus       116 ~~~~~~  121 (300)
                      .+++..
T Consensus        90 ~~e~~~   95 (491)
T KOG1276|consen   90 EDELQP   95 (491)
T ss_pred             cceeee
Confidence            766543

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.81  E-value=7.7e-05  Score=64.52  Aligned_cols=121  Identities=21%  Similarity=0.331  Sum_probs=79.0

Q ss_pred             eeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHc----CCcE-EEEecCCCcCCCCceeeEchhHHHHH
Q 022277           36 TRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRL----GIGS-LVIEQADSLRTGGTSLTLFKNGWSVL  110 (300)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~----G~~V-~viE~~~~~~~~g~~~~~~~~~~~~l  110 (300)
                      ++...+-+.+...++      ....|-|||+|..|..+|+.|.+.    |.+| .|+|.....                 
T Consensus       331 fr~p~DF~rlek~~a------ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm-----------------  387 (659)
T KOG1346|consen  331 FRYPADFKRLEKGLA------EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM-----------------  387 (659)
T ss_pred             EecchHHHHHHHhhh------hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh-----------------
Confidence            345555555555544      568999999999999999999874    4444 233322211                 


Q ss_pred             HHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC
Q 022277          111 DALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN  188 (300)
Q Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~  188 (300)
                                                                 ..|-+.-|.++-.++.  .|+.++.+..|.++.....
T Consensus       388 -------------------------------------------~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~  424 (659)
T KOG1346|consen  388 -------------------------------------------EKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK  424 (659)
T ss_pred             -------------------------------------------hhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc
Confidence                                                       0011112222222222  3899999999999988877


Q ss_pred             ceEEEEEcCCcEEEcCEEEEcCCCC--hHhhhhcCCC
Q 022277          189 GVTILELVNGTRIYANIVIGCDGIR--SPIAKWIGFS  223 (300)
Q Consensus       189 ~~~~v~~~~g~~~~ad~vV~A~G~~--s~~r~~~g~~  223 (300)
                      ..+ +.++||.+++.|.||+|.|-.  +.+.+.-|+.
T Consensus       425 nl~-lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe  460 (659)
T KOG1346|consen  425 NLV-LKLSDGSELRTDLVVVAVGEEPNSELAEASGLE  460 (659)
T ss_pred             ceE-EEecCCCeeeeeeEEEEecCCCchhhcccccce
Confidence            644 899999999999999999964  4444433433

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.79  E-value=0.00025  Score=70.38  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+|+|||+|+.|+.+|..|++.|. .|+|+|+.+...                                          
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~------------------------------------------  354 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS------------------------------------------  354 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh------------------------------------------
Confidence            4799999999999999999999996 589998765320                                          


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc----CCcEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV----NGTRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~----~g~~~~ad~vV~A~G~  212 (300)
                                            ..+.+.|.+.  |++++.++.++.+..++ .+..|++.    +++++.||.|+++.|.
T Consensus       355 ----------------------~~l~~~L~~~--GV~i~~~~~v~~i~g~~-~v~~V~l~~~~g~~~~i~~D~V~va~G~  409 (985)
T TIGR01372       355 ----------------------PEARAEAREL--GIEVLTGHVVAATEGGK-RVSGVAVARNGGAGQRLEADALAVSGGW  409 (985)
T ss_pred             ----------------------HHHHHHHHHc--CCEEEcCCeEEEEecCC-cEEEEEEEecCCceEEEECCEEEEcCCc
Confidence                                  0122333322  88999999999987543 33334443    4467999999999997


Q ss_pred             ChH--hhhhcCC
Q 022277          213 RSP--IAKWIGF  222 (300)
Q Consensus       213 ~s~--~r~~~g~  222 (300)
                      ...  +.+.+|.
T Consensus       410 ~Pnt~L~~~lg~  421 (985)
T TIGR01372       410 TPVVHLFSQRGG  421 (985)
T ss_pred             CchhHHHHhcCC
Confidence            653  4444443

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.79  E-value=0.00018  Score=63.41  Aligned_cols=105  Identities=18%  Similarity=0.239  Sum_probs=68.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ...++|||||++|..|+..+...|.  +++++-+........                   ..+       .........
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr-------------------~~L-------s~~~~~~~~  127 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDR-------------------ARL-------SKFLLTVGE  127 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccc-------------------hhc-------ccceeeccc
Confidence            5789999999999999999999886  566665444321100                   000       000000000


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                      +..                 .   ...+.+.+.  ++++++++.|+.++..+..   |.+.+|+++.++.+|+|||..
T Consensus       128 ~~a-----------------~---r~~e~Yke~--gIe~~~~t~v~~~D~~~K~---l~~~~Ge~~kys~LilATGs~  180 (478)
T KOG1336|consen  128 GLA-----------------K---RTPEFYKEK--GIELILGTSVVKADLASKT---LVLGNGETLKYSKLIIATGSS  180 (478)
T ss_pred             ccc-----------------c---cChhhHhhc--CceEEEcceeEEeeccccE---EEeCCCceeecceEEEeecCc
Confidence            000                 0   001112222  8899999999999887765   889999999999999999983

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.77  E-value=0.00038  Score=63.46  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..+|+|||+|..|+.+|..+.+.|. +|+|+++.+.
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            4689999999999999999999996 7999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.75  E-value=0.00042  Score=65.96  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..+|+|||||..|+.+|..+.+.|. +|+++.+.+.
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~  503 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE  503 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence            4689999999999999999999997 6999988754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.75  E-value=8.5e-05  Score=67.38  Aligned_cols=35  Identities=14%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||+|..|+..|..|++.+.+|+++.|..
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            35689999999999999999999999999999865

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.75  E-value=0.00023  Score=61.65  Aligned_cols=150  Identities=23%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcCCCCce----eeEchhHHHHHHHcCCcHHHHhccccccceE
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLRTGGTS----LTLFKNGWSVLDALGVGSDLRSQFLEIKGMA  130 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~~~g~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  130 (300)
                      +...|++.||-||.-|++|..|...+ .++..+||.+.+......    ..++   ..+++++=-   +...-.+...+.
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQ---v~FlkDLVT---l~~PTs~ySFLN   76 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQ---VPFLKDLVT---LVDPTSPYSFLN   76 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCcccc---ccchhhhcc---ccCCCCchHHHH
Confidence            46799999999999999999999875 789999999987533221    1111   011111100   000000000111


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHH---HHHHhcCCCCeEEeCCeEEEEEEcC-CceEE--EEEcCCcEEEcC
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILL---ETLANQLPPESVQFSSELAKIETSG-NGVTI--LELVNGTRIYAN  204 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~---~~l~~~~~g~~i~~~~~v~~i~~~~-~~~~~--v~~~~g~~~~ad  204 (300)
                      .....++... +      .......+.|.++.   ++.+..+  -.++++++|++|...+ +....  +.+.++..++|+
T Consensus        77 YL~~h~RLy~-F------l~~e~f~i~R~Ey~dY~~Waa~~l--~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar  147 (436)
T COG3486          77 YLHEHGRLYE-F------LNYETFHIPRREYNDYCQWAASQL--PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRAR  147 (436)
T ss_pred             HHHHcchHhh-h------hhhhcccccHHHHHHHHHHHHhhC--CccccCCeeccccccCCcceeEEEEEcCCCcEEEee
Confidence            1111111100 0      01122335555554   4445554  3688899999774332 23333  677778899999


Q ss_pred             EEEEcCCCChHhhhhc
Q 022277          205 IVIGCDGIRSPIAKWI  220 (300)
Q Consensus       205 ~vV~A~G~~s~~r~~~  220 (300)
                      -||+.+|....+...+
T Consensus       148 ~lVlg~G~~P~IP~~f  163 (436)
T COG3486         148 NLVLGVGTQPYIPPCF  163 (436)
T ss_pred             eEEEccCCCcCCChHH
Confidence            9999999877654444

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.73  E-value=0.00022  Score=63.62  Aligned_cols=38  Identities=29%  Similarity=0.460  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..+||||+|-|+.-+.+|..|++.|.+|+.+|+++.-+
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG   40 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence            67999999999999999999999999999999998654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.71  E-value=0.00023  Score=65.23  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=34.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~   93 (300)
                      ...||.||||||-||+.+|..|++. ..+|+|+|+...+
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            3579999999999999999999997 6899999998765

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.70  E-value=0.0005  Score=65.34  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||||..|+.+|..+.+.|. +|+|+++..
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            45799999999999999999999997 599999776

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.67  E-value=0.00029  Score=62.98  Aligned_cols=94  Identities=17%  Similarity=0.135  Sum_probs=66.3

Q ss_pred             CCcEEEECCCHHHHHHH-HHHH----HcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEE
Q 022277           58 KEDIVIVGAGIAGLATA-VSLQ----RLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVK  132 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A-~~L~----~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  132 (300)
                      ..| +|++.|+.|+..+ ..++    +.|.+|++++..+...++                                    
T Consensus       216 ~~~-~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG------------------------------------  258 (422)
T PRK05329        216 DAE-AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG------------------------------------  258 (422)
T ss_pred             CCC-EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch------------------------------------
Confidence            345 6799999999998 5554    469999999988754211                                    


Q ss_pred             cCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEEcCEEEE
Q 022277          133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIG  208 (300)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~  208 (300)
                                                .++.+.|.+.+  .|++++.+++|++++.+++++..+...+|+  .+++|.||+
T Consensus       259 --------------------------~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVL  312 (422)
T PRK05329        259 --------------------------LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVL  312 (422)
T ss_pred             --------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEE
Confidence                                      02222332222  388999999999999877765544454553  589999999


Q ss_pred             cCCCCh
Q 022277          209 CDGIRS  214 (300)
Q Consensus       209 A~G~~s  214 (300)
                      |+|...
T Consensus       313 AtGrf~  318 (422)
T PRK05329        313 ATGSFF  318 (422)
T ss_pred             eCCCcc
Confidence            999753

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.66  E-value=4.7e-05  Score=70.48  Aligned_cols=36  Identities=39%  Similarity=0.520  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..++|+||||+|.+|+.+|..|+..|++|+|+|+..
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            367999999999999999999998899999999985

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.66  E-value=0.00054  Score=67.45  Aligned_cols=34  Identities=18%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|+|||||.+|+-+|..+.+.|.+|+++.+.+
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            4689999999999999999999999999998775

>PLN02976 amine oxidase

Probab=97.65  E-value=8.1e-05  Score=74.22  Aligned_cols=38  Identities=39%  Similarity=0.629  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+|+|||||++|+++|+.|++.|++|+|+|+.+.++
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG  729 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG  729 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence            45899999999999999999999999999999987663

>PRK13984 putative oxidoreductase; Provisional

Probab=97.63  E-value=0.00061  Score=64.34  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=26.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC------cEEEEe
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI------GSLVIE   88 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~------~V~viE   88 (300)
                      ..+|+|||||..|+.+|..|.+.|.      +|+++.
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            4799999999999999999998753      566653

>PLN02785 Protein HOTHEAD

Probab=97.63  E-value=7.2e-05  Score=69.80  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+||||||.+|+.+|..|++ +.+|+|||+...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            346999999999999999999999 699999999874

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.60  E-value=0.00021  Score=62.17  Aligned_cols=101  Identities=20%  Similarity=0.240  Sum_probs=67.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHH--------------cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccc
Q 022277           59 EDIVIVGAGIAGLATAVSLQR--------------LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL  124 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~--------------~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~  124 (300)
                      ..++||||||.|.+.|.+|+.              .-++|+++|..+.+.             ..++      .      
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-------------~mFd------k------  273 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-------------NMFD------K------  273 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-------------HHHH------H------
Confidence            579999999999999999974              246799999888541             1110      0      


Q ss_pred             cccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEE
Q 022277          125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT--RIY  202 (300)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~  202 (300)
                                                      ...++.+.+... .+++++.++.|..++.++   ..+.+.+|+  .|.
T Consensus       274 --------------------------------rl~~yae~~f~~-~~I~~~~~t~Vk~V~~~~---I~~~~~~g~~~~iP  317 (491)
T KOG2495|consen  274 --------------------------------RLVEYAENQFVR-DGIDLDTGTMVKKVTEKT---IHAKTKDGEIEEIP  317 (491)
T ss_pred             --------------------------------HHHHHHHHHhhh-ccceeecccEEEeecCcE---EEEEcCCCceeeec
Confidence                                            001222222222 288999999999886443   336666664  688


Q ss_pred             cCEEEEcCCCCh-Hhhhhc
Q 022277          203 ANIVIGCDGIRS-PIAKWI  220 (300)
Q Consensus       203 ad~vV~A~G~~s-~~r~~~  220 (300)
                      +-.+|.|+|... ++-+.+
T Consensus       318 YG~lVWatG~~~rp~~k~l  336 (491)
T KOG2495|consen  318 YGLLVWATGNGPRPVIKDL  336 (491)
T ss_pred             ceEEEecCCCCCchhhhhH
Confidence            999999999754 333333

>TIGR01810 betA choline dehydrogenase

Probab=97.59  E-value=5.8e-05  Score=70.04  Aligned_cols=46  Identities=33%  Similarity=0.330  Sum_probs=36.4

Q ss_pred             CCCeEEeCCeEEEEEEcCCceEEEEEcCC-c---EEEcCEEEEcCCC-ChH
Q 022277          170 PPESVQFSSELAKIETSGNGVTILELVNG-T---RIYANIVIGCDGI-RSP  215 (300)
Q Consensus       170 ~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~---~~~ad~vV~A~G~-~s~  215 (300)
                      ++++|+.+++|++|..+++.+++|++.++ .   .+.++.||+|.|+ +|+
T Consensus       207 ~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP  257 (532)
T TIGR01810       207 PNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSP  257 (532)
T ss_pred             CCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCH
Confidence            47999999999999988776777777543 2   3589999999998 453

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.59  E-value=0.00083  Score=65.77  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-C-CcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-G-IGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G-~~V~viE~~~   91 (300)
                      ...+|+|||||.+|+.+|..+.+. | .+|+++.+.+
T Consensus       667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            357999999999999999998887 5 3899999876

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.57  E-value=0.0025  Score=54.19  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=34.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|.+|||||-.|++.|...+..|.+|.|+|..-..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l   55 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL   55 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc
Confidence            35899999999999999999999999999999977544

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=8.7e-05  Score=62.28  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....|.|||||.||..+|++++++|++|.++|.++.-
T Consensus         2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            3467899999999999999999999999999998743

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.49  E-value=0.00029  Score=59.70  Aligned_cols=101  Identities=18%  Similarity=0.264  Sum_probs=74.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+.+++|||||.+++..|--++-.|-++.++=|.+.+..+-                   ++                 
T Consensus       187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~F-------------------D~-----------------  230 (478)
T KOG0405|consen  187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGF-------------------DE-----------------  230 (478)
T ss_pred             hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcch-------------------hH-----------------
Confidence            367899999999999999999999999999998887652110                   00                 


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                          .-+..+.+.|...  |++++.++.++.+....++...+....|.....|.|+.|.|+..
T Consensus       231 --------------------~i~~~v~~~~~~~--ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~P  287 (478)
T KOG0405|consen  231 --------------------MISDLVTEHLEGR--GINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKP  287 (478)
T ss_pred             --------------------HHHHHHHHHhhhc--ceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCC
Confidence                                1122333333333  89999999999999887764446666665455999999999753

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.46  E-value=0.00059  Score=62.57  Aligned_cols=34  Identities=32%  Similarity=0.574  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4589999999999999999999999999999765

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=97.44  E-value=9.6e-05  Score=60.06  Aligned_cols=33  Identities=33%  Similarity=0.574  Sum_probs=27.5

Q ss_pred             EEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCc
Q 022277           61 IVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSL   93 (300)
Q Consensus        61 VvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~   93 (300)
                      .+|||||+||.+||..|+..  ..+|+++-..+..
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            68999999999999999976  4578888776643

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.42  E-value=0.0022  Score=57.41  Aligned_cols=36  Identities=42%  Similarity=0.483  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL----GIGSLVIEQADSLR   94 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~----G~~V~viE~~~~~~   94 (300)
                      .++=|||+|+|+|++|.+|-|.    |-+|+|+|+.+.++
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G   42 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG   42 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence            5677999999999999999885    55899999988654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.35  E-value=0.0025  Score=63.43  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~   91 (300)
                      ...+|+|||||.+|+-+|..+.+.|.+ |+++.+..
T Consensus       570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~  605 (1006)
T PRK12775        570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS  605 (1006)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence            457999999999999999999999985 77777654

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.0031  Score=53.94  Aligned_cols=94  Identities=21%  Similarity=0.296  Sum_probs=70.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||-+.+.-|+.|++.+-+|+++-|.+.++..                                        
T Consensus       142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~----------------------------------------  181 (305)
T COG0492         142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAE----------------------------------------  181 (305)
T ss_pred             cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcC----------------------------------------
Confidence            3459999999999999999999999999999999866310                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC--C--cEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G~  212 (300)
                                            ..+.+.+.+. +++.+++++++.++.-++  +..|.+++  |  +.+.+|-|..+.|.
T Consensus       182 ----------------------~~~~~~l~~~-~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~  236 (305)
T COG0492         182 ----------------------EILVERLKKN-VKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGH  236 (305)
T ss_pred             ----------------------HHHHHHHHhc-CCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCC
Confidence                                  0222333222 267999999999998665  34466655  3  26889999999997


Q ss_pred             ChH
Q 022277          213 RSP  215 (300)
Q Consensus       213 ~s~  215 (300)
                      ...
T Consensus       237 ~p~  239 (305)
T COG0492         237 LPN  239 (305)
T ss_pred             CCc
Confidence            654

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.33  E-value=0.0035  Score=58.71  Aligned_cols=58  Identities=16%  Similarity=0.044  Sum_probs=43.8

Q ss_pred             HHHHHHHHhcC--CCCeEEeCCeEEEEEEc-CCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          159 RILLETLANQL--PPESVQFSSELAKIETS-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ..+...|.+.+  .|++++.++.++++..+ ++.+.+|..   .+|+  .+.|+.||+|||..+.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            35666666655  48999999999999875 456666654   3554  57899999999998754

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.27  E-value=0.003  Score=62.22  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~-~V~viE~~~   91 (300)
                      ...+|+|||||.+|+.+|..+.+. |. +|+++++..
T Consensus       665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            457999999999999999999886 86 799999876

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.00061  Score=58.44  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~   93 (300)
                      ....|.|||+||||..+|..|.++  ++.|.|+|+.+.+
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            345999999999999999999985  6899999999865

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.23  E-value=0.0017  Score=58.08  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                      ++.++.+++|+++......   |.+.+| .+.+|.+|+|+|+....
T Consensus        67 ~i~~~~~~~v~~id~~~~~---v~~~~g-~~~yd~LvlatGa~~~~  108 (415)
T COG0446          67 GIDVRTGTEVTSIDPENKV---VLLDDG-EIEYDYLVLATGARPRP  108 (415)
T ss_pred             CCEEeeCCEEEEecCCCCE---EEECCC-cccccEEEEcCCCcccC
Confidence            7799999999999877665   678888 79999999999987654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.17  E-value=0.003  Score=59.99  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..+|+|||+|..|+.+|..+.+.|. +|+++++.+.
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~  486 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE  486 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4789999999999999999999996 7999998754

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.17  E-value=0.0033  Score=58.59  Aligned_cols=112  Identities=15%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      ...+++|||-|++|..+.-++.+.   -++|+|+-..+.+...-  ..++              .+.+.....+.     
T Consensus         2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R--i~Ls--------------~vl~~~~~~ed-----   60 (793)
T COG1251           2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR--ILLS--------------SVLAGEKTAED-----   60 (793)
T ss_pred             CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc--eeec--------------cccCCCccHHH-----
Confidence            356899999999999999999883   45899988777652100  0000              00000000000     


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                          ..+....+.    ++ .+++++.+.+|+.+..++..   |.++.|..+.+|.+|+|+|..
T Consensus        61 --------------------i~l~~~dwy----~~-~~i~L~~~~~v~~idr~~k~---V~t~~g~~~~YDkLilATGS~  112 (793)
T COG1251          61 --------------------ISLNRNDWY----EE-NGITLYTGEKVIQIDRANKV---VTTDAGRTVSYDKLIIATGSY  112 (793)
T ss_pred             --------------------HhccchhhH----HH-cCcEEEcCCeeEEeccCcce---EEccCCcEeecceeEEecCcc
Confidence                                001111111    11 28999999999999877654   788999999999999999987


Q ss_pred             hHhh
Q 022277          214 SPIA  217 (300)
Q Consensus       214 s~~r  217 (300)
                      ..+-
T Consensus       113 pfi~  116 (793)
T COG1251         113 PFIL  116 (793)
T ss_pred             cccc
Confidence            7653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0024  Score=54.32  Aligned_cols=78  Identities=21%  Similarity=0.369  Sum_probs=57.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...||+|||||-.|+.+|+-|+--=-.|+++|=.+...                                          
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------------------------------------------  390 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------------------------------------------  390 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------------------------------------------
Confidence            45799999999999999999987656899999666431                                          


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN  197 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~  197 (300)
                                           ...+++.-+..+++++|..+..-+++.-+++++.++...+
T Consensus       391 ---------------------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d  430 (520)
T COG3634         391 ---------------------ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD  430 (520)
T ss_pred             ---------------------hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe
Confidence                                 0122222233446899999999999987777776666654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.10  E-value=0.0088  Score=54.91  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      ...+|+|||||..|+.+|..+.+.|. +|+++|+.+..
T Consensus       282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~  319 (485)
T TIGR01317       282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP  319 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence            34689999999999999888888875 79999987754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.10  E-value=0.0013  Score=60.68  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||+|.+|+-.|..|++...+|.+.-|...
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            457999999999999999999999889999888764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.05  E-value=0.0081  Score=56.28  Aligned_cols=36  Identities=19%  Similarity=0.384  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~   92 (300)
                      ...+|+|||||..|+.+|..+.+.| .+|+|+.+.+.
T Consensus       266 ~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~  302 (564)
T PRK12771        266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTR  302 (564)
T ss_pred             CCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCc
Confidence            3578999999999999999999988 57888887753

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.90  E-value=0.0012  Score=52.05  Aligned_cols=33  Identities=21%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .|.|||+|..|...|..+++.|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            489999999999999999999999999999774

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.85  E-value=0.0093  Score=52.24  Aligned_cols=39  Identities=15%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+.+|||+|.|.+|+++...|...-++|+|+..+..+
T Consensus        52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF   90 (491)
T KOG2495|consen   52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF   90 (491)
T ss_pred             CCCCceEEEEcCchHHHHHHHhccccccceEEeccccce
Confidence            446789999999999999999999999999999987753

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.84  E-value=0.0015  Score=50.25  Aligned_cols=32  Identities=28%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||||..|.++|..|+++|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999986

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.0036  Score=53.06  Aligned_cols=102  Identities=20%  Similarity=0.235  Sum_probs=70.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+-+-+|||||.++|.||-+|+-.|++|+|.=|+=-.+  |                 ...++                 
T Consensus       197 ~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr--G-----------------FDqdm-----------------  240 (503)
T KOG4716|consen  197 EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR--G-----------------FDQDM-----------------  240 (503)
T ss_pred             CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc--c-----------------ccHHH-----------------
Confidence            45689999999999999999999999999987764331  1                 11111                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G  211 (300)
                                           ...+.+.|.+.  |+.+.-.+..+.+++.+++...|..++   +  ..-++|.|+.|.|
T Consensus       241 ---------------------ae~v~~~m~~~--Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiG  297 (503)
T KOG4716|consen  241 ---------------------AELVAEHMEER--GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIG  297 (503)
T ss_pred             ---------------------HHHHHHHHHHh--CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhc
Confidence                                 01233334333  888888888888988877654454432   2  2457899999999


Q ss_pred             CChHhh
Q 022277          212 IRSPIA  217 (300)
Q Consensus       212 ~~s~~r  217 (300)
                      +.+..+
T Consensus       298 R~~~~~  303 (503)
T KOG4716|consen  298 RKALTD  303 (503)
T ss_pred             cccchh
Confidence            877553

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.70  E-value=0.0018  Score=51.17  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||.|..||.+|..|++.|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            689999999999999999999999999998874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.59  E-value=0.0031  Score=51.56  Aligned_cols=58  Identities=22%  Similarity=0.306  Sum_probs=42.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-------CCceeeEchhHHHHHHHcCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-------GGTSLTLFKNGWSVLDALGVG  116 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-------~g~~~~~~~~~~~~l~~~g~~  116 (300)
                      .+++|||+|-.|...|..|.+.|++|+++|+++....       ..............|++.|+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~   65 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID   65 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence            3689999999999999999999999999999875421       122222333345666666653

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.34  Score=42.40  Aligned_cols=39  Identities=21%  Similarity=0.323  Sum_probs=35.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT   95 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~   95 (300)
                      ..+||+|.|-|..=+..+..|+..|.+|+.+||++.-+.
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~   41 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGG   41 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCc
Confidence            459999999999999999999999999999999997643

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.56  E-value=0.0041  Score=47.40  Aligned_cols=31  Identities=29%  Similarity=0.473  Sum_probs=29.7

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        61 VvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      |+|+|+|..|+..|..|++.|.+|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999887

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.48  E-value=0.0049  Score=53.19  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||+|..|...|..|++.|++|+++.|..
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            44689999999999999999999999999999865

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.45  E-value=0.018  Score=50.21  Aligned_cols=51  Identities=25%  Similarity=0.423  Sum_probs=38.1

Q ss_pred             CCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCCChHhhhhc
Q 022277          170 PPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       170 ~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                      +.+.++-+++|..++..+++...+.+..   |  ++++.|.||+|||-+-.+...+
T Consensus       291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL  346 (436)
T COG3486         291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL  346 (436)
T ss_pred             CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence            4678889999999999887755565542   2  4789999999999775444334

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.44  E-value=0.0044  Score=52.67  Aligned_cols=35  Identities=34%  Similarity=0.530  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|.|||+|..|...|..|++.|++|+++|+++..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            47999999999999999999999999999998754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.42  E-value=0.004  Score=53.58  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            3699999999999999999999999999999864

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.023  Score=45.57  Aligned_cols=37  Identities=19%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...-.+|||||=+.+.=|.+|.+.+-+|.|+-|.+.+
T Consensus       156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f  192 (322)
T KOG0404|consen  156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF  192 (322)
T ss_pred             cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh
Confidence            3467889999999999999999999999999998865

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.38  E-value=0.0043  Score=51.65  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-------CcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-------IGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-------~~V~viE~~~~~   93 (300)
                      +..+|+|||+|.+||++|..+.+.+       ++|+|++-...+
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e   45 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE   45 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence            4579999999999999999888854       578888876654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.38  E-value=0.0043  Score=56.57  Aligned_cols=34  Identities=29%  Similarity=0.386  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      +|+|||.|.+|+++|..|.++|++|+++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999988654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.35  E-value=0.0058  Score=52.61  Aligned_cols=35  Identities=14%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...|.|||+|..|...|..++..|++|+++|..+.
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            35799999999999999999999999999998864

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.22  E-value=0.0062  Score=52.93  Aligned_cols=34  Identities=29%  Similarity=0.559  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||.|.+||.+|..|++.|++|+.+|....
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            3789999999999999999999999999998864

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.17  E-value=0.0073  Score=45.12  Aligned_cols=34  Identities=26%  Similarity=0.465  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999999 799999775

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.17  E-value=0.0079  Score=51.36  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45799999999999999999999999999998764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.17  E-value=0.0085  Score=51.48  Aligned_cols=33  Identities=30%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|+|||+|..|...|..|++.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            479999999999999999999999999999964

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.16  E-value=0.0082  Score=51.13  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5799999999999999999999999999998764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.14  E-value=0.0073  Score=51.46  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            3699999999999999999999999999998864

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.08  E-value=0.1  Score=47.84  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL   80 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~   80 (300)
                      ...+|+|||+|..|+.+|..|.+.
T Consensus       165 ~gk~VvVIGgGnvAlD~Ar~L~~~  188 (491)
T PLN02852        165 SSDTAVVLGQGNVALDCARILLRP  188 (491)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC
Confidence            346899999999999999999886

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.06  E-value=0.011  Score=47.38  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            46899999999999999999999999 699999873

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.00  E-value=0.013  Score=45.70  Aligned_cols=36  Identities=25%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+..|+|+|+|.+|..+|..|...|.+|+++|....
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~   54 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE   54 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence            468999999999999999999999999999998763

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.99  E-value=0.011  Score=53.69  Aligned_cols=35  Identities=31%  Similarity=0.674  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||+|.+|+++|..|++.|++|+++|+..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            35789999999999999999999999999999975

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.98  E-value=0.014  Score=44.87  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEe
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIE   88 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE   88 (300)
                      ...+|+|||||-+|..-+..|.+.|.+|+|+.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            45789999999999999999999999999995

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.94  E-value=0.0099  Score=47.58  Aligned_cols=35  Identities=20%  Similarity=0.438  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||+|.++..+|..|++.|.+|+++-|.+
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            45899999999999999999999999999999876

...

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.94  E-value=0.011  Score=50.43  Aligned_cols=34  Identities=24%  Similarity=0.465  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5799999999999999999999999999998874

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.94  E-value=0.015  Score=46.74  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||||.+|...+..|.+.|.+|+|+....
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            34699999999999999999999999999998754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.93  E-value=0.014  Score=48.85  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ....|+|||+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            46899999999999999999999996 8999997753

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.90  E-value=0.065  Score=48.40  Aligned_cols=44  Identities=9%  Similarity=0.070  Sum_probs=32.6

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEc-CCcEEE--cCEEEEcCCCChH
Q 022277          171 PESVQFSSELAKIETSGNGVTILELV-NGTRIY--ANIVIGCDGIRSP  215 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~-~g~~~~--ad~vV~A~G~~s~  215 (300)
                      |++++.+++|+++..++.. +.+... +++.+.  +|.||+|+|....
T Consensus        58 gv~~~~~~~V~~id~~~~~-v~~~~~~~~~~~~~~yd~lIiATG~~p~  104 (427)
T TIGR03385        58 GIDVKTNHEVIEVNDERQT-VVVRNNKTNETYEESYDYLILSPGASPI  104 (427)
T ss_pred             CCeEEecCEEEEEECCCCE-EEEEECCCCCEEecCCCEEEECCCCCCC
Confidence            8899899999999876655 324333 245677  9999999998553

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.89  E-value=0.012  Score=49.90  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|.|||+|..|...|..|++.|++|+++|.++..
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~   38 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA   38 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence            47999999999999999999999999999987643

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.82  E-value=0.024  Score=50.47  Aligned_cols=36  Identities=28%  Similarity=0.269  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|+|+|+.|+.+|..+...|.+|+++|.++.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            457899999999999999999999999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.82  E-value=0.0084  Score=42.48  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            46799999999999999999999999999998774

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.80  E-value=0.014  Score=50.12  Aligned_cols=30  Identities=27%  Similarity=0.323  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      +|+|||+|..|...|..|++.|.+|++++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            689999999999999999999999999998

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.79  E-value=0.024  Score=42.37  Aligned_cols=35  Identities=26%  Similarity=0.465  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~   91 (300)
                      ...+++|||+|-+|-++++.|.+.|.+ |+|+.|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            468999999999999999999999997 99999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.79  E-value=0.014  Score=50.07  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|+|||+|..|...|..|++.|.+|++++|+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            58999999999999999999999999999854

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.78  E-value=0.018  Score=46.21  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4579999999999999999999999999999864

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.78  E-value=0.013  Score=52.63  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.75  E-value=0.12  Score=50.78  Aligned_cols=35  Identities=14%  Similarity=0.303  Sum_probs=27.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---cCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~---~G~~V~viE~~~~   92 (300)
                      ..+|+|||||.+|+-+|....+   .+.++++.+..+.
T Consensus       550 Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~  587 (1028)
T PRK06567        550 RMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEK  587 (1028)
T ss_pred             CCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhh
Confidence            3689999999999999986654   4677777776543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.71  E-value=0.017  Score=41.72  Aligned_cols=32  Identities=34%  Similarity=0.519  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        61 VvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      |+|||.|..|..++..|.+.+.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            78999999999999999998889999999874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.71  E-value=0.017  Score=50.54  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|.|||+|..|...|..|++.|++|+++++..
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            469999999999999999999999999999853

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.57  E-value=0.019  Score=50.68  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            35679999999999999999999999999999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK04148 hypothetical protein; Provisional

Probab=95.53  E-value=0.015  Score=43.02  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..++++||.| .|...|..|++.|.+|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            4679999999 999999999999999999998875

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.51  E-value=0.021  Score=48.79  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5699999999999999999999999999998764

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=95.48  E-value=0.026  Score=48.47  Aligned_cols=34  Identities=24%  Similarity=0.504  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      .+|.|||+|..|..+|+.|+..|+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            479999999999999999999887 8999998654

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.42  E-value=0.021  Score=52.23  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|+|+|++|+.++..+...|.+|+++|.++.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467999999999999999999999999999998874

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.40  E-value=0.026  Score=48.67  Aligned_cols=34  Identities=26%  Similarity=0.550  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|++|+++|++..
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999998763

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.39  E-value=0.035  Score=48.61  Aligned_cols=137  Identities=18%  Similarity=0.163  Sum_probs=79.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHH--HhccccccceEEE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR--LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL--RSQFLEIKGMAVK  132 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~--~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~  132 (300)
                      .+...+|||||.+..+++.....  .+.+|.+|-..+.... .+     |         -+..++  ...-......++.
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY-mR-----P---------PLSKELW~~~dpn~~k~lrfk  241 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY-MR-----P---------PLSKELWWYGDPNSAKKLRFK  241 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc-cC-----C---------CcchhceecCCCChhhheeec
Confidence            45778999999987777665544  3677888766654321 00     0         000000  0011122234444


Q ss_pred             cCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      .++|.....+-.      .....+++.+|-+..   ..|+-+..+.+|..+..++..   |.++||.+|.+|..++|||.
T Consensus       242 qwsGkeRsiffe------pd~FfvspeDLp~~~---nGGvAvl~G~kvvkid~~d~~---V~LnDG~~I~YdkcLIATG~  309 (659)
T KOG1346|consen  242 QWSGKERSIFFE------PDGFFVSPEDLPKAV---NGGVAVLRGRKVVKIDEEDKK---VILNDGTTIGYDKCLIATGV  309 (659)
T ss_pred             ccCCccceeEec------CCcceeChhHCcccc---cCceEEEeccceEEeecccCe---EEecCCcEeehhheeeecCc
Confidence            444443322211      112234444443321   136789999999999888766   88999999999999999998


Q ss_pred             ChHhhhhc
Q 022277          213 RSPIAKWI  220 (300)
Q Consensus       213 ~s~~r~~~  220 (300)
                      .......+
T Consensus       310 ~Pk~l~~~  317 (659)
T KOG1346|consen  310 RPKKLQVF  317 (659)
T ss_pred             Ccccchhh
Confidence            76544444

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.37  E-value=0.027  Score=49.06  Aligned_cols=35  Identities=37%  Similarity=0.561  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            45789999999999999999999998 899999875

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.29  E-value=0.035  Score=43.11  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCC
Q 022277           56 VRKEDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      -...+|+|||+|- +|..+|..|.+.|.+|+++.|..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            3568999999996 69999999999999999999863

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.29  E-value=0.031  Score=48.71  Aligned_cols=35  Identities=31%  Similarity=0.572  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            46799999999999999999999999 899999864

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.29  E-value=0.028  Score=48.33  Aligned_cols=33  Identities=30%  Similarity=0.520  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      +|.|||+|.+|.++|+.|+..|+  +|.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            69999999999999999999995  7999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.28  E-value=0.022  Score=51.22  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||.|..|+.+|..|++.|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.28  E-value=0.034  Score=44.65  Aligned_cols=35  Identities=23%  Similarity=0.467  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            46899999999999999999999998 899999875

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.28  E-value=0.034  Score=45.00  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            46799999999999999999999999 599999874

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.25  E-value=0.033  Score=46.02  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            35799999999999999999999998 799999775

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.23  E-value=0.027  Score=51.87  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            346799999999999999999999999999999875

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.22  E-value=0.037  Score=43.29  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      +|+|||+|-.|...|..|++.|+ +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999999 599999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.19  E-value=0.038  Score=41.69  Aligned_cols=32  Identities=28%  Similarity=0.455  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      +|+|||+|-.|..+|..|.+.|+ +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999999 799999775

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.15  E-value=0.037  Score=48.12  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|++|++++|...
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999999653

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.15  E-value=0.026  Score=42.11  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        61 VvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ++|+|+|..+.+++..++..|++|+|+|.++..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~   33 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER   33 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence            589999999999999999999999999998753

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.12  E-value=0.022  Score=47.84  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+.+|+|||||.+|..+|..+.-.|.+|+|+|.+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            35799999999999999999999999999999985

>PRK08328 hypothetical protein; Provisional

Probab=95.11  E-value=0.038  Score=45.40  Aligned_cols=35  Identities=29%  Similarity=0.485  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            45789999999999999999999998 799998665

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.10  E-value=0.038  Score=45.83  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            45899999999999999999999998 799999765

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.05  E-value=0.035  Score=48.19  Aligned_cols=32  Identities=31%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||+|..|.+.|..|++.|.+|+++.|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            58999999999999999999999999999865

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.02  E-value=0.047  Score=47.09  Aligned_cols=37  Identities=27%  Similarity=0.468  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      ....+|+|||+|-+|.++|+.|...|+  ++.++|.+..
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            345799999999999999999999998  7999998654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.01  E-value=0.063  Score=47.75  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|||.|..|..+|..|...|.+|+++|.++.
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            457999999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.01  E-value=0.042  Score=45.08  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            46799999999999999999999999 799998765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.93  E-value=0.037  Score=47.96  Aligned_cols=32  Identities=31%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||+|..|...|..|++.|++|+++++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999875

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.91  E-value=0.034  Score=51.17  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|.|||+|..|...|..|++.|++|+++|+++..
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA   40 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            457999999999999999999999999999998653

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.90  E-value=0.04  Score=50.72  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.89  E-value=0.059  Score=40.57  Aligned_cols=33  Identities=27%  Similarity=0.520  Sum_probs=30.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      +|.|||+ |..|..+|+.|...++  ++.++|....
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            7999999 9999999999999876  6999998863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.81  E-value=0.051  Score=43.48  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            35899999999999999999999999 599999775

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.80  E-value=0.054  Score=46.65  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|..+|..|.+.|++|++++|...
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            35799999999999999999999999999998764

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.80  E-value=0.055  Score=43.28  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|..|..+|..|++.|+ +++++|.+.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            46899999999999999999999999 699999765

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.79  E-value=0.053  Score=44.37  Aligned_cols=35  Identities=37%  Similarity=0.482  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc---EEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG---SLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~---V~viE~~~   91 (300)
                      ...+|+|+|+|-+|..+|..|.+.|.+   +.|++|..
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            457899999999999999999999985   99999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.78  E-value=0.088  Score=44.71  Aligned_cols=35  Identities=34%  Similarity=0.439  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-+|-++|+.|.+.|. +|+|++|..
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            34689999999999999999999998 799999875

>PRK08223 hypothetical protein; Validated

Probab=94.72  E-value=0.057  Score=45.55  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            46899999999999999999999999 799999765

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.71  E-value=0.09  Score=40.24  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=29.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....++|+|=|..|-.+|..|+..|.+|+|.|.++
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            45789999999999999999999999999999987

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.70  E-value=0.039  Score=46.75  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||.|..|.+.|..|.+.|++|+++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~   34 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES   34 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999999999999999999999998753

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.68  E-value=0.058  Score=44.21  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ....|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            35799999999999999999999999 899999765

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=94.68  E-value=0.045  Score=49.85  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~   92 (300)
                      .+|.|||.|..|+.+|..|++.|  ++|+.+|.+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            46999999999999999999984  78999998764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.64  E-value=0.054  Score=47.67  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~   91 (300)
                      .+|+|||+|-+|..+|..|++.| .+|+|.+|..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            58999999999999999999999 8999999985

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.62  E-value=0.06  Score=46.31  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      .+|+|||+|..|..+|+.++..|+ +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            589999999999999999999876 9999999664

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.61  E-value=0.11  Score=46.60  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|+|.|..|..+|..|...|.+|+++|+++.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            457899999999999999999999999999998764

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.61  E-value=0.061  Score=44.16  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      +|+|||+|-.|..++..|++.|+ +++|+|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999998 799999775

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.61  E-value=0.059  Score=44.44  Aligned_cols=35  Identities=31%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-----------CcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-----------IGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-----------~~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..++..|++.|           .+++|+|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            6789999999999999999999974           3889999765

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.60  E-value=0.046  Score=47.96  Aligned_cols=33  Identities=30%  Similarity=0.507  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      .|+|+|+|+.||.++..+...|. +|+++|+++.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            69999999999999888888886 6777787764

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.58  E-value=0.05  Score=48.34  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||.|..|+.+|..++. |++|+++|++..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            58999999999999988885 999999999874

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.56  E-value=0.074  Score=45.99  Aligned_cols=36  Identities=14%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      ..+|+|||+|..|..+|+.++..|+ ++.++|.++..
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            4689999999999999999999997 99999988764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.53  E-value=0.067  Score=41.36  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||-|-.|...|..|.+.|++|.++|+.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            5799999999999999999999999999998863

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.52  E-value=0.043  Score=52.83  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|.|||+|..|...|..++..|++|+++|.+...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA  348 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            57999999999999999999999999999998643

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.49  E-value=0.062  Score=45.93  Aligned_cols=36  Identities=22%  Similarity=0.425  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||.|.+|..++..|.+.|.+|+++++.+.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            357999999999999999999999999999998853

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.46  E-value=0.057  Score=49.40  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|+|+|.+|+.++..+...|.+|+++|++..
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357999999999999999999999999999998864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.41  E-value=0.13  Score=41.23  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|+|.|-.|..+|..|.+.|.+|+++|++.
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            44689999999999999999999999999998764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02494 adenosylhomocysteinase

Probab=94.37  E-value=0.11  Score=46.99  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|+|.|.+|..+|..+...|.+|+++|+++.
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            457999999999999999999999999999998874

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.37  E-value=0.056  Score=46.43  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|+|+|..|...|+.|++.|.+|+++-|.+.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            689999999999999999999988888888774

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.37  E-value=0.075  Score=44.06  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+++|+|||..+..+|..++..|++|+|+|.++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            568999999999999999999999999999997765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=0.085  Score=45.56  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=35.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT   95 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~   95 (300)
                      ..+||+|.|-|+.-+..+..|+..|.+|+.||+++.-+.
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~   43 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS   43 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence            369999999999999999999999999999999997654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=94.33  E-value=0.066  Score=51.55  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|.|||||..|...|..++..|++|+++|.+...
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS  348 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            357999999999999999999999999999988643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.29  E-value=0.083  Score=45.48  Aligned_cols=35  Identities=23%  Similarity=0.576  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      ..+|.|||+|-+|.++|+.|...|+  ++.|+|.+..
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            4689999999999999999999887  6999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=94.26  E-value=0.075  Score=45.05  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      +|+|||+|-.|..++..|++.|+ +++|+|.+.
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~   33 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT   33 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            58999999999999999999998 799999765

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=94.26  E-value=0.15  Score=38.81  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~   92 (300)
                      ...+++|||+|..|.+.|..|.+.| .+|++++++..
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~   54 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE   54 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            4578999999999999999999996 78999998753

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.25  E-value=0.07  Score=46.64  Aligned_cols=48  Identities=19%  Similarity=0.301  Sum_probs=41.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLF  103 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~  103 (300)
                      +..+||||||-|..-..+|...++.|.+|+-+|+++..+....++++.
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            367999999999999999999999999999999999876555555544

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.25  E-value=0.055  Score=43.41  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....|.|||||..|.-.|...+..|++|.++|++...
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            5678999999999999999999999999999998753

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.20  E-value=0.072  Score=45.66  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      +|+|||+|-.|+.+|..|+..|+ +++|+|.+.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT   33 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence            58999999999999999999998 799999775

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.15  E-value=0.069  Score=45.80  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           61 IVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        61 VvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      |.|||+|..|..+|+.|+..|+ +|+++|.+..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            5799999999999999999887 9999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=94.14  E-value=0.079  Score=45.56  Aligned_cols=33  Identities=36%  Similarity=0.550  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      +|+|||+|-+|.++|+.|...|+  ++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            68999999999999999999995  7999999764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.12  E-value=0.17  Score=43.12  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~   91 (300)
                      ....++|+|||-+|.++|+.|++.|.+ |+|+.|+.
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            346799999999999999999999996 99999875

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=94.08  E-value=0.069  Score=51.55  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..|.|||||..|...|..++..|++|+++|.++..
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~  370 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAG  370 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHH
Confidence            57999999999999999999999999999988743

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=94.05  E-value=0.074  Score=45.75  Aligned_cols=35  Identities=20%  Similarity=0.488  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      ..+|.|||+|..|.+.|..|.+.|.  +|+++++++.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~   42 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE   42 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence            3579999999999999999999995  8999998753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.02  E-value=0.073  Score=48.46  Aligned_cols=33  Identities=33%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            699999999999999999999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
3rp8_A	407	Crystal Structure Of Klebsiella Pneumoniae R204q Hp		3e-14
3rp6_A	407	Crystal Structure Of Klebsiella Pneumoniae Hpxo Com		2e-12
3gmc_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-06
3alh_A	379	Higher Resolution And Native Structure Of 2-Methyl-		2e-06
3alk_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-06
3all_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-06
3alm_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-06
3gmb_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		3e-06
2r0c_A	549	Structure Of The Substrate-Free Form Of The Rebecca		2e-05
2x3n_A	399	Crystal Structure Of Pqsl, A Probable Fad-Dependent		2e-04
3c96_A	410	Crystal Structure Of The Flavin-Containing Monooxyg		4e-04
2rgj_A	402	Crystal Structure Of Flavin-Containing Monooxygenas		4e-04
4eip_A	549	Native And K252c Bound Rebc-10x Length = 549		6e-04

>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 8/228 (3%)
Query: 62  VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
           +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG   +  LG+G  + +
Sbjct: 27  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 86
Query: 122 QFLEIKGMAVKS-EDGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPESVQFSS 178
               ++ MA +    G  +  F      E        V R  L   + +    +SVQF  
Sbjct: 87  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 146
Query: 179 ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS-EPKYVGHCAYRGL 236
            + + E   +GVT+    +G+    +++I  DG  S +  W+ GF+ + +Y G+  + GL
Sbjct: 147 RVTRCEEDADGVTVW-FTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGL 205
Query: 237 GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLA 284
                      +     G G +   +PVS  + Y+F   + P P  LA
Sbjct: 206 VEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFF--DVPLPAGLA 251

>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 34/241 (14%)
Query: 62  VIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRS 121
           +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG      LG G D+  
Sbjct: 27  IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXG-DIXE 85
Query: 122 QFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPP---------- 171
            F            G  LR   ++D  + +         L+E   ++  P          
Sbjct: 86  TF------------GGPLRRXAYRDFRSGENXTQFSLAPLIERTGSRPCPVSRAELQREX 133
Query: 172 ------ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI-GFS- 223
                 +SVQF   + + E   +GVT+    +G+    +++I  DG  S +  W+ GF+ 
Sbjct: 134 LDYWGRDSVQFGKRVTRCEEDADGVTVW-FTDGSSASGDLLIAADGSHSALRPWVLGFTP 192
Query: 224 EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYL 283
           + +Y G+  + GL           +     G G R    PVS  + Y+F   + P P  L
Sbjct: 193 QRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFF--DVPLPAGL 250
Query: 284 A 284
           A
Sbjct: 251 A 251

>pdb|3GMC|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase With Substrate Bound Length = 415

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 52  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 108
Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 109 -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 166
Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 167 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 210

>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of 2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase Length = 379

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 73  -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 130
Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 131 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174

>pdb|3ALK|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270f Length = 379

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 73  -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 130
Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 131 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174

>pdb|3ALL|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270a Length = 379

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 73  -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 130
Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 131 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174

>pdb|3ALM|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant C294a Length = 379

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 16  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 72
Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R + R  L + L N+     V  S     
Sbjct: 73  -LQGSHTPPTYETWMHNKSVS-KETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEA 130
Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 131 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174

>pdb|3GMB|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase Length = 415

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 63  IVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ 122
           + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+   
Sbjct: 52  VAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV--- 108
Query: 123 FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAK 182
            L+        E     +S   K+       R   R  L + L N+     V  S     
Sbjct: 109 -LQGSHTPPTYETWXHNKSVS-KETFNGLPWRIXTRSHLHDALVNRARALGVDISVNSEA 166
Query: 183 IETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
           +  + + V  L L  G  + A++++G DG+ S +   IGF + ++V
Sbjct: 167 V--AADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 210

>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin Biosynthetic Enzyme Rebc Length = 549

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-------GGTSLTLFKN----- 105
           + D++I+G G  G+A A+ L    +G LV+EQ D   T       G  S+ LF+      
Sbjct: 26  ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAK 85
Query: 106 -----GWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRI 160
                GW     L      R    E+  + + + D R          + + E  A+  + 
Sbjct: 86  QIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTR-------ATPEHTPEPDAICPQH 138
Query: 161 LLETLANQLPPESVQFSSELAKIETSGNGV--TILELVNG-TR-IYANIVIGCDGIRSPI 216
            L  L  +   E ++  S L   E   + V  TI +L  G TR ++A  ++ CDG  SP 
Sbjct: 139 WLAPLLAEAVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPT 198
Query: 217 AKWIGFSEP 225
            K +G   P
Sbjct: 199 RKALGIDAP 207

>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent Monooxygenase From Pseudomonas Aeruginosa Length = 399

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           D++I G GI G   A  L R G   +V+EQA   R    +  L   G  V++A G+ +++
Sbjct: 8   DVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEV 67
Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVE----RRILLETLANQLPPESVQ 175
             +   ++       DG  LR F +   DA      +     RR++LE +  +   E + 
Sbjct: 68  TRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEML- 126
Query: 176 FSSELAKIETSG-NGVTILELVNGTRIYANIVIGCDGIRSPIAKWI 220
           F + +  ++    + +  + L +G  +   +V+G DGI S + + +
Sbjct: 127 FETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRL 172

>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase Phzs From Pseudomonas Aeruginosa. Northeast Structural Genomics Consortium Target Par240 Length = 410

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 23/173 (13%)
Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSL-VIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           DI+I GAGI GL+ A++L + GIG + ++E +  +R  G  + +       L  LG+G  
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65
Query: 119 LRS--------QFLEIKGMAVKSEDGRELRSFGFKDEDASQEV---RAVERRILLETLAN 167
           L +        ++++  G  V SE        G +  +A  +    R   + ILL  +  
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSE------PRGVEAGNAYPQYSIHRGELQMILLAAVRE 119
Query: 168 QLPPESVQFSSELAKIETSGNGVTILELVNG----TRIYANIVIGCDGIRSPI 216
           +L  ++V+    + +IE   +G  ++   +G      + A++++G DGI S +
Sbjct: 120 RLGQQAVRTGLGVERIEER-DGRVLIGARDGHGKPQALGADVLVGADGIHSAV 171

>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 23/173 (13%)
Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSL-VIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           DI+I GAGI GL+ A++L + GIG + ++E +  +R  G  + +       L  LG+G  
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65
Query: 119 LRS--------QFLEIKGMAVKSEDGRELRSFGFKDEDASQEV---RAVERRILLETLAN 167
           L +        ++++  G  V SE        G +  +A  +    R   + ILL  +  
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSE------PRGVEAGNAYPQYSIHRGELQXILLAAVRE 119
Query: 168 QLPPESVQFSSELAKIETSGNGVTILELVNG----TRIYANIVIGCDGIRSPI 216
           +L  ++V+    + +IE   +G  ++   +G      + A++++G DGI S +
Sbjct: 120 RLGQQAVRTGLGVERIEER-DGRVLIGARDGHGKPQALGADVLVGADGIHSAV 171

>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x Length = 549

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 28/189 (14%)
Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-------GGTSLTLFKN----- 105
           + D++I+G G  G+A A+ L    +G LV++  D   T       G  S+ LF+      
Sbjct: 26  ETDVLILGGGPVGMALALDLAHRQVGHLVVDAGDGTITHPKVSTIGPRSMELFRRWGVAK 85
Query: 106 -----GWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRI 160
                GW     L      R    E+  + + + D R          + + E  A+    
Sbjct: 86  QIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTR-------ATPEHTPEPDAICPAH 138
Query: 161 LLETLANQLPPESVQFSSELAKIETSGNGV--TILELVNG-TR-IYANIVIGCDGIRSPI 216
            L  L  +   E ++  S L   E   + V  TI +L  G TR ++A  ++ CDG  SP 
Sbjct: 139 WLAPLLAEAVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSPT 198
Query: 217 AKWIGFSEP 225
            K +G   P
Sbjct: 199 RKALGIDAP 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	2e-56
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	7e-42
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	3e-38
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	9e-37
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	1e-36
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-24
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	1e-18
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-17
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	5e-16
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	9e-16
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	6e-15
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	7e-15
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	8e-15
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	1e-14
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	1e-14
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-14
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	2e-14
3atr_A	453	Conserved archaeal protein; saturating double bond	8e-12
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	2e-10
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	4e-10
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-08
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	4e-08
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	7e-08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-07
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-07
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	2e-07
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-07
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	4e-07
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	7e-07
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	7e-07
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	8e-07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	8e-07
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	1e-06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	1e-06
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	1e-06
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-06
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	2e-06
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	3e-06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	3e-06
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	4e-06
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	4e-06
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	5e-06
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	5e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	6e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	6e-06
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	8e-06
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	9e-06
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	9e-06
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	1e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-05
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	2e-05
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-05
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	2e-05
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-05
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	3e-05
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	3e-05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	3e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	4e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	4e-05
3dme_A	369	Conserved exported protein; structural genomics, P	4e-05
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	8e-05
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	1e-04
2bry_A	497	NEDD9 interacting protein with calponin homology a	1e-04
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	2e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	2e-04
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	2e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	3e-04
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	7e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	9e-04
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	9e-04

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score =  186 bits (474), Expect = 2e-56
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 6/230 (2%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVG 116
                +++GAGI GL+ AV+L++ GI   V E    ++  G +++++ NG   +  LG+G
Sbjct: 22  GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMG 81

Query: 117 SDLRSQFLEIKGMAVKS-EDGRELRSFGFKD--EDASQEVRAVERRILLETLANQLPPES 173
             + +    ++ MA +    G  +  F      E        V R  L   + +    +S
Sbjct: 82  DIMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDS 141

Query: 174 VQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI--GFSEPKYVGHC 231
           VQF   + + E   +GVT +   +G+    +++I  DG  S +  W+     + +Y G+ 
Sbjct: 142 VQFGKRVTRCEEDADGVT-VWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYV 200

Query: 232 AYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG 281
            + GL           +     G G +   +PVS  + Y+F     P   
Sbjct: 201 NWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGL 250

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score =  147 bits (374), Expect = 7e-42
 Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 16/233 (6%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS--LRTGGTSLTLF-KNGWSVLDAL 113
             +++ I+G G  GL  A  LQ+ GI   V E+ +    R  G +L L   +G   +   
Sbjct: 25  SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA 84

Query: 114 GVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPES 173
           G+        L   G+ +  E G  L +   K E+   +   + R  L   L N L  ++
Sbjct: 85  GLLQTYYDLALP-MGVNIADEKGNILSTKNVKPEN-RFDNPEINRNDLRAILLNSLENDT 142

Query: 174 VQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAY 233
           V +  +L  +E      T L   N     A++VI  +G  S + K++  +E +  G    
Sbjct: 143 VIWDRKLVMLEPGKKKWT-LTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNI 201

Query: 234 RGLGYYPNGQPFEPK--------LNYIYGRGVRAGYVPVSPTKVYWFICHNNP 278
           +        +   P               +G      P +   +++ I    P
Sbjct: 202 QAD--IHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTP 252

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score =  137 bits (348), Expect = 3e-38
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 26/233 (11%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLR 120
             + G G AGL  A++L++ G    + E++  LR  G  + L+ NG  VL+ LG   D+ 
Sbjct: 14  AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVL 73

Query: 121 SQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVR------AVERRILLETLANQLPPESV 174
                    +               ++  S+E         + R  L + L N+     V
Sbjct: 74  -------QGSHTPPTYETWMH----NKSVSKETFNGLPWRIMTRSHLHDALVNRARALGV 122

Query: 175 QFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGF-SEPKYVGHCAY 233
             S     +     G   L+   G  + A++++G DG+ S +   IGF  +         
Sbjct: 123 DISVNSEAVAADPVGRLTLQ--TGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLI 180

Query: 234 RGLGYYPNGQPFEPKLN------YIYGRGVRAGYVPVSPTKVYWFICHNNPTP 280
           R +      +    + +        + R  R  Y P +  ++Y  +      P
Sbjct: 181 RLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADP 233

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score =  134 bits (340), Expect = 9e-37
 Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 18/240 (7%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           DI+I GAGI GL+ A++L + GIG   ++E +  +R  G  + +       L  LG+G  
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65

Query: 119 LRSQFLEIKGMAVKSEDGRELRSFGFKDED---ASQEV--RAVERRILLETLANQLPPES 173
           L +  +    +    + G  + S     E      Q    R   + ILL  +  +L  ++
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA 125

Query: 174 VQFSSELAKIETSGNGVTIL---ELVNGTRIYANIVIGCDGIRSPIAKWI--GFSEPKYV 228
           V+    + +IE     V I           + A++++G DGI S +   +        + 
Sbjct: 126 VRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHG 185

Query: 229 GHCAYRGL-------GYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPG 281
           G   +RG+                +   + +    + A +     + V W     +   G
Sbjct: 186 GITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVG 245

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score =  133 bits (338), Expect = 1e-36
 Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 12/182 (6%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LRTGGTSLTLFKNGWSVLDALGV 115
             + I +VG  I+GL  A+ L+  G+   V E++   L   GT + +       L   GV
Sbjct: 4   TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGV 63

Query: 116 GSDLRSQFLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESV 174
             +L S  +    M       G  + S          + R      +   L     PE  
Sbjct: 64  --ELDSISVPSSSMEYVDALTGERVGSVPA-------DWRFTSYDSIYGGLYELFGPERY 114

Query: 175 QFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYR 234
             S  L  +      V  +   +GT+  AN VIG DG  S + K +   EP Y G+  +R
Sbjct: 115 HTSKCLVGLSQDSETVQ-MRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWR 173

Query: 235 GL 236
           G+
Sbjct: 174 GV 175

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  100 bits (252), Expect = 2e-24
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 7/179 (3%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           D++I G GI G   A  L R G   +V+EQA   R    +  L   G  V++A G+ +++
Sbjct: 8   DVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEV 67

Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPES---VQF 176
             +   ++       DG  LR F +   DA      +    L   +  ++  E+   + F
Sbjct: 68  TRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLF 127

Query: 177 SSELAKIETSGNGVTI-LELVNGTRIYANIVIGCDGIRSPIAKW---IGFSEPKYVGHC 231
            + +  ++         + L +G  +   +V+G DGI S + +    I      Y    
Sbjct: 128 ETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPM 186

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 85.0 bits (210), Expect = 1e-18
 Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 27/241 (11%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSD 118
           D++++G G  G   A  +   G   L++E+    R   G SL L      +   LG+  +
Sbjct: 9   DLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESL-LPATVHGICAMLGLTDE 67

Query: 119 LRSQ-FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRA--VERRILLETLAN--QLPPES 173
           ++   F   +G   +     E  +FGF          A  VER    + L    +     
Sbjct: 68  MKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVD 127

Query: 174 VQFSSELAKIETSGNGVTILELVNGT----RIYANIVIGCDGIRSPIAKWIGFSEP-KYV 228
           V+   E+  +   G     +   N        +A  ++   G R+ +++ +G     ++ 
Sbjct: 128 VRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRFF 187

Query: 229 GHCAYRGLGYYPNGQPFE-PKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVM 287
            + A    GY+ NG+    P+   I     + G+        +W+I    P    L  V 
Sbjct: 188 QNVALY--GYFENGKRLPAPRQGNILSAAFQDGW--------FWYI----PLSDTLTSVG 233

Query: 288 L 288
            
Sbjct: 234 A 234

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 81.9 bits (202), Expect = 1e-17
 Identities = 42/216 (19%), Positives = 84/216 (38%), Gaps = 17/216 (7%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSD 118
            + I+G G AG    ++L +LG    + E++   R   G SL       S+L+ LG+   
Sbjct: 25  KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLL--PGTMSILNRLGLQEK 82

Query: 119 LRSQ-FLEIKGMAVKSEDGRELRSFGFKDEDASQEVR----AVERRILLETLAN--QLPP 171
           + +Q +++           +   +F F     +  V      V+R    + L +  +   
Sbjct: 83  IDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRG 142

Query: 172 ESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIRSPIAKWIGFSEP-KY 227
            +V   + +  ++ S     +L +  G     + ++ VI   G   PI++ +G  +  ++
Sbjct: 143 ITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQYDEF 202

Query: 228 VGHCAYRGLGYYPNGQPFE-PKLNYIYGRGVRAGYV 262
             + A     Y+    PFE       Y      G+V
Sbjct: 203 YRNFAVW--SYFKLKDPFEGDLKGTTYSITFEDGWV 236

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 18/228 (7%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS--LTLFKNGWSV--LDALGV 115
            + I+GAG +GL     L + GI ++++E+       G      L      V  L   GV
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVL--EQGMVDLLREAGV 61

Query: 116 GSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVR-----AVERRILLETLANQLP 170
              +    L  +G+ +      + R    K     + V       V R  L+E       
Sbjct: 62  DRRMARDGLVHEGVEIA--FAGQRRRIDLKRLSGGKTVTVYGQTEVTRD-LMEARE-ACG 117

Query: 171 PESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIRSPIAKWIGFSEPKYV 228
             +V  ++E+   +  G    +    +G   R+  + + GCDG      + I     K  
Sbjct: 118 ATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVF 177

Query: 229 GHC-AYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH 275
                +  LG   +  P   +L Y       A     S T+  +++  
Sbjct: 178 ERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSQYYVQV 225

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 76.0 bits (187), Expect = 9e-16
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 16/195 (8%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSD 118
           D++++GAG AG   A  + + G    ++E+    R   G SL         LD  G    
Sbjct: 7   DVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLL--PRCMEHLDEAGFLDA 64

Query: 119 LRSQ-FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRA--VERRILLETLANQLPPESVQ 175
           +++Q F +  G       G+E+  F F D+ ++       V R    +TLA++   + V 
Sbjct: 65  VKAQGFQQKFGAKFVR--GKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVD 122

Query: 176 --FSSELAKIETSGNGVTI-LELVNGT--RIYANIVIGCDGIRSPIAKWIGFSEPKYVGH 230
             +   +  I+  G      +E +NG    I A  +I   G    I +  G  +P     
Sbjct: 123 VEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFES 182

Query: 231 C-AYRGLGYYPNGQP 244
                   +  + + 
Sbjct: 183 RRTLF--THIKDVKR 195

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 28/177 (15%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--GTSL---TLFKNGWSVLDALG 114
            +++VGAG AG+  A  L+  G+  +V+E+         G      T+      V D  G
Sbjct: 13  AVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTM-----EVFDQRG 67

Query: 115 VGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDED------ASQEVRAVERRILLETLANQ 168
           +              + +   G     FG  +          Q V   E    LE  A  
Sbjct: 68  ILPRFGE-----VETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSV--TET--HLEQWATG 118

Query: 169 LPPESVQFSSELAKIETSGNGVTI-LELVNGT-RIYANIVIGCDGIRSPIAKWIGFS 223
           L  + ++   E+  +   G GVT+ +    G   + A  ++GCDG RS + K  GF 
Sbjct: 119 LGAD-IRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFD 174

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 73.6 bits (181), Expect = 8e-15
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 18/221 (8%)

Query: 13  SSLHYLHSRSFHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLA 72
           S  H+ H  +     ++ G               +  + A+      D+V+VG G  GL 
Sbjct: 4   SHHHHHHGMASMTGGNNMGRDLYDDDDKDPGRRMMHNSNADDAALTTDVVVVGGGPVGLM 63

Query: 73  TAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVK 132
            A  L+  G+G+LV+E+         +  L       LD  G+           KG+   
Sbjct: 64  LAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPF- 122

Query: 133 SEDGRELRSFGFKDEDA--------SQEVRAVERRILLETLANQLPPESVQFSSELAKIE 184
              G   +   F   D          Q     E  +L E    +   E +    E+ ++ 
Sbjct: 123 --AGIFTQGLDFGLVDTRHPYTGLVPQSR--TE-ALLAEHAR-EAGAE-IPRGHEVTRLR 175

Query: 185 TSGNGVTI-LELVNGT-RIYANIVIGCDGIRSPIAKWIGFS 223
                V + +   +G   + A   +GCDG RS + +     
Sbjct: 176 QDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADR 216

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 72.9 bits (178), Expect = 1e-14
 Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 22/218 (10%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGS--LVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           I+++GAG AGL  A  L++        ++E+ D     G  + L               D
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 119 L--RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQF 176
              R     ++   +   +   L S G         +  VERR L+  L ++   + +  
Sbjct: 63  APERLNPQFLEDFKLVHHNEPSLMSTG-------VLLCGVERRGLVHALRDKCRSQGIAI 115

Query: 177 SSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIG-FSEPKYVGHCAYRG 235
                          +LE         ++V+  +G+    A +          G   Y  
Sbjct: 116 R----------FESPLLEHGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGRNKYIW 165

Query: 236 LGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI 273
            G                     A     S T   + +
Sbjct: 166 YGTSQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIV 203

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 28/177 (15%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG--GTSL---TLFKNGWSVLDALG 114
            +++VGAG AGL  A  L+  G+  +V+EQ         G      T+      V D  G
Sbjct: 14  SVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTM-----EVFDQRG 68

Query: 115 VGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDED------ASQEVRAVERRILLETLANQ 168
           +           +G       GR +  FG  +          Q     E  +L E     
Sbjct: 69  ILPAFGPVETSTQGHF----GGRPVD-FGVLEGAHYGVKAVPQST--TE-SVLEEWAL-G 119

Query: 169 LPPESVQFSSELAKIETSGNGVTI-LELVNGTR-IYANIVIGCDGIRSPIAKWIGFS 223
              E +     +  +   G+ V + +E  +G R +    V+GCDG RS + K  GF 
Sbjct: 120 RGAE-LLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFD 175

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 50/284 (17%), Positives = 82/284 (28%), Gaps = 49/284 (17%)

Query: 31  GFCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA 90
           G        S     R S   A  +    D++I+G G  G+A A+ L    +G LV+EQ 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMNAPIET---DVLILGGGPVGMALALDLAHRQVGHLVVEQT 58

Query: 91  DSL----RTGGTSL-TLFKNGWSVLDALGVGSDLRSQFLEIKGMA----VKSEDGRELRS 141
           D      R G     ++      +    GV   +R+             V    G E+  
Sbjct: 59  DGTITHPRVGTIGPRSM-----ELFRRWGVAKQIRTAGWPGDHPLDAAWVTRVGGHEVYR 113

Query: 142 FGFKDEDAS-------QEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILE 194
                 D         +      +  L   LA  +  E ++  S L   E   + V    
Sbjct: 114 IPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAV-GERLRTRSRLDSFEQRDDHVR-AT 171

Query: 195 LVNGT-----RIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKL 249
           + +        ++A  ++ CDG  SP  K +G   P                 +      
Sbjct: 172 ITDLRTGATRAVHARYLVACDGASSPTRKALGIDAP----------------PRHRTQVF 215

Query: 250 NYIYGRGVRAGYVPVSPTKVYWFICHNNPTPGYLALVMLKHIWM 293
             I  R        +   +   F      +     L  L    +
Sbjct: 216 RNILFRAPELR--SLLGERAALFFFLMLSSSLRFPLRALDGRGL 257

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 48/266 (18%), Positives = 82/266 (30%), Gaps = 56/266 (21%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL----RTGGTSL-TLFKNGWSVLDALG 114
           D+++VGAG+ GL+TA+ L R G+  LV+E+   L    R  G +  T+      +L   G
Sbjct: 7   DVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTM-----ELLRIGG 61

Query: 115 VGSDLRSQ------FLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVER---------- 158
           V  ++           +      +S  G  LR+     +D                    
Sbjct: 62  VADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDK 121

Query: 159 --RILLETLANQLPPESVQFSSELAKIETSGNGVTI---LELVNGTRIY---ANIVIGCD 210
              ILL     +     ++F + L       +         L      Y   A  ++G D
Sbjct: 122 LEPILLAQAR-KHGGA-IRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGAD 179

Query: 211 GIRSPIAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVY 270
           G RS + + +G                    G      +  +      +G +    T  Y
Sbjct: 180 GNRSLVRESLGIGRY----------------GHGTLTHMVGVIFDADLSGIMEPGTTGWY 223

Query: 271 WFICHNNPT-PGYLALVMLKHIWMRF 295
           +     +P   G             F
Sbjct: 224 YLH---HPEFKGTFGPTDRPDRHTLF 246

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 32/182 (17%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG----GTSLTLFKNGWSVLDALGV 115
           D++I+G G AG + A  L R G+  L+++     R G    G +++      +  D LG+
Sbjct: 8   DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSK-----AHFDKLGM 62

Query: 116 GSDLRSQFL-EIKGMAVKSEDGRELRSFGFK---------DEDASQEVRAVER--RILLE 163
                 +   +I G+ + S D + + +   +         ++   +   A +R   I   
Sbjct: 63  PYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLK--EAQDRGVEIWDL 120

Query: 164 TLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFS 223
           T A +   E       +     +   +T         +Y+ +V+   G        +   
Sbjct: 121 TTAMKPIFEDGYVKGAVLFNRRTNEELT---------VYSKVVVEATGYSRSFRSKLPPE 171

Query: 224 EP 225
            P
Sbjct: 172 LP 173

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 60  DIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           D++IVG G AGL  A  L     I + ++EQ +     G +  +      + +A      
Sbjct: 34  DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS 93

Query: 119 LRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRA------------VERRILLETLA 166
           +  +   I  +     D  +             E               V     LE + 
Sbjct: 94  ILKEACWINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVH-DHYLERMR 152

Query: 167 NQLPPESVQFSSELAKIETSGNGVTILELVNGTR-----------IYANIVIGCDGIRSP 215
           N        ++  +  ++           V   R           + A  V+GCDG RS 
Sbjct: 153 NSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN 212

Query: 216 IAKWIGF 222
           + + IG 
Sbjct: 213 VRRAIGR 219

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 59.1 bits (142), Expect = 4e-10
 Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 24/227 (10%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQ--ADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           I IVGAG AGL   + L++  +   V      D         T+  N  +V   + +  +
Sbjct: 25  IGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVN 84

Query: 119 L-RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFS 177
              S+     G       G +   F     D     RAV+ R+    L            
Sbjct: 85  EWPSEEFGYFGHYY-YVGGPQPMRF---YGDLKAPSRAVDYRLYQPMLMR-------ALE 133

Query: 178 SELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGL- 236
           +   K          LE ++      ++++ C G +  + K               R L 
Sbjct: 134 ARGGKFCYDAVSAEDLEGLSEQ---YDLLVVCTG-KYALGKVFEKQSENSPFEKPQRALC 189

Query: 237 -GYYPNGQPFEP---KLNYIYGRGVRAGYVPVSPT-KVYWFICHNNP 278
            G +   +        +++  G G       +S        +  N+ 
Sbjct: 190 VGLFKGIKEAPIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHI 236

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT------SLTLF 103
           D+V++G G +GL+    L+R G+  ++++       GG       SL LF
Sbjct: 5   DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA--SPGGAWQHAWHSLHLF 52

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTSLTLFKNGWSV 109
           +   I I+GAG AGLA  + L++ G     ++E+ D    GG   +   +G   
Sbjct: 5   KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD--HVGGKCHSPNYHGRRY 56

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 8/54 (14%)

Query: 56  VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT------SLTLF 103
           ++   + I+GAG AG+  A++L+  GI  ++I +  ++  G +      S    
Sbjct: 2   MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTV--GHSFKHWPKSTRTI 53

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
           ++ +VG GI+GLA A  L+  G  ++++E +   R GG   T    G+
Sbjct: 18  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA--RLGGAVGTHALAGY 63

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 48  SIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
             A  +     + + ++GAG++GLA A  L+  G+   V E     + GG   ++ ++G 
Sbjct: 3   PSAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG--KAGGKLRSVSQDGL 60

Query: 108 SV 109
             
Sbjct: 61  IW 62

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 47  LSIAKA--EADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL-- 102
           L IA+   +A    + +VIVGAG+AGL+ A  L   G    V+E ++  R GG   T   
Sbjct: 20  LEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE--RPGGRVRTYRN 77

Query: 103 FKNGWSV 109
            + GW  
Sbjct: 78  EEAGWYA 84

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
            + D+ IVGAG +GLA A +L++ G+   VIE  D  R GG + T   +G  +
Sbjct: 4   LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARD--RVGGRTWTDTIDGAVL 54

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
           D++++G G  GL     L   G  +L++E  D  R GG S +   +G+  
Sbjct: 41  DVIVIGGGYCGLTATRDLTVAGFKTLLLEARD--RIGGRSWSSNIDGYPY 88

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 48 SIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          ++        + D+++VGAG +GL     L+ LG    VIE A  +  GG 
Sbjct: 6  TVDSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV--GGV 54

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 50 AKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
            A       D+V+VGAGIAGL      +  G+     E A  +  GG 
Sbjct: 13 PDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGV--GGV 59

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 53 EADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
           A     D V++GAG+ G+  A  + + G+  L IE  + +  GGT
Sbjct: 4  RAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDV--GGT 47

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 48.9 bits (116), Expect = 8e-07
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           D +IVG+G+ G   A  L++L    LVIE+ +    GG + T    G  +  
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN--HIGGNAYTEDCEGIQIHK 52

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D+++VGAG  G+A    L + G+ +L+++  D   T G+ 
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 47  LSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
               K     +   ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T  K  
Sbjct: 267 YKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATFRKGN 324

Query: 107 WSV 109
           +  
Sbjct: 325 YVA 327

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG---TSLTLFKNGWSV 109
           D ++VG G +GL  A  L   G   L++E  +  R GG   +  +    G  V
Sbjct: 3   DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE--RLGGRAYSRESRNVPGLRV 53

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 50  AKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
           A A A++    IVI+GAG  GL  AV L  LG  +  + + +    GG S +     
Sbjct: 1   AIAMAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND-TPGGLSRSFLDEN 56

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTL 102
             + I+IVGAGIAGL     L R G    ++E A++ R GG   T 
Sbjct: 43  PPKRILIVGAGIAGLVAGDLLTRAGHDVTILE-ANANRVGGRIKTF 87

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGS--LVIEQADSLRTGGTSLTLFKNGWSV 109
            + +VIVG GI GLA A   +R        ++E  +  R GG   T  ++G+++
Sbjct: 4   SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE--RLGGKVATYREDGFTI 55

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
           +   ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T  K  +  
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATFRKGNYVA 156

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG 97
           K D+V+VG GI+G+A A  L   G+  +V+E  D  R GG
Sbjct: 3  NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD--RVGG 41

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 58  KEDIVIVGAGIAGLATAVSL-QRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
             D++++GAG  GL  A  L Q  G   ++++  +    GG + T       + D
Sbjct: 10  SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE--TPGGLASTDVTPEGFLYD 62

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
             V+VGAG+ GL     L R G   +V+E++  +  GG    L   G+
Sbjct: 2   RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI--GGRFTNLPYKGF 47

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG 97
           +V++G G AGL +A  LQ+ G    V+E     R GG
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEART--RPGG 48

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 13  SSLHYLHSRS-FHCPQSSSGFCFQTRTRSRSKAIRLSIAKAEADVRKE------------ 59
           +S H  H    F+C +  S   F  +    S A +        D  K             
Sbjct: 66  TSCHKGHEEPKFYCNECHS---FDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETT 122

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
            +++VGAG AG   +++ ++ G   +++++A    +GG S
Sbjct: 123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP--FSGGNS 160

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 13  SSLHYLHSRS-FHCPQ-SSSGFCFQTRTRSRSKAIRLSIAKAEADVRKE-------DIVI 63
           +S H  H +S  +C    S GF      +   K + +   KA  D           D+VI
Sbjct: 72  TSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVI 131

Query: 64  VGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
           +G+G AGLA AVS +  G   +++E+      GG +
Sbjct: 132 IGSGGAGLAAAVSARDAGAKVILLEKEP--IPGGNT 165

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRL------GIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
           K+ +VI+G GI GLA A  +++        +   ++E +   R GG   T+ K+G+ +
Sbjct: 5   KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP--RVGGKIQTVKKDGYII 60

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTSLTLFKNGWSV 109
            +++VGAG++G++ A  L   GI   L++E  D    GG        G +V
Sbjct: 6   RVIVVGAGMSGISAAKRLSEAGITDLLILEATD--HIGGRMHKTNFAGINV 54

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D++I+G+G  G A      R G+  L+ +        G+ 
Sbjct: 4  DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH 43

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 36 TRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT 95
              +  +  + +    + + +  D +IVGAG AG   A  L   G   L++++      
Sbjct: 7  PSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP--HI 64

Query: 96 GG 97
          GG
Sbjct: 65 GG 66

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D+V+VG G  GLATA  +   G   LV+E+       G +
Sbjct: 6  DVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGT 45

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTS 99
           ++IVGAG  G +TA+ L R G  +  V++           
Sbjct: 8  SLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAG 48

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGS--LVIEQADSLRTGGTSLTL-FKNGWSV 109
            +V++G GI+GLA +  L R       +++E ++  R GG   ++   NG   
Sbjct: 4   TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE--RLGGWIRSVRGPNGAIF 54

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVI-EQADSLRTGGT 98
          D V++GAG  G+     L      + V  ++AD    GGT
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGP--GGT 47

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG 97
            V++GAG+ GL +A  L + G    V E+      GG
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT--GG 37

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 52 AEADVRKEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTS 99
            + + + D V+VGAG+ GLA A  L+    GS LV++        G S
Sbjct: 17 RGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA-GHAPGSGDS 64

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 57 RKEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGG 97
           K+ ++I+GAGIAGL  A +L + GI   LV+E  D  R GG
Sbjct: 7  AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD--RVGG 46

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVL 110
           + + I+IVGAG +G      L   G    +I+Q D    GG S     +  +V+
Sbjct: 2   KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD--HIGGNSYDARDSETNVM 53

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 50  AKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSL 100
           A A A     D+V+VG+G AG + A+S    G   ++IE+      GG + 
Sbjct: 118 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEP--VIGGNAK 166

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D+V+ G GIAG+A ++   R G   LV+E+      GG +
Sbjct: 43 DVVVAGYGIAGVAASIEAARAGADVLVLERTSGW--GGAT 80

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D +++GAG+ GLA A +L   G   LV E A+ + TG +S
Sbjct: 6  DCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSS 45

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 60  DIVIVGAGIAGLATAVSL-----QRLGIGSLVIEQADSLRTGGTSLTLFKNGWS----VL 110
           D++IVGAG AGL  A  L     Q+  +   +I++  +    G +  L           L
Sbjct: 10  DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGL----QCRTLESL 65

Query: 111 DALGVGSDLRSQFLEIKGMAVKSEDGRE 138
             LG+   + S+  ++  +A+ + D   
Sbjct: 66  KNLGLADKILSEANDMSTIALYNPDENG 93

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Length = 549

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 40/238 (16%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD-----A 112
            E  +++G G  GL   + L ++G   +++E+   +R        F      L+      
Sbjct: 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRK-RTLNPESNVQ 165

Query: 113 LGVG-----SDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLAN 167
            G G     SD +             +   E    G  +E        +    L+  +  
Sbjct: 166 FGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEK 225

Query: 168 QLPP-----ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGF 222
                      ++FS+ +  +      +T + L NG  I +  V+   G  +        
Sbjct: 226 MRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA--RDTFEM 283

Query: 223 SEPKYVG--------------------HCAYRGLGYYPNGQPFEPKLNY--IYGRGVR 258
              + V                        +     +P     + KL +    GR V 
Sbjct: 284 LHERGVYMEAKPFSVGFRIEHKQSMIDEARFGPNAGHPILGAADYKLVHHCKNGRTVY 341

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 29/199 (14%)

Query: 55  DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALG 114
                  ++VGAG  GL  AV L  LG   +++E+     +    L L+      L ALG
Sbjct: 89  ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKF-SRHNVLHLWPFTIHDLRALG 147

Query: 115 VGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESV 174
                  +F               L     +         A+   + +           V
Sbjct: 148 A-KKFYGRFC-----------TGTLDHISIRQLQLLLLKVALLLGVEIHW--------GV 187

Query: 175 QFSSELAKIETSGNGVTILELVNG----TRIYANIVIGCDGIRSPIAKWIGFSEPKYVGH 230
           +F+  L      G+G       N          +++I   G +     +      +  G 
Sbjct: 188 KFTG-LQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIR---EMRGK 243

Query: 231 CAYRGLGYYPNGQPFEPKL 249
            A      + NG+  E   
Sbjct: 244 LAIGITANFVNGRTVEETQ 262

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSL 100
           DIV++GAG  G A A  L++L  G   L++E+       G ++
Sbjct: 38  DIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATI 80

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG 97
           ++IVGAG+ G   A  L+R   G L +   D     G
Sbjct: 3  QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSG 40

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 9/24 (37%), Positives = 19/24 (79%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLG 81
          ++ +V++G+G+ GL++A+ L R G
Sbjct: 6  QKRVVVLGSGVIGLSSALILARKG 29

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          + V++G GI G A A  L +    + + E       G T+
Sbjct: 19 EAVVIGGGIIGSAIAYYLAKENKNTALFESGTM--GGRTT 56

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQ----ADSLRTGGTS 99
          +V++GAG+ GL+TA+ +       L        AD      T+
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTT 45

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 38 TRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRL 80
             R +  R      E    + D+VIVGAG AGL+ A  L++L
Sbjct: 15 IYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQL 57

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 39.4 bits (91), Expect = 9e-04
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 16/131 (12%)

Query: 1   MAPLCLNSSFLPSSLHYLHSRSFHC------PQSSSGFCF-QTRTRSRSKAIRLSIAKAE 53
           M+     +S   S LH   +   HC       +  S F F   R  + S+A+     K  
Sbjct: 1   MSATSTATSTSASQLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDL 60

Query: 54  ADVRKEDIVIVGAGIAGLATAVSL--QRLGIGSLVIEQADSLRTGGTSLTLFKN------ 105
                 D++IVGAG +GL+ A  +   R  +   +IE + +   G        +      
Sbjct: 61  DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRK 120

Query: 106 -GWSVLDALGV 115
                L  L +
Sbjct: 121 PAHLFLQELEI 131

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 52 AEADVRKEDIVIVGAGIAGLATAVSLQRLG-IGSLVI 87
          +E    + D+VIVGAG  G   A++L++ G  G +++
Sbjct: 3  SEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLV 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.97
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.95
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.94
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.94
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.94
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.94
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.93
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.93
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.92
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.92
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.91
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.91
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.91
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.91
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.91
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.91
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.91
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.9
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.9
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.9
3atr_A	453	Conserved archaeal protein; saturating double bond	99.9
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.84
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.82
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.81
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.81
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.8
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.77
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.69
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.68
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.67
3dme_A	369	Conserved exported protein; structural genomics, P	99.65
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.65
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.63
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.63
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.63
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.63
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.62
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.62
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.62
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.62
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.61
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.61
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.6
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.6
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.6
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.58
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.57
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.56
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.56
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.55
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.54
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.54
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.54
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.53
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.53
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.52
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.52
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.51
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.5
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.49
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.49
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.49
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.48
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.47
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.47
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.46
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.45
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.43
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.43
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.43
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.42
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.41
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.4
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.39
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.39
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.38
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.37
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.37
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.35
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.35
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.34
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.34
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.34
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.33
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.32
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.31
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.31
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.31
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.29
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.29
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.29
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.29
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.29
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.28
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.28
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.28
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.28
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.27
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.27
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.27
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.27
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.26
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.25
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.25
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.24
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.23
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.23
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.22
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.21
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.18
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.16
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.15
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.15
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.14
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.12
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.12
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.12
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.11
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.11
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.1
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.1
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.1
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.09
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.09
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.09
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.09
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.08
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.08
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.08
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.06
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.06
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.06
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.04
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.04
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.03
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.02
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.02
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.02
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.02
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.01
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.01
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.99
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.99
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.99
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.98
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.98
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.98
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.98
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.97
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.97
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.97
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.97
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.95
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.95
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.94
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.93
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.93
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.93
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.93
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.92
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.92
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.92
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.92
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.91
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.9
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.9
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.9
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.9
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.89
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.89
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.89
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.89
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.89
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.88
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.88
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.88
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.87
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.87
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.87
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.86
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.86
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.86
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.85
4dna_A	463	Probable glutathione reductase; structural genomic	98.85
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.84
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.84
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.84
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.84
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.83
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.83
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.82
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.82
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.82
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.81
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.8
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.8
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.79
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.79
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.79
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.78
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.78
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.78
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.78
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.78
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.77
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.76
4dna_A	463	Probable glutathione reductase; structural genomic	98.76
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.76
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.76
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.76
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.75
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.75
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.74
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.74
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.74
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.73
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.72
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.72
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.71
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.69
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.68
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.67
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.67
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.67
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.66
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.66
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.66
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.64
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.64
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.64
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.64
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.64
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.63
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.62
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.62
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.61
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.6
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.58
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.56
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.55
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.53
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.53
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.52
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.52
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.52
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.51
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.51
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.47
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.47
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.47
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.46
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.45
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.45
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.43
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.42
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.4
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.37
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.36
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.33
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.33
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.32
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.3
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.3
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.29
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.27
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.25
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.19
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.18
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.15
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.11
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.11
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.06
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.05
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.04
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.02
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.98
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.96
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.82
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.82
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.82
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.8
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.79
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.72
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.71
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.68
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.66
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.63
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.63
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.61
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.57
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.5
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.48
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.42
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.29
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.19
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.13
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.09
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.05
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.95
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.86
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.83
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.59
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.57
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.56
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.54
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.49
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.48
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.38
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.32
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.3
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.29
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.29
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.14
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.06
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.01
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.0
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.99
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.97
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.95
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.94
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.92
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.9
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.89
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.87
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.86
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.84
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.82
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.79
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.78
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.75
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.73
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.71
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.71
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.7
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.7
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.68
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.66
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.64
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.6
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.59
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.59
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.56
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.51
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.45
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.45
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.45
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.44
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.4
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.4
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.37
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.33
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.33
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.32
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.32
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.32
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.31
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.3
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.26
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.26
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.25
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.24
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.24
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.23
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.18
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.18
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.14
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.1
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	95.08
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.06
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.06
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.05
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.04
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.03
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.01
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.0
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.99
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.98
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.91
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.9
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.9
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.9
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.88
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.88
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.87
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.86
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.85
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.84
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.8
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.78
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.73
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.7
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.68
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	94.67
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.67
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.67
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.66
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.63
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.61
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.6
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.59
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.57
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.56
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.55
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.5
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.49
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.47
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.46
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	94.46
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.45
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.43
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.42
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.42
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.39
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.38
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.34
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.34
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.33
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.32
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.32
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.32
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.27
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.25
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.25
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.25
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	94.24
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	94.21
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.2
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.19
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.19
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.17
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.16
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	94.15
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.14
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	94.09
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	94.08
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.08
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	94.07
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.06
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.05
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	94.03
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.02
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.01
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.99
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.98
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	93.98
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.95
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.91
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	93.9
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.89
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	93.88
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.88
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	93.86
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.84
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.82
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.82
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.81
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.8
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.78
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.76
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	93.75
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	93.71
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.66
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	93.63
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	93.62
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.55
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	93.55
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	93.53
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	93.46
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	93.42
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	93.39
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	93.35
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.32
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	93.31
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	93.31
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	93.31
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	93.27
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	93.27
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	93.16
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.16
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	93.1
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	93.09
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	93.09
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.08
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	93.07
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.06
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.01
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.01
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	92.99
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.98
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.95

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.97  E-value=1.1e-29  Score=225.62  Aligned_cols=224  Identities=23%  Similarity=0.436  Sum_probs=184.1

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ...++||+|||||++||++|+.|+++|++|+|+||.+.+...++++.+.+++.+.++.+|+++.+.........+.++..
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   99 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDF   99 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEET
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEEC
Confidence            34579999999999999999999999999999999998877889999999999999999999999888888888888887


Q ss_pred             C-CceEEEecCCCC--CCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          135 D-GRELRSFGFKDE--DASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       135 ~-~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      . +..+..++....  ..+...+.++|..|.+.|.+.+..++|+++++|++++.++++ +.|.+.+|++++||+||+|||
T Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A          100 RSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADG-VTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             TTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTE-EEEEETTSCEEEESEEEECCC
T ss_pred             CCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCc-EEEEEcCCCEEeeCEEEECCC
Confidence            6 776666654321  112446678999999999988855899999999999998887 558999999999999999999


Q ss_pred             CChHhhhhc-CCC-CCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCCC
Q 022277          212 IRSPIAKWI-GFS-EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNPT  279 (300)
Q Consensus       212 ~~s~~r~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  279 (300)
                      .+|.+|+.+ +.. .+.+.++.++++.++.+...+....+..+++++++++++|+++++..|++.+..+.
T Consensus       179 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  248 (407)
T 3rp8_A          179 SHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPA  248 (407)
T ss_dssp             TTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCT
T ss_pred             cChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCc
Confidence            999999999 775 66777888888877765544445566778899999999999999998888876544

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.95  E-value=1.1e-25  Score=197.89  Aligned_cols=212  Identities=22%  Similarity=0.316  Sum_probs=169.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+.+...+.+..+.+.+.+.++.+|+++.+.........+.+... +
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-g   88 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH-N   88 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET-T
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC-C
Confidence            468999999999999999999999999999999988877788999999999999999999998877777777777776 6


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      ..+..++..    +.....++|..+.+.|.+.+  .|++++++++|++++.  ++  .|++.+|++++||+||+|||.+|
T Consensus        89 ~~~~~~~~~----~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~--~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A           89 KSVSKETFN----GLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG--RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             EEEEEECGG----GCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT--EEEETTSCEEECSEEEECCCTTC
T ss_pred             ceeeeccCC----CCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC--EEEECCCCEEEcCEEEECCCccH
Confidence            655544432    22357889999999888776  4899999999999987  33  48888888899999999999999


Q ss_pred             HhhhhcCCC-CCccccceEEEEEeeCC----CCCCCCCceEE--EEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          215 PIAKWIGFS-EPKYVGHCAYRGLGYYP----NGQPFEPKLNY--IYGRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       215 ~~r~~~g~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      .+|+.++.. .+.+.++.++++.++..    ...........  +++++++++++|+++++..|++.+..
T Consensus       161 ~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  230 (379)
T 3alj_A          161 KVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPA  230 (379)
T ss_dssp             HHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECCSSSCCEEEEEECSSSEEEEEEEECT
T ss_pred             HHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceEECCCCEEEEEECCCCcEEEEEEecC
Confidence            999999753 34556777777766653    11111112222  56788899999999999888777754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.94  E-value=1.1e-25  Score=199.39  Aligned_cols=214  Identities=20%  Similarity=0.237  Sum_probs=166.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+.+...+++..+.+.+.+.++.+|+++.+.........+.++...+
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g   84 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDG   84 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCC
Confidence            45899999999999999999999999999999998776778889999999999999999988877666666677766666


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCC---CCeEEeCCeEEEEEEcCCceE-EEEEcCCcEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLP---PESVQFSSELAKIETSGNGVT-ILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~---g~~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      .....++............+++..+.+.|.+.+.   |++++++++|++++.+++++. .|++.+|++++||+||+|||.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~  164 (399)
T 2x3n_A           85 ELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGI  164 (399)
T ss_dssp             EEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCT
T ss_pred             CEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCC
Confidence            5555555433222334567899999999988772   789999999999998887752 588999988999999999999


Q ss_pred             ChHhhhhcCCCC-Cc--cccc--eEEEEEeeCCCCCCCCCceEEEEeC-CeEEEEEEcCCCeEEEEEEE
Q 022277          213 RSPIAKWIGFSE-PK--YVGH--CAYRGLGYYPNGQPFEPKLNYIYGR-GVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       213 ~s~~r~~~g~~~-~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~  275 (300)
                      +|.+|+.+|... +.  +.++  .++.+.++.+  .+..  . .++++ +++++++|++++.+.|.+.+
T Consensus       165 ~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~--~~~~--~-~~~~~~~~~~~~~p~~~~~~~~~~~~  228 (399)
T 2x3n_A          165 ASYVRRRLLDIDVERRPYPSPMLVGTFALAPCV--AERN--R-LYVDSQGGLAYFYPIGFDRARLVVSF  228 (399)
T ss_dssp             TCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHH--HHCE--E-EEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             ChHHHHHhCCCccccCCCCCCceEEEEEEecCC--CCCc--c-EEEcCCCcEEEEEEcCCCEEEEEEEe
Confidence            999999998654 33  5566  6666544322  1211  3 56677 88999999999887776644

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.94  E-value=1.4e-24  Score=197.04  Aligned_cols=210  Identities=20%  Similarity=0.237  Sum_probs=156.0

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ....+||+|||||++||++|+.|+++|++|+||||.+.+...+++..+.+++++.++++|+++.+... .......+   
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~---   83 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHF---   83 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEE---
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-cccccccc---
Confidence            34679999999999999999999999999999999998877888999999999999999999887654 22111111   


Q ss_pred             CCceEEEecCCCCCC-CcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCc---EEEcCEEEE
Q 022277          135 DGRELRSFGFKDEDA-SQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGT---RIYANIVIG  208 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~---~~~ad~vV~  208 (300)
                      .+.   .+++..... ......+.+..+.+.|.+.+  .|++|+++++|++++++++++. |++.++.   +++||+||+
T Consensus        84 ~~~---~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~~a~~vVg  159 (500)
T 2qa1_A           84 GGL---PIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVT-VEVRGPEGKHTLRAAYLVG  159 (500)
T ss_dssp             TTE---EEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEE-EEEEETTEEEEEEESEEEE
T ss_pred             cce---ecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEE-EEEEcCCCCEEEEeCEEEE
Confidence            111   122221111 12346788999999888776  4899999999999999888744 7787764   799999999


Q ss_pred             cCCCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277          209 CDGIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       209 A~G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  275 (300)
                      |||.+|.+|+.+|+..+... .+..+.+.+..+.   .+....+++.++++++++|++++.+++.+..
T Consensus       160 ADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~  224 (500)
T 2qa1_A          160 CDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVE---LQPRMIGETLPGGMVMVGPLPGGITRIIVCE  224 (500)
T ss_dssp             CCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCC---CCCEEEEEEETTEEEEEEEETTTEEEEEEEE
T ss_pred             CCCcchHHHHHcCCCcCCCccceEEEEEEEEeCC---CCCceEEEECCCcEEEEEEcCCCEEEEEEEc
Confidence            99999999999998766443 3444544444432   1222455677888999999999876655544

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.94  E-value=2.4e-24  Score=190.54  Aligned_cols=201  Identities=23%  Similarity=0.246  Sum_probs=156.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-CCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC-
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE-  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~-~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-  134 (300)
                      ..+||+|||||++||++|+.|++.|++|+|+|+.+.+ ...+.++.+.+++.+.++.+|+.+  ...........+... 
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~   81 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL--DSISVPSSSMEYVDAL   81 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG--GGTCBCCCEEEEEETT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc--ccccccccceEEEecC
Confidence            5689999999999999999999999999999999875 345778889999999999999987  344455556666665 


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      .+..+...+..       ...+.+..+.+.|.+.+++++|+++++|++++.++++ +.|++.+|+++++|+||+|||.+|
T Consensus        82 ~g~~~~~~~~~-------~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A           82 TGERVGSVPAD-------WRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-VQMRFSDGTKAEANWVIGADGGAS  153 (397)
T ss_dssp             TCCEEEEEECC-------CCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-EEEEETTSCEEEESEEEECCCTTC
T ss_pred             CCCccccccCc-------ccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE-EEEEECCCCEEECCEEEECCCcch
Confidence            66655444321       1246778888888888788999999999999988777 458899998999999999999999


Q ss_pred             HhhhhcCCCCCccccceEEEEEeeCCCCCC-----CCCceEEEEeCCeEEEEEEcCCC
Q 022277          215 PIAKWIGFSEPKYVGHCAYRGLGYYPNGQP-----FEPKLNYIYGRGVRAGYVPVSPT  267 (300)
Q Consensus       215 ~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~  267 (300)
                      .+|+.++...+.+.++.+|++.++.....+     +.....++++++.++.++|++++
T Consensus       154 ~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (397)
T 2vou_A          154 VVRKRLLGIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGR  211 (397)
T ss_dssp             HHHHHHHCCCCEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEETTEEEEEEEECCS
T ss_pred             hHHHHhccCCCCccceEEEEEEeeccccChhhhhhhcCceeEEecCCCEEEEEECCCC
Confidence            999999722466667778877665321111     11345566788888888998864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.94  E-value=1.7e-24  Score=196.46  Aligned_cols=208  Identities=20%  Similarity=0.202  Sum_probs=156.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++||++|+.|+++|++|+||||.+.+...+++..+.++++++++++|+++.+... .......+   .+
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~---~~   86 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV-ETSTQGHF---GG   86 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC-CEESEEEE---TT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc-ccccccee---cc
Confidence            578999999999999999999999999999999998877888999999999999999999887654 22111111   11


Q ss_pred             ceEEEecCCCCC-CCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCc---EEEcCEEEEcC
Q 022277          137 RELRSFGFKDED-ASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGT---RIYANIVIGCD  210 (300)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~---~~~ad~vV~A~  210 (300)
                      .   .+++.... .......+.+..+.+.|.+.+  .|++|+++++|++++++++++. |++.++.   +++||+||+||
T Consensus        87 ~---~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~~a~~vVgAD  162 (499)
T 2qa2_A           87 R---PVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVV-VEVEGPDGPRSLTTRYVVGCD  162 (499)
T ss_dssp             E---EEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEE-EEEECSSCEEEEEEEEEEECC
T ss_pred             e---ecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEcCCCcEEEEeCEEEEcc
Confidence            1   12222111 122346788999999988776  4899999999999999888744 8887764   79999999999


Q ss_pred             CCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEE
Q 022277          211 GIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICH  275 (300)
Q Consensus       211 G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  275 (300)
                      |.+|.+|+.+|+..+... .+..+.+.+..+.  + +....+++.++++++++|++++.+++.+..
T Consensus       163 G~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~--~-~~~~~~~~~~~g~~~~~P~~~g~~~~~~~~  225 (499)
T 2qa2_A          163 GGRSTVRKAAGFDFPGTSASREMFLADIRGCE--I-TPRPIGETVPLGMVMSAPLGDGVDRIIVCE  225 (499)
T ss_dssp             CTTCHHHHHTTCCCCEECCCCCEEEEEEESCC--C-CCEEEEEEETTEEEEEEECSSSCEEEEEEE
T ss_pred             CcccHHHHHcCCCCCCCCCccEEEEEEEEECC--C-CcceEEEECCCeEEEEEEcCCCEEEEEEEe
Confidence            999999999988765443 3344544444432  1 222455677888999999999876655554

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.93  E-value=3.8e-24  Score=189.37  Aligned_cols=220  Identities=22%  Similarity=0.232  Sum_probs=164.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--CCceeeEch-hHHHHHHHcCCcHHHHhccccccceEEE
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--GGTSLTLFK-NGWSVLDALGVGSDLRSQFLEIKGMAVK  132 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--~g~~~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~  132 (300)
                      +..+||+|||||++|+++|+.|++.|++|+|+||.+.+..  .|.++.+.+ ...+.++.+|+++.+......... .++
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~  102 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGV-NIA  102 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCE-EEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccce-EEE
Confidence            3568999999999999999999999999999999986542  455666665 568899999999988765555444 556


Q ss_pred             cCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      ...+........... .......+.|..|.+.|.+.+.+++|+++++|++++.++++ +.|++.+|++++||+||+|||.
T Consensus       103 ~~~g~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~~~g~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          103 DEKGNILSTKNVKPE-NRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK-WTLTFENKPSETADLVILANGG  180 (398)
T ss_dssp             CSSSEEEEECCCGGG-TTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS-EEEEETTSCCEEESEEEECSCT
T ss_pred             CCCCCchhhcccccc-CCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE-EEEEECCCcEEecCEEEECCCc
Confidence            655654433310111 11233468999999999998877899999999999988776 5588999988999999999999


Q ss_pred             ChHhhhhcCCCCCccccceEEEEEeeCCCC-CC-----CCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          213 RSPIAKWIGFSEPKYVGHCAYRGLGYYPNG-QP-----FEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       213 ~s~~r~~~g~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      +|.+|+.++...+.+.++.++++.+..... .+     ......++++++..++++|.+++.+.|++.+..+
T Consensus       181 ~S~vR~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  252 (398)
T 2xdo_A          181 MSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTP  252 (398)
T ss_dssp             TCSCCTTTCCCCCEEEEEEEEEEEESSHHHHSHHHHHHHTTSEEEEEETTEEEEEEEEETTEEEEEEEEECC
T ss_pred             chhHHhhccCCCceEcceEEEEEEeCchhccCchhHhhcCCceEEEecCCCeEEEEeCCCCcEEEEEEEecC
Confidence            999999997667777787777765542110 01     1222345567888888899999988887776544

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.93  E-value=2.7e-24  Score=197.31  Aligned_cols=221  Identities=18%  Similarity=0.186  Sum_probs=158.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccce------E
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGM------A  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~------~  130 (300)
                      ..+||+|||||++||++|+.|+++|++|+||||.+.+...+++..+.+++.+.++++|+++.+..........      .
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   83 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRL   83 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEE
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeE
Confidence            5689999999999999999999999999999999988888889999999999999999999988766554332      3


Q ss_pred             EEcCCCceEEEecCC--------CCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC----ceEEEEEc
Q 022277          131 VKSEDGRELRSFGFK--------DEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN----GVTILELV  196 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~----~~~~v~~~  196 (300)
                      .....+..+..+...        ....+.....+++..+.+.|.+.+  .|++|+++++|++++.+++    + +.+.+.
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~-v~v~~~  162 (535)
T 3ihg_A           84 AESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAG-VTARLA  162 (535)
T ss_dssp             ESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSE-EEEEEE
T ss_pred             EeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCcccc-EEEEEE
Confidence            333445544422111        111233356788999999988777  4899999999999999877    6 447777


Q ss_pred             CC---cEEEcCEEEEcCCCChHhhhhcCCCCCccccceEEE-EEeeCCCCCC--C-CCceEEEEeCCeEEEEEEcCCCeE
Q 022277          197 NG---TRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYR-GLGYYPNGQP--F-EPKLNYIYGRGVRAGYVPVSPTKV  269 (300)
Q Consensus       197 ~g---~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~p~~~~~~  269 (300)
                      ++   .+++||+||+|||.+|.+|+.+|+..+.......+. .....+....  . ......+..++...+++|++++..
T Consensus       163 ~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~  242 (535)
T 3ihg_A          163 GPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTFGPTDRPDR  242 (535)
T ss_dssp             ETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEECCGGGTSCTTCCEEEEEECSSCEEEEEECSSTTE
T ss_pred             cCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEeccChhhccCCceEEEEEECCCceEEEEEecCCCE
Confidence            76   689999999999999999999988755443222111 1122211111  1 122344556777888899997555


Q ss_pred             EEEEEEcCC
Q 022277          270 YWFICHNNP  278 (300)
Q Consensus       270 ~~~~~~~~~  278 (300)
                      +.+++..++
T Consensus       243 ~~~~~~~~~  251 (535)
T 3ihg_A          243 HTLFVEYDP  251 (535)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEeeCc
Confidence            444444333

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.92  E-value=3.4e-23  Score=183.95  Aligned_cols=206  Identities=23%  Similarity=0.327  Sum_probs=156.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+|||||++||++|+.|++.|++ |+|+||.+.+...+.++.+.+++.+.|+.+|+++.+.........+.+....
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~   82 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQS   82 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCC
Confidence            458999999999999999999999999 9999999988778889999999999999999999888776666677777766


Q ss_pred             CceEEEecCCCC-CCCcceeeecHHHHHHHHHhcCC---C-CeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCE
Q 022277          136 GRELRSFGFKDE-DASQEVRAVERRILLETLANQLP---P-ESVQFSSELAKIETSGNGVTILELVN---G--TRIYANI  205 (300)
Q Consensus       136 ~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~~---g-~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~  205 (300)
                      +..+...+.... ........+.|..|.+.|.+.+.   + ++|+++++|++++. +++ +.|.+.+   |  .+++||+
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           83 GATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-RVLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             SCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-EEEEEEEETTSCEEEEEESE
T ss_pred             CCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-cEEEEecCCCCCceEEecCE
Confidence            765544332111 11233467899999998887762   4 58999999999988 666 4477665   6  4799999


Q ss_pred             EEEcCCCChHhhhhcCCC--CCccccceEEEEEeeCCCCCCCCCceEEEEeC--CeEEEEEEcCC
Q 022277          206 VIGCDGIRSPIAKWIGFS--EPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGR--GVRAGYVPVSP  266 (300)
Q Consensus       206 vV~A~G~~s~~r~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~  266 (300)
                      ||+|||.+|.+|+.++..  .+.+.+...|++..+.+..  ......++++.  +.+++++|+++
T Consensus       161 vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~  223 (410)
T 3c96_A          161 LVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRF--LDGKTMIVANDEHWSRLVAYPISA  223 (410)
T ss_dssp             EEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCC--TTSSEEEEEECTTCCEEEEEECCH
T ss_pred             EEECCCccchhHHHhcCCCCCCCcCCeeEEEeecccccc--cCCCeEEEecCCCCcEEEEEecCC
Confidence            999999999999999543  3556677777766654322  12233344553  66788999863

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.91  E-value=3e-23  Score=183.28  Aligned_cols=217  Identities=17%  Similarity=0.193  Sum_probs=147.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc--CCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL--RTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~--~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.+.+  ....++..+.+.+.+.++.+|+++.+.........+.+....
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~   81 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence            479999999999999999999999999999998753  122233358899999999999999888766666666665432


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE-cCCc--EEEcCEEEEcC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIVIGCD  210 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~vV~A~  210 (300)
                      .  ...+++.....+.....+.+..+.+.|.+.+  .|++++++++|++++.+++..+.|.+ .+|+  +++||+||+||
T Consensus        82 ~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~Ad  159 (394)
T 1k0i_A           82 Q--RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD  159 (394)
T ss_dssp             E--EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECC
T ss_pred             c--eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECC
Confidence            2  1222222111123455667777777777655  48999999999999876433244777 6786  79999999999


Q ss_pred             CCChHhhhhcCCC-CCccccc--eEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          211 GIRSPIAKWIGFS-EPKYVGH--CAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       211 G~~s~~r~~~g~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      |.+|.+|+.++.. .+.+.+.  ..+.+......  +......+...+++++++.|..++...|++.+...
T Consensus       160 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  228 (394)
T 1k0i_A          160 GFHGISRQSIPAERLKVFERVYPFGWLGLLADTP--PVSHELIYANHPRGFALCSQRSATRSQYYVQVPLS  228 (394)
T ss_dssp             CTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSC--CSCSSCEEECCTTCCEEEEEEETTEEEEEEEECTT
T ss_pred             CCCcHHHHhcCccccccccccccceeEEEecCCC--CCccceEEEEcCCceEEEEecCCCcEEEEEEeCCC
Confidence            9999999999754 2333332  23333332111  11112223334666776777777777766665543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.91  E-value=4.1e-24  Score=196.55  Aligned_cols=213  Identities=20%  Similarity=0.190  Sum_probs=145.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      +.+||+|||||++||++|+.|+++|++|+||||.+.+...+++..+.+.+.++++.+|+++.+...........+   .+
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~---~~  124 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPF---AG  124 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCB---TT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCcee---CC
Confidence            468999999999999999999999999999999998888889999999999999999999988765544321100   11


Q ss_pred             ceEEEecCCCCC-CCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE--cCC-cEEEcCEEEEcC
Q 022277          137 RELRSFGFKDED-ASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL--VNG-TRIYANIVIGCD  210 (300)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~--~~g-~~~~ad~vV~A~  210 (300)
                      .....+++.... .......+.+..+.+.|.+.+  .|++|+++++|++++.+++++. |++  .+| ++++||+||+||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~-v~~~~~~G~~~~~a~~vV~AD  203 (570)
T 3fmw_A          125 IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVE-VTVAGPSGPYPVRARYGVGCD  203 (570)
T ss_dssp             BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEE-EEEEETTEEEEEEESEEEECS
T ss_pred             cccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEE-EEEEeCCCcEEEEeCEEEEcC
Confidence            100011111111 122345688999998888776  3889999999999998887744 666  677 689999999999


Q ss_pred             CCChHhhhhcCCCCCccc-cceEEEEEeeCCCCCCCCCceEEEEeCCeEEEE-EEcCCCeE-EEEEEEc
Q 022277          211 GIRSPIAKWIGFSEPKYV-GHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGY-VPVSPTKV-YWFICHN  276 (300)
Q Consensus       211 G~~s~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~-~~~~~~~  276 (300)
                      |.+|.+|+.+|+..+... .+..+.  +.+....+.. .+.+...+.+++++ +|++++.. ++++...
T Consensus       204 G~~S~vR~~lGi~~~~~~~~~~~~~--~~v~~~~~~~-~~~~~~~~~G~~~~~~P~~~g~~~~i~~~~~  269 (570)
T 3fmw_A          204 GGRSTVRRLAADRFPGTEATVRALI--GYVTTPEREV-PRRWERTPDGILVLAFPPEGGLGPGWSSSST  269 (570)
T ss_dssp             CSSCHHHHHTTCCCCCCCCCEEEEE--EECCCCSCSS-CCCCCCCCSSCEEECCCC------CEEEEEE
T ss_pred             CCCchHHHHcCCCCccceeeeEEEE--EEEEecCCCc-ceEEEecCCEEEEEEeecCCCeEEEEEEEeC
Confidence            999999999988766543 333333  3333332221 12222345555656 79998876 5555444

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.91  E-value=9.4e-23  Score=187.30  Aligned_cols=214  Identities=20%  Similarity=0.253  Sum_probs=153.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccc---eEEE-
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKG---MAVK-  132 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~~~-  132 (300)
                      ..+||+|||||++||++|+.|+++|++|+||||.+.+...+++..+.+++.+.++++|+.+.+.........   ..+. 
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~  104 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVT  104 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEES
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEec
Confidence            458999999999999999999999999999999998877888999999999999999999988776555432   2222 


Q ss_pred             cCCCceEEEecCCCC-------CCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cE
Q 022277          133 SEDGRELRSFGFKDE-------DASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TR  200 (300)
Q Consensus       133 ~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~  200 (300)
                      ...+..+..+++...       ..+.....+.+..+.+.|.+.+... |+++++|++++++++++. |++.+   |  .+
T Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-v~~~~~v~~~~~~~~~v~-v~~~~~~~G~~~~  182 (549)
T 2r0c_A          105 RVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-LRTRSRLDSFEQRDDHVR-ATITDLRTGATRA  182 (549)
T ss_dssp             SBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-EECSEEEEEEEECSSCEE-EEEEETTTCCEEE
T ss_pred             cCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-cccCcEEEEEEEeCCEEE-EEEEECCCCCEEE
Confidence            234555544444221       1223456788999999998877444 999999999999888744 66655   6  47


Q ss_pred             EEcCEEEEcCCCChHhhhhcCCCCCcccc-ceEEEEEeeCCCC----CCCCCceEEEEeCC-eEEEEEEcCCCeEEEE
Q 022277          201 IYANIVIGCDGIRSPIAKWIGFSEPKYVG-HCAYRGLGYYPNG----QPFEPKLNYIYGRG-VRAGYVPVSPTKVYWF  272 (300)
Q Consensus       201 ~~ad~vV~A~G~~s~~r~~~g~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~  272 (300)
                      ++||+||+|||.+|.+|+.+|+..+.... ...+...+..+..    ........++++++ .+.+++|++++..+.+
T Consensus       183 i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~  260 (549)
T 2r0c_A          183 VHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRFPLRALDGRGLYRL  260 (549)
T ss_dssp             EEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHHHHHGGGCCSEEEEEEETTEEEEEEESSSSSEEEE
T ss_pred             EEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchHHhcCCCCceEEEEECCCCcEEEEEEECCCcEEEE
Confidence            99999999999999999999887654332 2233333333210    00122334444566 7888999987554433

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.91  E-value=7.3e-23  Score=191.49  Aligned_cols=220  Identities=18%  Similarity=0.182  Sum_probs=158.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-----cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-----LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAV  131 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-----~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  131 (300)
                      ..+||+|||||++||++|+.|++     .|++|+||||.+.+...+++..+.++++++|+++|+++.+.........+.+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~   86 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIAL   86 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEE
Confidence            35899999999999999999999     9999999999988877899999999999999999999999887777777777


Q ss_pred             EcCC--CceEE--EecCCC-CCCCcceeeecHHHHHHHHHhcCC--C---CeEEeCCeEEEEEEcC--------CceEEE
Q 022277          132 KSED--GRELR--SFGFKD-EDASQEVRAVERRILLETLANQLP--P---ESVQFSSELAKIETSG--------NGVTIL  193 (300)
Q Consensus       132 ~~~~--~~~~~--~~~~~~-~~~~~~~~~i~~~~l~~~l~~~~~--g---~~i~~~~~v~~i~~~~--------~~~~~v  193 (300)
                      +...  +....  .++... .........+++..+.+.|.+.+.  +   ++|+++++|++++.++        ++ +.|
T Consensus        87 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~-V~v  165 (665)
T 1pn0_A           87 YNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYP-VTM  165 (665)
T ss_dssp             EEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCC-EEE
T ss_pred             EeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCC-EEE
Confidence            6643  32221  122111 112334567889999998887772  3   8999999999998865        24 335


Q ss_pred             EEc------------------------------------------CC--cEEEcCEEEEcCCCChHhhhhcCCCCCcccc
Q 022277          194 ELV------------------------------------------NG--TRIYANIVIGCDGIRSPIAKWIGFSEPKYVG  229 (300)
Q Consensus       194 ~~~------------------------------------------~g--~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~  229 (300)
                      .+.                                          +|  ++++||+||+|||++|.+|+.+|+..+....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g~~~  245 (665)
T 1pn0_A          166 TLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQT  245 (665)
T ss_dssp             EEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEEEEE
T ss_pred             EEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCCCCc
Confidence            443                                          35  4799999999999999999999987654433


Q ss_pred             ceEEEEEeeC--CCCCCCCCceEE-EEeCCeEEEEEEcCCCeEEEEEEEcCC
Q 022277          230 HCAYRGLGYY--PNGQPFEPKLNY-IYGRGVRAGYVPVSPTKVYWFICHNNP  278 (300)
Q Consensus       230 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~  278 (300)
                      ...| ++++.  ....+....... +..+.++++++|++++.+++++.+...
T Consensus       246 ~~~~-~v~d~~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~  296 (665)
T 1pn0_A          246 DYIW-GVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQAR  296 (665)
T ss_dssp             EEEE-EEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC-
T ss_pred             cEEE-EEEEEEECCCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCCc
Confidence            3333 33332  112222122222 223577888999999977766665543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.91  E-value=1.2e-22  Score=179.13  Aligned_cols=219  Identities=17%  Similarity=0.145  Sum_probs=147.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC-CceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG-GTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~-g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..|||+||||||+|+++|+.|+++|++|+|+||++.++.. ..+..+.+   ..++.+++............+..++.++
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~   79 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSK---GILNEADIKADRSFIANEVKGARIYGPS   79 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEET---HHHHHTTCCCCTTTEEEEESEEEEECTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCH---HHHHHcCCCchhhhhhcccceEEEEeCC
Confidence            4699999999999999999999999999999998876432 22344554   3566777654443344455566677665


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc-CC--cEEEcCEEEEcC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV-NG--TRIYANIVIGCD  210 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~-~g--~~~~ad~vV~A~  210 (300)
                      +.....+.... ......+.++|..+.+.|.+.+  .|++++++++|+++..+++.+..+... ++  .+++||+||+||
T Consensus        80 ~~~~~~~~~~~-~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAd  158 (397)
T 3oz2_A           80 EKRPIILQSEK-AGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAAD  158 (397)
T ss_dssp             CSSCEEEECSS-SSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CceEeeccccc-cCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCC
Confidence            55433333221 2234456789999999988776  489999999999999888876555443 33  368999999999


Q ss_pred             CCChHhhhhcCCCCCccccce-EEEEEeeCCCCCCCCCceEEEEe---CCeEEEEEEcCCCeEEEEEEEcCCC
Q 022277          211 GIRSPIAKWIGFSEPKYVGHC-AYRGLGYYPNGQPFEPKLNYIYG---RGVRAGYVPVSPTKVYWFICHNNPT  279 (300)
Q Consensus       211 G~~s~~r~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~  279 (300)
                      |.+|.+|+.+|...+...... ..............+....++++   ++++.|++|..++...+.+....+.
T Consensus       159 G~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~  231 (397)
T 3oz2_A          159 GFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINW  231 (397)
T ss_dssp             CTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTT
T ss_pred             ccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeeeccCCCceEEEeecccceeEEEEeeccch
Confidence            999999999987644332221 11111111111122233344443   5789999999999887666655543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.91  E-value=3.1e-22  Score=178.29  Aligned_cols=218  Identities=21%  Similarity=0.233  Sum_probs=155.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhcccccc-ceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK-GMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~  135 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+.+. .+.+..+.+.....++.+|+++.+........ +..+..  
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~-~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--   80 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR-FVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVR--   80 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEE--
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC-CcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEe--
Confidence            45899999999999999999999999999999997654 35566788999999999999988876544332 333332  


Q ss_pred             CceEEEecCCCC--CCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCce-EEEEEcCCc--EEEcCEEEE
Q 022277          136 GRELRSFGFKDE--DASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGV-TILELVNGT--RIYANIVIG  208 (300)
Q Consensus       136 ~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~-~~v~~~~g~--~~~ad~vV~  208 (300)
                      +.....+++...  ......+.+++..+.+.|.+.+  .|++++++++|++++.++++. +.+.+.+|+  +++||+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A           81 GKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             TTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             CCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEE
Confidence            233333444322  2234456799999999988776  489999999999999887653 456667887  699999999


Q ss_pred             cCCCChHhhhhcCCCCCcc-ccceEEEEEeeCCCC-CCCC-CceEEEE---eCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          209 CDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYPNG-QPFE-PKLNYIY---GRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       209 A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      |+|.+|.+++.+|...+.. ....++......... ..+. ....+.+   ..++++|++|.++++..+.+....
T Consensus       161 A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~  235 (421)
T 3nix_A          161 ASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEP  235 (421)
T ss_dssp             CCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEECH
T ss_pred             CCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEecH
Confidence            9999999999998765433 233333333332221 1121 2222333   367899999999998877776654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.91  E-value=4.1e-22  Score=181.71  Aligned_cols=220  Identities=16%  Similarity=0.125  Sum_probs=153.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHH-HHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW-SVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~-~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+.+. .+.+..+.+... .+++.+|+++.+................
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~   84 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR-HQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWG   84 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCC-CCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEec
Confidence            45899999999999999999999999999999997543 234455666655 4889999998877655444333222211


Q ss_pred             C---ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEE--EcCCc--EEEcCEE
Q 022277          136 G---RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILE--LVNGT--RIYANIV  206 (300)
Q Consensus       136 ~---~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~--~~~g~--~~~ad~v  206 (300)
                      .   .....+...........+.+++..+.+.|.+.+  .|++++++++|+++..+++.+..|.  ..+|+  +++||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~V  164 (512)
T 3e1t_A           85 KEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFI  164 (512)
T ss_dssp             SCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEE
Confidence            1   111122222222334466789999999988776  5899999999999999887654444  44574  7999999


Q ss_pred             EEcCCCChHhhhhcCCCC-CccccceEEEEEeeCCC--CCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          207 IGCDGIRSPIAKWIGFSE-PKYVGHCAYRGLGYYPN--GQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      |+|+|.+|.+|+.+|... ..+....++.+......  ..+........+.+++++|++|++++...+.+++..
T Consensus       165 I~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Pl~~~~~~vg~~~~~  238 (512)
T 3e1t_A          165 VDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSR  238 (512)
T ss_dssp             EECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCSTTCTTSEEEEEETTEEEEEEECSSSEEEEEEEEEH
T ss_pred             EECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCCCCCcCceEEEEeCCceEEEEEeCCCeEEEEEEecH
Confidence            999999999999997542 22334555555554322  223333344556678899999999998877666653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.90  E-value=2.4e-22  Score=185.26  Aligned_cols=221  Identities=16%  Similarity=0.190  Sum_probs=153.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhcccccc-ceEEEcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIK-GMAVKSE  134 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~  134 (300)
                      +..+||+|||||++|+++|+.|+++|++|+|+|+.+.+. .+.+..+.+.+...++.+|+++.+........ ...+...
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~-~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~   99 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR-YRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWG   99 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC-CCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC-CceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEec
Confidence            356899999999999999999999999999999997553 35567888999999999999988766543322 2222222


Q ss_pred             CCceEEEecCCCCC----CCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc-CC--cEEEcCE
Q 022277          135 DGRELRSFGFKDED----ASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV-NG--TRIYANI  205 (300)
Q Consensus       135 ~~~~~~~~~~~~~~----~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~-~g--~~~~ad~  205 (300)
                      .......+.+....    .....+.+++..+.+.|.+.+  .|++++++++|+++..+++.++.|.+. +|  .++.||+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~Adl  179 (591)
T 3i3l_A          100 QDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDF  179 (591)
T ss_dssp             SSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESE
T ss_pred             CCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCE
Confidence            22111122222111    223456789999999888776  589999999999999875555778887 66  4799999


Q ss_pred             EEEcCCCChHhhhhcCCCCCcc-ccceEEEEEeeCC--CCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEcC
Q 022277          206 VIGCDGIRSPIAKWIGFSEPKY-VGHCAYRGLGYYP--NGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN  277 (300)
Q Consensus       206 vV~A~G~~s~~r~~~g~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  277 (300)
                      ||+|+|.+|.+++.+|...+.. ....++.......  ...+..........+++++|++|++++.+.+.+....
T Consensus       180 VV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~~~G~~w~iPl~~~~~sv~~~~~~  254 (591)
T 3i3l_A          180 VIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVVDR  254 (591)
T ss_dssp             EEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEEEETTEEEEEEECSSSEEEEEEEEEG
T ss_pred             EEECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEEEcCCcEEEEEECCCCeEEEEEEcCH
Confidence            9999999999999998653321 1112222222211  1223333444556688899999999987776655544

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.90  E-value=1.7e-22  Score=188.55  Aligned_cols=219  Identities=18%  Similarity=0.218  Sum_probs=155.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+|||||++||++|+.|++ .|++|+||||.+.+...+++..+.++++++++.+|+.+.+.........+.++...
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD  110 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence            46899999999999999999999 99999999999988888899999999999999999999888766666666666532


Q ss_pred             ----CceEE--EecCCC-CCCCcceeeecHHHHHHHHHhcC--CCC--eEEeCCeEEEEEEcCC---ceEEEEEc-----
Q 022277          136 ----GRELR--SFGFKD-EDASQEVRAVERRILLETLANQL--PPE--SVQFSSELAKIETSGN---GVTILELV-----  196 (300)
Q Consensus       136 ----~~~~~--~~~~~~-~~~~~~~~~i~~~~l~~~l~~~~--~g~--~i~~~~~v~~i~~~~~---~~~~v~~~-----  196 (300)
                          +....  .++... .........+.+..+.+.|.+.+  .|+  +|+++++|++++.+++   ..+.|++.     
T Consensus       111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~  190 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA  190 (639)
T ss_dssp             TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred             CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence                33221  122111 11233456788999998888777  354  9999999999998763   13446654     


Q ss_pred             -CC--cEEEcCEEEEcCCCChHhhhhcCCCCCccccceEEEEEeeC--CCCCCCCCceEEEEeCCeEEEEEEcCCC-eEE
Q 022277          197 -NG--TRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAYRGLGYY--PNGQPFEPKLNYIYGRGVRAGYVPVSPT-KVY  270 (300)
Q Consensus       197 -~g--~~~~ad~vV~A~G~~s~~r~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~  270 (300)
                       +|  ++++||+||+|||.+|.+|+.+|+..+.......| ++++.  ....+.......+..++++++++|++++ .++
T Consensus       191 ~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~P~~~~~~~r  269 (639)
T 2dkh_A          191 HAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAW-GVMDVLAVTDFPDVRYKVAIQSEQGNVLIIPREGGHLVR  269 (639)
T ss_dssp             GTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCE-EEEEEEEEECCTTTTSEEEEEETTEEEEEEECTTSSCEE
T ss_pred             CCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceE-EEEEEEEccCCCccceeEEEEcCCceEEEEEcCCCcEEE
Confidence             45  47999999999999999999998875544333222 22221  1111111122222237788899999988 555


Q ss_pred             EEEEEc
Q 022277          271 WFICHN  276 (300)
Q Consensus       271 ~~~~~~  276 (300)
                      +++.+.
T Consensus       270 ~~~~~~  275 (639)
T 2dkh_A          270 FYVEMD  275 (639)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            555443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.90  E-value=3e-22  Score=177.52  Aligned_cols=180  Identities=21%  Similarity=0.222  Sum_probs=132.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--CCceeeEchhHHHHHHHcCCcHHHHhcc---c-cccceEEE
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--GGTSLTLFKNGWSVLDALGVGSDLRSQF---L-EIKGMAVK  132 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--~g~~~~~~~~~~~~l~~~g~~~~~~~~~---~-~~~~~~~~  132 (300)
                      .+|+||||||+||++|+.|+++|++|+||||.+.+..  .|.++.+.+++.+.|+++|+.+.+....   . ......+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            4799999999999999999999999999999987754  4778889999999999999887654321   1 11122333


Q ss_pred             cCCCceEEEec----CCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEE
Q 022277          133 SEDGRELRSFG----FKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIG  208 (300)
Q Consensus       133 ~~~~~~~~~~~----~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~  208 (300)
                      ...+.......    ............+.|..|.+.|.+.+ +..|+++++|++++..+++.+.|.+.||++++||+||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~-~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVg  160 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL-ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVG  160 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHHTTC-TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEE
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhc-cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEE
Confidence            33333222111    11112234456789999999999887 45799999999999877765669999999999999999


Q ss_pred             cCCCChHhhhhcCCC-CCccccceEEEEEeeC
Q 022277          209 CDGIRSPIAKWIGFS-EPKYVGHCAYRGLGYY  239 (300)
Q Consensus       209 A~G~~s~~r~~~g~~-~~~~~~~~~~~~~~~~  239 (300)
                      |||.+|.+|+.++.. .+.+.++..+.+....
T Consensus       161 ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~  192 (412)
T 4hb9_A          161 ADGSNSKVRKQYLPFIERFDVGVSMIIGRARL  192 (412)
T ss_dssp             CCCTTCHHHHHHSTTCCCEEEEEEEEEEEEEC
T ss_pred             CCCCCcchHHHhCCCccccccceeEEEEEEec
Confidence            999999999999554 4455567777666554

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.90  E-value=2.8e-22  Score=180.21  Aligned_cols=212  Identities=17%  Similarity=0.140  Sum_probs=144.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--CCceeeEchhHHHHHHHcCCcHHHHh-ccccccceEEEc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--GGTSLTLFKNGWSVLDALGVGSDLRS-QFLEIKGMAVKS  133 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--~g~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~  133 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+.+..  ...+..+   +.+.++.+++...... ......+..++.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            358999999999999999999999999999999886432  1222333   4567788887653321 122233444444


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEE
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIV  206 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~v  206 (300)
                      +.+.....+       ....+.++|..+.+.|.+.+  .|++++++++|+++..+++++.+|.+.   +|+  +++||+|
T Consensus        82 ~~~~~~~~~-------~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~V  154 (453)
T 3atr_A           82 PDMQTVWTV-------NGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVV  154 (453)
T ss_dssp             TTSSCEEEE-------EEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEE
T ss_pred             CCCceEEeE-------CCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEE
Confidence            433221111       12346789999999988776  589999999999999887776556554   665  7999999


Q ss_pred             EEcCCCChHhhhhcCCCCC----cc--ccceEEEEEeeCCCCCCCCCceEEEEe----CCeEEEEEEcCCCeEEEEEEEc
Q 022277          207 IGCDGIRSPIAKWIGFSEP----KY--VGHCAYRGLGYYPNGQPFEPKLNYIYG----RGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      |+|+|.+|.+++.++...|    .+  ....+++..+........+....++++    +++++|++|.+++.+.+.+.+.
T Consensus       155 V~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~  234 (453)
T 3atr_A          155 VEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQ  234 (453)
T ss_dssp             EECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCTTTSTTSCEEEEEEETTEEEEEEEEE
T ss_pred             EECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCCeEEEEECCCCCCCcEEEEEECCCCeEEEEEEec
Confidence            9999999999999986542    11  234566655554332212233334553    5788999999999887766665


Q ss_pred             CC
Q 022277          277 NP  278 (300)
Q Consensus       277 ~~  278 (300)
                      ..
T Consensus       235 ~~  236 (453)
T 3atr_A          235 GG  236 (453)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.84  E-value=8.1e-19  Score=160.47  Aligned_cols=217  Identities=15%  Similarity=0.099  Sum_probs=142.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH------------cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHH--HHhc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR------------LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD--LRSQ  122 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~------------~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~--~~~~  122 (300)
                      ..+||+|||||++|+++|..|++            .|++|+|||+.+.+. .+.+.++.+...++++.+|+.+.  +...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~-~g~g~~~~p~~~~~l~~lGi~e~~~~~~~   84 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVAT-IGVGEGTWPSMRSTLSKIGIDENDFIRQC   84 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCC-CCSCEECCTHHHHHHHHHTCCHHHHHHHT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCC-cceeeechHhHHHHHHHcCCCHHHHHHHc
Confidence            46899999999999999999999            899999999976543 34477888999999999999885  4443


Q ss_pred             c-ccccceEEEcCCC-------ce-EEEec---------CC----------------------------------CC--C
Q 022277          123 F-LEIKGMAVKSEDG-------RE-LRSFG---------FK----------------------------------DE--D  148 (300)
Q Consensus       123 ~-~~~~~~~~~~~~~-------~~-~~~~~---------~~----------------------------------~~--~  148 (300)
                      . ....++.+.+...       .. ...+.         +.                                  ..  .
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~~  164 (526)
T 2pyx_A           85 DASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHF  164 (526)
T ss_dssp             TCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTCC
T ss_pred             CCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccCC
Confidence            2 2223344432211       11 11111         00                                  00  0


Q ss_pred             CCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCc-eEEEEEcCCcEEEcCEEEEcCCCChHh-hhhcCCC
Q 022277          149 ASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDGIRSPI-AKWIGFS  223 (300)
Q Consensus       149 ~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G~~s~~-r~~~g~~  223 (300)
                      .....+.+++..+.+.|.+.+   .|++++++ +|++++.++++ ++.|.+.+|.+++||+||+|+|.+|.+ ++.+|..
T Consensus       165 ~~~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~  243 (526)
T 2pyx_A          165 QNNYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVP  243 (526)
T ss_dssp             SSCCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCC
T ss_pred             CCCeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence            112345789999988887665   48999999 69999887554 456888887789999999999999988 6667765


Q ss_pred             CCccc----cceEEEEEeeCCCC-CCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277          224 EPKYV----GHCAYRGLGYYPNG-QPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       224 ~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      ...+.    ...++...++.... .+..........+.++.|++|++++ ..+.+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~-~~~~~v~~  300 (526)
T 2pyx_A          244 FLSQKSVLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLPTR-KGVGYVYS  300 (526)
T ss_dssp             EEECHHHHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECSSE-EEEEEEEC
T ss_pred             cccccccccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCCCc-eEEEEEec
Confidence            42221    22233333343321 1122222334557788899999885 43344443

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.82  E-value=1.8e-18  Score=157.79  Aligned_cols=216  Identities=15%  Similarity=0.099  Sum_probs=135.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHH--HHhccccc-cceEE
Q 022277           58 KEDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD--LRSQFLEI-KGMAV  131 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~---~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~--~~~~~~~~-~~~~~  131 (300)
                      .+||+|||||++|+++|+.|++   .|++|+|||+.+.+ ..+.+..+.+....+++.+|+.+.  +....... .++.+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~-~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~   80 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVR-RIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRF   80 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCC-ceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEecccee
Confidence            4799999999999999999999   99999999998643 345566778888889999999875  33322111 12222


Q ss_pred             EcCC--Cc-eEEEec---------C-----------------------------------CCCC----C-----------
Q 022277          132 KSED--GR-ELRSFG---------F-----------------------------------KDED----A-----------  149 (300)
Q Consensus       132 ~~~~--~~-~~~~~~---------~-----------------------------------~~~~----~-----------  149 (300)
                      .+..  +. ....+.         +                                   ....    .           
T Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  160 (511)
T 2weu_A           81 ENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQ  160 (511)
T ss_dssp             ESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGC
T ss_pred             cCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccC
Confidence            2111  00 000000         0                                   0000    0           


Q ss_pred             ---CcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCc-eEEEEEcCCcEEEcCEEEEcCCCChHhhh-hcCC
Q 022277          150 ---SQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDGIRSPIAK-WIGF  222 (300)
Q Consensus       150 ---~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G~~s~~r~-~~g~  222 (300)
                         ....+.+++..+.+.|.+.+  .|++++++ +|++++.++++ ++.|.+.+|++++||+||+|+|.+|.+++ .+|.
T Consensus       161 ~~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~  239 (511)
T 2weu_A          161 RAQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGG  239 (511)
T ss_dssp             CSCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCC
T ss_pred             cCCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCC
Confidence               23346789999999988776  58999999 99999886544 46688888888999999999999998854 4576


Q ss_pred             CCCc----cccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277          223 SEPK----YVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       223 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      ....    .....++...++................++++.|++|+++ +..+.+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~-~~~~g~~~~  296 (511)
T 2weu_A          240 RFQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLFK-RDGNGYVYS  296 (511)
T ss_dssp             CEEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECSS-EEEEEEEEC
T ss_pred             CCccccccCcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECCC-ceEEEEEEC
Confidence            4321    1122223222333221112222334456778999999988 455444554

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.81  E-value=4.3e-18  Score=156.11  Aligned_cols=217  Identities=16%  Similarity=0.141  Sum_probs=138.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH---cCCcEEEEecCCCcCCCCceeeEchhHHH-HHHHcCCcHH--HHhccccc-cce
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQADSLRTGGTSLTLFKNGWS-VLDALGVGSD--LRSQFLEI-KGM  129 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~---~G~~V~viE~~~~~~~~g~~~~~~~~~~~-~l~~~g~~~~--~~~~~~~~-~~~  129 (300)
                      ..+||+|||||++|+++|+.|++   .|++|+|||+.... ..+.+.++.+.... +++.+|+.+.  +....... .++
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~-~~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~g~   82 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP-RIGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAAI   82 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC-CCCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEECEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC-CcCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhhCCc
Confidence            46899999999999999999999   99999999996643 34446777888888 9999998764  32221111 122


Q ss_pred             EEEcCC-------Cce-EEEec---------C------------C-C-----------------------CCCCcceeee
Q 022277          130 AVKSED-------GRE-LRSFG---------F------------K-D-----------------------EDASQEVRAV  156 (300)
Q Consensus       130 ~~~~~~-------~~~-~~~~~---------~------------~-~-----------------------~~~~~~~~~i  156 (300)
                      .+....       +.. .....         +            . .                       .......+.+
T Consensus        83 ~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i  162 (538)
T 2aqj_A           83 KFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWHF  162 (538)
T ss_dssp             EEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCEEEE
T ss_pred             cccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCccEEE
Confidence            222111       000 00000         0            0 0                       0001234678


Q ss_pred             cHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCc-eEEEEEcCCcEEEcCEEEEcCCCChHhhh-hcCCCCCccc----
Q 022277          157 ERRILLETLANQL--PPESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDGIRSPIAK-WIGFSEPKYV----  228 (300)
Q Consensus       157 ~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G~~s~~r~-~~g~~~~~~~----  228 (300)
                      ++..+.+.|.+.+  .|++++++ +|+++..++++ ++.|.+.+|++++||+||+|+|.+|.++. .+|.....+.    
T Consensus       163 ~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~~  241 (538)
T 2aqj_A          163 DAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDYLL  241 (538)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTTCC
T ss_pred             eHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCccccccccc
Confidence            8999999988776  58999999 89999886554 45688888888999999999999998854 4465432222    


Q ss_pred             cceEEEEEeeCCCCC-CCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277          229 GHCAYRGLGYYPNGQ-PFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       229 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      ...++...++..... ...........++++.|++|++++ ..+.+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~g~v~~  289 (538)
T 2aqj_A          242 CDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGR-FGSGYVFS  289 (538)
T ss_dssp             CCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETTE-EEEEEEEC
T ss_pred             cceEEEEecccCCcccCCCCceeeeecCCceEEEecCCCc-eEEEEEEc
Confidence            122333223322110 012222334567788999999885 44444443

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.81  E-value=1.1e-17  Score=154.38  Aligned_cols=214  Identities=16%  Similarity=0.126  Sum_probs=133.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCCC-CceeeEchhHHHHHHHcCCcHHHHhccccc---
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL------GIGSLVIEQADSLRTG-GTSLTLFKNGWSVLDALGVGSDLRSQFLEI---  126 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~------G~~V~viE~~~~~~~~-g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---  126 (300)
                      +.+||+|||||++||++|+.|++.      |++|+||||.+.++.. ..+..+.+++++.+  ++-   +.....+.   
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l~~---~~~~g~~~~~~  108 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--FPD---WKEKGAPLNTP  108 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--CTT---HHHHTCCCCEE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--HHH---HHhcCCceeee
Confidence            468999999999999999999999      9999999999876532 33455777766654  221   21111111   


Q ss_pred             ---cceEEEcCCCceEEEecC-CC-CCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC-ceEEEEEc--
Q 022277          127 ---KGMAVKSEDGRELRSFGF-KD-EDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN-GVTILELV--  196 (300)
Q Consensus       127 ---~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~-~~~~v~~~--  196 (300)
                         ..+.+....+.  ..++. .. .......+.+.+..+.+.|.+.+  .|++|+++++|+++..+++ .+++|.+.  
T Consensus       109 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~  186 (584)
T 2gmh_A          109 VTEDRFGILTEKYR--IPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDV  186 (584)
T ss_dssp             CCEEEEEEECSSCE--EECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCE
T ss_pred             echhheeeeccCCC--ccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCc
Confidence               12333332221  11221 11 11123356788999999988776  4899999999999998765 45567765  


Q ss_pred             ----CC---------cEEEcCEEEEcCCCChHhhhhc----CCCCC---ccccceEEEEEeeCCCCCCCCCceEEEEe--
Q 022277          197 ----NG---------TRIYANIVIGCDGIRSPIAKWI----GFSEP---KYVGHCAYRGLGYYPNGQPFEPKLNYIYG--  254 (300)
Q Consensus       197 ----~g---------~~~~ad~vV~A~G~~s~~r~~~----g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  254 (300)
                          +|         .++.||+||+|+|.+|.+|+.+    |+...   ...+. .+......+...........+++  
T Consensus       187 g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~-g~~~~~~v~~~~~~~~~~~~~~g~~  265 (584)
T 2gmh_A          187 GIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGI-GLKELWVIDEKKWKPGRVDHTVGWP  265 (584)
T ss_dssp             EECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEE-EEEEEEECCGGGCCTTEEEEEEETT
T ss_pred             cccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHh-hhhhheecCcccccCCeEEEEEecc
Confidence                33         5799999999999999998876    55432   22222 22222333322222333333332  


Q ss_pred             ----CCeEEEEEEcC--CCeEEEEEEEcCC
Q 022277          255 ----RGVRAGYVPVS--PTKVYWFICHNNP  278 (300)
Q Consensus       255 ----~~~~~~~~p~~--~~~~~~~~~~~~~  278 (300)
                          ..+..+++|.+  ++.+.+.+....+
T Consensus       266 ~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~  295 (584)
T 2gmh_A          266 LDRHTYGGSFLYHLNEGEPLLALGFVVGLD  295 (584)
T ss_dssp             SCTTSCEEEEEEECCSSSCEEEEEEEEETT
T ss_pred             ccCCcCCceEEEEecCCCCeEEEEEEEecC
Confidence                12345678888  7877777666544

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.80  E-value=7.5e-18  Score=154.81  Aligned_cols=217  Identities=16%  Similarity=0.158  Sum_probs=139.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH---cCCcEEEEecCCCcCCCCceeeEchhHHH-HHHHcCCcHH--HHhccccc-cce
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQADSLRTGGTSLTLFKNGWS-VLDALGVGSD--LRSQFLEI-KGM  129 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~---~G~~V~viE~~~~~~~~g~~~~~~~~~~~-~l~~~g~~~~--~~~~~~~~-~~~  129 (300)
                      ..+||+|||||++|+++|+.|++   .|++|+|||+.+.+. .+.+..+.+.... +++.+|+.+.  +....... .++
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~~g~  102 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPT-LGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAI  102 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCC-CCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEECEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCc-cceeeeechhHHHHHHHHhCCChHHHHHhcCCeEEEee
Confidence            46899999999999999999999   999999999976543 3446778888888 9999999865  44322211 223


Q ss_pred             EEEcCCCc---------------e-EEEecC----------------------C-C---C-----------------C--
Q 022277          130 AVKSEDGR---------------E-LRSFGF----------------------K-D---E-----------------D--  148 (300)
Q Consensus       130 ~~~~~~~~---------------~-~~~~~~----------------------~-~---~-----------------~--  148 (300)
                      .+......               . ...+..                      . .   .                 .  
T Consensus       103 ~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (550)
T 2e4g_A          103 KFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGS  182 (550)
T ss_dssp             EEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTTSC
T ss_pred             eEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhcCC
Confidence            22221111               0 011100                      0 0   0                 0  


Q ss_pred             -CCcceeeecHHHHHHHHHhcC--C-CCeEEeCCeEEEEEEcCCc-eEEEEEcCCcEEEcCEEEEcCCCChHh-hhhcCC
Q 022277          149 -ASQEVRAVERRILLETLANQL--P-PESVQFSSELAKIETSGNG-VTILELVNGTRIYANIVIGCDGIRSPI-AKWIGF  222 (300)
Q Consensus       149 -~~~~~~~i~~~~l~~~l~~~~--~-g~~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~ad~vV~A~G~~s~~-r~~~g~  222 (300)
                       .....+.+++..+.+.|.+.+  . |++++++ +|++++.++++ ++.|.+.+|+++.||+||+|+|.+|.+ ++.+|.
T Consensus       183 ~~~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~  261 (550)
T 2e4g_A          183 KVTNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEE  261 (550)
T ss_dssp             BCSCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCC
T ss_pred             CCCCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCC
Confidence             122345689999999998877  3 8999999 99999886543 466888888889999999999999988 555676


Q ss_pred             CCCccc----cceEEEEEeeCCCCC-CCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277          223 SEPKYV----GHCAYRGLGYYPNGQ-PFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       223 ~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      ....+.    ...++...++..... ...........++++.|++|+++ ...+.+++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl~~-~~~~g~v~~  319 (550)
T 2e4g_A          262 PFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLG-RFGTGYVYS  319 (550)
T ss_dssp             CEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEECSS-EEEEEEEEC
T ss_pred             CcccccccccccceEEEeecccCCcccCCCceeeeecCCceEEEccCCC-ccceEEEEe
Confidence            432221    112222222322110 01222233445778889999987 444444443

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.77  E-value=1.2e-18  Score=153.20  Aligned_cols=193  Identities=15%  Similarity=0.058  Sum_probs=126.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCc-HH-HHhccccccceEEEcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVG-SD-LRSQFLEIKGMAVKSE  134 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~-~~-~~~~~~~~~~~~~~~~  134 (300)
                      .||+|||||++|+++|+.|+++  |++|+|+||.+.+...|.+..+.+++.+.+...++. +. +.........+.+.. 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH-   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-
Confidence            3899999999999999999999  999999999988777788888888776522222232 22 333333334445544 


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      .+..+.      ...+..+..+.+..+.+.|.+.+  .|++++++++|++++..            .+++||+||+|||.
T Consensus        80 ~g~~~~------~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~------------~~~~ad~vV~AdG~  141 (381)
T 3c4a_A           80 HNEPSL------MSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL------------PLADYDLVVLANGV  141 (381)
T ss_dssp             SSSEEE------CCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC------------CGGGCSEEEECCGG
T ss_pred             CCeeEE------ecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc------------ccccCCEEEECCCC
Confidence            343321      11123456789999999998877  48999999999887532            12579999999999


Q ss_pred             ChHhhhhc----CCCCCccccceEEEEEeeCCCCCCCCCceEEEEeCCeEE--EEEEcCCCeEEEEEEE
Q 022277          213 RSPIAKWI----GFSEPKYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRA--GYVPVSPTKVYWFICH  275 (300)
Q Consensus       213 ~s~~r~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~  275 (300)
                      +|. |+.+    |...+.+.++..|.+.....  ...  ...+.....++.  .++|++++...+++..
T Consensus       142 ~S~-R~~l~~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~  205 (381)
T 3c4a_A          142 NHK-TAHFTEALVPQVDYGRNKYIWYGTSQLF--DQM--NLVFRTHGKDIFIAHAYKYSDTMSTFIVEC  205 (381)
T ss_dssp             GGG-TCCSSGGGCCCCEEEEEEEEEEEESSCC--SSE--EEEEEEETTEEEEEEEEECSSSCEEEEEEE
T ss_pred             Cch-HHhhhhhcCCCcccCCccEEEEecCCCC--Ccc--eeeEeeCCCcEEEEEEEEecCCeEEEEEEC
Confidence            999 9887    44433334556666543221  111  111112244443  3699998876544443

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.69  E-value=1.2e-16  Score=144.90  Aligned_cols=141  Identities=18%  Similarity=0.184  Sum_probs=105.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ...+||+|||||++|+++|+.|++.|++|+|||+.+.++ ......+.+.+.+.++.+|+++....              
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g-~~~~~~~~~~~~~~l~~~g~~~~~~~--------------  154 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS-RHNVLHLWPFTIHDLRALGAKKFYGR--------------  154 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC-CCCEEECCHHHHHHHHTTTHHHHCTT--------------
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccC-CCCcccCChhHHHHHHHcCCcccccc--------------
Confidence            356899999999999999999999999999999998764 23556677888888888876532110              


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC--CceEEEEE--c-CC--cEEEcCEE
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILEL--V-NG--TRIYANIV  206 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~--~~~~~v~~--~-~g--~~~~ad~v  206 (300)
                              +    .......+.+..+.+.|.+.+  .|++|+++++|++++.++  +..+.|.+  . +|  .++.||+|
T Consensus       155 --------~----~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~V  222 (497)
T 2bry_A          155 --------F----CTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVL  222 (497)
T ss_dssp             --------T----TCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEE
T ss_pred             --------c----cccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEE
Confidence                    0    011123466777777776655  589999999999998752  23355766  3 55  46999999


Q ss_pred             EEcCCCChHhhhhcCCC
Q 022277          207 IGCDGIRSPIAKWIGFS  223 (300)
Q Consensus       207 V~A~G~~s~~r~~~g~~  223 (300)
                      |+|+|.+|.+|+..+..
T Consensus       223 V~A~G~~S~~r~~~~~~  239 (497)
T 2bry_A          223 ISAAGGKFVPEGFTIRE  239 (497)
T ss_dssp             EECCCTTCCCTTCEEEE
T ss_pred             EECCCCCcccccccchh
Confidence            99999999998766543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.68  E-value=1.2e-15  Score=134.77  Aligned_cols=116  Identities=12%  Similarity=0.026  Sum_probs=78.0

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCCCCccccce
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFSEPKYVGHC  231 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~~~~~~~~~  231 (300)
                      .++...+.+.|.+.+  .|++++++++|+++..++++++.|.+.+| ++.||.||+|+|.++ .+++.+|+..|......
T Consensus       170 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~~~~~~~~  248 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFELPIQSHPL  248 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCCCEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCCCccccce
Confidence            345667777776655  48999999999999988777777888888 699999999999998 67777887665543222


Q ss_pred             EEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEEEEc
Q 022277          232 AYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHN  276 (300)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  276 (300)
                      .+...-+...  ...   .+++......++.|..++++.+.....
T Consensus       249 ~~~~~~~~~~--~~~---~~~~~~~~~~y~~p~~~g~~~ig~~~~  288 (405)
T 2gag_B          249 QALVSELFEP--VHP---TVVMSNHIHVYVSQAHKGELVMGAGID  288 (405)
T ss_dssp             EEEEEEEBCS--CCC---SEEEETTTTEEEEECTTSEEEEEEEEC
T ss_pred             eEEEecCCcc--ccC---ceEEeCCCcEEEEEcCCCcEEEEeccC
Confidence            2221111111  111   123334445667898888887665554

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.65  E-value=1e-14  Score=127.08  Aligned_cols=69  Identities=16%  Similarity=0.273  Sum_probs=57.2

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCCh-Hhhhhc-CCC
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRS-PIAKWI-GFS  223 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s-~~r~~~-g~~  223 (300)
                      .++...+.+.|.+.+  .|++|+++++|++++.++++.+.|.+.+|  .++.||.||+|+|.+| .+.+.+ |++
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          146 IVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred             EECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence            467778888887766  58999999999999988776566888888  3799999999999998 577777 765

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.65  E-value=1.4e-15  Score=134.67  Aligned_cols=151  Identities=21%  Similarity=0.320  Sum_probs=94.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEch--------------hHHHHHHHcCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLFK--------------NGWSVLDALGVG  116 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~~--------------~~~~~l~~~g~~  116 (300)
                      +..+||+|||||++|+++|+.|+++|++|+|+|+.+.++.     ++..+.+..              .....+..+...
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ  104 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence            3568999999999999999999999999999999987642     111111110              011222222211


Q ss_pred             HHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEE
Q 022277          117 SDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILE  194 (300)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~  194 (300)
                      +.+ . .....++.+....             .+..+.......+.+.|.+.+  .|++|+++++|+++..++++ +.|.
T Consensus       105 ~~~-~-~~~~~Gi~~~~~~-------------~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~-~~V~  168 (417)
T 3v76_A          105 DFV-A-LVERHGIGWHEKT-------------LGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG-FRVT  168 (417)
T ss_dssp             HHH-H-HHHHTTCCEEECS-------------TTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE-EEEE
T ss_pred             HHH-H-HHHHcCCCcEEee-------------CCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE-EEEE
Confidence            111 0 0001111111111             111122244556777776655  38999999999999988776 6688


Q ss_pred             EcCCcEEEcCEEEEcCCCCh-----------HhhhhcCCC
Q 022277          195 LVNGTRIYANIVIGCDGIRS-----------PIAKWIGFS  223 (300)
Q Consensus       195 ~~~g~~~~ad~vV~A~G~~s-----------~~r~~~g~~  223 (300)
                      +.+| ++.||.||+|+|.+|           .+.+.+|..
T Consensus       169 ~~~g-~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~  207 (417)
T 3v76_A          169 TSAG-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLP  207 (417)
T ss_dssp             ETTE-EEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCC
T ss_pred             ECCc-EEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCC
Confidence            8888 899999999999998           356666655

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.63  E-value=4.8e-15  Score=124.82  Aligned_cols=135  Identities=24%  Similarity=0.302  Sum_probs=90.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCCCCc-------eeeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGT-------SLTLFKNGWSVLDALGVGSDLRSQFLEIK  127 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~~~g~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  127 (300)
                      ...+||+|||||++|+++|+.|++. |++|+|+|+.+.++....       ...+.....++++.+|+....        
T Consensus        37 ~~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~--------  108 (284)
T 1rp0_A           37 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDE--------  108 (284)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEE--------
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCccc--------
Confidence            3568999999999999999999997 999999999987642110       112223334555554432100        


Q ss_pred             ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEc--------
Q 022277          128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELV--------  196 (300)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~--------  196 (300)
                             .+              ......+...+...|.+.+   .|++++++++|+++..+++.+..|.+.        
T Consensus       109 -------~~--------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~  167 (284)
T 1rp0_A          109 -------QD--------------TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNH  167 (284)
T ss_dssp             -------CS--------------SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCT
T ss_pred             -------CC--------------CEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEecccccccc
Confidence                   00              0011124455555555443   489999999999999887765556553        


Q ss_pred             -CC-----cEEEcCEEEEcCCCChHhhhh
Q 022277          197 -NG-----TRIYANIVIGCDGIRSPIAKW  219 (300)
Q Consensus       197 -~g-----~~~~ad~vV~A~G~~s~~r~~  219 (300)
                       +|     ..+.||.||+|+|..|.++..
T Consensus       168 ~~g~~g~~~~i~ad~VV~AtG~~s~~~~~  196 (284)
T 1rp0_A          168 HTQSCMDPNVMEAKIVVSSCGHDGPFGAT  196 (284)
T ss_dssp             TTSSCCCCEEEEEEEEEECCCSSSTTTTH
T ss_pred             CccccCceEEEECCEEEECCCCchHHHHH
Confidence             22     479999999999988876543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.63  E-value=6.4e-15  Score=129.01  Aligned_cols=68  Identities=15%  Similarity=0.172  Sum_probs=56.7

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFS  223 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~  223 (300)
                      ..++...+.+.|.+.+  .|++|+++++|++++.++++ +.|.+.+| ++.||.||+|+|.+| .+.+.+|..
T Consensus       149 ~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          149 ADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTE-EEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC
T ss_pred             ceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC
Confidence            3467788888887766  48999999999999988776 66888887 799999999999998 567777765

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.63  E-value=4.4e-15  Score=133.04  Aligned_cols=162  Identities=17%  Similarity=0.219  Sum_probs=96.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEchh-HHHHHHHcCCcHHHHh----cccc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFKN-GWSVLDALGVGSDLRS----QFLE  125 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~~~-~~~~l~~~g~~~~~~~----~~~~  125 (300)
                      +.+||+|||||++|+++|+.|+++|.+|+|+|+.+.++.      ++........ ...+++.++....+..    ....
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN  104 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence            568999999999999999999999999999999886531      1111101000 1122222221111000    0000


Q ss_pred             ccceEEEcCCCceEEEecCCCCCCCccee-eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEE
Q 022277          126 IKGMAVKSEDGRELRSFGFKDEDASQEVR-AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIY  202 (300)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~  202 (300)
                      ...+.+....|......     ..+..+. ......+.+.|.+.+  .|++|+++++|+++..++++++.|.+.+|+++.
T Consensus       105 ~~~~~~~~~~G~~~~~~-----~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~  179 (447)
T 2i0z_A          105 EDIITFFENLGVKLKEE-----DHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLE  179 (447)
T ss_dssp             HHHHHHHHHTTCCEEEC-----GGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEE
T ss_pred             HHHHHHHHhcCCceEEe-----eCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEE
Confidence            00000000001000000     0000000 012356666666555  489999999999999877776789999887799


Q ss_pred             cCEEEEcCCCCh-----------HhhhhcCCC
Q 022277          203 ANIVIGCDGIRS-----------PIAKWIGFS  223 (300)
Q Consensus       203 ad~vV~A~G~~s-----------~~r~~~g~~  223 (300)
                      ||.||+|+|.+|           .+++.+|..
T Consensus       180 Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~  211 (447)
T 2i0z_A          180 TNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT  211 (447)
T ss_dssp             CSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             CCEEEECCCCCcCCCCCCCcHHHHHHHHCCCC
Confidence            999999999999           778888765

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.63  E-value=3.9e-15  Score=130.62  Aligned_cols=72  Identities=14%  Similarity=0.077  Sum_probs=57.5

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCC--CCcc
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFS--EPKY  227 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~--~~~~  227 (300)
                      .++...+.+.|.+.+  .|++++++++|++++.+++++.+|.+.+| ++.||.||+|+|.+| .+.+.+|..  .|..
T Consensus       145 ~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~~  221 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKTKIPIE  221 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCSCCCCE
T ss_pred             eECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCcCcCCC
Confidence            466778877777666  48999999999999988777555888877 799999999999998 567777765  4543

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.62  E-value=7.6e-15  Score=134.87  Aligned_cols=69  Identities=10%  Similarity=0.005  Sum_probs=56.2

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCCCCh-HhhhhcCCC
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDGIRS-PIAKWIGFS  223 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G~~s-~~r~~~g~~  223 (300)
                      .++...+...|.+.+  .|++|+++++|+++..+++++++|.+.+   |  ..+.||.||+|+|.++ .+++.+|..
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCC
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCC
Confidence            566778888777666  5999999999999999888877787764   3  3799999999999998 567777764

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.62  E-value=8.3e-15  Score=133.33  Aligned_cols=141  Identities=16%  Similarity=0.298  Sum_probs=92.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------------------------CCcee----------e--
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------------------------GGTSL----------T--  101 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------------------------~g~~~----------~--  101 (300)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.+.+..                        +|.+.          .  
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            47999999999999999999999999999999875410                        00000          0  


Q ss_pred             --EchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeC
Q 022277          102 --LFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFS  177 (300)
Q Consensus       102 --~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~  177 (300)
                        ......+.+...|....+...                         . ...........+.+.|.+.+  .|++|+++
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~-------------------------~-~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~  240 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYV-------------------------S-KPHIGTFKLVTMIEKMRATIIELGGEIRFS  240 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTB-------------------------S-SCCCCHHHHHHHHHHHHHHHHHTTCEEESS
T ss_pred             cccHHHHHHHHHHcCCCceEeec-------------------------c-ccccccchHHHHHHHHHHHHHhcCCEEEeC
Confidence              001111222222222111000                         0 01111123445666665544  48999999


Q ss_pred             CeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH----hhhhcCCCC
Q 022277          178 SELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP----IAKWIGFSE  224 (300)
Q Consensus       178 ~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~----~r~~~g~~~  224 (300)
                      ++|+++..++++++.|.+.+|+++.||.||+|+|+++.    ..+..|+..
T Consensus       241 t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~~  291 (549)
T 3nlc_A          241 TRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVYM  291 (549)
T ss_dssp             CCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCCC
T ss_pred             CEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCCc
Confidence            99999998888777899999989999999999999984    444556653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.62  E-value=1.4e-14  Score=136.23  Aligned_cols=210  Identities=12%  Similarity=0.068  Sum_probs=115.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCC--c-eeeEch------------------hHHHHHHHcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGG--T-SLTLFK------------------NGWSVLDALGV  115 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g--~-~~~~~~------------------~~~~~l~~~g~  115 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|++..++.+.  . +-.+.+                  .+.++++.++.
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPV  350 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCC
Confidence            34899999999999999999999999999999986654211  1 111111                  12233333332


Q ss_pred             cHHHHh---------------------ccccccceEEEcCCCceEEEecCCCC---CCCcceeeecHHHHHHHHHhcC--
Q 022277          116 GSDLRS---------------------QFLEIKGMAVKSEDGRELRSFGFKDE---DASQEVRAVERRILLETLANQL--  169 (300)
Q Consensus       116 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~l~~~~--  169 (300)
                      ......                     ...+...+.+.+.... ....+....   ........++...+.+.|.+.+  
T Consensus       351 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~-~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~  429 (676)
T 3ps9_A          351 KFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAV-EQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQ  429 (676)
T ss_dssp             CCCEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHHH-HHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHHH
T ss_pred             CcCcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHHH-HHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHHh
Confidence            100000                     0000000001100000 000000000   0011233467778888887766  


Q ss_pred             CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-hhhhcCCCCCccccceEEEEEeeCCCCCCCCCc
Q 022277          170 PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPKYVGHCAYRGLGYYPNGQPFEPK  248 (300)
Q Consensus       170 ~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (300)
                      .|++|+++++|+++..++++ +.|.+.+|.++.||.||+|+|.+|. +.+..+++.....|+...   ++...... ...
T Consensus       430 ~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~lpl~p~rGq~~~---~~~~~~~~-~l~  504 (676)
T 3ps9_A          430 QGLQIYYQYQLQNFSRKDDC-WLLNFAGDQQATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSH---IPTTPELA-ELK  504 (676)
T ss_dssp             TTCEEEESCCEEEEEEETTE-EEEEETTSCEEEESEEEECCGGGGGCSTTTTTCSCEEEEEEEEE---EECCTTGG-GCC
T ss_pred             CCCEEEeCCeeeEEEEeCCe-EEEEECCCCEEECCEEEECCCcchhccccccCCcceeecCEEEE---ECCCcccc-cCC
Confidence            48999999999999998877 5688888888999999999999985 444444433333344322   23221111 111


Q ss_pred             eEEEEeCCeEEEEEEcC--CCeEEEEEEEc
Q 022277          249 LNYIYGRGVRAGYVPVS--PTKVYWFICHN  276 (300)
Q Consensus       249 ~~~~~~~~~~~~~~p~~--~~~~~~~~~~~  276 (300)
                       ..+. .+  .++.|..  ++.+.+...+.
T Consensus       505 -~~l~-~~--~Yl~P~~~~~g~~~iG~t~~  530 (676)
T 3ps9_A          505 -QVLC-YD--GYLTPQNPANQHHCIGASYH  530 (676)
T ss_dssp             -SEEE-SS--SEECCCBTTTTEEEEECCCE
T ss_pred             -ceeE-CC--eeeccccCCCCeEEEeeccC
Confidence             1222 23  3467877  67666554443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.62  E-value=2.4e-14  Score=126.32  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=55.4

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCCCCcc
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFSEPKY  227 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~~~~~  227 (300)
                      .++...+.+.|.+.+  .|++|+++++|++++.++++ +.|.+.+| ++.||.||+|+|.++ .+.+.+|...|..
T Consensus       149 ~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~p~~  222 (397)
T 2oln_A          149 TIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADG-VSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGARLAYS  222 (397)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTE-EEEEESSC-EEEEEEEEECCGGGHHHHHGGGTCCCCEE
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCe-EEEEECCC-EEEcCEEEEcCCcChHHHhhhcCCCCCee
Confidence            456677777777655  48999999999999988776 44777666 799999999999995 5777777655533

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.61  E-value=1e-14  Score=124.44  Aligned_cols=132  Identities=23%  Similarity=0.330  Sum_probs=88.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCC-------ceeeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGG-------TSLTLFKNGWSVLDALGVGSDLRSQFLEIK  127 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g-------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  127 (300)
                      ..+||+|||||++|+++|+.|+++  |++|+|+|+...++.+.       ....+.+...++++.+|+....        
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~--------  149 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYED--------  149 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEE--------
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccc--------
Confidence            468999999999999999999997  99999999998764211       1122334556666666653110        


Q ss_pred             ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCC----------------
Q 022277          128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGN----------------  188 (300)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~----------------  188 (300)
                             .+.              .....+..++.+.|.+.+   ++++++++++|+++..+++                
T Consensus       150 -------~G~--------------~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~  208 (344)
T 3jsk_A          150 -------EGD--------------YVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDE  208 (344)
T ss_dssp             -------CSS--------------EEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------
T ss_pred             -------cCC--------------eEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccC
Confidence                   000              011112345555555544   4899999999999987652                


Q ss_pred             ---ceEEEEEc--------------CCcEEEcCEEEEcCCCChHhh
Q 022277          189 ---GVTILELV--------------NGTRIYANIVIGCDGIRSPIA  217 (300)
Q Consensus       189 ---~~~~v~~~--------------~g~~~~ad~vV~A~G~~s~~r  217 (300)
                         .+.+|.+.              +..+++|++||+|||..+.++
T Consensus       209 g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~  254 (344)
T 3jsk_A          209 AKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFG  254 (344)
T ss_dssp             CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSS
T ss_pred             CCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhh
Confidence               44455542              224799999999999998843

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.61  E-value=1.7e-14  Score=126.73  Aligned_cols=211  Identities=13%  Similarity=0.091  Sum_probs=113.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce---eeE-c----h--hHHHH-HHHcCCcHHHHhcc--
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS---LTL-F----K--NGWSV-LDALGVGSDLRSQF--  123 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~---~~~-~----~--~~~~~-l~~~g~~~~~~~~~--  123 (300)
                      +.+||+|||||++|+++|+.|+++|++|+|+|+.......+.+   ..+ .    .  ...+. .+.+.++..+....  
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~   81 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            3589999999999999999999999999999998754311111   111 0    0  11111 11112222222110  


Q ss_pred             --ccccceEEEcCC----------------CceEEEecC-------CCCC-C-------CcceeeecHHHHHHHHHhcC-
Q 022277          124 --LEIKGMAVKSED----------------GRELRSFGF-------KDED-A-------SQEVRAVERRILLETLANQL-  169 (300)
Q Consensus       124 --~~~~~~~~~~~~----------------~~~~~~~~~-------~~~~-~-------~~~~~~i~~~~l~~~l~~~~-  169 (300)
                        ....+.......                +.....+..       +... .       ......+++..+.+.|.+.+ 
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (389)
T 2gf3_A           82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (389)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             cceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHH
Confidence              011111111100                000000000       0000 0       01123456678888887766 


Q ss_pred             -CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-hhhhcCCCCCcc--ccceEEEEEeeCCCC-C-
Q 022277          170 -PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPKY--VGHCAYRGLGYYPNG-Q-  243 (300)
Q Consensus       170 -~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-~r~~~g~~~~~~--~~~~~~~~~~~~~~~-~-  243 (300)
                       .|++++++++|++++.++++ +.|.+.+| ++.||.||+|+|.++. +.+.++...|..  .++..+   .+.... . 
T Consensus       162 ~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g~~~pl~~~rg~~~~---~~~~~~~~~  236 (389)
T 2gf3_A          162 ARGAKVLTHTRVEDFDISPDS-VKIETANG-SYTADKLIVSMGAWNSKLLSKLNLDIPLQPYRQVVGF---FESDESKYS  236 (389)
T ss_dssp             HTTCEEECSCCEEEEEECSSC-EEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEECCCEEEEEEEEE---ECCCHHHHB
T ss_pred             HCCCEEEcCcEEEEEEecCCe-EEEEeCCC-EEEeCEEEEecCccHHHHhhhhccCCceEEEEEEEEE---EecCccccc
Confidence             48999999999999987776 55777766 7999999999999974 555666333322  233221   222210 0 


Q ss_pred             C-CCCceEEEEeCCeEEEEEEcCCC-eEEEE
Q 022277          244 P-FEPKLNYIYGRGVRAGYVPVSPT-KVYWF  272 (300)
Q Consensus       244 ~-~~~~~~~~~~~~~~~~~~p~~~~-~~~~~  272 (300)
                      . ......+........+++|..++ .+.+.
T Consensus       237 ~~~~~p~~~~~~~~~~~y~~p~~~g~~~~iG  267 (389)
T 2gf3_A          237 NDIDFPGFMVEVPNGIYYGFPSFGGCGLKLG  267 (389)
T ss_dssp             GGGTCCEEEEEETTEEEEEECBSTTCCEEEE
T ss_pred             ccccCCEEEEeCCCCcEEEcCCCCCCcEEEE
Confidence            0 01112222334446778898887 66543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.60  E-value=1.4e-14  Score=129.55  Aligned_cols=62  Identities=15%  Similarity=0.053  Sum_probs=52.9

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCC---eEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          154 RAVERRILLETLANQL--PPESVQFSS---ELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~---~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      ..++...+.+.|.+.+  .|++|++++   +|+++..+++++.+|.+.+|+++.||.||+|+|.+|.
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            4456677888887766  589999999   9999998887766799999988999999999999985

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.60  E-value=1.1e-14  Score=127.73  Aligned_cols=110  Identities=15%  Similarity=0.180  Sum_probs=72.1

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-hhhhcCCCCCccccce
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPKYVGHC  231 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-~r~~~g~~~~~~~~~~  231 (300)
                      .+++..+.+.|.+.+  .|++++++++|++++.+++++ .|.+.+| ++.||.||+|+|.++. +.+.++...+......
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~~~~~~~~g  237 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEAL-FIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAFLPVKG  237 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSE-EEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCCEEEEE
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEE-EEEcCCc-eEEcCEEEECCChhHHHHHHhcCCCCceeccce
Confidence            456677888777766  489999999999999877764 6888777 7999999999999986 7777776544332221


Q ss_pred             EEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCCeEEEEE
Q 022277          232 AYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFI  273 (300)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  273 (300)
                      .. ...+.... ....   .++.+  ..+++|..++.+.+..
T Consensus       238 ~~-~~~~~~~~-~~~~---~~~~~--~~~~~p~~~g~~~vG~  272 (382)
T 1ryi_A          238 EC-LSVWNDDI-PLTK---TLYHD--HCYIVPRKSGRLVVGA  272 (382)
T ss_dssp             EE-EEEECCSS-CCCS---EEEET--TEEEEECTTSEEEEEC
T ss_pred             EE-EEECCCCC-Cccc---eEEcC--CEEEEEcCCCeEEEee
Confidence            11 12222211 1111   23344  3557898887665443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.60  E-value=2.7e-14  Score=134.52  Aligned_cols=114  Identities=11%  Similarity=-0.033  Sum_probs=72.4

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCc-EEEcCEEEEcCCCChH-hhhhcCCCCCcccc
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGT-RIYANIVIGCDGIRSP-IAKWIGFSEPKYVG  229 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~-~~~ad~vV~A~G~~s~-~r~~~g~~~~~~~~  229 (300)
                      ..++...+.+.|.+.+  .|++|+++++|++++.++++ +.|.+.+|. ++.||.||+|+|.++. +.+.++++.....|
T Consensus       407 g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lpl~p~rG  485 (689)
T 3pvc_A          407 GWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-WQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLPLSAVRG  485 (689)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-EEEEEC-CCCCEEESEEEECCGGGTTCSTTTTTSCCEEEEE
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-EEEEeCCCcEEEECCEEEECCCcchhccccccCCccccccC
Confidence            3467778888887766  58999999999999998877 568888887 7999999999999975 44444443333334


Q ss_pred             ceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcC--CCeEEEEEEEc
Q 022277          230 HCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVS--PTKVYWFICHN  276 (300)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~  276 (300)
                      +...   ++.....  .....++.. +  .++.|..  ++.+.+...+.
T Consensus       486 q~~~---~~~~~~~--~~l~~v~~~-~--~Yl~P~~~~~g~~~iGat~~  526 (689)
T 3pvc_A          486 QVSH---IPTTPVL--SQLQQVLCY-D--GYLTPVNPANQHHCIGASYQ  526 (689)
T ss_dssp             EEEE---EECCTTG--GGCCSEEES-S--SEECCCBTTTTEEEEECCCE
T ss_pred             cEEE---ECCCCcc--ccCCeeEeC-C--ceEccccCCCCeEEEEEecc
Confidence            4322   2322211  111122222 3  3567887  67665554443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.58  E-value=2.5e-14  Score=112.15  Aligned_cols=116  Identities=22%  Similarity=0.295  Sum_probs=84.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      +||+|||||++|+++|..|++.|.+|+|+|+.+.......  .             +                       
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~--~-------------~-----------------------   43 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVS--R-------------V-----------------------   43 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCS--C-------------C-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCch--h-------------h-----------------------
Confidence            6999999999999999999999999999999874321100  0             0                       


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                       ..+  ...  +   ..+...++.+.+.+.+  .|++++++ +|++++.++++ +.|.+++| ++.+|.||+|+|.++.+
T Consensus        44 -~~~--~~~--~---~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~-~~v~~~~g-~i~ad~vI~A~G~~~~~  112 (180)
T 2ywl_A           44 -PNY--PGL--L---DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGV-FEVETEEG-VEKAERLLLCTHKDPTL  112 (180)
T ss_dssp             -CCS--TTC--T---TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSS-EEEECSSC-EEEEEEEEECCTTCCHH
T ss_pred             -hcc--CCC--c---CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCE-EEEEECCC-EEEECEEEECCCCCCCc
Confidence             000  000  0   0123345555555444  38999999 99999987666 55888888 89999999999999988


Q ss_pred             hhhcCCC
Q 022277          217 AKWIGFS  223 (300)
Q Consensus       217 r~~~g~~  223 (300)
                      ++.+|++
T Consensus       113 ~~~~g~~  119 (180)
T 2ywl_A          113 PSLLGLT  119 (180)
T ss_dssp             HHHHTCC
T ss_pred             cccCCCC
Confidence            8888765

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.57  E-value=1.9e-14  Score=117.59  Aligned_cols=128  Identities=17%  Similarity=0.129  Sum_probs=86.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCc-HHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVG-SDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~  135 (300)
                      +.+||+|||||++|+++|+.|++.|.+|+|+|+....  .|  ....+..      .+.. ..+...             
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~--~G--~~~~~~~------~~~~~~~~~~~-------------   58 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDA--VM--MPFLPPK------PPFPPGSLLER-------------   58 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG--TT--CCSSCCC------SCCCTTCHHHH-------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCc--CC--cccCccc------cccchhhHHhh-------------
Confidence            4689999999999999999999999999999998432  11  1111100      0000 000000             


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                            ++  . ..++     ++..+.+.|.+.+   ++++++ +++|+++..++++++.|.+.+|+++.||.||+|+|.
T Consensus        59 ------~~--d-~~g~-----~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~  123 (232)
T 2cul_A           59 ------AY--D-PKDE-----RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGS  123 (232)
T ss_dssp             ------HC--C-TTCC-----CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             ------hc--c-CCCC-----CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCC
Confidence                  00  0 0011     4556666666555   378888 579999998877766788888888999999999999


Q ss_pred             ChHhhhhcCC
Q 022277          213 RSPIAKWIGF  222 (300)
Q Consensus       213 ~s~~r~~~g~  222 (300)
                      ++..+..+|.
T Consensus       124 ~s~~~~~~G~  133 (232)
T 2cul_A          124 FLGARLFLGG  133 (232)
T ss_dssp             CSSCEEEETT
T ss_pred             ChhhceecCC
Confidence            9877765554

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.56  E-value=2e-14  Score=132.46  Aligned_cols=163  Identities=15%  Similarity=0.177  Sum_probs=92.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC----CceeeEchhHHHHHHHcCCcHHHHh----------
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG----GTSLTLFKNGWSVLDALGVGSDLRS----------  121 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~----g~~~~~~~~~~~~l~~~g~~~~~~~----------  121 (300)
                      ...+||+|||||++||++|+.|+++|++|+||||.+.++..    +.++.  .......+.+++.+....          
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~--~~~~~~~~~~g~~ds~~~~~~~~~~~~~  196 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMN--AVGTKQQTAHGVEDKVEWFIEDAMKGGR  196 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEE--CSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeE--ccCCHHHHHhCCCCCHHHHHHHHHHhcC
Confidence            45689999999999999999999999999999999876421    11111  111112222222111000          


Q ss_pred             ---------ccc--cccceEEEcCCCceEEEecC-CCCCCCcce----eeecHHHHHHHHHhcC--CCCeEEeCCeEEEE
Q 022277          122 ---------QFL--EIKGMAVKSEDGRELRSFGF-KDEDASQEV----RAVERRILLETLANQL--PPESVQFSSELAKI  183 (300)
Q Consensus       122 ---------~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i  183 (300)
                               ...  ....+.+....|..+..+.. .....+...    ..+....+.+.|.+.+  .|++|+++++|+++
T Consensus       197 ~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l  276 (566)
T 1qo8_A          197 QQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKL  276 (566)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEE
T ss_pred             CCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEE
Confidence                     000  00000000000100000000 000000000    0133556667776655  48999999999999


Q ss_pred             EEcC-CceEEEEEc--CCc--EEEcCEEEEcCCCChHhhhhc
Q 022277          184 ETSG-NGVTILELV--NGT--RIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       184 ~~~~-~~~~~v~~~--~g~--~~~ad~vV~A~G~~s~~r~~~  220 (300)
                      ..++ +.+++|.+.  +|+  ++.||.||+|+|.++..++.+
T Consensus       277 ~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          277 VVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             EECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             EECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHH
Confidence            9887 666666665  665  689999999999999764443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.56  E-value=4e-14  Score=123.65  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=48.8

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+++..+.+.|.+.+  .|++++++++|++++.++++ +.|.+.+| ++.||.||+|+|.++.
T Consensus       145 ~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          145 FLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG-VTIETADG-EYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESSC-EEEEEEEEECCGGGGG
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE-EEEEECCC-eEEcCEEEEcCCccHH
Confidence            466778888877766  48999999999999987776 55888887 4999999999999874

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.55  E-value=3.6e-14  Score=125.13  Aligned_cols=149  Identities=21%  Similarity=0.262  Sum_probs=89.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCce--ee--Echh---------HHHHHHHcCCcH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTS--LT--LFKN---------GWSVLDALGVGS  117 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~--~~--~~~~---------~~~~l~~~g~~~  117 (300)
                      ..+||+|||||++|+++|+.|+++|.+|+|+|+++.++.      +|..  ..  ..+.         ....+..+...+
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            358999999999999999999999999999999986531      1111  00  0000         001111111000


Q ss_pred             HHHhccccccceEEEc-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc----CCce
Q 022277          118 DLRSQFLEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETS----GNGV  190 (300)
Q Consensus       118 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~----~~~~  190 (300)
                       +.. .....++.+.. ..+..              +.......+.+.|.+.+  .|++++++++|+++..+    +++ 
T Consensus        83 -~~~-~~~~~Gi~~~~~~~g~~--------------~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-  145 (401)
T 2gqf_A           83 -FIS-LVAEQGITYHEKELGQL--------------FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-  145 (401)
T ss_dssp             -HHH-HHHHTTCCEEECSTTEE--------------EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-
T ss_pred             -HHH-HHHhCCCceEECcCCEE--------------ccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-
Confidence             000 00000111111 11110              00003455666665554  38999999999999876    455 


Q ss_pred             EEEEEcCCcEEEcCEEEEcCCCCh-----------HhhhhcCCC
Q 022277          191 TILELVNGTRIYANIVIGCDGIRS-----------PIAKWIGFS  223 (300)
Q Consensus       191 ~~v~~~~g~~~~ad~vV~A~G~~s-----------~~r~~~g~~  223 (300)
                      +.|.+.+| +++||.||+|+|.+|           .+.+.+|..
T Consensus       146 ~~v~~~~g-~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~  188 (401)
T 2gqf_A          146 FVLQVNST-QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (401)
T ss_dssp             EEEEETTE-EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             EEEEECCC-EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCC
Confidence            56878776 799999999999998           455566655

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.54  E-value=6.2e-14  Score=128.75  Aligned_cols=153  Identities=18%  Similarity=0.203  Sum_probs=96.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCCCCceeeEc----hhHHHHHHHcCC-cHHHHhccccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD-SLRTGGTSLTLF----KNGWSVLDALGV-GSDLRSQFLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~-~~~~~g~~~~~~----~~~~~~l~~~g~-~~~~~~~~~~~~~~~  130 (300)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+.. .++..++.....    ....+.++.++- ......    ...+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d----~~gi~  102 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAID----QAGIQ  102 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHH----HHEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhh----hcccc
Confidence            46899999999999999999999999999999985 333222221111    112233344432 111110    11122


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      +...+.       ............+++..+.+.|.+.+   +|+++ ++++|+++..+++.+++|.+.+|..+.||.||
T Consensus       103 f~~l~~-------~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VV  174 (651)
T 3ces_A          103 FRILNA-------SKGPAVRATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVV  174 (651)
T ss_dssp             EEEEST-------TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEE
T ss_pred             hhhhhc-------ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEE
Confidence            211000       00000111223567777777666554   47888 57899999888787778999989889999999


Q ss_pred             EcCCCChHhhhhcC
Q 022277          208 GCDGIRSPIAKWIG  221 (300)
Q Consensus       208 ~A~G~~s~~r~~~g  221 (300)
                      +|+|.++..+...|
T Consensus       175 LATGt~s~~~~i~G  188 (651)
T 3ces_A          175 LTVGTFLDGKIHIG  188 (651)
T ss_dssp             ECCSTTTCCEEECC
T ss_pred             EcCCCCccCccccC
Confidence            99999886655444

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.54  E-value=5.1e-14  Score=126.20  Aligned_cols=72  Identities=10%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEE---------------cCCceEEEEEcCCcEE--EcCEEEEcCCCChH
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIET---------------SGNGVTILELVNGTRI--YANIVIGCDGIRSP  215 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~---------------~~~~~~~v~~~~g~~~--~ad~vV~A~G~~s~  215 (300)
                      .++..++.+.|.+.+  .|++++++++|++++.               ++++++.|.+.+| ++  .||.||+|+|.++.
T Consensus       177 ~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~  255 (448)
T 3axb_A          177 FLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN  255 (448)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH
T ss_pred             EEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH
Confidence            456778888877766  5899999999999987               5556667888888 58  99999999999986


Q ss_pred             -hhhhcCCCCCcc
Q 022277          216 -IAKWIGFSEPKY  227 (300)
Q Consensus       216 -~r~~~g~~~~~~  227 (300)
                       +.+.+|...|..
T Consensus       256 ~l~~~~g~~~~~~  268 (448)
T 3axb_A          256 RLLNPLGIDTFSR  268 (448)
T ss_dssp             HHHGGGTCCCSEE
T ss_pred             HHHHHcCCCCccc
Confidence             777777665544

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.54  E-value=7.1e-13  Score=120.38  Aligned_cols=110  Identities=13%  Similarity=-0.015  Sum_probs=71.5

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCCCChH-hhhh-cCCC--
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDGIRSP-IAKW-IGFS--  223 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~s~-~r~~-~g~~--  223 (300)
                      .++...+...|.+.+  .|++++++++|+++..++ +++.|.+.   +|+  .+.||.||+|+|.++. +.+. ++..  
T Consensus       145 ~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~  223 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRKGGEVLTRTRATSARREN-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSP  223 (501)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCS
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCcc
Confidence            467888888887766  589999999999998876 45667773   565  7999999999999985 4554 5432  


Q ss_pred             CCcc--ccceEEEEEeeCCCCCCCCCceEEEE--eCCeEEEEEEcCCCeEEEE
Q 022277          224 EPKY--VGHCAYRGLGYYPNGQPFEPKLNYIY--GRGVRAGYVPVSPTKVYWF  272 (300)
Q Consensus       224 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~  272 (300)
                      .+..  .|++.   ..+.  ..+..  ..+++  .++..++++|..++.+.+.
T Consensus       224 ~~i~p~rG~~~---~~~~--~~~~~--~~~~~~~~dg~~~~~~P~~~g~~~iG  269 (501)
T 2qcu_A          224 YGIRLIKGSHI---VVPR--VHTQK--QAYILQNEDKRIVFVIPWMDEFSIIG  269 (501)
T ss_dssp             SCBCCEEEEEE---EEEC--SSSCS--CEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred             cccccceeEEE---EECC--CCCCc--eEEEeecCCCCEEEEEEcCCCcEEEc
Confidence            2222  23322   2231  11111  22333  2566778899987765433

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.53  E-value=1.9e-13  Score=115.87  Aligned_cols=136  Identities=18%  Similarity=0.274  Sum_probs=90.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCc-------eeeEchhHHHHHHHcCCcHHHHhccccc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGT-------SLTLFKNGWSVLDALGVGSDLRSQFLEI  126 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~  126 (300)
                      ...+||+|||||++|+++|+.|++.  |++|+|+|+.+.++.+..       ...+.....++++.+++....       
T Consensus        63 ~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~-------  135 (326)
T 2gjc_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYED-------  135 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEE-------
T ss_pred             cCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCccccc-------
Confidence            4568999999999999999999998  999999999887642111       122334445566665543110       


Q ss_pred             cceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcC----C--ceEEEEEc-
Q 022277          127 KGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSG----N--GVTILELV-  196 (300)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~----~--~~~~v~~~-  196 (300)
                             . +              ......+...+...|.+.+   ++++++.+++|+++..++    +  .+.+|.+. 
T Consensus       136 -------~-g--------------~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~  193 (326)
T 2gjc_A          136 -------E-G--------------DYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNW  193 (326)
T ss_dssp             -------C-S--------------SEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEE
T ss_pred             -------C-C--------------CeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecc
Confidence                   0 1              1111113345566665544   489999999999998773    3  55666552 


Q ss_pred             -------------CCcEEEc---------------CEEEEcCCCChHhhhhc
Q 022277          197 -------------NGTRIYA---------------NIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       197 -------------~g~~~~a---------------d~vV~A~G~~s~~r~~~  220 (300)
                                   ++.++.|               ++||+|+|+.+++..++
T Consensus       194 ~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~  245 (326)
T 2gjc_A          194 TLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC  245 (326)
T ss_dssp             HHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred             eeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence                         2347999               99999999998776555

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.53  E-value=1.4e-13  Score=126.03  Aligned_cols=149  Identities=17%  Similarity=0.160  Sum_probs=94.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCCCCceeeEc----hhHHHHHHHcCC-cHHHHhccccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD-SLRTGGTSLTLF----KNGWSVLDALGV-GSDLRSQFLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~-~~~~~g~~~~~~----~~~~~~l~~~g~-~~~~~~~~~~~~~~~  130 (300)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+.. .++..++.....    ....+.++.++- ......    ..++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d----~~gi~  101 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAID----QTGIQ  101 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHH----HHEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhh----hcccc
Confidence            46899999999999999999999999999999985 333222211111    112333344432 221111    11122


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      +...+..       ...........+++..+.+.|.+.+   +|++| ++++|+++..+++.+++|.+.+|..+.||.||
T Consensus       102 f~~l~~~-------kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVV  173 (637)
T 2zxi_A          102 FKMLNTR-------KGKAVQSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVV  173 (637)
T ss_dssp             EEEESTT-------SCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEE
T ss_pred             eeecccc-------cCccccchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEE
Confidence            2110000       0000111223567777777776655   47888 57899999888888778999999899999999


Q ss_pred             EcCCCChHhh
Q 022277          208 GCDGIRSPIA  217 (300)
Q Consensus       208 ~A~G~~s~~r  217 (300)
                      +|+|.++..+
T Consensus       174 LATG~~s~~~  183 (637)
T 2zxi_A          174 VTTGTFLNGV  183 (637)
T ss_dssp             ECCTTCBTCE
T ss_pred             EccCCCccCc
Confidence            9999987544

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.52  E-value=3.3e-14  Score=131.16  Aligned_cols=159  Identities=14%  Similarity=0.124  Sum_probs=88.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC----CceeeEchhHHHHHHHcCCcHHHHhc---------
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG----GTSLTLFKNGWSVLDALGVGSDLRSQ---------  122 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~----g~~~~~~~~~~~~l~~~g~~~~~~~~---------  122 (300)
                      ...+||+|||||++||++|+.|+++|++|+||||.+.++..    +.++....  ....+.+++.+.....         
T Consensus       124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~--~~~~~~~g~~ds~~~~~~~~~~~g~  201 (571)
T 1y0p_A          124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAW--TDQQKAKKITDSPELMFEDTMKGGQ  201 (571)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSS--CHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCC--CHHHHHhCCCCCHHHHHHHHHHhcC
Confidence            34689999999999999999999999999999999876421    11121111  1122222221110000         


Q ss_pred             ----------ccc--ccceEEEcCCCceEEEecCCCCCCCcceee-----ecHHHHHHHHHhcC--CCCeEEeCCeEEEE
Q 022277          123 ----------FLE--IKGMAVKSEDGRELRSFGFKDEDASQEVRA-----VERRILLETLANQL--PPESVQFSSELAKI  183 (300)
Q Consensus       123 ----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~l~~~l~~~~--~g~~i~~~~~v~~i  183 (300)
                                ...  ...+.+....|..+..+.............     .....+.+.|.+.+  .|++|+++++|+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l  281 (571)
T 1y0p_A          202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEV  281 (571)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEE
T ss_pred             CCCCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEe
Confidence                      000  000000000000000000000000000000     23456666666655  48999999999999


Q ss_pred             EEcC-CceEEEEEc--CCc--EEEcCEEEEcCCCChHh
Q 022277          184 ETSG-NGVTILELV--NGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       184 ~~~~-~~~~~v~~~--~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ..++ +.+++|.+.  +|+  ++.||.||+|+|.++..
T Consensus       282 ~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n  319 (571)
T 1y0p_A          282 LKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKN  319 (571)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred             EEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccC
Confidence            9876 666666655  565  68999999999998863

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.52  E-value=2.5e-14  Score=124.53  Aligned_cols=120  Identities=19%  Similarity=0.198  Sum_probs=84.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|||+.+.++  |.          +.. .          .+  ...++.   
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--g~----------~~~-~----------~~--~~~~~~---   64 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLG--GQ----------LAA-L----------YP--EKHIYD---   64 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--HH----------HHH-T----------CT--TSEECC---
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC--Cc----------ccc-c----------CC--Cccccc---
Confidence            46899999999999999999999999999999987652  11          000 0          00  000000   


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                   ......+.+.++.+.+.+.+  .+++++++++|++++.++++.+.|.+.+|+.+.+|.||+|+|..+
T Consensus        65 -------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           65 -------------VAGFPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             -------------STTCSSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             -------------CCCCCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence                         00111244556666665544  378999999999999876644668888888899999999999976


Q ss_pred             Hhh
Q 022277          215 PIA  217 (300)
Q Consensus       215 ~~r  217 (300)
                      ..+
T Consensus       132 ~~~  134 (360)
T 3ab1_A          132 FEP  134 (360)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            443

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.51  E-value=2.3e-13  Score=120.35  Aligned_cols=166  Identities=16%  Similarity=0.140  Sum_probs=91.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCC-Cc--eeeE-chhH------HHHHHHcCCcHHHHhc--
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTG-GT--SLTL-FKNG------WSVLDALGVGSDLRSQ--  122 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~-g~--~~~~-~~~~------~~~l~~~g~~~~~~~~--  122 (300)
                      ..+||+|||||++|+++|+.|+++  |++|+|||+....... +.  +..+ .+..      ....+.++++......  
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  114 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGK  114 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCC
Confidence            458999999999999999999999  9999999998543211 01  1012 1110      0011111111110000  


Q ss_pred             --cccccceE-EEc---CCCceEEEecCCC-----------CC-----CCcceeeecHHHHHHHHHhcC--CCCeEEeCC
Q 022277          123 --FLEIKGMA-VKS---EDGRELRSFGFKD-----------ED-----ASQEVRAVERRILLETLANQL--PPESVQFSS  178 (300)
Q Consensus       123 --~~~~~~~~-~~~---~~~~~~~~~~~~~-----------~~-----~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~  178 (300)
                        .....+.. +..   ..+ .+..-....           ..     .......++...+.+.|.+.+  .|+++++++
T Consensus       115 ~~~~~~~g~l~~~~~~~~~g-~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~  193 (405)
T 3c4n_A          115 TLEVEDRPLLHLLPAGEGSG-LTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNT  193 (405)
T ss_dssp             CCCEEECCEEEEESSCCSSS-CEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSC
T ss_pred             CCcEEeeCeEEehhhHhHCC-CCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCC
Confidence              00000110 010   001 000000000           00     011123467778888887766  489999999


Q ss_pred             eEE---------EEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-Hhhh-hcCCCCC
Q 022277          179 ELA---------KIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAK-WIGFSEP  225 (300)
Q Consensus       179 ~v~---------~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~-~~g~~~~  225 (300)
                      +|+         ++..+++++ .|.+.+| .+.||.||+|+|.+| .+++ .+|+..+
T Consensus       194 ~v~~~~g~~~~~~i~~~~~~v-~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~~~~  249 (405)
T 3c4n_A          194 RAELVPGGVRLHRLTVTNTHQ-IVVHETR-QIRAGVIIVAAGAAGPALVEQGLGLHTR  249 (405)
T ss_dssp             EEEEETTEEEEECBCC--------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCCCCC
T ss_pred             EEEeccccccccceEeeCCeE-EEEECCc-EEECCEEEECCCccHHHHHHHhcCCCCC
Confidence            999         887766654 5777766 799999999999998 6777 7787655

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.50  E-value=5.1e-14  Score=121.24  Aligned_cols=122  Identities=18%  Similarity=0.203  Sum_probs=84.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+.++  |.          +...           .+  ...++.   
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--g~----------~~~~-----------~~--~~~~~~---   55 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPG--GQ----------LTAL-----------YP--EKYIYD---   55 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSC--HH----------HHHT-----------CT--TSEECC---
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC--Ce----------eecc-----------CC--Cceeec---
Confidence            46899999999999999999999999999999987652  11          0000           00  000000   


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                   ......+.+.++.+.+.+.+  .+++++++++|++++.+++. +.|.+.+|+.+.+|.||+|+|..+
T Consensus        56 -------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           56 -------------VAGFPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDL-FKVTTSQGNAYTAKAVIIAAGVGA  121 (335)
T ss_dssp             -------------STTCSSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTE-EEEEETTSCEEEEEEEEECCTTSE
T ss_pred             -------------cCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCE-EEEEECCCCEEEeCEEEECCCCCC
Confidence                         00011234556666655444  26889999999999887664 668888888899999999999976


Q ss_pred             Hhhhhc
Q 022277          215 PIAKWI  220 (300)
Q Consensus       215 ~~r~~~  220 (300)
                      ...+..
T Consensus       122 ~~p~~~  127 (335)
T 2zbw_A          122 FEPRRI  127 (335)
T ss_dssp             EEECCC
T ss_pred             CCCCCC
Confidence            444333

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.49  E-value=1.6e-13  Score=126.00  Aligned_cols=148  Identities=16%  Similarity=0.169  Sum_probs=92.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCCCCceeeEch----hHHHHHHHcC-CcHHHHhccccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD-SLRTGGTSLTLFK----NGWSVLDALG-VGSDLRSQFLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~-~~~~~g~~~~~~~----~~~~~l~~~g-~~~~~~~~~~~~~~~~  130 (300)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+.. .++..++......    ...+.+..++ +......    ..++.
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d----~~gi~   95 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAID----ATGIQ   95 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHH----HHEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHH----hcCCc
Confidence            56999999999999999999999999999999985 2322222112211    1222222222 1111111    11122


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      +...+..       ...........+++..+.+.|.+.+   ++++++ +.+|+++..+++.+.+|.+.+|..+.||.||
T Consensus        96 f~~l~~~-------kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VV  167 (641)
T 3cp8_A           96 FRMLNRS-------KGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAI  167 (641)
T ss_dssp             EEEECSS-------SCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEE
T ss_pred             hhhcccc-------cCccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEE
Confidence            2110000       0000111224577777777776655   478885 5589999888777777889999899999999


Q ss_pred             EcCCCChHh
Q 022277          208 GCDGIRSPI  216 (300)
Q Consensus       208 ~A~G~~s~~  216 (300)
                      +|+|.++..
T Consensus       168 LATG~~s~~  176 (641)
T 3cp8_A          168 LACGTFLNG  176 (641)
T ss_dssp             ECCTTCBTC
T ss_pred             ECcCCCCCc
Confidence            999998754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.49  E-value=2.6e-13  Score=115.28  Aligned_cols=113  Identities=17%  Similarity=0.230  Sum_probs=71.6

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      .|+.+||+||||||+|++||+.|+++|++|+|+|+...   +|...                    ....          
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~---gg~~~--------------------~~~~----------   49 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN---RNRVT--------------------QNSH----------   49 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC---GGGGS--------------------SCBC----------
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC---CCeee--------------------eecC----------
Confidence            45789999999999999999999999999999998742   12100                    0000          


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                            .+  .      ....+...++.+...+.+  .+...+....+..+...+++.+.|.+.+|+++.+|.||+|+|.
T Consensus        50 ------~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs  115 (304)
T 4fk1_A           50 ------GF--I------TRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM  115 (304)
T ss_dssp             ------CS--T------TCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC
T ss_pred             ------Cc--c------CCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC
Confidence                  00  0      000123334444333322  1333344555666666655556688999999999999999997


Q ss_pred             Ch
Q 022277          213 RS  214 (300)
Q Consensus       213 ~s  214 (300)
                      ..
T Consensus       116 ~p  117 (304)
T 4fk1_A          116 QE  117 (304)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.49  E-value=2.7e-12  Score=118.20  Aligned_cols=67  Identities=10%  Similarity=-0.001  Sum_probs=51.4

Q ss_pred             ecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCCCCh-HhhhhcCC
Q 022277          156 VERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDGIRS-PIAKWIGF  222 (300)
Q Consensus       156 i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G~~s-~~r~~~g~  222 (300)
                      ++...+...+.+.+  .|++|+.+++|+++..+++++++|.+.   +|+  .+.||.||+|+|.++ .+.+..|.
T Consensus       185 v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCS
T ss_pred             EchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhcc
Confidence            45666766666655  589999999999999888777777764   343  699999999999998 45555554

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.48  E-value=5.1e-13  Score=128.37  Aligned_cols=74  Identities=26%  Similarity=0.348  Sum_probs=59.1

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-hhhhcCCCCCccc
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPKYV  228 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-~r~~~g~~~~~~~  228 (300)
                      ..+++..+...|.+.+  .|++|+++++|++++.++++++.|.+.+| ++.||.||+|+|.++. +.+.+|...|...
T Consensus       146 g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~~~pl~p  222 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVPLLP  222 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCCCEE
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCCCcccee
Confidence            3467778888887766  58999999999999988777667888877 7999999999999985 4455676655444

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.47  E-value=6e-14  Score=120.42  Aligned_cols=116  Identities=22%  Similarity=0.254  Sum_probs=82.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+.++  |..          ..       .    .+  ...+..   
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--G~~----------~~-------~----~~--~~~~~~---   57 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLG--GQL----------SA-------L----YP--EKYIYD---   57 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--HHH----------HH-------H----CT--TSEECC---
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC--cee----------hh-------c----CC--CceEec---
Confidence            45899999999999999999999999999999998752  210          00       0    00  000000   


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                   ......+.+.++...+.+.+  .+++++++++|++++.++++.+.|.+.+|+ +.+|.||+|+|..+
T Consensus        58 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~  123 (332)
T 3lzw_A           58 -------------VAGFPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGA  123 (332)
T ss_dssp             -------------STTCSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSC
T ss_pred             -------------cCCCCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCc
Confidence                         00111244566666666554  378999999999999887745778888886 99999999999854

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.47  E-value=1.2e-13  Score=119.55  Aligned_cols=128  Identities=18%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      .+||+|||||++|+++|+.|+++|++|+|+|+.+.++  |......+       .+.+....  ....            
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g--g~~~~~~~-------~~~~~~~~--~~~~------------   59 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPG--GAWQHAWH-------SLHLFSPA--GWSS------------   59 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSS--GGGGGSCT-------TCBCSSCG--GGSC------------
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC--CcccCCCC-------CcEecCch--hhhh------------
Confidence            5899999999999999999999999999999998763  21000000       00000000  0000            


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEE-EEEcCCcEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTI-LELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~-v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                       ...+...    ........+.++.+.+.+.+  .+++++++++|++++.+++. +. |.+++| ++.+|.||+|+|.++
T Consensus        60 -~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           60 -IPGWPMP----ASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGER-LRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             -CSSSCCC----CCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTE-EEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             -CCCCCCC----CCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCc-EEEEEeCCC-EEEeCEEEECCCCCC
Confidence             0000000    11112244566666665544  38899999999999988765 66 888887 899999999999877


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       133 ~  133 (357)
T 4a9w_A          133 E  133 (357)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.46  E-value=7.2e-13  Score=121.06  Aligned_cols=133  Identities=23%  Similarity=0.349  Sum_probs=85.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-HcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQ-RLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~-~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+|||||++|+++|+.|+ +.|++|+|+|+++.++  |.        +......++..++......          
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~G--Gt--------w~~~~ypg~~~d~~s~~~~----------   66 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPG--GT--------WYWNRYPGALSDTESHLYR----------   66 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSC--TH--------HHHCCCTTCEEEEEGGGSS----------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCC--Cc--------ccccCCCCceecCCcceee----------
Confidence            4589999999999999999999 8999999999988663  21        0000001110000000000          


Q ss_pred             CceEEEecCCC---CCCCcceeeecHHHHHHHHHhcC--CCC--eEEeCCeEEEEEEcCC-ceEEEEEcCCcEEEcCEEE
Q 022277          136 GRELRSFGFKD---EDASQEVRAVERRILLETLANQL--PPE--SVQFSSELAKIETSGN-GVTILELVNGTRIYANIVI  207 (300)
Q Consensus       136 ~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~l~~~~--~g~--~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~~ad~vV  207 (300)
                            +.+..   ...........+.++.+.+.+.+  .++  .++++++|++++.+++ +.|.|.+.+|+++.||.||
T Consensus        67 ------~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV  140 (540)
T 3gwf_A           67 ------FSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVV  140 (540)
T ss_dssp             ------CCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred             ------eccccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEE
Confidence                  00000   00011112355666666665444  266  8999999999998765 4577999999889999999


Q ss_pred             EcCCCChH
Q 022277          208 GCDGIRSP  215 (300)
Q Consensus       208 ~A~G~~s~  215 (300)
                      +|+|.+|.
T Consensus       141 ~AtG~~s~  148 (540)
T 3gwf_A          141 NAVGLLSA  148 (540)
T ss_dssp             ECCCSCCS
T ss_pred             ECCccccc
Confidence            99998764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.45  E-value=4.7e-12  Score=114.95  Aligned_cols=61  Identities=16%  Similarity=0.319  Sum_probs=44.8

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhc
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                      .+.+.|.+.+  .|++|+++++|++|..+++++.+|++.+|+++.||.||.+.+.....++.+
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll  284 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLL  284 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---------
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhc
Confidence            4555555544  489999999999999999988889999999999999999998877665555

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.43  E-value=1.1e-12  Score=113.42  Aligned_cols=138  Identities=16%  Similarity=0.146  Sum_probs=81.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCcEEEEecCCCcCCCCcee----------e-------Echh----HHHHHHHcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQADSLRTGGTSL----------T-------LFKN----GWSVLDALG  114 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~---~G~~V~viE~~~~~~~~g~~~----------~-------~~~~----~~~~l~~~g  114 (300)
                      +||+|||||++|+++|+.|++   .|++|+|+||++.++......          .       ..+.    ..+.++.+ 
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~-   80 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL-   80 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH-
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH-
Confidence            589999999999999999999   999999999987653211110          0       0111    11111111 


Q ss_pred             CcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEE
Q 022277          115 VGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILE  194 (300)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~  194 (300)
                           .....    ...+.  .. ........ ........-....+.+.|.+.+ |++|+++++|++++.++++ +.|.
T Consensus        81 -----~~~g~----~~~~~--~~-~~~~~~~~-~~~~~~~~~g~~~l~~~l~~~~-g~~i~~~~~V~~i~~~~~~-~~v~  145 (342)
T 3qj4_A           81 -----LAYGV----LRPLS--SP-IEGMVMKE-GDCNFVAPQGISSIIKHYLKES-GAEVYFRHRVTQINLRDDK-WEVS  145 (342)
T ss_dssp             -----HHTTS----CEECC--SC-EETCCC---CCEEEECTTCTTHHHHHHHHHH-TCEEESSCCEEEEEECSSS-EEEE
T ss_pred             -----HhCCC----eecCc--hh-hcceeccC-CccceecCCCHHHHHHHHHHhc-CCEEEeCCEEEEEEEcCCE-EEEE
Confidence                 00000    00000  00 00000000 0000000111235666666655 7899999999999998777 5688


Q ss_pred             EcCCcEEEcCEEEEcCCC
Q 022277          195 LVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       195 ~~~g~~~~ad~vV~A~G~  212 (300)
                      +.+|+.+.+|.||+|+..
T Consensus       146 ~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          146 KQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             ESSSCCEEESEEEECSCH
T ss_pred             ECCCCEEEcCEEEECCCH
Confidence            988877899999999974

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.43  E-value=9.1e-13  Score=111.21  Aligned_cols=110  Identities=20%  Similarity=0.250  Sum_probs=77.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ++||+|||||++|+++|..|+++|++|+|+|+.........                       ..              
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~-----------------------~~--------------   44 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFAS-----------------------HS--------------   44 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCS-----------------------CC--------------
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccch-----------------------hh--------------
Confidence            47999999999999999999999999999998763210000                       00              


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                          ..      ..........++.+.+.+.+   ++++++ +.+|++++.+++. +.|.+.+|+++.+|.||+|+|..+
T Consensus        45 ----~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           45 ----HG------FLGQDGKAPGEIIAEARRQIERYPTIHWV-EGRVTDAKGSFGE-FIVEIDGGRRETAGRLILAMGVTD  112 (297)
T ss_dssp             ----CS------STTCTTCCHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEEETTE-EEEEETTSCEEEEEEEEECCCCEE
T ss_pred             ----cC------CcCCCCCCHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCCCCC
Confidence                00      00011234456666655544   255555 4599999988766 668999998899999999999876


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       113 ~~  114 (297)
T 3fbs_A          113 EL  114 (297)
T ss_dssp             EC
T ss_pred             CC
Confidence            44

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.43  E-value=2.4e-12  Score=114.68  Aligned_cols=142  Identities=19%  Similarity=0.140  Sum_probs=83.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-CCce---eeEchhHHHHHHHcCC--cHHHHhccccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-GGTS---LTLFKNGWSVLDALGV--GSDLRSQFLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-~g~~---~~~~~~~~~~l~~~g~--~~~~~~~~~~~~~~~  130 (300)
                      +.+||+|||||++|+++|+.|+++|++|+|||+.+.... .+..   ......+...++.+|+  +...   ......+.
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~~~~~   97 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNEWPSE---EFGYFGHY   97 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCCSCHH---HHCEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhhhhhh---ccccccee
Confidence            457999999999999999999999999999999873321 1221   2234456666677754  2221   12223333


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCC-eEEEEEEcCCceEEEEEcCCcEEEcCEEE
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSS-ELAKIETSGNGVTILELVNGTRIYANIVI  207 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~-~v~~i~~~~~~~~~v~~~~g~~~~ad~vV  207 (300)
                      +.......+ .+.  .. .......+++..+...|.+.+  .|++++++. .+.+++.             ....+|+||
T Consensus        98 ~~~~~~~~~-~~~--~~-~~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l~~-------------~~~~ad~VV  160 (430)
T 3ihm_A           98 YYVGGPQPM-RFY--GD-LKAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDLEG-------------LSEQYDLLV  160 (430)
T ss_dssp             EEECSSSCE-EEE--EE-EEEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGHHH-------------HHTTSSEEE
T ss_pred             EEECCCCcc-ccc--hh-cCCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhhhh-------------hcccCCEEE
Confidence            332222111 110  00 012345678888877777666  477776632 1111100             012589999


Q ss_pred             EcCCCChHhhh
Q 022277          208 GCDGIRSPIAK  218 (300)
Q Consensus       208 ~A~G~~s~~r~  218 (300)
                      +|+|.+|.++.
T Consensus       161 ~AdG~~S~~~~  171 (430)
T 3ihm_A          161 VCTGKYALGKV  171 (430)
T ss_dssp             ECCCCTTGGGG
T ss_pred             ECCCCcchHHh
Confidence            99999997764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.42  E-value=1.5e-12  Score=117.10  Aligned_cols=55  Identities=29%  Similarity=0.336  Sum_probs=45.7

Q ss_pred             HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+.+.|.+.+..++|+++++|++|+.++++ +.|++.+|+++.||.||+|+.....
T Consensus       236 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g~~~~ad~vi~a~p~~~~  290 (470)
T 3i6d_A          236 TLVEEIEKQLKLTKVYKGTKVTKLSHSGSC-YSLELDNGVTLDADSVIVTAPHKAA  290 (470)
T ss_dssp             HHHHHHHHTCCSEEEECSCCEEEEEECSSS-EEEEESSSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHhcCCCEEEeCCceEEEEEcCCe-EEEEECCCCEEECCEEEECCCHHHH
Confidence            566677776644689999999999988877 5699999988999999999987653

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.41  E-value=1.2e-12  Score=119.75  Aligned_cols=133  Identities=20%  Similarity=0.261  Sum_probs=84.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|||+++.++  |.        +......|+..++......           
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G--Gt--------w~~~~ypg~~~dv~s~~y~-----------   78 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVG--GV--------WYWNRYPGARCDVESIDYS-----------   78 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--TH--------HHHCCCTTCBCSSCTTTSS-----------
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCC--Cc--------cccCCCCCceeCCCchhcc-----------
Confidence            46899999999999999999999999999999988763  21        1100111111111000000           


Q ss_pred             ceEEEecCCCC---CCCcceeeecHHHHHHHHHhcC--CCC--eEEeCCeEEEEEEcCC-ceEEEEEcCCcEEEcCEEEE
Q 022277          137 RELRSFGFKDE---DASQEVRAVERRILLETLANQL--PPE--SVQFSSELAKIETSGN-GVTILELVNGTRIYANIVIG  208 (300)
Q Consensus       137 ~~~~~~~~~~~---~~~~~~~~i~~~~l~~~l~~~~--~g~--~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~~ad~vV~  208 (300)
                           +.+...   ..........+.++.+.+.+.+  .++  +++++++|++++.+++ ..|.|.+.+|+++.||+||+
T Consensus        79 -----~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~  153 (549)
T 4ap3_A           79 -----YSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVV  153 (549)
T ss_dssp             -----CCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEE
T ss_pred             -----cccccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEE
Confidence                 000000   0000111245556655554433  255  7999999999998765 35779999998999999999


Q ss_pred             cCCCChH
Q 022277          209 CDGIRSP  215 (300)
Q Consensus       209 A~G~~s~  215 (300)
                      |+|..|.
T Consensus       154 AtG~~s~  160 (549)
T 4ap3_A          154 AAGPLSN  160 (549)
T ss_dssp             CCCSEEE
T ss_pred             CcCCCCC
Confidence            9997653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.40  E-value=1.7e-12  Score=116.31  Aligned_cols=150  Identities=20%  Similarity=0.193  Sum_probs=83.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhc-ccccc------
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQ-FLEIK------  127 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~------  127 (300)
                      ..+||+|||||++|+++|..|++.|+  +|+|||+.+.++  |. +.......   ..+++....... ..+..      
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~G--G~-~~~~~~~~---~~~~ip~~~~~~~~~~~~~g~~~~   78 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG--GV-WNYTSTLS---NKLPVPSTNPILTTEPIVGPAALP   78 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS--TT-CSCCSCCC---SCCCSSBCCTTCCCCCBCCSSSCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCC--Ce-ecCCCCCC---cccccccccccccccccccccccC
Confidence            46899999999999999999999999  999999987663  11 00000000   000000000000 00000      


Q ss_pred             c--eEEEc----CCCceEEEecCCCCC-CCcceeeecHHHHHHHHHhcCC--CCeEEeCCeEEEEEEcCCceEEEEEcC-
Q 022277          128 G--MAVKS----EDGRELRSFGFKDED-ASQEVRAVERRILLETLANQLP--PESVQFSSELAKIETSGNGVTILELVN-  197 (300)
Q Consensus       128 ~--~~~~~----~~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~l~~~~~--g~~i~~~~~v~~i~~~~~~~~~v~~~~-  197 (300)
                      .  ..++.    ......  ..+.... .........+..+.+.|.+.+.  +..++++++|++++..+++ |.|++.+ 
T Consensus        79 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~-~~V~~~~~  155 (447)
T 2gv8_A           79 VYPSPLYRDLQTNTPIEL--MGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS-WVVTYKGT  155 (447)
T ss_dssp             BCCCCCCTTCBCSSCHHH--HSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE-EEEEEEES
T ss_pred             CccCchhhhhccCCCHHH--hccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCe-EEEEEeec
Confidence            0  00000    000000  0000000 0011123456666666655442  5679999999999887665 6677765 


Q ss_pred             --Cc---EEEcCEEEEcCCCChH
Q 022277          198 --GT---RIYANIVIGCDGIRSP  215 (300)
Q Consensus       198 --g~---~~~ad~vV~A~G~~s~  215 (300)
                        |+   ++.+|.||+|+|.+|.
T Consensus       156 ~~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          156 KAGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             STTCCEEEEEESEEEECCCSSSS
T ss_pred             CCCCeeEEEEeCEEEECCCCCCC
Confidence              66   7999999999999764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.39  E-value=2e-12  Score=118.26  Aligned_cols=133  Identities=19%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|||+++.++  |.        +......++..+.......           
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~G--Gt--------w~~~~yPg~~~d~~~~~y~-----------   66 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVG--GT--------WYWNRYPGCRLDTESYAYG-----------   66 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--TH--------HHHCCCTTCBCSSCHHHHC-----------
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC--Cc--------cccCCCCceeecCchhhcc-----------
Confidence            56899999999999999999999999999999998763  21        1000011110000000000           


Q ss_pred             ceEEEecCCCC---CCCcceeeecHHHHHHHHHhcC--CCC--eEEeCCeEEEEEEcCC-ceEEEEEcCCcEEEcCEEEE
Q 022277          137 RELRSFGFKDE---DASQEVRAVERRILLETLANQL--PPE--SVQFSSELAKIETSGN-GVTILELVNGTRIYANIVIG  208 (300)
Q Consensus       137 ~~~~~~~~~~~---~~~~~~~~i~~~~l~~~l~~~~--~g~--~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~~ad~vV~  208 (300)
                           +.+...   ..........+.++.+.+.+.+  .++  .++++++|++++.+++ +.|.|.+.+|+++.||+||+
T Consensus        67 -----~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~  141 (545)
T 3uox_A           67 -----YFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLIS  141 (545)
T ss_dssp             -----HHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEE
T ss_pred             -----cccCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEE
Confidence                 000000   0001111244555555554433  144  7999999999987654 46789999998999999999


Q ss_pred             cCCCChH
Q 022277          209 CDGIRSP  215 (300)
Q Consensus       209 A~G~~s~  215 (300)
                      |+|..|.
T Consensus       142 AtG~~s~  148 (545)
T 3uox_A          142 ATGPLSA  148 (545)
T ss_dssp             CCCSCBC
T ss_pred             CcCCCCC
Confidence            9997653

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.39  E-value=2.4e-12  Score=109.84  Aligned_cols=111  Identities=21%  Similarity=0.260  Sum_probs=77.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      +.+||+|||||++|+++|+.|+++|++|+|+|+.  +  +|....                                  .
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~--gg~~~~----------------------------------~   55 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--P--GGQLTE----------------------------------A   55 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--T--TGGGGG----------------------------------C
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--C--CCeecc----------------------------------c
Confidence            4589999999999999999999999999999998  3  221000                                  0


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      ...  ..      ..........++.+.+.+.+  .++++++ ++|+++..+++. +.|.+.+|..+.+|.||+|+|...
T Consensus        56 ~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~-~~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           56 GIV--DD------YLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDE-FVVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             CEE--CC------STTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--C-EEEEESSSCEEEEEEEEECCCCEE
T ss_pred             ccc--cc------cCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCE-EEEEECCCCEEEcCEEEECcCCCC
Confidence            000  00      00011144556666655444  3789998 999999887665 558888888999999999999875


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       126 ~  126 (323)
T 3f8d_A          126 R  126 (323)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.38  E-value=1.2e-12  Score=120.02  Aligned_cols=134  Identities=23%  Similarity=0.336  Sum_probs=83.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+.++  |.        +......++..+......            
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G--G~--------w~~~~~pg~~~d~~~~~~------------   72 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG--GV--------WYWNRYPGARCDIESIEY------------   72 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--TH--------HHHCCCTTCBCSSCTTTS------------
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC--Cc--------ccccCCCceeeccccccc------------
Confidence            46899999999999999999999999999999998763  21        000000010000000000            


Q ss_pred             ceEEEecCCCC---CCCcceeeecHHHHHHHHHh---cCC-CCeEEeCCeEEEEEEcCC-ceEEEEEcCCcEEEcCEEEE
Q 022277          137 RELRSFGFKDE---DASQEVRAVERRILLETLAN---QLP-PESVQFSSELAKIETSGN-GVTILELVNGTRIYANIVIG  208 (300)
Q Consensus       137 ~~~~~~~~~~~---~~~~~~~~i~~~~l~~~l~~---~~~-g~~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~~ad~vV~  208 (300)
                          .+.+...   ..........+.++.+.+..   ... +..++++++|++++.+++ +.|.|.+++|++++||.||+
T Consensus        73 ----~~~f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~  148 (542)
T 1w4x_A           73 ----CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIM  148 (542)
T ss_dssp             ----SCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEE
T ss_pred             ----ccccChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEE
Confidence                0000000   00000112345555555543   331 467999999999998754 45779999998899999999


Q ss_pred             cCCCChHh
Q 022277          209 CDGIRSPI  216 (300)
Q Consensus       209 A~G~~s~~  216 (300)
                      |+|.+|..
T Consensus       149 AtG~~s~p  156 (542)
T 1w4x_A          149 ASGQLSVP  156 (542)
T ss_dssp             CCCSCCCC
T ss_pred             CcCCCCCC
Confidence            99987743

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.37  E-value=5.3e-13  Score=121.45  Aligned_cols=56  Identities=13%  Similarity=0.083  Sum_probs=43.1

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEc-CCceEEEEEcCC-c--EEEcC-EEEEcCCCChH
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETS-GNGVTILELVNG-T--RIYAN-IVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g-~--~~~ad-~vV~A~G~~s~  215 (300)
                      .+.+.|.+.+  .|++|+++++|+++..+ ++.+++|.+.++ +  ++.|+ .||+|+|.++.
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~  265 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAY  265 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhh
Confidence            5666665554  48999999999999988 566666766543 2  58995 99999999884

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.37  E-value=3.1e-12  Score=108.85  Aligned_cols=112  Identities=17%  Similarity=0.219  Sum_probs=78.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      +||+|||||++|+++|+.|++.|+ +|+|+|+.. +  +|.... .                  ..              
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~--gg~~~~-~------------------~~--------------   45 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-P--GGQITG-S------------------SE--------------   45 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-T--TCGGGG-C------------------SC--------------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-C--Cccccc-c------------------cc--------------
Confidence            699999999999999999999999 999999953 2  221000 0                  00              


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                       ...+       +.....+.+.++.+.+.+.+  .++++++ ++|++++.+++. +.|.+.+|+.+.+|.||+|+|.++.
T Consensus        46 -~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~-~~v~~~~g~~~~~~~vv~AtG~~~~  115 (311)
T 2q0l_A           46 -IENY-------PGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSH-FVILAEDGKTFEAKSVIIATGGSPK  115 (311)
T ss_dssp             -BCCS-------TTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTE-EEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             -cccC-------CCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCE-EEEEEcCCCEEECCEEEECCCCCCC
Confidence             0000       00011245556666655444  3788887 789999887765 5577888888999999999998764


Q ss_pred             h
Q 022277          216 I  216 (300)
Q Consensus       216 ~  216 (300)
                      .
T Consensus       116 ~  116 (311)
T 2q0l_A          116 R  116 (311)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.35  E-value=8.2e-12  Score=110.93  Aligned_cols=56  Identities=14%  Similarity=0.111  Sum_probs=44.6

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                      .+.+.|.+.+  .|++|+++++|++|..+++++.+|.++ |+++.||.||.|+|.+...
T Consensus       197 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~  254 (425)
T 3ka7_A          197 GIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATA  254 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHH
Confidence            3555555555  489999999999999988776667775 6789999999999987654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.35  E-value=4e-12  Score=109.25  Aligned_cols=117  Identities=18%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC--cCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS--LRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~--~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      .+.+||+|||||++|+++|+.|+++|++|+|+|+.+.  ...+|....                    ..          
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~--------------------~~----------   69 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT--------------------TT----------   69 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG--------------------SS----------
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc--------------------ch----------
Confidence            3568999999999999999999999999999999762  111221000                    00          


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE---cCCcEEEcCEEEE
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNGTRIYANIVIG  208 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~~~~ad~vV~  208 (300)
                          ..  ..+     +.....+...++.+.+.+.+  .++++++++ |+++..+++. +.+.+   .++..+.+|.||+
T Consensus        70 ----~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~-~~v~~~~~~~~~~~~~d~vvl  136 (338)
T 3itj_A           70 ----EI--ENF-----PGFPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKP-FKLWTEFNEDAEPVTTDAIIL  136 (338)
T ss_dssp             ----EE--CCS-----TTCTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSS-EEEEETTCSSSCCEEEEEEEE
T ss_pred             ----hh--ccc-----CCCcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCE-EEEEEEecCCCcEEEeCEEEE
Confidence                00  000     00011244556666555544  388999988 9999887766 44666   3667899999999


Q ss_pred             cCCCChH
Q 022277          209 CDGIRSP  215 (300)
Q Consensus       209 A~G~~s~  215 (300)
                      |+|..+.
T Consensus       137 AtG~~~~  143 (338)
T 3itj_A          137 ATGASAK  143 (338)
T ss_dssp             CCCEEEC
T ss_pred             CcCCCcC
Confidence            9998653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.34  E-value=9.8e-13  Score=121.24  Aligned_cols=161  Identities=19%  Similarity=0.220  Sum_probs=86.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCC----CceeeEc-----------hhHHHHHHHc---C--C-
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG----GTSLTLF-----------KNGWSVLDAL---G--V-  115 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~----g~~~~~~-----------~~~~~~l~~~---g--~-  115 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+.++..    +.++...           .....+++.+   +  . 
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN  204 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            4689999999999999999999999999999999876421    1111110           0001111110   1  0 


Q ss_pred             cHHHHhcccc--ccceEEEcCCCceEEEecC-CCCCCCccee----eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc
Q 022277          116 GSDLRSQFLE--IKGMAVKSEDGRELRSFGF-KDEDASQEVR----AVERRILLETLANQL--PPESVQFSSELAKIETS  186 (300)
Q Consensus       116 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~  186 (300)
                      ...+......  ...+.+....+..+..+.. ..........    ......+.+.|.+.+  .|++|+++++|+++..+
T Consensus       205 ~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~  284 (572)
T 1d4d_A          205 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILED  284 (572)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC
T ss_pred             CHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEEC
Confidence            0000000000  0000000000000000000 0000000000    022445666666555  48999999999999877


Q ss_pred             C-CceEEEEEc--CCc--EEEcCEEEEcCCCChHhh
Q 022277          187 G-NGVTILELV--NGT--RIYANIVIGCDGIRSPIA  217 (300)
Q Consensus       187 ~-~~~~~v~~~--~g~--~~~ad~vV~A~G~~s~~r  217 (300)
                      + +.+++|.+.  +|+  .+.||.||+|+|.++..+
T Consensus       285 ~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~  320 (572)
T 1d4d_A          285 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNN  320 (572)
T ss_dssp             --CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred             CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCH
Confidence            6 666666665  564  689999999999988643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.34  E-value=6.3e-12  Score=107.65  Aligned_cols=114  Identities=20%  Similarity=0.251  Sum_probs=76.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+. .+  +|.... .                  ..             
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~--gg~~~~-~------------------~~-------------   51 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MP--GGQIAW-S------------------EE-------------   51 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CT--TGGGGG-C------------------SC-------------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CC--Cccccc-c------------------cc-------------
Confidence            4589999999999999999999999999999998 33  221000 0                  00             


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEc--CCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETS--GNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                        ...+  .    +. ...+.+.++.+.+.+.+  .++++++ .+|++++.+  ++..+.|.+.+|+.+.+|.||+|+|.
T Consensus        52 --~~~~--~----~~-~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~  121 (325)
T 2q7v_A           52 --VENF--P----GF-PEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA  121 (325)
T ss_dssp             --BCCS--T----TC-SSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE
T ss_pred             --cccC--C----CC-CCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC
Confidence              0000  0    00 01134445555554443  3788887 689999876  44324477778888999999999998


Q ss_pred             ChH
Q 022277          213 RSP  215 (300)
Q Consensus       213 ~s~  215 (300)
                      ++.
T Consensus       122 ~~~  124 (325)
T 2q7v_A          122 DPR  124 (325)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.34  E-value=7.7e-12  Score=112.42  Aligned_cols=149  Identities=16%  Similarity=0.209  Sum_probs=81.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCc---EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEE
Q 022277           59 EDIVIVGAGIAGLATAVSLQR---LGIG---SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVK  132 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~---~G~~---V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  132 (300)
                      +||+|||||++|+++|..|++   .|++   |+|||+.+.++  |. +......-  ....++..    ....+......
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G--G~-w~~~~~~g--~~~~g~~~----~~~~y~~l~~~   73 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG--GQ-WNYTWRTG--LDENGEPV----HSSMYRYLWSN   73 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC--GG-GSCCSCCS--BCTTSSBC----CCCCCTTCBCS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC--CE-eecCCCCC--ccccCCCC----cCccccchhhc
Confidence            699999999999999999999   9999   99999998763  21 10000000  00000000    00000000000


Q ss_pred             cCCC-ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCe--EEeCCeEEEEEEcCC-ceEEEEEcC---C--cEE
Q 022277          133 SEDG-RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPES--VQFSSELAKIETSGN-GVTILELVN---G--TRI  201 (300)
Q Consensus       133 ~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~--i~~~~~v~~i~~~~~-~~~~v~~~~---g--~~~  201 (300)
                      .... ..+..+++...........+.+..+.+.+.+.+  .+++  ++++++|++++..++ +.|.|++.+   |  .++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~  153 (464)
T 2xve_A           74 GPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSE  153 (464)
T ss_dssp             SCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEE
Confidence            0000 000000000000000022355667766666544  2666  999999999988765 246677765   4  478


Q ss_pred             EcCEEEEcCCCChHh
Q 022277          202 YANIVIGCDGIRSPI  216 (300)
Q Consensus       202 ~ad~vV~A~G~~s~~  216 (300)
                      .+|.||+|+|.+|..
T Consensus       154 ~~d~VVvAtG~~s~p  168 (464)
T 2xve_A          154 EFDYVVCCTGHFSTP  168 (464)
T ss_dssp             EESEEEECCCSSSSB
T ss_pred             EcCEEEECCCCCCCC
Confidence            999999999976644

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.33  E-value=2.8e-12  Score=110.17  Aligned_cols=114  Identities=21%  Similarity=0.211  Sum_probs=77.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC----CCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA----DSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVK  132 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~----~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  132 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.    ...  +|.                    +....      ...
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~--gg~--------------------~~~~~------~~~   58 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAP--GGQ--------------------LTTTT------DVE   58 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCT--TCG--------------------GGGCS------EEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCC--Cce--------------------eeecc------ccc
Confidence            4589999999999999999999999999999982    221  111                    00000      000


Q ss_pred             cCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcC
Q 022277          133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCD  210 (300)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~  210 (300)
                                .+     +.....+.+.++.+.+.+.+  .++++++++ |++++.+++. +.|.+ +|..+.+|.||+|+
T Consensus        59 ----------~~-----~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~-~~v~~-~~~~~~~~~vv~A~  120 (333)
T 1vdc_A           59 ----------NF-----PGFPEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKP-FKLFT-DSKAILADAVILAI  120 (333)
T ss_dssp             ----------CS-----TTCTTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSS-EEEEC-SSEEEEEEEEEECC
T ss_pred             ----------cC-----CCCccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCE-EEEEE-CCcEEEcCEEEECC
Confidence                      00     00001244556666665544  478999887 9999877665 44777 77789999999999


Q ss_pred             CCChHh
Q 022277          211 GIRSPI  216 (300)
Q Consensus       211 G~~s~~  216 (300)
                      |.++..
T Consensus       121 G~~~~~  126 (333)
T 1vdc_A          121 GAVAKR  126 (333)
T ss_dssp             CEEECC
T ss_pred             CCCcCC
Confidence            987654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.32  E-value=1.2e-11  Score=111.67  Aligned_cols=63  Identities=22%  Similarity=0.353  Sum_probs=47.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceee------------E---chhHHHHHHHcCCcHHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT------------L---FKNGWSVLDALGVGSDL  119 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~------------~---~~~~~~~l~~~g~~~~~  119 (300)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++.++..-.+..            +   .+...++++++|+.+.+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~   92 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRI   92 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCccee
Confidence            568999999999999999999999999999999987742111110            1   24567888899886443

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.31  E-value=2.3e-11  Score=112.49  Aligned_cols=163  Identities=23%  Similarity=0.224  Sum_probs=88.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCC------CCceeeEch-hHH-----HHHHHc-CCc-HHHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRT------GGTSLTLFK-NGW-----SVLDAL-GVG-SDLR  120 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~------~g~~~~~~~-~~~-----~~l~~~-g~~-~~~~  120 (300)
                      ..+||+|||||++||++|+.|++.|  .+|+||||......      +|....+.. .++     +.++.- ++. ....
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   83 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            4589999999999999999999999  99999999864421      111111111 111     111110 110 0000


Q ss_pred             hcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceee--ecHHHHHHHHHhcC--CC-CeEEeCCeEEEEE
Q 022277          121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRA--VERRILLETLANQL--PP-ESVQFSSELAKIE  184 (300)
Q Consensus       121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--i~~~~l~~~l~~~~--~g-~~i~~~~~v~~i~  184 (300)
                      ...          ....++.+.. ..+... ...+.........+.  .....+.+.|.+.+  .+ ++|+++++|+++.
T Consensus        84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~-~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~  162 (602)
T 1kf6_A           84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVN-VRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDIL  162 (602)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBC-CBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCccc-ccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEE
Confidence            000          0000111111 111100 000000000000000  11346667776655  35 8999999999999


Q ss_pred             EcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHhhhhc
Q 022277          185 TSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       185 ~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~r~~~  220 (300)
                      .+++.+.+|..   .+|+  .+.|+.||+|+|.+|.++...
T Consensus       163 ~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~  203 (602)
T 1kf6_A          163 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYN  203 (602)
T ss_dssp             EETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSB
T ss_pred             EeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCc
Confidence            88776555543   5675  689999999999999876544

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.31  E-value=2.1e-11  Score=112.49  Aligned_cols=159  Identities=23%  Similarity=0.303  Sum_probs=86.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEch---hHHH-----HHHHc-CCc-HHHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFK---NGWS-----VLDAL-GVG-SDLR  120 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~~---~~~~-----~l~~~-g~~-~~~~  120 (300)
                      ..+||+|||||++||++|+.|++.|.+|+|+||....+.      +|....+..   .+.+     .++.- ++. .++.
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   85 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            458999999999999999999999999999999875421      111111111   1111     11111 111 1110


Q ss_pred             hcc----------ccccceEEEc-CCCceEEEecCCCCC-------CCcceee--ecHHHHHHHHHhcC--CCCeEEeCC
Q 022277          121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDED-------ASQEVRA--VERRILLETLANQL--PPESVQFSS  178 (300)
Q Consensus       121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~--i~~~~l~~~l~~~~--~g~~i~~~~  178 (300)
                      ...          ....++.+.. ..+.... ..+....       .....+.  ..-..+.+.|.+.+  .|++|++++
T Consensus        86 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~-~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~  164 (588)
T 2wdq_A           86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQ-RPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW  164 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCE-ECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETE
T ss_pred             HHHHHhHHHHHHHHHHcCCCcccCCCCcEee-eecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEEEeCc
Confidence            000          0001111111 1111110 0000000       0000000  11245666665554  489999999


Q ss_pred             eEEEEEEc-CCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          179 ELAKIETS-GNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       179 ~v~~i~~~-~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      +|+++..+ ++.+.+|..   .+|+  .+.|+.||+|+|.++..
T Consensus       165 ~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          165 YALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             EEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence            99999986 555666664   4564  68999999999998864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.31  E-value=1.7e-11  Score=106.72  Aligned_cols=135  Identities=15%  Similarity=0.210  Sum_probs=78.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+||+|||||++|+++|+.|++.|+ +|+|||+.+ ++  +. +...+...      .+    ..........      
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~G--g~-~~~~~~~~------~~----~~~~~~~~~~------   62 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VG--HS-FKHWPKST------RT----ITPSFTSNGF------   62 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TT--HH-HHTSCTTC------BC----SSCCCCCGGG------
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CC--Cc-cccCcccc------cc----cCcchhcccC------
Confidence            35899999999999999999999999 999999987 32  11 00000000      00    0000000000      


Q ss_pred             CceEEEecCCCCCCC----cceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEc
Q 022277          136 GRELRSFGFKDEDAS----QEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGC  209 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~----~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A  209 (300)
                      +.  ..+........    .....+.+..+.+.+.+.+  .+++++++++|+++..++++ +.|.+.++ ++.+|.||+|
T Consensus        63 g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-~~~~d~vVlA  138 (369)
T 3d1c_A           63 GM--PDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAY-YTIATTTE-TYHADYIFVA  138 (369)
T ss_dssp             TC--CCTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS-EEEEESSC-CEEEEEEEEC
T ss_pred             Cc--hhhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe-EEEEeCCC-EEEeCEEEEC
Confidence            00  00000000000    0011234445555444333  38899999999999987665 55878777 5999999999


Q ss_pred             CCCChH
Q 022277          210 DGIRSP  215 (300)
Q Consensus       210 ~G~~s~  215 (300)
                      +|.++.
T Consensus       139 tG~~~~  144 (369)
T 3d1c_A          139 TGDYNF  144 (369)
T ss_dssp             CCSTTS
T ss_pred             CCCCCc
Confidence            998763

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.29  E-value=1.4e-12  Score=116.21  Aligned_cols=51  Identities=20%  Similarity=0.403  Sum_probs=40.0

Q ss_pred             HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                      .+.+.+.+.. + +|+++++|++|+.+++++ .|.+.+|++++||.||+|+|..
T Consensus       208 ~l~~~~~~~~-g-~i~~~~~V~~i~~~~~~v-~v~~~~g~~~~ad~vi~a~~~~  258 (431)
T 3k7m_X          208 DLVDAMSQEI-P-EIRLQTVVTGIDQSGDVV-NVTVKDGHAFQAHSVIVATPMN  258 (431)
T ss_dssp             HHHHHHHTTC-S-CEESSCCEEEEECSSSSE-EEEETTSCCEEEEEEEECSCGG
T ss_pred             HHHHHHHhhC-C-ceEeCCEEEEEEEcCCeE-EEEECCCCEEEeCEEEEecCcc
Confidence            3344444443 5 999999999999887774 4889898889999999999953

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.29  E-value=1.8e-11  Score=104.09  Aligned_cols=112  Identities=25%  Similarity=0.324  Sum_probs=76.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ++||+|||||++|+++|..|++.|++|+|+|+..    +|....                    .      ..+.     
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~----gG~~~~--------------------~------~~~~-----   45 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF----GGQILD--------------------T------VDIE-----   45 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST----TGGGGG--------------------C------CEEC-----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC----Cceecc--------------------c------cccc-----
Confidence            3799999999999999999999999999998642    221000                    0      0000     


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC--ceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN--GVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~--~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                         .+        .......+..+.+.+.+.+  .+++++++++|+.+..+.+  +.+.|.+++|+.+.+|.||+|+|.+
T Consensus        46 ---~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           46 ---NY--------ISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             ---CB--------TTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             ---cc--------cCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence               00        0001133445555554433  3789999999999976532  2466888888889999999999986


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      +.
T Consensus       115 ~~  116 (310)
T 1fl2_A          115 WR  116 (310)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.29  E-value=1.7e-11  Score=104.63  Aligned_cols=111  Identities=25%  Similarity=0.340  Sum_probs=74.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.. +  +|.... .                  ..             
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~--gg~~~~-~------------------~~-------------   59 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-A--GGLTAE-A------------------PL-------------   59 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-T--TGGGGG-C------------------SC-------------
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-C--Cccccc-c------------------ch-------------
Confidence            46899999999999999999999999999999943 2  221000 0                  00             


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                        +..+  +    .  +..+...++.+.+.+.+  .++++++ .+|++++.+++. +.|.+ ++..+.+|.||+|+|.++
T Consensus        60 --~~~~--~----~--~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~-~~v~~-~~~~~~~~~li~AtG~~~  126 (319)
T 3cty_A           60 --VENY--L----G--FKSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGG-FDIET-NDDTYHAKYVIITTGTTH  126 (319)
T ss_dssp             --BCCB--T----T--BSSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTE-EEEEE-SSSEEEEEEEEECCCEEE
T ss_pred             --hhhc--C----C--CcccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCE-EEEEE-CCCEEEeCEEEECCCCCc
Confidence              0000  0    0  01233445555554433  3778887 789999887665 44666 556899999999999865


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       127 ~  127 (319)
T 3cty_A          127 K  127 (319)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.29  E-value=1.1e-11  Score=106.62  Aligned_cols=112  Identities=18%  Similarity=0.280  Sum_probs=74.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.. +  +|. +....                 .              
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~--gg~-~~~~~-----------------~--------------   57 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-F--GGA-LMTTT-----------------D--------------   57 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-C--SCG-GGSCS-----------------C--------------
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-C--CCc-eeccc-----------------h--------------
Confidence            56899999999999999999999999999999752 2  221 00000                 0              


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEE-EEcCCcEEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTIL-ELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v-~~~~g~~~~ad~vV~A~G~~  213 (300)
                        ...+       +.....+.+.++.+.+.+.+  .++++++++ |++++. ++. +.| .+.+|+.+.+|.||+|+|.+
T Consensus        58 --~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~-~~v~~~~~g~~~~~d~lviAtG~~  125 (335)
T 2a87_A           58 --VENY-------PGFRNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGP-LKSVVTADGQTHRARAVILAMGAA  125 (335)
T ss_dssp             --BCCS-------TTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSS-SEEEEETTSCEEEEEEEEECCCEE
T ss_pred             --hhhc-------CCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCc-EEEEEeCCCCEEEeCEEEECCCCC
Confidence              0000       00001134445555554433  378999887 888877 333 446 77788889999999999986


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      +.
T Consensus       126 ~~  127 (335)
T 2a87_A          126 AR  127 (335)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.29  E-value=1.1e-11  Score=111.74  Aligned_cols=53  Identities=19%  Similarity=0.144  Sum_probs=41.1

Q ss_pred             HHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          161 LLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       161 l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      +.+.|.+.+  .|++|+++++|++|+.++++++.|.++ +.++.||.||+|++.+.
T Consensus       236 l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          236 LPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLR-DSSLEADHVISAIPASV  290 (477)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECS-SCEEEESEEEECSCHHH
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEEC-CeEEEcCEEEECCCHHH
Confidence            555555554  378999999999999877665667664 44799999999998754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.28  E-value=2e-11  Score=106.22  Aligned_cols=35  Identities=26%  Similarity=0.560  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            46899999999999999999999999999999976

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.28  E-value=1.6e-11  Score=109.04  Aligned_cols=58  Identities=16%  Similarity=0.286  Sum_probs=43.7

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHhhhhcC
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIG  221 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~r~~~g  221 (300)
                      .+.+.|.+.+  .|++|+++++|++|..++++ + | +.+|+++.||.||+|+|.+... +.++
T Consensus       190 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-v-V-~~~g~~~~ad~Vv~a~~~~~~~-~ll~  249 (421)
T 3nrn_A          190 AVIDELERIIMENKGKILTRKEVVEINIEEKK-V-Y-TRDNEEYSFDVAISNVGVRETV-KLIG  249 (421)
T ss_dssp             HHHHHHHHHHHTTTCEEESSCCEEEEETTTTE-E-E-ETTCCEEECSEEEECSCHHHHH-HHHC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEECCE-E-E-EeCCcEEEeCEEEECCCHHHHH-HhcC
Confidence            4555555544  48999999999999987776 4 5 5567789999999999987643 3444

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.28  E-value=2.2e-11  Score=111.26  Aligned_cols=36  Identities=28%  Similarity=0.475  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||++||++|+.|++ |.+|+|+||.+..
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~   42 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVT   42 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            46899999999999999999999 9999999998764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.28  E-value=4.9e-11  Score=110.41  Aligned_cols=159  Identities=23%  Similarity=0.252  Sum_probs=88.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEc---hhHHHH-----HHHc-CCc-HHHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLF---KNGWSV-----LDAL-GVG-SDLR  120 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~---~~~~~~-----l~~~-g~~-~~~~  120 (300)
                      ..+||||||||++||++|+.|++.|.+|+|+||....+.      +|....+.   ..+++.     ++.- ++. .+..
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v   96 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI   96 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            458999999999999999999999999999999865321      11111111   122221     1110 111 1100


Q ss_pred             hcc----------ccccceEEEc-CCCceEEEecCCCCCCC--------cceee--ecHHHHHHHHHhcC--CCCeEEeC
Q 022277          121 SQF----------LEIKGMAVKS-EDGRELRSFGFKDEDAS--------QEVRA--VERRILLETLANQL--PPESVQFS  177 (300)
Q Consensus       121 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~--i~~~~l~~~l~~~~--~g~~i~~~  177 (300)
                      ...          ....++.+.. ..+..... .+......        ...+.  .....+...|.+.+  .|++|+++
T Consensus        97 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~~~  175 (621)
T 2h88_A           97 HYMTEQAPAAVIELENYGMPFSRTEEGKIYQR-AFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVE  175 (621)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEE-CCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEEET
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceecc-ccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCEEEEc
Confidence            000          0001111111 11111100 00000000        00000  12346777776665  48999999


Q ss_pred             CeEEEEEEcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          178 SELAKIETSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       178 ~~v~~i~~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      +.|+++..+++.+.+|..   .+|+  .+.|+.||+|+|.++.+
T Consensus       176 ~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          176 YFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             EEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             eEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            999999887776666655   3565  68999999999998864

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.27  E-value=2.8e-11  Score=108.94  Aligned_cols=61  Identities=13%  Similarity=0.032  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc-CCcEEEcCEEEEcCCCChHhhhh
Q 022277          158 RRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV-NGTRIYANIVIGCDGIRSPIAKW  219 (300)
Q Consensus       158 ~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~-~g~~~~ad~vV~A~G~~s~~r~~  219 (300)
                      ...+.+.|.+.+  .|++++++++| ++..+++.+.+|... ++..+.+|.||+|+|.++.+...
T Consensus       118 g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~  181 (472)
T 2e5v_A          118 GREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEY  181 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSS
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCcc
Confidence            345666665544  48999999999 998877766556553 22357899999999999977543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.27  E-value=1.7e-11  Score=104.60  Aligned_cols=112  Identities=19%  Similarity=0.327  Sum_probs=74.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.. +  +|. +...                  .  .           
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~--gg~-~~~~------------------~--~-----------   48 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-K--GGQ-LTTT------------------T--E-----------   48 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-T--TGG-GGGC------------------S--B-----------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-C--Cce-Eecc------------------h--h-----------
Confidence            45899999999999999999999999999999652 2  221 0000                  0  0           


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                        ...+       +.....+.+..+.+.+.+.+  .++++++++ ++.++.+++. +.+ +.++..+.+|.||+|+|..+
T Consensus        49 --~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~-~~v-~~~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           49 --VENW-------PGDPNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRP-FRL-NGDNGEYTCDALIIATGASA  116 (320)
T ss_dssp             --CCCS-------TTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSS-EEE-EESSCEEEEEEEEECCCEEE
T ss_pred             --hhhC-------CCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCE-EEE-EeCCCEEEcCEEEECCCCCc
Confidence              0000       00001133445555544433  378998886 8888876665 445 66777899999999999865


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       117 ~  117 (320)
T 1trb_A          117 R  117 (320)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.27  E-value=3.9e-11  Score=102.11  Aligned_cols=36  Identities=36%  Similarity=0.495  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            357999999999999999999999999999999864

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.27  E-value=5.2e-11  Score=107.39  Aligned_cols=54  Identities=20%  Similarity=0.203  Sum_probs=43.9

Q ss_pred             HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+.+.|.+.+..++|+++++|++|+.++++ +.|++.+| ++.||.||+|++.+..
T Consensus       237 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~~~g-~~~ad~vV~a~p~~~~  290 (475)
T 3lov_A          237 SLIERLEEVLERSEIRLETPLLAISREDGR-YRLKTDHG-PEYADYVLLTIPHPQV  290 (475)
T ss_dssp             HHHHHHHHHCSSCEEESSCCCCEEEEETTE-EEEECTTC-CEEESEEEECSCHHHH
T ss_pred             HHHHHHHhhccCCEEEcCCeeeEEEEeCCE-EEEEECCC-eEECCEEEECCCHHHH
Confidence            456666666644799999999999988777 55888888 7999999999987653

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.26  E-value=8.3e-11  Score=107.28  Aligned_cols=53  Identities=19%  Similarity=0.180  Sum_probs=42.4

Q ss_pred             HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      .+.+.|.+.+ |++|+++++|++|+.+++++. |.+.+|+++.||.||+|.+...
T Consensus       216 ~l~~~l~~~l-g~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          216 QVSERIMDLL-GDRVKLERPVIYIDQTRENVL-VETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHH-GGGEESSCCEEEEECSSSSEE-EEETTSCEEEESEEEECSCGGG
T ss_pred             HHHHHHHHHc-CCcEEcCCeeEEEEECCCeEE-EEECCCeEEEeCEEEECCCHHH
Confidence            3444454444 678999999999998877744 8899998999999999999765

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.25  E-value=3.4e-11  Score=109.73  Aligned_cols=57  Identities=18%  Similarity=0.186  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          158 RRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       158 ~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      ...+.+.|.+.+++.+|+++++|++|..+++..+.|++.+|++++||.||+|.+...
T Consensus       201 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~  257 (516)
T 1rsg_A          201 YDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSV  257 (516)
T ss_dssp             HHHHHHHHHTTSCGGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHH
T ss_pred             HHHHHHHHHHhCCCCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHH
Confidence            455666777776556899999999999864333668999998899999999998654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.25  E-value=2.9e-11  Score=110.04  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=41.5

Q ss_pred             HHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      ..+.+.|.+.+  .|++|+++++|++|..+++.   +++.+|+++.||.||.+.-.
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~---v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT---VTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE---EEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccCCE---EEEcCCCEEECCEEEECCCH
Confidence            46778888777  37889999999999877655   67889999999999977653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.24  E-value=5.5e-11  Score=101.14  Aligned_cols=115  Identities=19%  Similarity=0.254  Sum_probs=72.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC--CCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT--GGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~--~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+||||||||+++|+.|+++|++|+|+|+....+.  +|.                    +     + ....+.+ 
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~--------------------~-----~-~~~~i~~-   55 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQ--------------------L-----T-TTTIIEN-   55 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCG--------------------G-----G-GSSEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCC--------------------c-----C-ChHHhhh-
Confidence            358999999999999999999999999999998763211  111                    0     0 0000000 


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                             +  .    + ....+...++.+.+.+.+  .+..+.. ..+.......+. ..+.+.++..+.+|.||+|+|.
T Consensus        56 -------~--~----g-~~~~i~~~~l~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~liiATG~  119 (314)
T 4a5l_A           56 -------F--P----G-FPNGIDGNELMMNMRTQSEKYGTTIIT-ETIDHVDFSTQP-FKLFTEEGKEVLTKSVIIATGA  119 (314)
T ss_dssp             -------S--T----T-CTTCEEHHHHHHHHHHHHHHTTCEEEC-CCEEEEECSSSS-EEEEETTCCEEEEEEEEECCCE
T ss_pred             -------c--c----C-CcccCCHHHHHHHHHHHHhhcCcEEEE-eEEEEeecCCCc-eEEEECCCeEEEEeEEEEcccc
Confidence                   0  0    0 001234445555544433  2556654 456666655555 3367788889999999999997


Q ss_pred             Ch
Q 022277          213 RS  214 (300)
Q Consensus       213 ~s  214 (300)
                      ..
T Consensus       120 ~~  121 (314)
T 4a5l_A          120 TA  121 (314)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.23  E-value=7.6e-11  Score=106.86  Aligned_cols=55  Identities=7%  Similarity=0.064  Sum_probs=42.6

Q ss_pred             HHHHHHHhcC--CC-CeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          160 ILLETLANQL--PP-ESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~--~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+.+.|.+.+  .| ++|+++++|++|+.++++ +.|.+.+|+++.||.||+|+|....
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~ad~vI~a~~~~~l  313 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA-ARVTARDGREFVAKRVVCTIPLNVL  313 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS-EEEEETTCCEEEEEEEEECCCGGGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE-EEEEECCCCEEEcCEEEECCCHHHH
Confidence            3444555544  24 779999999999987776 4588888888999999999997553

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.23  E-value=1.1e-10  Score=108.78  Aligned_cols=57  Identities=19%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      .+...|.+.+  .|++|++++.|+++..+++.+.+|..   .+|+  .+.|+.||+|+|.++.+
T Consensus       159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence            5666666555  38999999999999887666555554   4565  58999999999998854

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.22  E-value=5.4e-11  Score=108.43  Aligned_cols=114  Identities=25%  Similarity=0.324  Sum_probs=78.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ...+||+|||||++|+++|+.|++.|++|+|+|+..    +|....          ..++.                   
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~----GG~~~~----------~~~~~-------------------  256 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF----GGQVLD----------TVDIE-------------------  256 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST----TGGGTT----------CSCBC-------------------
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC----CCcccc----------ccccc-------------------
Confidence            357899999999999999999999999999999632    221000          00000                   


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC--CceEEEEEcCCcEEEcCEEEEcCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~--~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                           .+        .........++.+.+.+.+  .+++++.+++|+.+..+.  ++.+.|.+.+|..+.+|.||+|+|
T Consensus       257 -----~~--------~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG  323 (521)
T 1hyu_A          257 -----NY--------ISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATG  323 (521)
T ss_dssp             -----CB--------TTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCC
T ss_pred             -----cc--------CCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCC
Confidence                 00        0001133445555554443  388999999999997542  234668888888899999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      .++.
T Consensus       324 ~~~~  327 (521)
T 1hyu_A          324 AKWR  327 (521)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            8653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.21  E-value=6.4e-11  Score=106.46  Aligned_cols=146  Identities=18%  Similarity=0.131  Sum_probs=80.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-----CcEEEEecCCCcCCCCc----eeeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-----IGSLVIEQADSLRTGGT----SLTLFKNGWSVLDALGVGSDLRSQFLEIK  127 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-----~~V~viE~~~~~~~~g~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  127 (300)
                      ..+||+|||||++|+++|..|++.|     ++|+|||+.+.++....    +..+...   +++.+..   +........
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~---~~~~l~~---~~~p~~~~~  102 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQIS---FLKDLVS---LRNPTSPYS  102 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSC---TTSSSST---TTCTTCTTS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcc---hhhcccc---ccCCCCCCC
Confidence            4579999999999999999999999     99999999987641110    0000000   0000000   000000000


Q ss_pred             ceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC--CceE--EEEEcCCc--
Q 022277          128 GMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVT--ILELVNGT--  199 (300)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~--~~~~--~v~~~~g~--  199 (300)
                      ...+....+..   ..+    .........+.++.+.+...+  .+++++++++|++++.++  ++.|  .|.+.+|+  
T Consensus       103 ~~~~l~~~~~~---~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~  175 (463)
T 3s5w_A          103 FVNYLHKHDRL---VDF----INLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGE  175 (463)
T ss_dssp             HHHHHHHTTCH---HHH----HHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSC
T ss_pred             hhHhhhhcCce---eec----ccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCc
Confidence            00000000000   000    000011234556666554433  268999999999998762  3333  57777765  


Q ss_pred             --EEEcCEEEEcCCCChH
Q 022277          200 --RIYANIVIGCDGIRSP  215 (300)
Q Consensus       200 --~~~ad~vV~A~G~~s~  215 (300)
                        ++.+|.||+|+|....
T Consensus       176 ~~~~~~d~lVlAtG~~p~  193 (463)
T 3s5w_A          176 ELVRTTRALVVSPGGTPR  193 (463)
T ss_dssp             EEEEEESEEEECCCCEEC
T ss_pred             eEEEEeCEEEECCCCCCC
Confidence              8999999999998543

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.18  E-value=1.4e-10  Score=108.27  Aligned_cols=152  Identities=20%  Similarity=0.264  Sum_probs=83.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH---H-cCCcEEEEecCCCcCCC----Cc-eee--Ec-------hhHH-HHHH----H-
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQ---R-LGIGSLVIEQADSLRTG----GT-SLT--LF-------KNGW-SVLD----A-  112 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~---~-~G~~V~viE~~~~~~~~----g~-~~~--~~-------~~~~-~~l~----~-  112 (300)
                      ..+||||||||++||++|+.|+   + .|.+|+|+||......+    |. +..  +.       ..+. ..++    . 
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~g  100 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDM  100 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHHT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999   6 89999999998743211    11 111  21       1111 1111    1 


Q ss_pred             cCCc-HHHHhcc----------ccccceEEEc-CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC---CCC-eEEe
Q 022277          113 LGVG-SDLRSQF----------LEIKGMAVKS-EDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPE-SVQF  176 (300)
Q Consensus       113 ~g~~-~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~---~g~-~i~~  176 (300)
                      .++. .++....          ....++.+.. ..+...     .   .+.....+....+.+.|.+.+   +|+ +|++
T Consensus       101 ~~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~-----~---~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~  172 (643)
T 1jnr_A          101 MGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYV-----R---EGQWQIMIHGESYKPIIAEAAKMAVGEENIYE  172 (643)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBC-----B---SSSSCEEEEETTHHHHHHHHHHHHHCGGGEEC
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCcc-----C---CCccccCCCcHHHHHHHHHHHHhcCCCcEEEe
Confidence            1111 1110000          0001111111 111100     0   000001122223344444333   289 9999


Q ss_pred             CCeEEEEEEcCC---ceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          177 SSELAKIETSGN---GVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       177 ~~~v~~i~~~~~---~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ++.|+++..+++   .+.+|..   .+|+  .+.|+.||+|+|.++..
T Consensus       173 ~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~  220 (643)
T 1jnr_A          173 RVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLL  220 (643)
T ss_dssp             SEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             cCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccccc
Confidence            999999998766   7666654   4565  68999999999998853

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.16  E-value=2.8e-10  Score=96.69  Aligned_cols=110  Identities=19%  Similarity=0.279  Sum_probs=72.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEE-EecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLV-IEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~v-iE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      .++||+|||||++|+++|..|+++|++|+| +|+ +.+  +|.... .                  ..            
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~--gG~~~~-~------------------~~------------   48 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMP--GGQITS-S------------------SE------------   48 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SST--TGGGGG-C------------------SC------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCC--Cceeee-e------------------ce------------
Confidence            468999999999999999999999999999 999 433  221000 0                  00            


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcC--CceEEEEE-cCCcEEEcCEEEEcC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSG--NGVTILEL-VNGTRIYANIVIGCD  210 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~--~~~~~v~~-~~g~~~~ad~vV~A~  210 (300)
                         ..  .+     +.....+...++...+.+.+  .+++++++ +|+++ .++  +. +.+.+ .++ .+.+|.||+|+
T Consensus        49 ---~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~-~~v~~~~~~-~~~~d~lvlAt  114 (315)
T 3r9u_A           49 ---IE--NY-----PGVAQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGS-FTIKLEGGK-TELAKAVIVCT  114 (315)
T ss_dssp             ---BC--CS-----TTCCSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSC-EEEEETTSC-EEEEEEEEECC
T ss_pred             ---ec--cC-----CCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCc-EEEEEecCC-EEEeCEEEEee
Confidence               00  00     00011244556666665544  37888888 88888 655  44 54423 334 89999999999


Q ss_pred             CCCh
Q 022277          211 GIRS  214 (300)
Q Consensus       211 G~~s  214 (300)
                      |...
T Consensus       115 G~~~  118 (315)
T 3r9u_A          115 GSAP  118 (315)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9744

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.15  E-value=1.1e-10  Score=103.82  Aligned_cols=112  Identities=17%  Similarity=0.266  Sum_probs=72.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      +.+||+|||||++|+++|..|++.|.  +|+|+|+.+.......     +          +...+..             
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-----~----------l~~~~~~-------------   54 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP-----P----------LSKAYLA-------------   54 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG-----G----------GGTTTTT-------------
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCC-----C----------CcHHHhC-------------
Confidence            35899999999999999999999998  7999998875321000     0          0000000             


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                       +.          ....... ..   +.+.+.+.  +++++++++|+.++.++..   |.+.+|+.+.+|.||+|+|..+
T Consensus        55 -~~----------~~~~~~~-~~---~~~~~~~~--gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           55 -GK----------ATAESLY-LR---TPDAYAAQ--NIQLLGGTQVTAINRDRQQ---VILSDGRALDYDRLVLATGGRP  114 (431)
T ss_dssp             -TC----------SCSGGGB-SS---CHHHHHHT--TEEEECSCCEEEEETTTTE---EEETTSCEEECSEEEECCCEEE
T ss_pred             -CC----------CChHHhc-cc---CHHHHHhC--CCEEEeCCEEEEEECCCCE---EEECCCCEEECCEEEEcCCCCc
Confidence             00          0000000 00   11222222  8899999999999876543   7778888899999999999865


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       115 ~~  116 (431)
T 1q1r_A          115 RP  116 (431)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.15  E-value=2.2e-10  Score=100.42  Aligned_cols=109  Identities=17%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      +..+|+|||||++|+++|..|...+.+|+|+|+.+......      +.....+          .....           
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~------~~l~~~l----------~g~~~-----------   60 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYR------PRLNEII----------AKNKS-----------   60 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCG------GGHHHHH----------HSCCC-----------
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCccc------ChhhHHH----------cCCCC-----------
Confidence            57899999999999999999977799999999998653110      0000000          00000           


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                   ..... ..   ..+.+.+.  +++++++++|++++.++..   |.+++|+++.+|.||+|+|...
T Consensus        61 -------------~~~l~-~~---~~~~~~~~--~i~~~~~~~V~~id~~~~~---v~~~~g~~~~yd~lvlAtG~~p  116 (385)
T 3klj_A           61 -------------IDDIL-IK---KNDWYEKN--NIKVITSEFATSIDPNNKL---VTLKSGEKIKYEKLIIASGSIA  116 (385)
T ss_dssp             -------------GGGTB-SS---CHHHHHHT--TCEEECSCCEEEEETTTTE---EEETTSCEEECSEEEECCCEEE
T ss_pred             -------------HHHcc-CC---CHHHHHHC--CCEEEeCCEEEEEECCCCE---EEECCCCEEECCEEEEecCCCc
Confidence                         00000 00   11122222  8899999999999876654   7888998999999999999743

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.14  E-value=1e-09  Score=98.30  Aligned_cols=38  Identities=42%  Similarity=0.670  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..+||+|||||++||++|+.|++.|++|+|+|+++.++
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            45799999999999999999999999999999998774

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.12  E-value=1.7e-09  Score=95.81  Aligned_cols=101  Identities=24%  Similarity=0.342  Sum_probs=78.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||..|+.+|..|++.|.+|+++|+.+.+.....                 ...+                  
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~-----------------~~~~------------------  196 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVA-----------------GEAL------------------  196 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTS-----------------CHHH------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhc-----------------CHHH------------------
Confidence            57899999999999999999999999999999987632100                 0000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                          ...+.+.+.+.  |++++++++|++++.+++++..|.+.+|+++.||.||.|+|....
T Consensus       197 --------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          197 --------------------SEFYQAEHRAH--GVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             --------------------HHHHHHHHHHT--TCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             --------------------HHHHHHHHHhC--CCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence                                01222333332  999999999999998777776799999999999999999998653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.12  E-value=4.8e-10  Score=98.26  Aligned_cols=108  Identities=21%  Similarity=0.320  Sum_probs=80.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||++|+.+|..|++.|.+|+|+|+.+.+.....                 ...                  
T Consensus       144 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~-----------------~~~------------------  188 (384)
T 2v3a_A          144 GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLL-----------------HPA------------------  188 (384)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTS-----------------CHH------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhccc-----------------CHH------------------
Confidence            367999999999999999999999999999999886522100                 000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-  215 (300)
                                          -...+.+.+.+  .|++++++++|++++.++++ +.|.+.+|+++++|.||+|+|..+. 
T Consensus       189 --------------------~~~~l~~~l~~--~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          189 --------------------AAKAVQAGLEG--LGVRFHLGPVLASLKKAGEG-LEAHLSDGEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             --------------------HHHHHHHHHHT--TTCEEEESCCEEEEEEETTE-EEEEETTSCEEEESEEEECSCEEECC
T ss_pred             --------------------HHHHHHHHHHH--cCCEEEeCCEEEEEEecCCE-EEEEECCCCEEECCEEEECcCCCcCH
Confidence                                01123333333  38999999999999887665 4588889989999999999998764 


Q ss_pred             -hhhhcCC
Q 022277          216 -IAKWIGF  222 (300)
Q Consensus       216 -~r~~~g~  222 (300)
                       +.+.+|+
T Consensus       246 ~l~~~~g~  253 (384)
T 2v3a_A          246 ELAFAAGL  253 (384)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHCCC
Confidence             3444444

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.12  E-value=8.8e-10  Score=98.74  Aligned_cols=55  Identities=9%  Similarity=-0.041  Sum_probs=43.0

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEc--CCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETS--GNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+.+.|.+.+  .|++|+++++|++|..+  ++++++|.+ +|+++.||.||.|.|.++.
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            4455555444  48899999999999987  666666776 4778999999999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.11  E-value=2e-10  Score=106.97  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL------GIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~------G~~V~viE~~~~~   93 (300)
                      ..+||||||||++||++|+.|+++      |.+|+||||....
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            468999999999999999999998      9999999998643

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.11  E-value=6.4e-10  Score=100.58  Aligned_cols=54  Identities=15%  Similarity=0.291  Sum_probs=43.1

Q ss_pred             HHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEEcCEEEEcCCCC
Q 022277          159 RILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIR  213 (300)
Q Consensus       159 ~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G~~  213 (300)
                      ..|.+.|.+.+...+|+++++|++|+.++++ +.|.+.+|   ++++||.||+|....
T Consensus       239 ~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-v~v~~~~g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          239 DRIYYAFQDRIGTDNIVFGAEVTSMKNVSEG-VTVEYTAGGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             THHHHHHHHHHCGGGEETTCEEEEEEEETTE-EEEEEEETTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHHHhcCCCeEEECCEEEEEEEcCCe-EEEEEecCCeEEEEECCEEEECCCHH
Confidence            4567777776633689999999999998887 44888776   579999999999764

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.10  E-value=2e-09  Score=95.45  Aligned_cols=38  Identities=34%  Similarity=0.594  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~~~   94 (300)
                      ..+||+|||||++||++|+.|+++| .+|+|+|+++.++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVG   43 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            5689999999999999999999999 8999999998774

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.10  E-value=1.5e-09  Score=96.86  Aligned_cols=54  Identities=13%  Similarity=0.098  Sum_probs=42.0

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEE-cCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIET-SGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                      ++.+.|.+.+  .|++|+++++|++|.. +++++++|.+.+|+++.||.||.|.|..
T Consensus       257 ~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          257 GIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            3444444444  4899999999999998 5667788999999899999999999976

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.10  E-value=1.2e-10  Score=104.34  Aligned_cols=110  Identities=15%  Similarity=0.227  Sum_probs=67.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+|||||++|+++|+.|++.  |.+|+|+|+.+.......  .+.             ..+ .             
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~--~~p-------------~~~-~-------------   52 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC--GIP-------------YVV-E-------------   52 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC----------------------------------------
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc--CCc-------------ccc-C-------------
Confidence            357999999999999999999998  889999999986521110  000             000 0             


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC-cEEEcCEEEEcCCCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG-TRIYANIVIGCDGIR  213 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~~ad~vV~A~G~~  213 (300)
                       +.          .......  .  ...+.+.+. .+++++++++|++++.+.   +.|.+.++ ..+.+|.||+|+|..
T Consensus        53 -~~----------~~~~~~~--~--~~~~~~~~~-~gi~v~~~~~v~~i~~~~---~~v~~~~g~~~~~~d~lviAtG~~  113 (449)
T 3kd9_A           53 -GL----------STPDKLM--Y--YPPEVFIKK-RGIDLHLNAEVIEVDTGY---VRVRENGGEKSYEWDYLVFANGAS  113 (449)
T ss_dssp             ----------------------------CTHHHH-TTCEEETTCEEEEECSSE---EEEECSSSEEEEECSEEEECCCEE
T ss_pred             -CC----------CCHHHhh--h--cCHHHHHHh-cCcEEEecCEEEEEecCC---CEEEECCceEEEEcCEEEECCCCC
Confidence             00          0000000  0  000111111 288999999999885433   34677777 479999999999965


Q ss_pred             h
Q 022277          214 S  214 (300)
Q Consensus       214 s  214 (300)
                      .
T Consensus       114 p  114 (449)
T 3kd9_A          114 P  114 (449)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.09  E-value=8e-10  Score=99.09  Aligned_cols=101  Identities=22%  Similarity=0.332  Sum_probs=77.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+...                  .++                 
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~------------------~~~-----------------  210 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMD------------------LEV-----------------  210 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSC------------------HHH-----------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccC------------------HHH-----------------
Confidence            357899999999999999999999999999999886522100                  000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                           ...+.+.+.+.  |++++++++|++++.++++ +.+.+.+|+++.+|.||+|+|..+..
T Consensus       211 ---------------------~~~l~~~l~~~--Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          211 ---------------------SRAAERVFKKQ--GLTIRTGVRVTAVVPEAKG-ARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             ---------------------HHHHHHHHHHH--TCEEECSCCEEEEEEETTE-EEEEETTSCEEEESEEEECSCEEECC
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEECCEEEEEEEeCCE-EEEEECCCeEEEcCEEEECcCCCcCC
Confidence                                 11233334333  8999999999999987665 44777788889999999999987653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.09  E-value=2.1e-09  Score=94.79  Aligned_cols=109  Identities=21%  Similarity=0.318  Sum_probs=81.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|.+.|.+|+++|+.+.+.....                 ...                  
T Consensus       141 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~-----------------~~~------------------  185 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVV-----------------TPE------------------  185 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS-----------------CHH------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhcc-----------------CHH------------------
Confidence            357899999999999999999999999999999886521100                 000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-  215 (300)
                                          -...+.+.+.+.  |++++++++|++++.+++++..|.+.+|+++.||.||.|+|.... 
T Consensus       186 --------------------~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~  243 (404)
T 3fg2_P          186 --------------------ISSYFHDRHSGA--GIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV  243 (404)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred             --------------------HHHHHHHHHHhC--CcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCH
Confidence                                001222333332  899999999999998777777799999999999999999998543 


Q ss_pred             -hhhhcCC
Q 022277          216 -IAKWIGF  222 (300)
Q Consensus       216 -~r~~~g~  222 (300)
                       +.+.+|+
T Consensus       244 ~l~~~~gl  251 (404)
T 3fg2_P          244 EIAAAAGL  251 (404)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhCCC
Confidence             3444443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.09  E-value=4.2e-10  Score=99.49  Aligned_cols=108  Identities=12%  Similarity=0.171  Sum_probs=71.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+|||||++|+++|..|++.|.  +|+|+|+.+.......     +-...++..         ..  ...      
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-----~~~~~~~~~---------~~--~~~------   63 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP-----PLSKDFMAH---------GD--AEK------   63 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG-----GGGTHHHHH---------CC--GGG------
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC-----CCCHHHhCC---------Cc--hhh------
Confidence            56899999999999999999999998  4999999875421100     000001100         00  000      


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                        . .+.       ..+. .+++++++++|+.++.+...   |.+.+|+++.+|.||+|+|...
T Consensus        64 ------------------~-~~~-------~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           64 ------------------I-RLD-------CKRA-PEVEWLLGVTAQSFDPQAHT---VALSDGRTLPYGTLVLATGAAP  113 (408)
T ss_dssp             ------------------S-BCC-------CTTS-CSCEEEETCCEEEEETTTTE---EEETTSCEEECSEEEECCCEEE
T ss_pred             ------------------h-hHH-------HHHH-CCCEEEcCCEEEEEECCCCE---EEECCCCEEECCEEEECCCCCC
Confidence                              0 000       0011 27899999999999865433   7778888899999999999865


Q ss_pred             Hh
Q 022277          215 PI  216 (300)
Q Consensus       215 ~~  216 (300)
                      ..
T Consensus       114 ~~  115 (408)
T 2gqw_A          114 RA  115 (408)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.09  E-value=6.7e-10  Score=98.22  Aligned_cols=107  Identities=18%  Similarity=0.310  Sum_probs=71.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCc--EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIG--SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~--V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+|+|||||++|+++|..|+++|.+  |+|+|+.+.......     +          +...+......           
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~-----~----------l~~~~~~g~~~-----------   56 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP-----S----------LSKAVLDGSLE-----------   56 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG-----G----------GGTHHHHTSSS-----------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc-----c----------ccHHHhCCCCC-----------
Confidence            5899999999999999999999987  999999886521100     0          00111100000           


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                   ....  ....   +.+.+.  +++++++++|+.+..+...   |.+.+|+++.+|.||+|+|...
T Consensus        57 -------------~~~~--~~~~---~~~~~~--~i~~~~~~~v~~id~~~~~---v~~~~g~~~~~d~lvlAtG~~p  111 (410)
T 3ef6_A           57 -------------RPPI--LAEA---DWYGEA--RIDMLTGPEVTALDVQTRT---ISLDDGTTLSADAIVIATGSRA  111 (410)
T ss_dssp             -------------SCCB--SSCT---THHHHT--TCEEEESCCEEEEETTTTE---EEETTSCEEECSEEEECCCEEE
T ss_pred             -------------HHHh--cCCH---HHHHHC--CCEEEeCCEEEEEECCCCE---EEECCCCEEECCEEEEccCCcc
Confidence                         0000  0001   111122  8899999999999876543   7788888999999999999753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.08  E-value=5.5e-10  Score=98.92  Aligned_cols=110  Identities=21%  Similarity=0.367  Sum_probs=72.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc--EEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG--SLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~--V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+|||||++|+++|..|+++|.+  |+|+|+.+.+.....                   .+......         
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-------------------~l~~~~~~---------   59 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP-------------------PLSKEYLA---------   59 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG-------------------GGGTTTTT---------
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc-------------------cCCHHHHc---------
Confidence            468999999999999999999999987  999999886421100                   00000000         


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                       +          ........ ...   .+.+.+  .+++++.+++|+.+..+...   |.+.+|+.+.+|.||+|+|...
T Consensus        60 -~----------~~~~~~~~-~~~---~~~~~~--~~i~~~~~~~v~~id~~~~~---v~~~~g~~~~~d~lvlAtG~~~  119 (415)
T 3lxd_A           60 -R----------EKTFERIC-IRP---AQFWED--KAVEMKLGAEVVSLDPAAHT---VKLGDGSAIEYGKLIWATGGDP  119 (415)
T ss_dssp             -T----------SSCSGGGB-SSC---HHHHHH--TTEEEEETCCEEEEETTTTE---EEETTSCEEEEEEEEECCCEEC
T ss_pred             -C----------CCCHHHhc-cCC---HHHHHH--CCcEEEeCCEEEEEECCCCE---EEECCCCEEEeeEEEEccCCcc
Confidence             0          00000000 111   111222  27899999999999776543   7788888999999999999643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.08  E-value=8.2e-10  Score=98.85  Aligned_cols=102  Identities=19%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.                  +...                  
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~~~------------------  209 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS------------------FDPM------------------  209 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHH------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh------------------hhHH------------------
Confidence            3579999999999999999999999999999998765210                  0000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                          ....+.+.|.+.  |++++++++|++++.++++.+.|.+.+|+++.+|.||+|+|..+..
T Consensus       210 --------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          210 --------------------ISETLVEVMNAE--GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             --------------------HHHHHHHHHHHH--SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             --------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                                011333444443  8999999999999886655455888899889999999999987643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.08  E-value=7.1e-10  Score=98.91  Aligned_cols=109  Identities=16%  Similarity=0.242  Sum_probs=71.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~---~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..||+|||||++|+++|..|++   .|++|+|||+.+....       .+.......  +.        ..         
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~-------~~~~~~~~~--g~--------~~---------   57 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF-------VPSNPWVGV--GW--------KE---------   57 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEEC-------GGGHHHHHH--TS--------SC---------
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcc-------cCCcccccc--Cc--------cC---------
Confidence            4799999999999999999999   8999999999885311       111000000  00        00         


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                     ..... .   .+.+.+.+  .+++++ ..+|++++.+++.   |.+++|+++.+|.||+|+|..+
T Consensus        58 ---------------~~~~~-~---~l~~~~~~--~gv~~~-~~~v~~id~~~~~---V~~~~g~~i~~d~lviAtG~~~  112 (437)
T 3sx6_A           58 ---------------RDDIA-F---PIRHYVER--KGIHFI-AQSAEQIDAEAQN---ITLADGNTVHYDYLMIATGPKL  112 (437)
T ss_dssp             ---------------HHHHE-E---ECHHHHHT--TTCEEE-CSCEEEEETTTTE---EEETTSCEEECSEEEECCCCEE
T ss_pred             ---------------HHHHH-H---HHHHHHHH--CCCEEE-EeEEEEEEcCCCE---EEECCCCEEECCEEEECCCCCc
Confidence                           00000 0   01122222  278887 4689999876553   7888888899999999999866


Q ss_pred             Hhh
Q 022277          215 PIA  217 (300)
Q Consensus       215 ~~r  217 (300)
                      ...
T Consensus       113 ~~~  115 (437)
T 3sx6_A          113 AFE  115 (437)
T ss_dssp             CGG
T ss_pred             Ccc
Confidence            543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.06  E-value=6.6e-10  Score=99.53  Aligned_cols=112  Identities=17%  Similarity=0.188  Sum_probs=70.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .||+|||||++|+++|..|+++  |.+|+|+|+.+.++....+......                              +
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~------------------------------~   52 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFN------------------------------H   52 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhc------------------------------C
Confidence            5999999999999999999998  8999999999865311110000000                              0


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~~~~ad~vV~A~G~~s~  215 (300)
                      ..    .     ..........    +.+.+.  +++++++++|++++.++.. +.+.. .++..+.+|.||+|+|....
T Consensus        53 ~~----~-----~~~~~~~~~~----~~~~~~--gi~~~~~~~V~~id~~~~~-v~v~~~~~~~~~~~d~lviAtG~~p~  116 (452)
T 3oc4_A           53 TI----N-----ELHEARYITE----EELRRQ--KIQLLLNREVVAMDVENQL-IAWTRKEEQQWYSYDKLILATGASQF  116 (452)
T ss_dssp             -----------------CCCCH----HHHHHT--TEEEECSCEEEEEETTTTE-EEEEETTEEEEEECSEEEECCCCCBC
T ss_pred             CC----C-----CHHHhhcCCH----HHHHHC--CCEEEECCEEEEEECCCCE-EEEEecCceEEEEcCEEEECCCcccC
Confidence            00    0     0000000011    122222  7889999999999877665 33432 24457999999999998654


Q ss_pred             h
Q 022277          216 I  216 (300)
Q Consensus       216 ~  216 (300)
                      .
T Consensus       117 ~  117 (452)
T 3oc4_A          117 S  117 (452)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.06  E-value=1.5e-09  Score=102.73  Aligned_cols=49  Identities=24%  Similarity=0.322  Sum_probs=40.3

Q ss_pred             HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      .+.+.|.+   +++|+++++|++|+.++++ +.|++.+|+++.||.||+|+..
T Consensus       535 ~l~~aLa~---gl~I~l~t~V~~I~~~~~~-v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          535 VIIEKLAE---GLDIQLKSPVQCIDYSGDE-VQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             HHHHHHHT---TSCEESSCCEEEEECSSSS-EEEEETTCCEEEESEEEECCCH
T ss_pred             HHHHHHHh---CCcEEcCCeeEEEEEcCCE-EEEEECCCcEEEcCEEEECCCH
Confidence            45555543   6699999999999988877 4588999988999999999964

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.06  E-value=7.9e-10  Score=99.51  Aligned_cols=37  Identities=32%  Similarity=0.623  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .++||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            4689999999999999999999999999999999765

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.04  E-value=5.1e-10  Score=100.82  Aligned_cols=118  Identities=16%  Similarity=0.180  Sum_probs=63.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      +.||+|||||++|+++|..|+++  |.+|+|||+.+.+.....               ++...+.               
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~---------------gl~~~~~---------------   52 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGC---------------GIPYYVS---------------   52 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccccc---------------ccchhhc---------------
Confidence            46999999999999999999998  999999999987521110               0000000               


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cCCc--EEEcCEEEEcCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIVIGCDGI  212 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~vV~A~G~  212 (300)
                      +....    .....+..   .......+.+.+. .+++++++++|++++.++.. +.+.. .+|+  .+.+|.||+|+|.
T Consensus        53 g~~~~----~~~~~~~~---~~~~~~~~~~~~~-~gi~~~~~~~V~~id~~~~~-v~~~~~~~g~~~~~~~d~lviAtG~  123 (472)
T 3iwa_A           53 GEVSN----IESLQATP---YNVVRDPEFFRIN-KDVEALVETRAHAIDRAAHT-VEIENLRTGERRTLKYDKLVLALGS  123 (472)
T ss_dssp             ------------------------------------CEEECSEEEEEEETTTTE-EEEEETTTCCEEEEECSEEEECCCE
T ss_pred             CCCCc----hHHhcccc---chhccCHHHHhhh-cCcEEEECCEEEEEECCCCE-EEEeecCCCCEEEEECCEEEEeCCC
Confidence            00000    00000000   0000111112111 27889999999999877665 32443 3355  7899999999997


Q ss_pred             Ch
Q 022277          213 RS  214 (300)
Q Consensus       213 ~s  214 (300)
                      ..
T Consensus       124 ~p  125 (472)
T 3iwa_A          124 KA  125 (472)
T ss_dssp             EE
T ss_pred             Cc
Confidence            43

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.04  E-value=5.2e-11  Score=103.08  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC------CcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG------IGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G------~~V~viE~~~~   92 (300)
                      .||+|||||++|+++|+.|+++|      .+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            48999999999999999999998      99999999863

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.04  E-value=1.9e-10  Score=95.41  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .+||+||||||+||++|+.|+++|++|+||||.+.++
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            5899999999999999999999999999999998774

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.03  E-value=2.5e-10  Score=100.98  Aligned_cols=106  Identities=17%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQR---LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~---~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      .||+|||||++|+++|..|++   .|++|+|+|+++.......                + ..                 
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~----------------~-~~-----------------   47 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA----------------L-PH-----------------   47 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS----------------S-CC-----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc----------------h-hh-----------------
Confidence            589999999999999999999   8999999999985411000                0 00                 


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCc----EEEcCEEEEcCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT----RIYANIVIGCDG  211 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~----~~~ad~vV~A~G  211 (300)
                            .. .......... .   .+.+.+.+.  +++++.+ +|+.++.++..   |.+.+++    ++.+|.||+|+|
T Consensus        48 ------~~-~~~~~~~~~~-~---~~~~~~~~~--gv~~~~~-~v~~i~~~~~~---V~~~~g~~~~~~~~~d~lViAtG  110 (409)
T 3h8l_A           48 ------VA-IGVRDVDELK-V---DLSEALPEK--GIQFQEG-TVEKIDAKSSM---VYYTKPDGSMAEEEYDYVIVGIG  110 (409)
T ss_dssp             ------CC-SSCCCCCCEE-E---EHHHHTGGG--TCEEEEC-EEEEEETTTTE---EEEECTTSCEEEEECSEEEECCC
T ss_pred             ------cc-cCCcCHHHHH-H---HHHHHHhhC--CeEEEEe-eEEEEeCCCCE---EEEccCCcccceeeCCEEEECCC
Confidence                  00 0000000010 1   122222222  7888877 89999876554   5565554    399999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      ....
T Consensus       111 ~~~~  114 (409)
T 3h8l_A          111 AHLA  114 (409)
T ss_dssp             CEEC
T ss_pred             CCcC
Confidence            8553

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.02  E-value=1.1e-10  Score=103.85  Aligned_cols=104  Identities=16%  Similarity=0.227  Sum_probs=67.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+|||||||++|+++|..|++.+  ++|+|||+++...       +.+...+.          .......+.+.      
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------~~p~l~~v----------~~g~~~~~~i~------   59 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------FTPAFPHL----------AMGWRKFEDIS------   59 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------CGGGHHHH----------HHTCSCGGGSE------
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------cCccHHHH----------hcCCCCHHHhh------
Confidence            47999999999999999999875  7899999987531       11111111          00000000000      


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                         .+...   .+ +. .+++++.+ +|++|+.++..   |.+++|+++.+|++|+|+|..
T Consensus        60 -------------------~~~~~---~~-~~-~gv~~i~~-~v~~Id~~~~~---V~~~~g~~i~YD~LViAtG~~  108 (430)
T 3hyw_A           60 -------------------VPLAP---LL-PK-FNIEFINE-KAESIDPDANT---VTTQSGKKIEYDYLVIATGPK  108 (430)
T ss_dssp             -------------------EESTT---TG-GG-GTEEEECS-CEEEEETTTTE---EEETTCCEEECSEEEECCCCE
T ss_pred             -------------------hcHHH---HH-HH-CCcEEEEe-EEEEEECCCCE---EEECCCCEEECCEEEEeCCCC
Confidence                               00000   01 11 16777655 79999877654   789999999999999999975

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.02  E-value=3.7e-10  Score=101.90  Aligned_cols=37  Identities=32%  Similarity=0.650  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            3589999999999999999999999999999997765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.02  E-value=1.3e-09  Score=100.77  Aligned_cols=114  Identities=18%  Similarity=0.277  Sum_probs=72.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      +...||+|||||++|+++|..|++.  |.+|+|+|+.+.+.....       .+.        ..+.....         
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~-------~lp--------~~~~g~~~---------   89 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANC-------GLP--------YYIGGVIT---------   89 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG-------GHH--------HHHTTSSC---------
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCC-------CCc--------hhhcCcCC---------
Confidence            3568999999999999999999998  899999999987531110       000        00000000         


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cCCc--EEEcCEEEEcC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIVIGCD  210 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~vV~A~  210 (300)
                                     ...... .   ...+.+.+.. +++++++++|+++..+++.+. +.. .+|+  .+.+|.||+|+
T Consensus        90 ---------------~~~~~~-~---~~~~~~~~~~-gi~v~~~~~V~~id~~~~~v~-v~~~~~g~~~~~~~d~lviAt  148 (588)
T 3ics_A           90 ---------------ERQKLL-V---QTVERMSKRF-NLDIRVLSEVVKINKEEKTIT-IKNVTTNETYNEAYDVLILSP  148 (588)
T ss_dssp             ---------------CGGGGB-S---SCHHHHHHHT-TCEEECSEEEEEEETTTTEEE-EEETTTCCEEEEECSEEEECC
T ss_pred             ---------------ChHHhh-c---cCHHHHHHhc-CcEEEECCEEEEEECCCCEEE-EeecCCCCEEEEeCCEEEECC
Confidence                           000000 0   0112222222 789999999999988766533 443 4565  78999999999


Q ss_pred             CCCh
Q 022277          211 GIRS  214 (300)
Q Consensus       211 G~~s  214 (300)
                      |...
T Consensus       149 G~~p  152 (588)
T 3ics_A          149 GAKP  152 (588)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.02  E-value=3.5e-09  Score=94.19  Aligned_cols=109  Identities=18%  Similarity=0.278  Sum_probs=79.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.....                 ..++                 
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~-----------------~~~~-----------------  193 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVT-----------------APPV-----------------  193 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS-----------------CHHH-----------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchh-----------------hHHH-----------------
Confidence            357899999999999999999999999999999876521100                 0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEE--cCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIET--SGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~--~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                           ...+.+.+.+.  |++++++++|++++.  +++++..|.+.+|+.+.+|.||.|+|..+
T Consensus       194 ---------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p  250 (431)
T 1q1r_A          194 ---------------------SAFYEHLHREA--GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIP  250 (431)
T ss_dssp             ---------------------HHHHHHHHHHH--TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEE
T ss_pred             ---------------------HHHHHHHHHhC--CeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCc
Confidence                                 01223333333  899999999999987  55565568899998999999999999754


Q ss_pred             --HhhhhcCC
Q 022277          215 --PIAKWIGF  222 (300)
Q Consensus       215 --~~r~~~g~  222 (300)
                        .+.+.+|+
T Consensus       251 ~~~l~~~~gl  260 (431)
T 1q1r_A          251 NCELASAAGL  260 (431)
T ss_dssp             CCHHHHHTTC
T ss_pred             CcchhhccCC
Confidence              34444443

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.01  E-value=2.2e-10  Score=103.43  Aligned_cols=37  Identities=24%  Similarity=0.489  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            3589999999999999999999999999999997765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.01  E-value=3.7e-09  Score=93.30  Aligned_cols=107  Identities=20%  Similarity=0.266  Sum_probs=69.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .||+|||||++|+++|..|+++|.  +|+|+|+.+.......     +          +...+...              
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-----~----------l~~~~l~~--------------   52 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP-----P----------LSKAYLKS--------------   52 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG-----G----------GGTGGGGS--------------
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc-----c----------CCHHHHCC--------------
Confidence            589999999999999999999999  8999999885421100     0          00000000              


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                ........ ..   ..+.+.+  .+++++. ++|+.++.+...   |.+.+|+.+.+|.||+|+|...
T Consensus        53 ----------~~~~~~~~-~~---~~~~~~~--~~i~~~~-~~v~~id~~~~~---v~~~~g~~~~~d~lvlAtG~~p  110 (404)
T 3fg2_P           53 ----------GGDPNSLM-FR---PEKFFQD--QAIELIS-DRMVSIDREGRK---LLLASGTAIEYGHLVLATGARN  110 (404)
T ss_dssp             ----------CCCTTSSB-SS---CHHHHHH--TTEEEEC-CCEEEEETTTTE---EEESSSCEEECSEEEECCCEEE
T ss_pred             ----------CCCHHHcc-CC---CHHHHHh--CCCEEEE-EEEEEEECCCCE---EEECCCCEEECCEEEEeeCCCc
Confidence                      00000000 01   1111222  2788888 999999876543   7788888999999999999643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.00  E-value=1.9e-09  Score=95.24  Aligned_cols=108  Identities=20%  Similarity=0.346  Sum_probs=79.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++|+.+.+.....                 ...                  
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~-----------------~~~------------------  186 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVL-----------------GRR------------------  186 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHH-----------------CHH------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhc-----------------CHH------------------
Confidence            457999999999999999999999999999999886521000                 000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-  215 (300)
                                          -...+.+.+.+.  |++++++++|++++.++ .+..|.+.+|+++.||.||.|+|..+. 
T Consensus       187 --------------------~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~-~~~~v~~~dg~~i~aD~Vv~a~G~~p~~  243 (410)
T 3ef6_A          187 --------------------IGAWLRGLLTEL--GVQVELGTGVVGFSGEG-QLEQVMASDGRSFVADSALICVGAEPAD  243 (410)
T ss_dssp             --------------------HHHHHHHHHHHH--TCEEECSCCEEEEECSS-SCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred             --------------------HHHHHHHHHHHC--CCEEEeCCEEEEEeccC-cEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence                                011233333333  89999999999998754 445689999999999999999998653 


Q ss_pred             -hhhhcCC
Q 022277          216 -IAKWIGF  222 (300)
Q Consensus       216 -~r~~~g~  222 (300)
                       +.+.+|+
T Consensus       244 ~l~~~~gl  251 (410)
T 3ef6_A          244 QLARQAGL  251 (410)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhCCC
Confidence             3444443

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.00  E-value=2.7e-09  Score=95.86  Aligned_cols=100  Identities=25%  Similarity=0.267  Sum_probs=77.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+...                  +..++                 
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~------------------~~~~~-----------------  209 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ------------------FDPLL-----------------  209 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------SCHHH-----------------
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc------------------cCHHH-----------------
Confidence            3568999999999999999999999999999998765211                  00000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCc-EEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT-RIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~-~~~ad~vV~A~G~~s~  215 (300)
                                           ...+.+.+.+.  |++++++++|++++.++++ ..|.+.+|+ ++.+|.||+|+|..+.
T Consensus       210 ---------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~-~~v~~~~G~~~i~~D~vv~a~G~~p~  265 (463)
T 2r9z_A          210 ---------------------SATLAENMHAQ--GIETHLEFAVAALERDAQG-TTLVAQDGTRLEGFDSVIWAVGRAPN  265 (463)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEESSCCEEEEEEETTE-EEEEETTCCEEEEESEEEECSCEEES
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEeCCEEEEEEEeCCe-EEEEEeCCcEEEEcCEEEECCCCCcC
Confidence                                 11233344333  8999999999999887666 558888998 8999999999998654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.00  E-value=2.5e-09  Score=96.07  Aligned_cols=100  Identities=19%  Similarity=0.319  Sum_probs=75.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                  
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~~------------------  212 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQG------------------DPET------------------  212 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS------------------CHHH------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccccc------------------CHHH------------------
Confidence            4799999999999999999999999999999988653210                  0000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc-C--Cc--EEEcCEEEEcCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV-N--GT--RIYANIVIGCDGI  212 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~-~--g~--~~~ad~vV~A~G~  212 (300)
                                          ...+.+.|.+.  |++++++++|++++.++++ +.|.+. +  |+  ++.+|.||+|+|.
T Consensus       213 --------------------~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~  269 (464)
T 2eq6_A          213 --------------------AALLRRALEKE--GIRVRTKTKAVGYEKKKDG-LHVRLEPAEGGEGEEVVVDKVLVAVGR  269 (464)
T ss_dssp             --------------------HHHHHHHHHHT--TCEEECSEEEEEEEEETTE-EEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred             --------------------HHHHHHHHHhc--CCEEEcCCEEEEEEEeCCE-EEEEEeecCCCceeEEEcCEEEECCCc
Confidence                                11233333333  8999999999999887665 446765 6  76  7999999999998


Q ss_pred             ChHh
Q 022277          213 RSPI  216 (300)
Q Consensus       213 ~s~~  216 (300)
                      .+..
T Consensus       270 ~p~~  273 (464)
T 2eq6_A          270 KPRT  273 (464)
T ss_dssp             EESC
T ss_pred             ccCC
Confidence            7643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.99  E-value=3.3e-09  Score=96.22  Aligned_cols=101  Identities=18%  Similarity=0.262  Sum_probs=77.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+.-                  ..++                  
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~------------------d~~~------------------  219 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF------------------DESV------------------  219 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTS------------------CHHH------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCccc------------------chhh------------------
Confidence            5789999999999999999999999999999988653110                  0000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcE-EEcCEEEEcCCCChHh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTR-IYANIVIGCDGIRSPI  216 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~-~~ad~vV~A~G~~s~~  216 (300)
                                          ...+.+.|.+.  |++++++++|++++.++++.+.|.+.+|+. +.+|.||.|+|.....
T Consensus       220 --------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          220 --------------------INVLENDMKKN--NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             --------------------HHHHHHHHHHT--TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             --------------------HHHHHHHHHhC--CCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence                                11333444443  899999999999987655435588888887 9999999999987644

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.99  E-value=1.2e-08  Score=92.50  Aligned_cols=62  Identities=24%  Similarity=0.333  Sum_probs=47.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCce-------ee--------EchhHHHHHHHcCCcHH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS-------LT--------LFKNGWSVLDALGVGSD  118 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~-------~~--------~~~~~~~~l~~~g~~~~  118 (300)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++.++.....       +.        ..+...++++++|+...
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCccc
Confidence            4589999999999999999999999999999999987431111       11        12456788888887643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.99  E-value=5.7e-10  Score=100.31  Aligned_cols=142  Identities=15%  Similarity=0.213  Sum_probs=74.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEc-hhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLF-KNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+||+|||||++|+++|..|++.|++|+|+|+. ..  +|...... ..+...+...++++.+.... ...++.  .  .
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~--gG~~~~~g~~psk~ll~~~~~~~~~~~~~-~~~g~~--~--~   74 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YW--GGVCLNVGCIPSKALLRNAELVHIFTKDA-KAFGIS--G--E   74 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CT--THHHHHHSHHHHHHHHHHHHHHHHHHHHT-TTTTEE--E--C
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CC--CCcccccCchhhHHHHHHHHHHHHHHHHH-HhcCCC--C--C
Confidence            479999999999999999999999999999998 33  22211100 01122222222222222110 001111  0  0


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~  212 (300)
                      .   .+++.... ......  ...+.+.+.+.+  .+++++.++.+.   .+++. +.|.+.+|  +++.+|.||+|+|.
T Consensus        75 ~---~~~~~~~~-~~~~~~--~~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~-v~V~~~~G~~~~~~~d~lViAtG~  144 (464)
T 2a8x_A           75 V---TFDYGIAY-DRSRKV--AEGRVAGVHFLMKKNKITEIHGYGTF---ADANT-LLVDLNDGGTESVTFDNAIIATGS  144 (464)
T ss_dssp             C---EECHHHHH-HHHHHH--HHHHHHHHHHHHHHTTCEEECEEEEE---SSSSE-EEEEETTSCCEEEEEEEEEECCCE
T ss_pred             C---ccCHHHHH-HHHHHH--HHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCe-EEEEeCCCceEEEEcCEEEECCCC
Confidence            0   00000000 000000  011222222222  388998877543   33344 55777777  68999999999998


Q ss_pred             ChHhh
Q 022277          213 RSPIA  217 (300)
Q Consensus       213 ~s~~r  217 (300)
                      .+...
T Consensus       145 ~~~~~  149 (464)
T 2a8x_A          145 STRLV  149 (464)
T ss_dssp             EECCC
T ss_pred             CCCCC
Confidence            77543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.98  E-value=7.5e-10  Score=99.91  Aligned_cols=114  Identities=15%  Similarity=0.220  Sum_probs=71.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      .+||+|||||++|+++|..|++.  |.+|+|+|+.+.......+       ...         ......           
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-------~~~---------~~~~~~-----------   88 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG-------LPY---------VISGAI-----------   88 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG-------HHH---------HHTTSS-----------
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC-------cch---------hhcCCc-----------
Confidence            46999999999999999999997  8999999998765211110       000         000000           


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cCCc--EEEcCEEEEcCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIVIGCDGI  212 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~vV~A~G~  212 (300)
                                  ........    ...+.+.+. .+++++++++|+.++.+++. +.+.. .+|+  ++.+|.||+|+|.
T Consensus        89 ------------~~~~~l~~----~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~-v~v~~~~~g~~~~~~~d~lviAtG~  150 (480)
T 3cgb_A           89 ------------ASTEKLIA----RNVKTFRDK-YGIDAKVRHEVTKVDTEKKI-VYAEHTKTKDVFEFSYDRLLIATGV  150 (480)
T ss_dssp             ------------SCGGGGBS----SCHHHHHHT-TCCEEESSEEEEEEETTTTE-EEEEETTTCCEEEEECSEEEECCCE
T ss_pred             ------------CCHHHhhh----cCHHHHHhh-cCCEEEeCCEEEEEECCCCE-EEEEEcCCCceEEEEcCEEEECCCC
Confidence                        00000000    011222222 27899999999999876665 33444 4465  7999999999997


Q ss_pred             ChHh
Q 022277          213 RSPI  216 (300)
Q Consensus       213 ~s~~  216 (300)
                      ....
T Consensus       151 ~p~~  154 (480)
T 3cgb_A          151 RPVM  154 (480)
T ss_dssp             EECC
T ss_pred             cccC
Confidence            6543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.98  E-value=2.1e-09  Score=99.05  Aligned_cols=111  Identities=14%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .||+|||||++|+++|+.|+++  |.+|+|+|+.+.+.....       .+.        ..+ ....            
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~-------~l~--------~~~-~~~~------------   53 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANC-------GLP--------YHI-SGEI------------   53 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG-------GHH--------HHH-TSSS------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccccc-------Cch--------HHh-cCCc------------
Confidence            5899999999999999999998  889999999987531110       000        000 0000            


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cCCc--EEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~vV~A~G~~  213 (300)
                                 ........-..    +.+.+.. +++++++++|++++.++.. +.+.. .+|+  ++.+|.||+|+|..
T Consensus        54 -----------~~~~~~~~~~~----~~~~~~~-~i~~~~~~~V~~id~~~~~-v~~~~~~~g~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           54 -----------AQRSALVLQTP----ESFKARF-NVEVRVKHEVVAIDRAAKL-VTVRRLLDGSEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             -----------CCGGGGBCCCH----HHHHHHH-CCEEETTEEEEEEETTTTE-EEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -----------CChHHhhccCH----HHHHHhc-CcEEEECCEEEEEECCCCE-EEEEecCCCCeEEEECCEEEECCCCC
Confidence                       00000000011    1122211 7899999999999877665 32443 2343  78999999999975


Q ss_pred             h
Q 022277          214 S  214 (300)
Q Consensus       214 s  214 (300)
                      .
T Consensus       117 p  117 (565)
T 3ntd_A          117 P  117 (565)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.97  E-value=3.3e-09  Score=92.34  Aligned_cols=106  Identities=15%  Similarity=0.149  Sum_probs=67.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..||+|||||++|+++|..|++.| +|+|+|+.+......      +.....+.  +.                      
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~------~~l~~~~~--g~----------------------   56 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSK------PMLSHYIA--GF----------------------   56 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCS------TTHHHHHT--TS----------------------
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCcccc------chhHHHHh--CC----------------------
Confidence            479999999999999999999999 999999987542100      00000000  00                      


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                          .+      ..... ...   .+.+.+.  +++++++++|+.++.+...   |. .+|+++.+|.||+|+|...
T Consensus        57 ----~~------~~~~~-~~~---~~~~~~~--~v~~~~g~~v~~id~~~~~---V~-~~g~~~~~d~lViATGs~p  113 (367)
T 1xhc_A           57 ----IP------RNRLF-PYS---LDWYRKR--GIEIRLAEEAKLIDRGRKV---VI-TEKGEVPYDTLVLATGARA  113 (367)
T ss_dssp             ----SC------GGGGC-SSC---HHHHHHH--TEEEECSCCEEEEETTTTE---EE-ESSCEEECSEEEECCCEEE
T ss_pred             ----CC------HHHhc-cCC---HHHHHhC--CcEEEECCEEEEEECCCCE---EE-ECCcEEECCEEEECCCCCC
Confidence                00      00000 000   1122222  7899999999998765432   55 6677899999999999644

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.97  E-value=1.7e-09  Score=97.28  Aligned_cols=36  Identities=33%  Similarity=0.487  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+||+|||||++|+++|..|++.|++|+|+||.+.+
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~   39 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGEL   39 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            589999999999999999999999999999988765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.97  E-value=3.6e-09  Score=95.71  Aligned_cols=101  Identities=20%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      ...+++|||||+.|+.+|..|++.   |.+|+++|+.+.+.+.-                  ..++              
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~------------------d~~~--------------  233 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGF------------------DSEL--------------  233 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTS------------------CHHH--------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccccc------------------CHHH--------------
Confidence            357999999999999999999999   99999999998652110                  0000              


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                              ...+.+.|.+.  |++++++++|++++.++++.+.|.+.+|+++.+|.||+|+|..
T Consensus       234 ------------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  287 (490)
T 1fec_A          234 ------------------------RKQLTEQLRAN--GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRV  287 (490)
T ss_dssp             ------------------------HHHHHHHHHHT--TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             ------------------------HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCC
Confidence                                    11233334333  8999999999999887654456888898889999999999987


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      +.
T Consensus       288 p~  289 (490)
T 1fec_A          288 PR  289 (490)
T ss_dssp             ES
T ss_pred             cC
Confidence            64

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.97  E-value=4.8e-09  Score=94.61  Aligned_cols=101  Identities=16%  Similarity=0.210  Sum_probs=76.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||..|+.+|..|++.|.+|+++|+.+.+.+.-                  ..++                 
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~------------------d~~~-----------------  228 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKF------------------DECI-----------------  228 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS------------------CHHH-----------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccccc------------------CHHH-----------------
Confidence            45789999999999999999999999999999988652110                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCc-eEEEEEcCC-cEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG-VTILELVNG-TRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g-~~~~ad~vV~A~G~~s  214 (300)
                                           ...+.+.|.+.  |++++++++|++++.++++ +..|.+.+| +.+.+|.||+|+|..+
T Consensus       229 ---------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p  285 (479)
T 2hqm_A          229 ---------------------QNTITDHYVKE--GINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKS  285 (479)
T ss_dssp             ---------------------HHHHHHHHHHH--TCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEE
T ss_pred             ---------------------HHHHHHHHHhC--CeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCC
Confidence                                 11333444444  8999999999999876554 355888888 7899999999999765


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       286 ~  286 (479)
T 2hqm_A          286 H  286 (479)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.97  E-value=5.3e-09  Score=94.70  Aligned_cols=101  Identities=14%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      ...+++|||||..|+.+|..|++.   |.+|+|+|+.+.+.+.-                  ..++              
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~------------------d~~~--------------  237 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGF------------------DETI--------------  237 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTS------------------CHHH--------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccccc------------------CHHH--------------
Confidence            357899999999999999999999   99999999988652110                  0000              


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                              ...+.+.|.+.  |++++++++|++++.++++.+.|.+.+|+++++|.||+|+|..
T Consensus       238 ------------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          238 ------------------------REEVTKQLTAN--GIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             ------------------------HHHHHHHHHHT--TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             ------------------------HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCc
Confidence                                    11333444333  8999999999999877654456888899889999999999986


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      ..
T Consensus       292 p~  293 (495)
T 2wpf_A          292 PR  293 (495)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.95  E-value=9.9e-10  Score=99.43  Aligned_cols=111  Identities=20%  Similarity=0.261  Sum_probs=74.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ..+||+|||||++|+++|+.|++. ++|+|+|+.+.++  |....                    ....     .     
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~G--G~~~~--------------------~~~~-----~-----  153 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLG--GDMWL--------------------KGIK-----Q-----  153 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSS--CSGGG--------------------TCSE-----E-----
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCC--Ceeec--------------------cccc-----c-----
Confidence            357999999999999999999999 9999999998762  21000                    0000     0     


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEcCCceEEEEEcCCc--EEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~ad~vV~A~G~~  213 (300)
                           +       +...   ...++...+.+.+ .+++++++++|.++..++..+.....++++  .+.+|.||+|+|..
T Consensus       154 -----~-------g~~~---~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~  218 (493)
T 1y56_A          154 -----E-------GFNK---DSRKVVEELVGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAI  218 (493)
T ss_dssp             -----T-------TTTE---EHHHHHHHHHHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEE
T ss_pred             -----C-------CCCC---CHHHHHHHHHHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCC
Confidence                 0       0000   2334555555443 478889999999998776653322334453  68999999999975


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      ..
T Consensus       219 ~~  220 (493)
T 1y56_A          219 DS  220 (493)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.95  E-value=8.6e-09  Score=92.27  Aligned_cols=101  Identities=20%  Similarity=0.295  Sum_probs=74.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++|+.+.+.+...                 ..+                  
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~-----------------~~~------------------  192 (452)
T 2cdu_A          148 KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYF-----------------DKE------------------  192 (452)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTS-----------------CHH------------------
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhh-----------------hhh------------------
Confidence            457899999999999999999999999999999886532100                 000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                          -...+.+.|.+.  |++++++++|++++.+++++..+.+ +|+++.+|.||+|+|....
T Consensus       193 --------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          193 --------------------FTDILAKDYEAH--GVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEEC
T ss_pred             --------------------HHHHHHHHHHHC--CCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCC
Confidence                                011233334333  8999999999999875555444554 6778999999999997653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.94  E-value=2.5e-09  Score=96.77  Aligned_cols=37  Identities=24%  Similarity=0.531  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      +.+||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   60 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTY   60 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            5699999999999999999999999999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.93  E-value=1.3e-09  Score=97.68  Aligned_cols=33  Identities=27%  Similarity=0.554  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ++||+|||||++|+++|..|++.|++|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            589999999999999999999999999999997

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.93  E-value=5e-09  Score=93.91  Aligned_cols=100  Identities=18%  Similarity=0.273  Sum_probs=74.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                 
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~~-----------------  213 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGF------------------EKQM-----------------  213 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS------------------CHHH-----------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccc------------------CHHH-----------------
Confidence            45799999999999999999999999999999988652110                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CCcEEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NGTRIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~~~~ad~vV~A~G~~  213 (300)
                                           ...+.+.|.+.  |++++++++|++++.++++ +.+.+.   +++++.+|.||.|+|..
T Consensus       214 ---------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~-~~v~~~~~g~~~~~~~D~vv~a~G~~  269 (455)
T 1ebd_A          214 ---------------------AAIIKKRLKKK--GVEVVTNALAKGAEEREDG-VTVTYEANGETKTIDADYVLVTVGRR  269 (455)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEEESEEEEEEEEETTE-EEEEEEETTEEEEEEESEEEECSCEE
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEeCCEEEEEEEeCCe-EEEEEEeCCceeEEEcCEEEECcCCC
Confidence                                 11233333333  8999999999999877665 335554   44679999999999986


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      +.
T Consensus       270 p~  271 (455)
T 1ebd_A          270 PN  271 (455)
T ss_dssp             ES
T ss_pred             cc
Confidence            54

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.93  E-value=1e-08  Score=90.61  Aligned_cols=104  Identities=23%  Similarity=0.367  Sum_probs=76.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++|+.+.+.+...                 ..++                 
T Consensus       144 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~-----------------~~~~-----------------  189 (408)
T 2gqw_A          144 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAA-----------------PATL-----------------  189 (408)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTS-----------------CHHH-----------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccccc-----------------CHHH-----------------
Confidence            357999999999999999999999999999999886522100                 0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-  215 (300)
                                           ...+.+.+.+.  |++++++++|++++ + +   .|.+.+|+++.+|.||.|+|.... 
T Consensus       190 ---------------------~~~l~~~l~~~--GV~i~~~~~v~~i~-~-~---~v~~~~g~~i~~D~vi~a~G~~p~~  241 (408)
T 2gqw_A          190 ---------------------ADFVARYHAAQ--GVDLRFERSVTGSV-D-G---VVLLDDGTRIAADMVVVGIGVLAND  241 (408)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEEESCCEEEEE-T-T---EEEETTSCEEECSEEEECSCEEECC
T ss_pred             ---------------------HHHHHHHHHHc--CcEEEeCCEEEEEE-C-C---EEEECCCCEEEcCEEEECcCCCccH
Confidence                                 11233333333  89999999999998 3 3   377889989999999999997643 


Q ss_pred             -hhhhcCC
Q 022277          216 -IAKWIGF  222 (300)
Q Consensus       216 -~r~~~g~  222 (300)
                       +.+.+|+
T Consensus       242 ~l~~~~gl  249 (408)
T 2gqw_A          242 ALARAAGL  249 (408)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHhCCC
Confidence             4344443

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.93  E-value=1.8e-08  Score=90.25  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=75.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||..|+.+|..|++.|.+|+++++.+.+.+...                 ..+                  
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~-----------------d~~------------------  190 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYF-----------------DKE------------------  190 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTC-----------------CHH------------------
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccC-----------------CHH------------------
Confidence            457899999999999999999999999999999886532100                 000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                          -...+.+.|.+.  |++++++++|++++..++++ .|.+++| ++.+|.||+|+|....
T Consensus       191 --------------------~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~v-~v~~~~g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          191 --------------------MVAEVQKSLEKQ--AVIFHFEETVLGIEETANGI-VLETSEQ-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             --------------------HHHHHHHHHHTT--TEEEEETCCEEEEEECSSCE-EEEESSC-EEEESEEEECSCCBCC
T ss_pred             --------------------HHHHHHHHHHHc--CCEEEeCCEEEEEEccCCeE-EEEECCC-EEEeCEEEECcCCCCC
Confidence                                011233333333  89999999999998777765 5888777 8999999999998653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.92  E-value=2.8e-09  Score=96.04  Aligned_cols=37  Identities=27%  Similarity=0.614  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4689999999999999999999999999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.92  E-value=3.3e-09  Score=95.41  Aligned_cols=36  Identities=25%  Similarity=0.579  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ++||+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            479999999999999999999999999999998765

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.92  E-value=1.9e-09  Score=96.50  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=69.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHc-CCcHHHHhccccccceEEEcCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDAL-GVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+.....+.       ...  ..+ +....                 
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~--~~~~g~~~~-----------------   54 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC-------GIA--LYLGKEIKN-----------------   54 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG-------GHH--HHHTTCBGG-----------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc-------cch--hhhcCCccc-----------------
Confidence            4899999999999999999998  999999999886422111       000  000 00000                 


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cC--CcEEEcCEEEEcCCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VN--GTRIYANIVIGCDGI  212 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~--g~~~~ad~vV~A~G~  212 (300)
                            ..      .......    +.+.+.+  .+++++++++|+.++.+++. +.+.. .+  +..+.+|.||+|+|.
T Consensus        55 ------~~------~~~~~~~----~~~~~~~--~gv~~~~~~~v~~i~~~~~~-v~v~~~~~g~~~~~~~d~lviAtGs  115 (452)
T 2cdu_A           55 ------ND------PRGLFYS----SPEELSN--LGANVQMRHQVTNVDPETKT-IKVKDLITNEEKTEAYDKLIMTTGS  115 (452)
T ss_dssp             ------GC------GGGGBSC----CHHHHHH--TTCEEEESEEEEEEEGGGTE-EEEEETTTCCEEEEECSEEEECCCE
T ss_pred             ------CC------HHHhhhc----CHHHHHH--cCCEEEeCCEEEEEEcCCCE-EEEEecCCCceEEEECCEEEEccCC
Confidence                  00      0000000    1112222  28899999999999876655 32433 12  357999999999997


Q ss_pred             ChH
Q 022277          213 RSP  215 (300)
Q Consensus       213 ~s~  215 (300)
                      ...
T Consensus       116 ~p~  118 (452)
T 2cdu_A          116 KPT  118 (452)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            554

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.92  E-value=5.9e-09  Score=93.22  Aligned_cols=100  Identities=17%  Similarity=0.251  Sum_probs=72.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||++|+.+|..|++.|.+|+|+|+.+.+.....                 ..+                  
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~-----------------~~~------------------  192 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYL-----------------DKE------------------  192 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTC-----------------CHH------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccC-----------------CHH------------------
Confidence            468999999999999999999999999999999886521100                 000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                          -...+.+.+.+  .|++++++++|++++.+ ++++.+.+ +++++.+|.||+|+|..+.
T Consensus       193 --------------------~~~~l~~~l~~--~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          193 --------------------FTDVLTEEMEA--NNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             --------------------HHHHHHHHHHT--TTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             --------------------HHHHHHHHHHh--CCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence                                01123333333  38999999999999865 44434555 4568999999999997653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.91  E-value=9.3e-09  Score=90.53  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=68.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+|+|||||++|+++|..|++.|  .+|+|||+++.....       +..          ..+........         
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p~~----------~~v~~g~~~~~---------   56 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC-------YMS----------NEVIGGDRELA---------   56 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS-------TTH----------HHHHHTSSCGG---------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc-------cCH----------HHHhcCCCCHH---------
Confidence            58999999999999999999876  589999998753111       110          11111000000         


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                     . .......+    .+  .|+++.. .+|++|+.+...   |.+.+|.++.+|.+|+|+|....
T Consensus        57 ---------------~-~~~~~~~~----~~--~gv~~i~-~~v~~id~~~~~---v~~~~g~~i~yd~LviAtG~~~~  109 (401)
T 3vrd_B           57 ---------------S-LRVGYDGL----RA--HGIQVVH-DSALGIDPDKKL---VKTAGGAEFAYDRCVVAPGIDLL  109 (401)
T ss_dssp             ---------------G-GEECSHHH----HH--TTCEEEC-SCEEEEETTTTE---EEETTSCEEECSEEEECCCEEEC
T ss_pred             ---------------H-HhhCHHHH----HH--CCCEEEE-eEEEEEEccCcE---EEecccceeecceeeeccCCccc
Confidence                           0 00111122    22  2778765 478888876654   78899999999999999997543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.90  E-value=1.1e-08  Score=92.82  Aligned_cols=101  Identities=17%  Similarity=0.293  Sum_probs=77.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||+.|+.+|..|++.|.+|+++|+.+.+.+.-     .             .+                  
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----d-------------~~------------------  224 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYE-----D-------------AD------------------  224 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCS-----S-------------HH------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccccc-----C-------------HH------------------
Confidence            35789999999999999999999999999999988653210     0             00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChHh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~~  216 (300)
                                          -...+.+.+.+.  |++++++++|++++.++++ +.|.+.+|+++.+|.||+|+|..+..
T Consensus       225 --------------------~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          225 --------------------AALVLEESFAER--GVRLFKNARAASVTRTGAG-VLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEETTCCEEEEEECSSS-EEEEETTSCEEEESEEEECCCEEECC
T ss_pred             --------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEeCCE-EEEEECCCcEEEcCEEEECCCCCcCC
Confidence                                011233333333  8999999999999887666 44778888889999999999987643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.90  E-value=1.3e-08  Score=92.75  Aligned_cols=100  Identities=17%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+.+++|||||++|+++|..+++.|.+|+|+++...+. .                  ..+++                
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~-~------------------~D~ei----------------  265 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR-G------------------FDQQC----------------  265 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST-T------------------SCHHH----------------
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc-c------------------cchhH----------------
Confidence            356899999999999999999999999999999754321 0                  00111                


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                            ...+.+.|.+.  |+++++++.++.++..++.+. |.+.++..+.+|.|++|+|+...
T Consensus       266 ----------------------~~~l~~~l~~~--gi~~~~~~~v~~~~~~~~~~~-v~~~~~~~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          266 ----------------------AVKVKLYMEEQ--GVMFKNGILPKKLTKMDDKIL-VEFSDKTSELYDTVLYAIGRKGD  320 (542)
T ss_dssp             ----------------------HHHHHHHHHHT--TCEEEETCCEEEEEEETTEEE-EEETTSCEEEESEEEECSCEEES
T ss_pred             ----------------------HHHHHHHHHhh--cceeecceEEEEEEecCCeEE-EEEcCCCeEEEEEEEEcccccCC
Confidence                                  11334444444  899999999999998887744 88888888999999999998654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.90  E-value=7.4e-09  Score=93.39  Aligned_cols=101  Identities=19%  Similarity=0.249  Sum_probs=74.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-.                  .+                  
T Consensus       182 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~------------------~~------------------  225 (478)
T 1v59_A          182 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMD------------------GE------------------  225 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSC------------------HH------------------
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccC------------------HH------------------
Confidence            357999999999999999999999999999999986632100                  00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEE--cCCceEEEEEc-----CCcEEEcCEEEEc
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIET--SGNGVTILELV-----NGTRIYANIVIGC  209 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~--~~~~~~~v~~~-----~g~~~~ad~vV~A  209 (300)
                                          -...+.+.|.+.  |++++++++|++++.  +++. +.|.+.     +++.+.+|.||+|
T Consensus       226 --------------------~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~~~-~~v~~~~~~~g~~~~~~~D~vv~a  282 (478)
T 1v59_A          226 --------------------VAKATQKFLKKQ--GLDFKLSTKVISAKRNDDKNV-VEIVVEDTKTNKQENLEAEVLLVA  282 (478)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEECSEEEEEEEEETTTTE-EEEEEEETTTTEEEEEEESEEEEC
T ss_pred             --------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEecCCCe-EEEEEEEcCCCCceEEECCEEEEC
Confidence                                011233333333  899999999999987  4443 446665     3467999999999


Q ss_pred             CCCChHh
Q 022277          210 DGIRSPI  216 (300)
Q Consensus       210 ~G~~s~~  216 (300)
                      +|..+..
T Consensus       283 ~G~~p~~  289 (478)
T 1v59_A          283 VGRRPYI  289 (478)
T ss_dssp             SCEEECC
T ss_pred             CCCCcCC
Confidence            9986543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.90  E-value=1.5e-08  Score=90.33  Aligned_cols=115  Identities=19%  Similarity=0.290  Sum_probs=82.8

Q ss_pred             cceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHH
Q 022277           33 CFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDA  112 (300)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~  112 (300)
                      .+..++..+...++.....    ....+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.+...              
T Consensus       126 ~~~~~~~~~~~~l~~~~~~----~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d--------------  187 (437)
T 4eqs_A          126 TFTLRNLEDTDAIDQFIKA----NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMD--------------  187 (437)
T ss_dssp             EECCSSHHHHHHHHHHHHH----HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSC--------------
T ss_pred             EEeeccHHHHHHHHHhhhc----cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccccc--------------
Confidence            3445556666555544331    1357899999999999999999999999999999886632110              


Q ss_pred             cCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEE
Q 022277          113 LGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTI  192 (300)
Q Consensus       113 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~  192 (300)
                          .                                      -....+.+.|.+.  |++++++++|++++.  +.   
T Consensus       188 ----~--------------------------------------~~~~~~~~~l~~~--gV~i~~~~~v~~~~~--~~---  218 (437)
T 4eqs_A          188 ----A--------------------------------------DMNQPILDELDKR--EIPYRLNEEINAING--NE---  218 (437)
T ss_dssp             ----G--------------------------------------GGGHHHHHHHHHT--TCCEEESCCEEEEET--TE---
T ss_pred             ----c--------------------------------------hhHHHHHHHhhcc--ceEEEeccEEEEecC--Ce---
Confidence                0                                      0112344445444  899999999998753  33   


Q ss_pred             EEEcCCcEEEcCEEEEcCCCCh
Q 022277          193 LELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       193 v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      +.+++|+++++|.||.|.|...
T Consensus       219 v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          219 ITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             EEETTSCEEECSEEEECCCEEE
T ss_pred             eeecCCeEEeeeeEEEEeceec
Confidence            7789999999999999999754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.89  E-value=1.2e-08  Score=91.63  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999999999999999999999998

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.89  E-value=9.5e-09  Score=93.68  Aligned_cols=99  Identities=20%  Similarity=0.318  Sum_probs=75.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      .+++|||||..|+.+|..|++.|.+|+++|+.+.+.+.-                  ..++                   
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~------------------~~~~-------------------  257 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIK------------------DNET-------------------  257 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCC------------------SHHH-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccc------------------cHHH-------------------
Confidence            799999999999999999999999999999988652110                  0000                   


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCc-e--EEEEEcCCc-EEEcCEEEEcCCCCh
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG-V--TILELVNGT-RIYANIVIGCDGIRS  214 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~-~--~~v~~~~g~-~~~ad~vV~A~G~~s  214 (300)
                                         ...+.+.|.+.  |++++++++|++++.++++ +  +.|.+++|+ ++.+|.||+|+|..+
T Consensus       258 -------------------~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p  316 (523)
T 1mo9_A          258 -------------------RAYVLDRMKEQ--GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQP  316 (523)
T ss_dssp             -------------------HHHHHHHHHHT--TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEE
T ss_pred             -------------------HHHHHHHHHhC--CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCcc
Confidence                               11233334333  8999999999999876554 2  457888887 899999999999876


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       317 ~  317 (523)
T 1mo9_A          317 R  317 (523)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.89  E-value=1.5e-08  Score=91.62  Aligned_cols=99  Identities=20%  Similarity=0.336  Sum_probs=72.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+|+|+.+.+.+..                 +..++                 
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~~-----------------  238 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGY-----------------YDRDL-----------------  238 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------SCHHH-----------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhH-----------------HHHHH-----------------
Confidence            46789999999999999999999999999999988652210                 00000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                           ...+.+.|.+.  |++++++++|++++. ++++..|.+ +|+++.+|.||+|+|...
T Consensus       239 ---------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          239 ---------------------TDLMAKNMEEH--GIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             ---------------------HHHHHHHHHTT--TCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEEE
T ss_pred             ---------------------HHHHHHHHHhC--CeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCCc
Confidence                                 11233333333  899999999999986 344333555 667899999999999764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.89  E-value=7.5e-09  Score=93.44  Aligned_cols=100  Identities=19%  Similarity=0.296  Sum_probs=75.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||..|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                 
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~------------------~~~~-----------------  228 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA------------------DRDL-----------------  228 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS------------------CHHH-----------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccc------------------CHHH-----------------
Confidence            35799999999999999999999999999999988653210                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC----CcEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN----GTRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~----g~~~~ad~vV~A~G~  212 (300)
                                           ...+.+.|.+.  |++++++++|++++.++++ ..|.+.+    |+++.+|.||+|+|.
T Consensus       229 ---------------------~~~l~~~l~~~--gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~~D~vv~a~G~  284 (482)
T 1ojt_A          229 ---------------------VKVWQKQNEYR--FDNIMVNTKTVAVEPKEDG-VYVTFEGANAPKEPQRYDAVLVAAGR  284 (482)
T ss_dssp             ---------------------HHHHHHHHGGG--EEEEECSCEEEEEEEETTE-EEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             ---------------------HHHHHHHHHhc--CCEEEECCEEEEEEEcCCe-EEEEEeccCCCceEEEcCEEEECcCC
Confidence                                 11233344333  8999999999999877655 4477776    677999999999998


Q ss_pred             ChH
Q 022277          213 RSP  215 (300)
Q Consensus       213 ~s~  215 (300)
                      ...
T Consensus       285 ~p~  287 (482)
T 1ojt_A          285 APN  287 (482)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.89  E-value=8.2e-09  Score=94.00  Aligned_cols=36  Identities=28%  Similarity=0.476  Sum_probs=33.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +..+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            356899999999999999999999999999999965

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.88  E-value=2.3e-09  Score=97.07  Aligned_cols=132  Identities=18%  Similarity=0.223  Sum_probs=74.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+|||||++|+++|..|++.  |.+|+|||+.+.......     +-+..++.  +.....      .....+...
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~-----~lsk~l~~--~~~~~~------~~~~~~~~~   76 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-----PLSKELWF--SDDPNV------TKTLRFKQW   76 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-----GGGTGGGC--C--CTH------HHHCEEECT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC-----CCCHHhhc--CCccch------hhccccccc
Confidence            568999999999999999999887  889999999876521110     00000000  000000      000111111


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhc-CCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQ-LPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~-~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                      .+.. ..+.+...    ..+ .....+    .+. -.+++++++++|++++.++..   |.+.+|+++.+|.||+|+|..
T Consensus        77 ~~~~-~~~~~~~~----~~~-~~~~~l----~~~~~~gv~~~~g~~v~~id~~~~~---V~~~~g~~i~yd~lviATGs~  143 (493)
T 1m6i_A           77 NGKE-RSIYFQPP----SFY-VSAQDL----PHIENGGVAVLTGKKVVQLDVRDNM---VKLNDGSQITYEKCLIATGGT  143 (493)
T ss_dssp             TSCE-EESBSSCG----GGS-BCTTTT----TTSTTCEEEEEETCCEEEEEGGGTE---EEETTSCEEEEEEEEECCCEE
T ss_pred             cccc-ccccccch----Hhh-cchhhh----hhhhcCCeEEEcCCEEEEEECCCCE---EEECCCCEEECCEEEECCCCC
Confidence            1110 00111100    000 111111    111 137889999999999876543   778888899999999999975


Q ss_pred             h
Q 022277          214 S  214 (300)
Q Consensus       214 s  214 (300)
                      .
T Consensus       144 p  144 (493)
T 1m6i_A          144 P  144 (493)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.88  E-value=1.2e-09  Score=97.96  Aligned_cols=35  Identities=31%  Similarity=0.599  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      +||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~   36 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL   36 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            79999999999999999999999999999998765

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.88  E-value=6.7e-09  Score=92.83  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=69.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+..+..+.       ....+. .+.       ...           
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~~~~-~~~-------~~~-----------   54 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA-------GMQLYL-EGK-------VKD-----------   54 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGG-------GHHHHH-TTS-------SCC-----------
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccc-------cchhhh-cCc-------cCC-----------
Confidence            4899999999999999999998  999999999886531111       000000 000       000           


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-cCCc--EEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-VNGT--RIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-~~g~--~~~ad~vV~A~G~~  213 (300)
                                   ......    .+.+.+.+.  +++++.+++|+.+..+++. +.+.. .+|+  ++.+|.||+|+|..
T Consensus        55 -------------~~~~~~----~~~~~~~~~--gv~~~~~~~v~~i~~~~~~-v~~~~~~~g~~~~~~~d~lviAtG~~  114 (447)
T 1nhp_A           55 -------------VNSVRY----MTGEKMESR--GVNVFSNTEITAIQPKEHQ-VTVKDLVSGEERVENYDKLIISPGAV  114 (447)
T ss_dssp             -------------GGGSBS----CCHHHHHHT--TCEEEETEEEEEEETTTTE-EEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -------------HHHhhc----CCHHHHHHC--CCEEEECCEEEEEeCCCCE-EEEEecCCCceEEEeCCEEEEcCCCC
Confidence                         000000    011222222  8899999999999876655 32443 3464  48999999999975


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      ..
T Consensus       115 p~  116 (447)
T 1nhp_A          115 PF  116 (447)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.87  E-value=1.9e-08  Score=90.33  Aligned_cols=100  Identities=16%  Similarity=0.302  Sum_probs=74.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                 
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~~-----------------  214 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNE------------------DADV-----------------  214 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS------------------CHHH-----------------
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccccc------------------CHHH-----------------
Confidence            35799999999999999999999999999999998653210                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc-CC--cEEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV-NG--TRIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~-~g--~~~~ad~vV~A~G~~  213 (300)
                                           ...+.+.|.+.  |++++++++|++++.++++ +.+.+. +|  +++.+|.||.|+|..
T Consensus       215 ---------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~-~~v~~~~~g~~~~~~~D~vv~a~G~~  270 (464)
T 2a8x_A          215 ---------------------SKEIEKQFKKL--GVTILTATKVESIADGGSQ-VTVTVTKDGVAQELKAEKVLQAIGFA  270 (464)
T ss_dssp             ---------------------HHHHHHHHHHH--TCEEECSCEEEEEEECSSC-EEEEEESSSCEEEEEESEEEECSCEE
T ss_pred             ---------------------HHHHHHHHHHc--CCEEEeCcEEEEEEEcCCe-EEEEEEcCCceEEEEcCEEEECCCCC
Confidence                                 11233344333  8999999999999877655 336664 56  579999999999976


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      ..
T Consensus       271 p~  272 (464)
T 2a8x_A          271 PN  272 (464)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.87  E-value=1.5e-08  Score=91.48  Aligned_cols=100  Identities=23%  Similarity=0.356  Sum_probs=77.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||..|+.+|..|++.|.+|+++++.+.+...-                  ...                  
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~------------------~~~------------------  233 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNF------------------DYD------------------  233 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS------------------CHH------------------
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccccc------------------CHH------------------
Confidence            35799999999999999999999999999999988652110                  000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                          -...+.+.+.+.  |++++++++|++++.+++++ .|.+.+|+++.+|.||+|+|..+.
T Consensus       234 --------------------~~~~l~~~l~~~--Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          234 --------------------LRQLLNDAMVAK--GISIIYEATVSQVQSTENCY-NVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             --------------------HHHHHHHHHHHH--TCEEESSCCEEEEEECSSSE-EEEETTSCEEEESEEEECCCEEEC
T ss_pred             --------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEeeCCEE-EEEECCCcEEEcCEEEEeeCCCcC
Confidence                                011233444443  89999999999999877764 588999988999999999998654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.87  E-value=1.6e-08  Score=91.03  Aligned_cols=109  Identities=28%  Similarity=0.409  Sum_probs=79.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ...+++|||||..|+.+|..|++. |.+|+++|+.+.+.+...                 ...                 
T Consensus       158 ~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~-----------------~~~-----------------  203 (472)
T 3iwa_A          158 EVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFT-----------------SKS-----------------  203 (472)
T ss_dssp             SCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTS-----------------CHH-----------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccccc-----------------CHH-----------------
Confidence            357999999999999999999999 999999999886532100                 000                 


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                           -...+.+.+.+.  |++++++++|++++.+++.+. |.+.+|+++.+|.||+|+|..+.
T Consensus       204 ---------------------~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          204 ---------------------LSQMLRHDLEKN--DVVVHTGEKVVRLEGENGKVA-RVITDKRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEECSCCEEEEEESSSBEE-EEEESSCEEECSEEEECSCEEEC
T ss_pred             ---------------------HHHHHHHHHHhc--CCEEEeCCEEEEEEccCCeEE-EEEeCCCEEEcCEEEECCCCCcC
Confidence                                 011233333333  899999999999988666644 78888989999999999998643


Q ss_pred             --hhhhcCCC
Q 022277          216 --IAKWIGFS  223 (300)
Q Consensus       216 --~r~~~g~~  223 (300)
                        +.+.+|+.
T Consensus       260 ~~l~~~~gl~  269 (472)
T 3iwa_A          260 TQLARDAGLE  269 (472)
T ss_dssp             CHHHHHHTCC
T ss_pred             HHHHHhCCcc
Confidence              44444543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.86  E-value=1.7e-08  Score=90.85  Aligned_cols=102  Identities=19%  Similarity=0.330  Sum_probs=74.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.+..                 +..++                 
T Consensus       177 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~~~~-----------------  222 (474)
T 1zmd_A          177 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVG-----------------IDMEI-----------------  222 (474)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSS-----------------CCHHH-----------------
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcc-----------------cCHHH-----------------
Confidence            35789999999999999999999999999999988653210                 00000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE-----cCCcEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL-----VNGTRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~-----~~g~~~~ad~vV~A~G  211 (300)
                                           ...+.+.|.+.  |++++++++|++++.++++.+.+.+     .+++++.+|.||+|+|
T Consensus       223 ---------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G  279 (474)
T 1zmd_A          223 ---------------------SKNFQRILQKQ--GFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIG  279 (474)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSC
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcC
Confidence                                 11233333333  8999999999999887655233553     4556899999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      ..+.
T Consensus       280 ~~p~  283 (474)
T 1zmd_A          280 RRPF  283 (474)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            8654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.86  E-value=1.1e-08  Score=91.16  Aligned_cols=111  Identities=17%  Similarity=0.194  Sum_probs=67.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ++|+|||||++|+++|..|++.|  .+|+|+|+.+........  +              ..+......           
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~--l--------------~~~~~~~~~-----------   53 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA--L--------------PYVIGEVVE-----------   53 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGG--H--------------HHHHTTSSC-----------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcch--h--------------HHHHcCCcc-----------
Confidence            47999999999999999999988  479999998754211110  0              000000000           


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---CcEEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---GTRIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g~~~~ad~vV~A~G~~  213 (300)
                                  ............+.+.   .  +++++.+++|+.+..+...+. +....   +..+.+|.||+|+|..
T Consensus        54 ------------~~~~~~~~~~~~~~~~---~--~i~~~~~~~V~~id~~~~~~~-~~~~~~~~~~~~~yd~lVIATGs~  115 (437)
T 4eqs_A           54 ------------DRRYALAYTPEKFYDR---K--QITVKTYHEVIAINDERQTVS-VLNRKTNEQFEESYDKLILSPGAS  115 (437)
T ss_dssp             ------------CGGGTBCCCHHHHHHH---H--CCEEEETEEEEEEETTTTEEE-EEETTTTEEEEEECSEEEECCCEE
T ss_pred             ------------chhhhhhcCHHHHHHh---c--CCEEEeCCeEEEEEccCcEEE-EEeccCCceEEEEcCEEEECCCCc
Confidence                        0000011112222222   1  789999999999987665532 33322   2368899999999975


Q ss_pred             h
Q 022277          214 S  214 (300)
Q Consensus       214 s  214 (300)
                      .
T Consensus       116 p  116 (437)
T 4eqs_A          116 A  116 (437)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.86  E-value=1.2e-08  Score=89.42  Aligned_cols=110  Identities=16%  Similarity=0.218  Sum_probs=67.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ..+||+|||||++|+++|..|++.|  .+|+|+|++........                    .......         
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~--------------------~l~~~~~---------   53 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKP--------------------MLSTGFS---------   53 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGG--------------------GGGGTTT---------
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcc--------------------cccHHHh---------
Confidence            3589999999999999999999999  46899998762110000                    0000000         


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                 ............    .+.+.+.. +++++.+++|+.+..++..   |.+.+ ..+.+|.||+|+|...
T Consensus        54 -----------~~~~~~~~~~~~----~~~~~~~~-~v~~~~~~~v~~i~~~~~~---v~~~~-~~~~~d~lviAtG~~p  113 (384)
T 2v3a_A           54 -----------KNKDADGLAMAE----PGAMAEQL-NARILTHTRVTGIDPGHQR---IWIGE-EEVRYRDLVLAWGAEP  113 (384)
T ss_dssp             -----------TTCCHHHHEEEC----HHHHHHHT-TCEEECSCCCCEEEGGGTE---EEETT-EEEECSEEEECCCEEE
T ss_pred             -----------CCCCHHHhhccC----HHHHHHhC-CcEEEeCCEEEEEECCCCE---EEECC-cEEECCEEEEeCCCCc
Confidence                       000000000000    11222222 7899999999999765543   55554 4799999999999755


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       114 ~  114 (384)
T 2v3a_A          114 I  114 (384)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.85  E-value=1.7e-08  Score=90.72  Aligned_cols=100  Identities=23%  Similarity=0.306  Sum_probs=74.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||..|+.+|..|++.|.+|+++|+.+.+.+.-                  ..+                  
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------------------d~~------------------  216 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTL------------------DED------------------  216 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS------------------CHH------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccC------------------CHH------------------
Confidence            45799999999999999999999999999999998653210                  000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHH-HhcCCCCeEEeCCeEEEEEEcCCceEEEEEc--CC--cEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETL-ANQLPPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l-~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~vV~A~G  211 (300)
                                          -...+.+.| .+.  |++++++++|++++.++++ +.+.+.  +|  +++.+|.||+|+|
T Consensus       217 --------------------~~~~l~~~l~~~~--gv~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vv~a~G  273 (468)
T 2qae_A          217 --------------------VTNALVGALAKNE--KMKFMTSTKVVGGTNNGDS-VSLEVEGKNGKRETVTCEALLVSVG  273 (468)
T ss_dssp             --------------------HHHHHHHHHHHHT--CCEEECSCEEEEEEECSSS-EEEEEECC---EEEEEESEEEECSC
T ss_pred             --------------------HHHHHHHHHhhcC--CcEEEeCCEEEEEEEcCCe-EEEEEEcCCCceEEEECCEEEECCC
Confidence                                011334444 333  8999999999999887665 346665  66  5799999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      ..+.
T Consensus       274 ~~p~  277 (468)
T 2qae_A          274 RRPF  277 (468)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            8754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.85  E-value=1.6e-08  Score=90.82  Aligned_cols=100  Identities=19%  Similarity=0.281  Sum_probs=76.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||+.|+.+|..|++.|.+|+++++.+.+.+..                  ..++                 
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~------------------~~~~-----------------  213 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRF------------------DQDM-----------------  213 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS------------------CHHH-----------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccccc------------------CHHH-----------------
Confidence            45789999999999999999999999999999988652110                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEE-EcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILE-LVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~-~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                           ...+.+.|.+.  |++++++++|++++.++++.+.|. +++|+ +.+|.||+|+|..+.
T Consensus       214 ---------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          214 ---------------------RRGLHAAMEEK--GIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             ---------------------HHHHHHHHHHC--CCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence                                 11333334333  899999999999998766655688 88887 999999999998653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.84  E-value=3.2e-08  Score=89.56  Aligned_cols=107  Identities=18%  Similarity=0.255  Sum_probs=76.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH----cCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQR----LGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~----~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      ..+|+|||||+.|+.+|..|++    .|.+|+++++.+.+....                 +...               
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~-----------------l~~~---------------  227 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-----------------LPEY---------------  227 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-----------------SCHH---------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc-----------------CCHH---------------
Confidence            5789999999999999999987    488999999876431100                 0000               


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                             ....+.+.+.+.  |++++++++|++++.+++. +.|.+.+|+++.||.||+|+|..
T Consensus       228 -----------------------~~~~~~~~l~~~--GV~v~~~~~V~~i~~~~~~-~~v~l~dG~~i~aD~Vv~a~G~~  281 (493)
T 1m6i_A          228 -----------------------LSNWTMEKVRRE--GVKVMPNAIVQSVGVSSGK-LLIKLKDGRKVETDHIVAAVGLE  281 (493)
T ss_dssp             -----------------------HHHHHHHHHHTT--TCEEECSCCEEEEEEETTE-EEEEETTSCEEEESEEEECCCEE
T ss_pred             -----------------------HHHHHHHHHHhc--CCEEEeCCEEEEEEecCCe-EEEEECCCCEEECCEEEECCCCC
Confidence                                   011223333333  8999999999999876555 45888999899999999999986


Q ss_pred             hH--hhhhcCC
Q 022277          214 SP--IAKWIGF  222 (300)
Q Consensus       214 s~--~r~~~g~  222 (300)
                      ..  +.+..|+
T Consensus       282 pn~~l~~~~gl  292 (493)
T 1m6i_A          282 PNVELAKTGGL  292 (493)
T ss_dssp             ECCTTHHHHTC
T ss_pred             ccHHHHHHcCC
Confidence            53  3444444

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.84  E-value=1.1e-08  Score=89.10  Aligned_cols=99  Identities=23%  Similarity=0.335  Sum_probs=73.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      .+++|||||++|+.+|..|++.|.+|+++|+.+.+.+      +.+             ++                   
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~~-------------~~-------------------  185 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LDE-------------EL-------------------  185 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CCH-------------HH-------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc------CCH-------------HH-------------------
Confidence            6899999999999999999999999999999886521      000             00                   


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH--h
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP--I  216 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~--~  216 (300)
                                         ...+.+.|.+.  |++++++++|++++  .++   |.+++|+ +++|.||.|+|..+.  +
T Consensus       186 -------------------~~~l~~~l~~~--gV~i~~~~~v~~i~--~~~---v~~~~g~-i~~D~vi~a~G~~p~~~l  238 (367)
T 1xhc_A          186 -------------------SNMIKDMLEET--GVKFFLNSELLEAN--EEG---VLTNSGF-IEGKVKICAIGIVPNVDL  238 (367)
T ss_dssp             -------------------HHHHHHHHHHT--TEEEECSCCEEEEC--SSE---EEETTEE-EECSCEEEECCEEECCHH
T ss_pred             -------------------HHHHHHHHHHC--CCEEEcCCEEEEEE--eeE---EEECCCE-EEcCEEEECcCCCcCHHH
Confidence                               11233334333  89999999999987  233   6788887 999999999997653  3


Q ss_pred             hhhcCC
Q 022277          217 AKWIGF  222 (300)
Q Consensus       217 r~~~g~  222 (300)
                      .+.+|+
T Consensus       239 l~~~gl  244 (367)
T 1xhc_A          239 ARRSGI  244 (367)
T ss_dssp             HHHTTC
T ss_pred             HHhCCC
Confidence            444454

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.84  E-value=3.3e-08  Score=90.98  Aligned_cols=100  Identities=24%  Similarity=0.384  Sum_probs=75.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++++.+.+.+.-.                  .++                 
T Consensus       150 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~------------------~~~-----------------  194 (565)
T 3ntd_A          150 NVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVD------------------REM-----------------  194 (565)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSC------------------HHH-----------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcC------------------HHH-----------------
Confidence            356899999999999999999999999999999886522100                  000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEc-------------------CCceEEEEEcC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETS-------------------GNGVTILELVN  197 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~-------------------~~~~~~v~~~~  197 (300)
                                           ...+.+.|.+.  |++++++++|++++.+                   +++ +.+.+.+
T Consensus       195 ---------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~  250 (565)
T 3ntd_A          195 ---------------------AGFAHQAIRDQ--GVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGH-LSLTLSN  250 (565)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCE-EEEEETT
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEeCCeEEEEeccccccccccccccccccccCCCc-EEEEEcC
Confidence                                 11233333333  8999999999999873                   344 4577888


Q ss_pred             CcEEEcCEEEEcCCCChH
Q 022277          198 GTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       198 g~~~~ad~vV~A~G~~s~  215 (300)
                      |+.+.+|.||.|+|....
T Consensus       251 g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          251 GELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             SCEEEESEEEECSCEEEC
T ss_pred             CCEEEcCEEEECcCCccc
Confidence            889999999999998653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.84  E-value=5.4e-09  Score=94.42  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            4689999999999999999999999999999993

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.83  E-value=4.3e-09  Score=94.85  Aligned_cols=37  Identities=30%  Similarity=0.574  Sum_probs=34.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .++||+|||||++|+++|+.|++.|++|+|+|+.+.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            4689999999999999999999999999999998744

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.83  E-value=1.6e-08  Score=90.63  Aligned_cols=98  Identities=21%  Similarity=0.308  Sum_probs=72.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                 
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~~-----------------  214 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY------------------DSEL-----------------  214 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS------------------CHHH-----------------
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccccc------------------CHHH-----------------
Confidence            35789999999999999999999999999999998663210                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s  214 (300)
                                           ...+.+.+.+.  |++++++++|++++.  ++ +.+..++|  +++.+|.||+|+|...
T Consensus       215 ---------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~--~~-v~v~~~~G~~~~i~~D~vv~a~G~~p  268 (458)
T 1lvl_A          215 ---------------------TAPVAESLKKL--GIALHLGHSVEGYEN--GC-LLANDGKGGQLRLEADRVLVAVGRRP  268 (458)
T ss_dssp             ---------------------HHHHHHHHHHH--TCEEETTCEEEEEET--TE-EEEECSSSCCCEECCSCEEECCCEEE
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEECCEEEEEEe--CC-EEEEECCCceEEEECCEEEECcCCCc
Confidence                                 11233334333  899999999999986  33 33554456  5899999999999865


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       269 ~  269 (458)
T 1lvl_A          269 R  269 (458)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.82  E-value=9.7e-09  Score=93.07  Aligned_cols=61  Identities=10%  Similarity=0.037  Sum_probs=43.2

Q ss_pred             ecHHHHHHHHHhcCC--CCeEEeCCeEEEEEEcCC-------ceEEEEEcCC-----cEEEcCEEEEcCCCChHh
Q 022277          156 VERRILLETLANQLP--PESVQFSSELAKIETSGN-------GVTILELVNG-----TRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       156 i~~~~l~~~l~~~~~--g~~i~~~~~v~~i~~~~~-------~~~~v~~~~g-----~~~~ad~vV~A~G~~s~~  216 (300)
                      ..|.++.++|...+.  +..|+++++|++++..++       ..|.|++.++     +++.|+.||+|+|....+
T Consensus       142 p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~i  216 (501)
T 4b63_A          142 PARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKM  216 (501)
T ss_dssp             CBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECC
T ss_pred             CCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCC
Confidence            566666666654331  457999999999987543       2477887654     268999999999964433

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.82  E-value=1.4e-07  Score=84.91  Aligned_cols=56  Identities=20%  Similarity=0.202  Sum_probs=45.3

Q ss_pred             HHHHHHHHhcCC----------CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          159 RILLETLANQLP----------PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       159 ~~l~~~l~~~~~----------g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      ..+.+.|.+.+.          +.+|+++++|++|+.+++++. |++.+|++++||.||+|++....
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~vI~a~~~~~l  271 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVT-VKTEDNSVYSADYVMVSASLGVL  271 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEE-EEETTSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEE-EEECCCCEEEcCEEEEecCHHHh
Confidence            366777776652          468999999999999887744 89999988999999999996543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.82  E-value=2.5e-08  Score=90.10  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            5699999999999999999999999999999984

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.81  E-value=3.1e-08  Score=84.23  Aligned_cols=99  Identities=16%  Similarity=0.236  Sum_probs=73.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                    ..                  
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------------~~------------------  185 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE--------------------KI------------------  185 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC--------------------HH------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccC--------------------HH------------------
Confidence            4578999999999999999999999999999988754110                    00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC----C--cEEEcCEEEEcC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN----G--TRIYANIVIGCD  210 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~----g--~~~~ad~vV~A~  210 (300)
                                          ....+.+.+.+.  |++++++++|++++.+++++..|.+.+    |  +.+.+|.||.|+
T Consensus       186 --------------------~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~  243 (320)
T 1trb_A          186 --------------------LIKRLMDKVENG--NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAI  243 (320)
T ss_dssp             --------------------HHHHHHHHHHTS--SEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECS
T ss_pred             --------------------HHHHHHHhcccC--CeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEe
Confidence                                011223333333  899999999999988766655566654    4  479999999999


Q ss_pred             CCChH
Q 022277          211 GIRSP  215 (300)
Q Consensus       211 G~~s~  215 (300)
                      |....
T Consensus       244 G~~p~  248 (320)
T 1trb_A          244 GHSPN  248 (320)
T ss_dssp             CEEES
T ss_pred             CCCCC
Confidence            97643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.80  E-value=2.1e-08  Score=90.84  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~   91 (300)
                      .+||+|||||++|+++|+.|++.   |++|+|||+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            47999999999999999999999   99999999987

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.80  E-value=3.4e-08  Score=88.73  Aligned_cols=98  Identities=12%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+ ..                  ..                  
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~------------------~~------------------  217 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-ED------------------PA------------------  217 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SC------------------HH------------------
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CC------------------HH------------------
Confidence            357899999999999999999999999999999886521 00                  00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                          -...+.+.+.+.  |++++++++|++++.+++. +.|.++ +.++.+|.||+|+|.++.
T Consensus       218 --------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~-~~v~~~-~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          218 --------------------IGEAVTAAFRAE--GIEVLEHTQASQVAHMDGE-FVLTTT-HGELRADKLLVATGRTPN  272 (467)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEETTCCEEEEEEETTE-EEEEET-TEEEEESEEEECSCEEES
T ss_pred             --------------------HHHHHHHHHHhC--CCEEEcCCEEEEEEEeCCE-EEEEEC-CcEEEcCEEEECCCCCcC
Confidence                                011233333333  8999999999999876554 456776 457999999999998765

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.79  E-value=2.3e-08  Score=89.98  Aligned_cols=100  Identities=25%  Similarity=0.404  Sum_probs=74.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                 
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~------------------~~~~-----------------  220 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM------------------DAEI-----------------  220 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS------------------CHHH-----------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccc------------------cHHH-----------------
Confidence            35799999999999999999999999999999998653210                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G  211 (300)
                                           ...+.+.|.+.  |++++++++|++++.++++ +.+.+.   +|  +++.+|.||+|+|
T Consensus       221 ---------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~D~vv~a~G  276 (470)
T 1dxl_A          221 ---------------------RKQFQRSLEKQ--GMKFKLKTKVVGVDTSGDG-VKLTVEPSAGGEQTIIEADVVLVSAG  276 (470)
T ss_dssp             ---------------------HHHHHHHHHHS--SCCEECSEEEEEEECSSSS-EEEEEEESSSCCCEEEEESEEECCCC
T ss_pred             ---------------------HHHHHHHHHHc--CCEEEeCCEEEEEEEcCCe-EEEEEEecCCCcceEEECCEEEECCC
Confidence                                 11233334333  8999999999999876655 335654   44  5799999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      ..+.
T Consensus       277 ~~p~  280 (470)
T 1dxl_A          277 RTPF  280 (470)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            8654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.79  E-value=4.2e-08  Score=89.39  Aligned_cols=38  Identities=26%  Similarity=0.426  Sum_probs=35.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      +..+||+|||||++|+++|+.|++.|++|+|||+.+.+
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   78 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   78 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            35689999999999999999999999999999998755

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.79  E-value=2.9e-08  Score=91.82  Aligned_cols=97  Identities=19%  Similarity=0.342  Sum_probs=74.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||.+|+.+|..|++.|.+|+++++.+.+.+...                  .+                  
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~------------------~~------------------  229 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPID------------------YE------------------  229 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSC------------------HH------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCC------------------HH------------------
Confidence            457999999999999999999999999999999886522100                  00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                          ....+.+.|.+.  |++++++++|++++.++++   |.+.+|+++.+|.||+|+|..+
T Consensus       230 --------------------~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~---v~~~~g~~i~~D~Vi~a~G~~p  282 (588)
T 3ics_A          230 --------------------MAAYVHEHMKNH--DVELVFEDGVDALEENGAV---VRLKSGSVIQTDMLILAIGVQP  282 (588)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEECSCCEEEEEGGGTE---EEETTSCEEECSEEEECSCEEE
T ss_pred             --------------------HHHHHHHHHHHc--CCEEEECCeEEEEecCCCE---EEECCCCEEEcCEEEEccCCCC
Confidence                                011233334333  8999999999999876554   7788898999999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.78  E-value=6e-08  Score=87.37  Aligned_cols=100  Identities=19%  Similarity=0.252  Sum_probs=74.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+++++.+.+.+..                  ..+                  
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~------------------  222 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV------------------DEQ------------------  222 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS------------------CHH------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCccc------------------CHH------------------
Confidence            45789999999999999999999999999999988652210                  000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G~~  213 (300)
                                          ....+.+.|.+.  |++++++++|++++.+++++ .+.+.++   +.+.+|.||.|+|..
T Consensus       223 --------------------~~~~l~~~l~~~--Gv~v~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          223 --------------------VAKEAQKILTKQ--GLKILLGARVTGTEVKNKQV-TVKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             --------------------HHHHHHHHHHHT--TEEEEETCEEEEEEECSSCE-EEEEESSSEEEEEEESEEEECSCEE
T ss_pred             --------------------HHHHHHHHHHhC--CCEEEECCEEEEEEEcCCEE-EEEEEeCCCcEEEECCEEEEeeCCc
Confidence                                011333334333  89999999999999877663 3666654   579999999999976


Q ss_pred             hH
Q 022277          214 SP  215 (300)
Q Consensus       214 s~  215 (300)
                      ..
T Consensus       280 p~  281 (476)
T 3lad_A          280 PV  281 (476)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.78  E-value=1.1e-08  Score=92.72  Aligned_cols=36  Identities=14%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+.+|||||||++|+++|..|++.+++|+|||+++.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            457899999999999999999999999999999874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.78  E-value=3.4e-08  Score=89.14  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5799999999999999999999999999999963

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.78  E-value=4.4e-08  Score=88.61  Aligned_cols=100  Identities=23%  Similarity=0.393  Sum_probs=74.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++|+.+.+.....                  .++                 
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d------------------~~~-----------------  241 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMD------------------GEV-----------------  241 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSC------------------HHH-----------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCC------------------HHH-----------------
Confidence            457899999999999999999999999999999886532100                  000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---C--cEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---G--TRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g--~~~~ad~vV~A~G  211 (300)
                                           ...+.+.|.+.  |++++++++|++++.+++++ .+.+.+   |  +++.+|.||.|+|
T Consensus       242 ---------------------~~~l~~~l~~~--gV~v~~~~~v~~i~~~~~~~-~v~~~~~~~g~~~~i~~D~Vi~a~G  297 (491)
T 3urh_A          242 ---------------------AKQLQRMLTKQ--GIDFKLGAKVTGAVKSGDGA-KVTFEPVKGGEATTLDAEVVLIATG  297 (491)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEECSEEEEEEEEETTEE-EEEEEETTSCCCEEEEESEEEECCC
T ss_pred             ---------------------HHHHHHHHHhC--CCEEEECCeEEEEEEeCCEE-EEEEEecCCCceEEEEcCEEEEeeC
Confidence                                 11233334333  89999999999999877663 366653   4  5799999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      ....
T Consensus       298 ~~p~  301 (491)
T 3urh_A          298 RKPS  301 (491)
T ss_dssp             CEEC
T ss_pred             CccC
Confidence            8654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.78  E-value=6e-08  Score=87.70  Aligned_cols=99  Identities=17%  Similarity=0.266  Sum_probs=73.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+++|+.+.+.+.-.                  .++                 
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d------------------~~~-----------------  217 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQD------------------EEM-----------------  217 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCC------------------HHH-----------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCC------------------HHH-----------------
Confidence            457899999999999999999999999999999986531100                  000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc--CC--cEEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~vV~A~G~  212 (300)
                                           ...+.+.|.+   +++++++++|++++.+++++. +.+.  +|  +++.+|.||+|+|.
T Consensus       218 ---------------------~~~l~~~l~~---~V~i~~~~~v~~i~~~~~~v~-v~~~~~~G~~~~i~~D~Vi~a~G~  272 (492)
T 3ic9_A          218 ---------------------KRYAEKTFNE---EFYFDAKARVISTIEKEDAVE-VIYFDKSGQKTTESFQYVLAATGR  272 (492)
T ss_dssp             ---------------------HHHHHHHHHT---TSEEETTCEEEEEEECSSSEE-EEEECTTCCEEEEEESEEEECSCC
T ss_pred             ---------------------HHHHHHHHhh---CcEEEECCEEEEEEEcCCEEE-EEEEeCCCceEEEECCEEEEeeCC
Confidence                                 1122233322   379999999999998777644 6664  67  57999999999998


Q ss_pred             ChH
Q 022277          213 RSP  215 (300)
Q Consensus       213 ~s~  215 (300)
                      ...
T Consensus       273 ~p~  275 (492)
T 3ic9_A          273 KAN  275 (492)
T ss_dssp             EES
T ss_pred             ccC
Confidence            653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.77  E-value=1.6e-08  Score=90.78  Aligned_cols=34  Identities=26%  Similarity=0.616  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            5899999999999999999999999999999987

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.76  E-value=5e-08  Score=87.46  Aligned_cols=34  Identities=26%  Similarity=0.567  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            4589999999999999999999999999999993

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.76  E-value=1.8e-08  Score=90.54  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk   36 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE   36 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC
Confidence            468999999999999999999999999999999

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.76  E-value=4.8e-08  Score=88.07  Aligned_cols=98  Identities=20%  Similarity=0.315  Sum_probs=72.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...-                  ..++                 
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------~~~~-----------------  229 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIY------------------DGDM-----------------  229 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSS------------------CHHH-----------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcC------------------CHHH-----------------
Confidence            45799999999999999999999999999999987652100                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                           ...+.+.+.+.  |++++++++|++++.+ +++..+.+++ .++.+|.||+|+|..+
T Consensus       230 ---------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~-~~v~~v~~~~-~~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          230 ---------------------AEYIYKEADKH--HIEILTNENVKAFKGN-ERVEAVETDK-GTYKADLVLVSVGVKP  282 (480)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEECSCCEEEEEES-SBEEEEEETT-EEEECSEEEECSCEEE
T ss_pred             ---------------------HHHHHHHHHHc--CcEEEcCCEEEEEEcC-CcEEEEEECC-CEEEcCEEEECcCCCc
Confidence                                 11233333333  8999999999999865 4444566654 4799999999999865

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.76  E-value=2.7e-08  Score=89.71  Aligned_cols=35  Identities=26%  Similarity=0.512  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46899999999999999999999999999999974

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.76  E-value=7.4e-09  Score=92.60  Aligned_cols=37  Identities=32%  Similarity=0.425  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|||+.+.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            4689999999999999999999999999999998866

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.75  E-value=5e-08  Score=83.47  Aligned_cols=95  Identities=16%  Similarity=0.253  Sum_probs=74.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+..                                         
T Consensus       172 ~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-----------------------------------------  210 (338)
T 3itj_A          172 RNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-----------------------------------------  210 (338)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-----------------------------------------
Confidence            357899999999999999999999999999999876521                                         


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC-----CcEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN-----GTRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~-----g~~~~ad~vV~A~G  211 (300)
                                           ...+.+.+.+. .|++++++++|++++.+++++..|.+.+     +..+.+|.||.|+|
T Consensus       211 ---------------------~~~~~~~l~~~-~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G  268 (338)
T 3itj_A          211 ---------------------STIMQKRAEKN-EKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIG  268 (338)
T ss_dssp             ---------------------CHHHHHHHHHC-TTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSC
T ss_pred             ---------------------CHHHHHHHHhc-CCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeC
Confidence                                 01233333332 3889999999999998877666677765     35799999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       269 ~~p  271 (338)
T 3itj_A          269 HTP  271 (338)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.75  E-value=2.7e-08  Score=96.81  Aligned_cols=36  Identities=33%  Similarity=0.570  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~  163 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            579999999999999999999999999999998866

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.74  E-value=7.4e-08  Score=86.82  Aligned_cols=101  Identities=19%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++++.+.+...-                  ..++                 
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------------------d~~~-----------------  230 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSF------------------DSMI-----------------  230 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS------------------CHHH-----------------
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccccc------------------CHHH-----------------
Confidence            35789999999999999999999999999999988652110                  0000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCc-eEEEEEcC---C----cEEEcCEEEE
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG-VTILELVN---G----TRIYANIVIG  208 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~-~~~v~~~~---g----~~~~ad~vV~  208 (300)
                                           ...+.+.|.+.  |++++++++|++++.++++ .+.+.+.+   |    +.+.+|.||+
T Consensus       231 ---------------------~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~  287 (478)
T 3dk9_A          231 ---------------------STNCTEELENA--GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLW  287 (478)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEE
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEE
Confidence                                 11333444333  8999999999999887665 34577765   2    5789999999


Q ss_pred             cCCCChH
Q 022277          209 CDGIRSP  215 (300)
Q Consensus       209 A~G~~s~  215 (300)
                      |+|....
T Consensus       288 a~G~~p~  294 (478)
T 3dk9_A          288 AIGRVPN  294 (478)
T ss_dssp             CSCEEES
T ss_pred             eeccccC
Confidence            9997543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.74  E-value=1.8e-08  Score=90.88  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            46899999999999999999999999999999763

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.74  E-value=9.6e-08  Score=80.88  Aligned_cols=95  Identities=17%  Similarity=0.253  Sum_probs=72.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------------  181 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA----------------------------------------  181 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSC----------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCC----------------------------------------
Confidence            3579999999999999999999999999999988754100                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G  211 (300)
                                            ..+.+.+.+. .|++++++++++++..+++++..|.+.   +|+  .+.+|.||.|+|
T Consensus       182 ----------------------~~~~~~l~~~-~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  238 (311)
T 2q0l_A          182 ----------------------PITLEHAKNN-DKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVG  238 (311)
T ss_dssp             ----------------------HHHHHHHHTC-TTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ----------------------HHHHHHHhhC-CCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEec
Confidence                                  0223333322 388999999999998775654456665   565  689999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       239 ~~p  241 (311)
T 2q0l_A          239 YDV  241 (311)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.73  E-value=8.8e-09  Score=88.17  Aligned_cols=41  Identities=27%  Similarity=0.434  Sum_probs=35.8

Q ss_pred             ccCCCCcEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcC
Q 022277           54 ADVRKEDIVIVGAGIAGLATAVSLQR--LGIGSLVIEQADSLR   94 (300)
Q Consensus        54 ~~~~~~dVvIIGgG~aGl~~A~~L~~--~G~~V~viE~~~~~~   94 (300)
                      .....+||+||||||+||+||+.|++  .|++|+|||+.+.++
T Consensus        61 ~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           61 DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             HHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             hhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            34467899999999999999999975  499999999998764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.72  E-value=2.2e-09  Score=97.20  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|++.
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            35899999999999999999999999999999975

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.72  E-value=5.4e-08  Score=83.80  Aligned_cols=34  Identities=38%  Similarity=0.570  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +||+|||||++|+++|+.|++.|++|+|+|+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            6999999999999999999999999999999874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.71  E-value=1.1e-07  Score=85.92  Aligned_cols=99  Identities=18%  Similarity=0.247  Sum_probs=72.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||..|+.+|..|++.|.+|+++++.... ..                  +..++                 
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l-~~------------------~d~~~-----------------  229 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL-RG------------------FDQQM-----------------  229 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS-TT------------------SCHHH-----------------
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC-cc------------------cCHHH-----------------
Confidence            3568999999999999999999999999999985321 00                  00000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCc-----EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT-----RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~-----~~~ad~vV~A~G  211 (300)
                                           ...+.+.|.+.  |++++++++|++++..+++...|.+.++.     ++.+|.||+|+|
T Consensus       230 ---------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G  286 (483)
T 3dgh_A          230 ---------------------AELVAASMEER--GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIG  286 (483)
T ss_dssp             ---------------------HHHHHHHHHHT--TCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSC
T ss_pred             ---------------------HHHHHHHHHhC--CCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcc
Confidence                                 11233344333  89999999999998866543447776653     799999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       287 ~~p  289 (483)
T 3dgh_A          287 RKG  289 (483)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.69  E-value=1.2e-07  Score=80.69  Aligned_cols=94  Identities=17%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       154 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~----------------------------------------  193 (319)
T 3cty_A          154 KGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCE----------------------------------------  193 (319)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSC----------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCC----------------------------------------
Confidence            3478999999999999999999999999999987754100                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G  211 (300)
                                            ..+.+.+.+.  |++++++++++++..+++.+..|.+.   +|+  .+.+|.||.|+|
T Consensus       194 ----------------------~~l~~~l~~~--gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  249 (319)
T 3cty_A          194 ----------------------NAYVQEIKKR--NIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVG  249 (319)
T ss_dssp             ----------------------HHHHHHHHHT--TCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCC
T ss_pred             ----------------------HHHHHHHhcC--CcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeC
Confidence                                  1223333332  89999999999998775544456664   564  689999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       250 ~~p  252 (319)
T 3cty_A          250 LIP  252 (319)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.68  E-value=1.7e-07  Score=79.30  Aligned_cols=95  Identities=18%  Similarity=0.334  Sum_probs=72.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+..                                         
T Consensus       143 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------------------------------------  181 (310)
T 1fl2_A          143 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-----------------------------------------  181 (310)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCc-----------------------------------------
Confidence            357899999999999999999999999999998875410                                         


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---Cc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---GT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g~--~~~ad~vV~A~G  211 (300)
                                          + ..+.+.|.+ ..|++++++++++++..+++++..|.+.+   |+  .+.+|.||.|+|
T Consensus       182 --------------------~-~~~~~~l~~-~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  239 (310)
T 1fl2_A          182 --------------------D-QVLQDKLRS-LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  239 (310)
T ss_dssp             --------------------C-HHHHHHHHT-CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             --------------------c-HHHHHHHhh-CCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeC
Confidence                                0 123333333 13889999999999987766554566653   53  689999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       240 ~~p  242 (310)
T 1fl2_A          240 LLP  242 (310)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.67  E-value=5.4e-08  Score=87.33  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            46899999999999999999999999999999973

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.67  E-value=4.4e-08  Score=88.81  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ++||+|||||++|+++|..|++.|++|+|+|+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899999999999999999999999999999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.67  E-value=1.2e-07  Score=81.19  Aligned_cols=97  Identities=16%  Similarity=0.183  Sum_probs=72.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                    ..                   
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~--------------------~~-------------------  192 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH--------------------EA-------------------  192 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSC--------------------HH-------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCcc--------------------HH-------------------
Confidence            578999999999999999999999999999998754210                    00                   


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEEcCEEEEcCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDGI  212 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G~  212 (300)
                                         ....+.+.+.+.  |++++++++|++++.+ +++..|.+.   +|  +++.+|.||.|+|.
T Consensus       193 -------------------~~~~l~~~l~~~--gv~v~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (335)
T 2zbw_A          193 -------------------SVKELMKAHEEG--RLEVLTPYELRRVEGD-ERVRWAVVFHNQTQEELALEVDAVLILAGY  250 (335)
T ss_dssp             -------------------HHHHHHHHHHTT--SSEEETTEEEEEEEES-SSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             -------------------HHHHHHhccccC--CeEEecCCcceeEccC-CCeeEEEEEECCCCceEEEecCEEEEeecC
Confidence                               011233333333  8999999999999874 444446665   66  57999999999997


Q ss_pred             ChH
Q 022277          213 RSP  215 (300)
Q Consensus       213 ~s~  215 (300)
                      ...
T Consensus       251 ~p~  253 (335)
T 2zbw_A          251 ITK  253 (335)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.66  E-value=1.9e-07  Score=79.04  Aligned_cols=95  Identities=15%  Similarity=0.271  Sum_probs=73.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                         
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~-----------------------------------------  184 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA-----------------------------------------  184 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS-----------------------------------------
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC-----------------------------------------
Confidence            457899999999999999999999999999998875410                                         


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc--CCc--EEEcCEEEEcCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV--NGT--RIYANIVIGCDGI  212 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g~--~~~ad~vV~A~G~  212 (300)
                                          . ..+.+.+.+. .|++++++++++++..+++++..|.+.  +|+  ++.+|.||.|+|.
T Consensus       185 --------------------~-~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~  242 (315)
T 3r9u_A          185 --------------------A-PSTVEKVKKN-EKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL  242 (315)
T ss_dssp             --------------------C-HHHHHHHHHC-TTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred             --------------------C-HHHHHHHHhc-CCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence                                0 0122222222 289999999999998877665556665  775  7899999999997


Q ss_pred             Ch
Q 022277          213 RS  214 (300)
Q Consensus       213 ~s  214 (300)
                      ..
T Consensus       243 ~p  244 (315)
T 3r9u_A          243 NV  244 (315)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.66  E-value=8.6e-08  Score=86.64  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCcEEEEec
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQ   89 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~   89 (300)
                      ..+||+|||||++|+++|+.|++ .|++|+|+|+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            46899999999999999999999 9999999993

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.66  E-value=2.1e-07  Score=84.06  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||.+|+.+|..|++.|.+|+++++......                   +..++                 
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~d~~~-----------------  227 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRG-------------------FDQQM-----------------  227 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------SCHHH-----------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccccc-------------------CCHHH-----------------
Confidence            356899999999999999999999999999998642210                   00000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---Cc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---GT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g~--~~~ad~vV~A~G  211 (300)
                                           ...+.+.|.+.  |+++++++++++++..+++...|.+.+   |+  ++.+|.||.|+|
T Consensus       228 ---------------------~~~l~~~l~~~--gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G  284 (488)
T 3dgz_A          228 ---------------------SSLVTEHMESH--GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIG  284 (488)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSC
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEccc
Confidence                                 11233334333  899999999999987554434466554   54  478999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       285 ~~p  287 (488)
T 3dgz_A          285 RVP  287 (488)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.64  E-value=7.3e-08  Score=86.19  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .++||+|||||++|+++|..|++.|++|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            46899999999999999999999999999999973

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.64  E-value=2.3e-07  Score=79.29  Aligned_cols=96  Identities=18%  Similarity=0.311  Sum_probs=71.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+..                                         
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-----------------------------------------  196 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-----------------------------------------  196 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc-----------------------------------------
Confidence            457899999999999999999999999999999875410                                         


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC--ceEEEEEc---CC--cEEEcCEEEEc
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN--GVTILELV---NG--TRIYANIVIGC  209 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~--~~~~v~~~---~g--~~~~ad~vV~A  209 (300)
                                           ...+.+.+.+. .|++++++++++++..+++  ++..|.+.   +|  +++.+|.||.|
T Consensus       197 ---------------------~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a  254 (333)
T 1vdc_A          197 ---------------------SKIMQQRALSN-PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  254 (333)
T ss_dssp             ---------------------CHHHHHHHHTC-TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ---------------------cHHHHHHHHhC-CCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEE
Confidence                                 00122222222 2889999999999987764  44445554   45  47899999999


Q ss_pred             CCCChH
Q 022277          210 DGIRSP  215 (300)
Q Consensus       210 ~G~~s~  215 (300)
                      +|....
T Consensus       255 ~G~~p~  260 (333)
T 1vdc_A          255 IGHEPA  260 (333)
T ss_dssp             SCEEES
T ss_pred             eCCccc
Confidence            997653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.64  E-value=2.4e-08  Score=94.05  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=35.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            35689999999999999999999999999999998865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.64  E-value=2.3e-07  Score=79.13  Aligned_cols=94  Identities=18%  Similarity=0.308  Sum_probs=70.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       151 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------------  190 (325)
T 2q7v_A          151 KGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRAN----------------------------------------  190 (325)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC----------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcc----------------------------------------
Confidence            3478999999999999999999999999999988754100                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CCc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NGT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~ad~vV~A~G  211 (300)
                                            ..+.+.+.+. .|++++++++++++..+ +++..|.+.   +|+  ++.+|.||.|+|
T Consensus       191 ----------------------~~~~~~l~~~-~gv~i~~~~~v~~i~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  246 (325)
T 2q7v_A          191 ----------------------KVAQARAFAN-PKMKFIWDTAVEEIQGA-DSVSGVKLRNLKTGEVSELATDGVFIFIG  246 (325)
T ss_dssp             ----------------------HHHHHHHHTC-TTEEEECSEEEEEEEES-SSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ----------------------hHHHHHHHhc-CCceEecCCceEEEccC-CcEEEEEEEECCCCcEEEEEcCEEEEccC
Confidence                                  1222333222 38899999999999874 444456665   564  789999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       247 ~~p  249 (325)
T 2q7v_A          247 HVP  249 (325)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.64  E-value=7.1e-08  Score=83.54  Aligned_cols=97  Identities=24%  Similarity=0.290  Sum_probs=71.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+....                    .+                  
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~--------------------~~------------------  204 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHG--------------------KT------------------  204 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCS--------------------HH------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCH--------------------HH------------------
Confidence            4689999999999999999999999999999987542110                    00                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc--CC--cEEEcCEEEEcCCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV--NG--TRIYANIVIGCDGIR  213 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~--~g--~~~~ad~vV~A~G~~  213 (300)
                                          ...+.+.+.+.  |++++++++|++++.+++++..|.+.  +|  ..+.+|.||.|+|..
T Consensus       205 --------------------~~~l~~~~~~~--gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~  262 (360)
T 3ab1_A          205 --------------------AHEVERARANG--TIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK  262 (360)
T ss_dssp             --------------------HHSSHHHHHHT--SEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred             --------------------HHHHHHHhhcC--ceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence                                00112222222  78999999999998876654456664  77  579999999999976


Q ss_pred             h
Q 022277          214 S  214 (300)
Q Consensus       214 s  214 (300)
                      .
T Consensus       263 p  263 (360)
T 3ab1_A          263 S  263 (360)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.63  E-value=2.4e-07  Score=83.15  Aligned_cols=98  Identities=26%  Similarity=0.393  Sum_probs=73.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||+.|+.+|..|++.|.+|+++++.+.+.+..                                       
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------  211 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL---------------------------------------  211 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS---------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC---------------------------------------
Confidence            35789999999999999999999999999999988652110                                       


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcC-CceEEEEEc--CCc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSG-NGVTILELV--NGT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~-~~~~~v~~~--~g~--~~~ad~vV~A~G  211 (300)
                                          ...++.+.+.+.+ .++++++++|++++.++ +++ .|.+.  +|+  ++.+|.||.|+|
T Consensus       212 --------------------~d~~~~~~l~~~l-~v~i~~~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G  269 (466)
T 3l8k_A          212 --------------------EDQDIVNTLLSIL-KLNIKFNSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAG  269 (466)
T ss_dssp             --------------------CCHHHHHHHHHHH-CCCEECSCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCC
T ss_pred             --------------------CCHHHHHHHHhcC-EEEEEECCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcC
Confidence                                0012233333333 27999999999998876 553 47777  665  799999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      ....
T Consensus       270 ~~p~  273 (466)
T 3l8k_A          270 RRPV  273 (466)
T ss_dssp             EEEC
T ss_pred             CCcc
Confidence            7653

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.62  E-value=2.2e-07  Score=80.58  Aligned_cols=106  Identities=14%  Similarity=0.201  Sum_probs=69.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||..|+.+|..|++.|.+|+++++.+.+.....               +                       
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~---------------d-----------------------  207 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDA---------------D-----------------------  207 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------------------------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCC---------------C-----------------------
Confidence            35899999999999999999999999999999875421000               0                       


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCC-CeEEeCCeEEEEEEcCCceEEEEEcCCcEEE-cCEEEEcCCCChH
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPP-ESVQFSSELAKIETSGNGVTILELVNGTRIY-ANIVIGCDGIRSP  215 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g-~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~-ad~vV~A~G~~s~  215 (300)
                              .   ........+..+.+.|.+  .| ++++.+++|++++.+++. +.|.+.+|+.+. +|.||.|+|....
T Consensus       208 --------~---~~~~~~~~~~~l~~~l~~--~g~v~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~~d~vi~a~G~~~~  273 (369)
T 3d1c_A          208 --------P---SVRLSPYTRQRLGNVIKQ--GARIEMNVHYTVKDIDFNNGQ-YHISFDSGQSVHTPHEPILATGFDAT  273 (369)
T ss_dssp             --------C---TTSCCHHHHHHHHHHHHT--TCCEEEECSCCEEEEEEETTE-EEEEESSSCCEEESSCCEECCCBCGG
T ss_pred             --------C---CccCCHHHHHHHHHHHhh--CCcEEEecCcEEEEEEecCCc-eEEEecCCeEeccCCceEEeeccCCc
Confidence                    0   000000011233333333  25 899999999999866555 458888887665 5999999997653

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.62  E-value=3.2e-07  Score=77.81  Aligned_cols=103  Identities=22%  Similarity=0.329  Sum_probs=76.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                         
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~-----------------------------------------  191 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA-----------------------------------------  191 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-----------------------------------------
Confidence            457899999999999999999999999999999876521                                         


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---Cc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---GT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g~--~~~ad~vV~A~G  211 (300)
                                           ...+.+.+.+. .|++++++++++++..+ +++..|.+.+   |+  .+.+|.||.|+|
T Consensus       192 ---------------------~~~~~~~~~~~-~gv~~~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~~~~D~vv~a~G  248 (323)
T 3f8d_A          192 ---------------------QPIYVETVKKK-PNVEFVLNSVVKEIKGD-KVVKQVVVENLKTGEIKELNVNGVFIEIG  248 (323)
T ss_dssp             ---------------------CHHHHHHHHTC-TTEEEECSEEEEEEEES-SSEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ---------------------CHHHHHHHHhC-CCcEEEeCCEEEEEecc-CceeEEEEEECCCCceEEEEcCEEEEEEC
Confidence                                 01222333332 28899999999999876 4445577765   75  799999999999


Q ss_pred             CChH--hhhhcCCC
Q 022277          212 IRSP--IAKWIGFS  223 (300)
Q Consensus       212 ~~s~--~r~~~g~~  223 (300)
                      ....  +.+.+|+.
T Consensus       249 ~~p~~~~~~~~g~~  262 (323)
T 3f8d_A          249 FDPPTDFAKSNGIE  262 (323)
T ss_dssp             EECCHHHHHHTTCC
T ss_pred             CCCChhHHhhcCee
Confidence            7653  33444443

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.61  E-value=9.4e-09  Score=92.00  Aligned_cols=37  Identities=27%  Similarity=0.314  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-c------CCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-L------GIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-~------G~~V~viE~~~~~   93 (300)
                      ..+||+|||||++|+++|..|++ .      |++|+|||+.+.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            45799999999999999999999 7      9999999998765

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.60  E-value=5.5e-08  Score=87.99  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCcEEEEec
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQ   89 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~   89 (300)
                      ..+||+|||||++|+++|+.|++ .|++|+|||+
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            35899999999999999999999 9999999993

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.58  E-value=4.2e-07  Score=81.47  Aligned_cols=135  Identities=15%  Similarity=0.203  Sum_probs=77.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCce----eeEchhHHHHHHHcCCcHHHHhccccccceE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTS----LTLFKNGWSVLDALGVGSDLRSQFLEIKGMA  130 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  130 (300)
                      ...+|+|||||..|+.+|..|++.  |.+|++++|.+.+.+....    ....+...+.+..+.  ..........    
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~----  299 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSRE--HAERERLLRE----  299 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSC--HHHHHHHHHH----
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCC--HHHHHHHHHH----
Confidence            357899999999999999999999  8999999999865332110    001111122222221  1100000000    


Q ss_pred             EEcCCCceEEEecCCCCCCCcceeeecH---HHHHHHHH----hcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CCc-
Q 022277          131 VKSEDGRELRSFGFKDEDASQEVRAVER---RILLETLA----NQLPPESVQFSSELAKIETSGNGVTILELV---NGT-  199 (300)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~l~~~l~----~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g~-  199 (300)
                                       .....+..++.   ..+.+.+.    ..-.+++++++++|++++.++++ +.|.+.   +|+ 
T Consensus       300 -----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~g~~  361 (463)
T 3s5w_A          300 -----------------YHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG-IELALRDAGSGEL  361 (463)
T ss_dssp             -----------------TGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE-EEEEEEETTTCCE
T ss_pred             -----------------hhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE-EEEEEEEcCCCCe
Confidence                             00000000110   01111111    11148999999999999887766 557776   665 


Q ss_pred             -EEEcCEEEEcCCCChH
Q 022277          200 -RIYANIVIGCDGIRSP  215 (300)
Q Consensus       200 -~~~ad~vV~A~G~~s~  215 (300)
                       ++.+|.||.|+|....
T Consensus       362 ~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          362 SVETYDAVILATGYERQ  378 (463)
T ss_dssp             EEEEESEEEECCCEECC
T ss_pred             EEEECCEEEEeeCCCCC
Confidence             4899999999997643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.56  E-value=4.3e-08  Score=85.81  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            468999999999999999999999999999999876

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.55  E-value=1.8e-08  Score=98.79  Aligned_cols=36  Identities=31%  Similarity=0.502  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      .+||+|||||++|+++|..|++.|+ +|+|||+.+.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            5799999999999999999999999 79999998765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.53  E-value=6.4e-07  Score=80.02  Aligned_cols=105  Identities=22%  Similarity=0.357  Sum_probs=73.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++++.+.+.....                                      
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~--------------------------------------  188 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSF--------------------------------------  188 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTS--------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhc--------------------------------------
Confidence            346899999999999999999999999999999886522100                                      


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC-CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL-PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-  214 (300)
                                   +        .++.+.+.+.+ ..++++++++|++++.++ ++..+ ..+++++.+|.||.|+|... 
T Consensus       189 -------------~--------~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~-~v~~v-~~~g~~i~~D~Vv~a~G~~p~  245 (449)
T 3kd9_A          189 -------------D--------KEVTDILEEKLKKHVNLRLQEITMKIEGEE-RVEKV-VTDAGEYKAELVILATGIKPN  245 (449)
T ss_dssp             -------------C--------HHHHHHHHHHHTTTSEEEESCCEEEEECSS-SCCEE-EETTEEEECSEEEECSCEEEC
T ss_pred             -------------C--------HHHHHHHHHHHHhCcEEEeCCeEEEEeccC-cEEEE-EeCCCEEECCEEEEeeCCccC
Confidence                         0        02222222222 127999999999997654 43323 45667899999999999864 


Q ss_pred             -HhhhhcCC
Q 022277          215 -PIAKWIGF  222 (300)
Q Consensus       215 -~~r~~~g~  222 (300)
                       .+.+.+|+
T Consensus       246 ~~l~~~~gl  254 (449)
T 3kd9_A          246 IELAKQLGV  254 (449)
T ss_dssp             CHHHHHTTC
T ss_pred             HHHHHhCCc
Confidence             34444444

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.53  E-value=9e-08  Score=83.03  Aligned_cols=38  Identities=37%  Similarity=0.532  Sum_probs=35.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA-DSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~-~~~   93 (300)
                      ....||+|||||++||++|+.|+++|++|+|+|++ +.+
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            35689999999999999999999999999999999 765

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.52  E-value=9.9e-08  Score=89.56  Aligned_cols=37  Identities=30%  Similarity=0.496  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4689999999999999999999999999999998866

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.52  E-value=9.3e-07  Score=81.88  Aligned_cols=35  Identities=23%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ...+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            45789999999999999999999999999999984

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.52  E-value=3.9e-08  Score=88.06  Aligned_cols=37  Identities=27%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~   93 (300)
                      ..+||+|||||++|+.+|..|++.|  ++|+|||+.+.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            4579999999999999999999998  999999999865

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.51  E-value=1.1e-07  Score=83.75  Aligned_cols=38  Identities=26%  Similarity=0.419  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~~   94 (300)
                      ..+||+|||||++||++|+.|++. |++|+|+|+++.++
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            468999999999999999999999 99999999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.51  E-value=2.9e-08  Score=93.96  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=35.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            34689999999999999999999999999999998875

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.47  E-value=4.4e-07  Score=77.71  Aligned_cols=94  Identities=21%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~----------------------------------------  193 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRAS----------------------------------------  193 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSC----------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCcc----------------------------------------
Confidence            4578999999999999999999999999999988754100                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc---CC--cEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV---NG--TRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~---~g--~~~~ad~vV~A~G  211 (300)
                                            ..+.+.+.+. .|++++++++|++++.+++ +..|.+.   +|  +.+.+|.||.|+|
T Consensus       194 ----------------------~~~~~~~~~~-~gV~v~~~~~v~~i~~~~~-~~~v~~~~~~~g~~~~i~~D~vi~a~G  249 (335)
T 2a87_A          194 ----------------------KIMLDRARNN-DKIRFLTNHTVVAVDGDTT-VTGLRVRDTNTGAETTLPVTGVFVAIG  249 (335)
T ss_dssp             ----------------------TTHHHHHHHC-TTEEEECSEEEEEEECSSS-CCEEEEEEETTSCCEEECCSCEEECSC
T ss_pred             ----------------------HHHHHHHhcc-CCcEEEeCceeEEEecCCc-EeEEEEEEcCCCceEEeecCEEEEccC
Confidence                                  0111122222 2889999999999986643 2234443   44  4789999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       250 ~~p  252 (335)
T 2a87_A          250 HEP  252 (335)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.47  E-value=4.3e-07  Score=82.18  Aligned_cols=96  Identities=21%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--------------CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--------------GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL  124 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--------------G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~  124 (300)
                      ..++|||||++|+++|..|++.              ..+|+|+|+.+.+.+.-.                  +.      
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~------------------~~------  273 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFE------------------KK------  273 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSC------------------HH------
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCC------------------HH------
Confidence            4799999999999999999753              368999999987632100                  00      


Q ss_pred             cccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCc----E
Q 022277          125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGT----R  200 (300)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~----~  200 (300)
                                                      -...+.+.|.+.  |++++++++|++++.+. ....+...+|+    +
T Consensus       274 --------------------------------~~~~~~~~L~~~--GV~v~~~~~v~~v~~~~-~~~~~~~~dg~~~~~~  318 (502)
T 4g6h_A          274 --------------------------------LSSYAQSHLENT--SIKVHLRTAVAKVEEKQ-LLAKTKHEDGKITEET  318 (502)
T ss_dssp             --------------------------------HHHHHHHHHHHT--TCEEETTEEEEEECSSE-EEEEEECTTSCEEEEE
T ss_pred             --------------------------------HHHHHHHHHHhc--ceeeecCceEEEEeCCc-eEEEEEecCcccceee
Confidence                                            011333444444  99999999999985332 12334455663    6


Q ss_pred             EEcCEEEEcCCCC
Q 022277          201 IYANIVIGCDGIR  213 (300)
Q Consensus       201 ~~ad~vV~A~G~~  213 (300)
                      +.+|.||.|+|..
T Consensus       319 i~ad~viwa~Gv~  331 (502)
T 4g6h_A          319 IPYGTLIWATGNK  331 (502)
T ss_dssp             EECSEEEECCCEE
T ss_pred             eccCEEEEccCCc
Confidence            9999999999964

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.47  E-value=1.1e-06  Score=80.68  Aligned_cols=35  Identities=43%  Similarity=0.654  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~   91 (300)
                      ..+|+||||||.+||.+|..|++. |.+|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            569999999999999999999975 89999999987

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.46  E-value=5.3e-07  Score=76.81  Aligned_cols=92  Identities=18%  Similarity=0.175  Sum_probs=70.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~-----------------------------------------  192 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH-----------------------------------------  192 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC-----------------------------------------
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc-----------------------------------------
Confidence            568999999999999999999999999999988754210                                         


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC-----CcEEEcCEEEEcCCC
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN-----GTRIYANIVIGCDGI  212 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~-----g~~~~ad~vV~A~G~  212 (300)
                                           ....+.|.+.  |++++.++++++++.+++ +..|.+.+     ++.+.+|.||.|+|.
T Consensus       193 ---------------------~~~~~~l~~~--gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~  248 (332)
T 3lzw_A          193 ---------------------EHSVENLHAS--KVNVLTPFVPAELIGEDK-IEQLVLEEVKGDRKEILEIDDLIVNYGF  248 (332)
T ss_dssp             ---------------------HHHHHHHHHS--SCEEETTEEEEEEECSSS-CCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred             ---------------------HHHHHHHhcC--CeEEEeCceeeEEecCCc-eEEEEEEecCCCceEEEECCEEEEeecc
Confidence                                 0111223232  899999999999987655 34466655     347999999999997


Q ss_pred             Ch
Q 022277          213 RS  214 (300)
Q Consensus       213 ~s  214 (300)
                      ..
T Consensus       249 ~p  250 (332)
T 3lzw_A          249 VS  250 (332)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.45  E-value=5.9e-07  Score=81.84  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|||+|||||++|+.+|..+++.|.+|+|+|+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            58999999999999999999999999999998653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.45  E-value=1.1e-06  Score=79.85  Aligned_cols=95  Identities=16%  Similarity=0.315  Sum_probs=71.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+++++.+.+...                                        
T Consensus       354 ~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~----------------------------------------  393 (521)
T 1hyu_A          354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD----------------------------------------  393 (521)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSC----------------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcC----------------------------------------
Confidence            3568999999999999999999999999999988754100                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---Cc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---GT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g~--~~~ad~vV~A~G  211 (300)
                                            ..+.+.|.+ .+|++++++++++++..+++++..|.+.+   |+  .+.+|.||+|+|
T Consensus       394 ----------------------~~l~~~l~~-~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  450 (521)
T 1hyu_A          394 ----------------------QVLQDKVRS-LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIG  450 (521)
T ss_dssp             ----------------------HHHHHHHTT-CTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ----------------------HHHHHHHhc-CCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcC
Confidence                                  122233322 24889999999999987666655566653   53  689999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       451 ~~p  453 (521)
T 1hyu_A          451 LLP  453 (521)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.43  E-value=1.8e-06  Score=79.95  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||..|+.+|..|++.|.+|+++++. .+.+.                  +..++                  
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~------------------~d~~~------------------  328 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG------------------FDQQM------------------  328 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT------------------SCHHH------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc------------------CCHHH------------------
Confidence            458999999999999999999999999999987 32110                  00000                  


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEc------C---CceE-EEEEcCCcEEE--cCE
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETS------G---NGVT-ILELVNGTRIY--ANI  205 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~------~---~~~~-~v~~~~g~~~~--ad~  205 (300)
                                          ...+.+.|.+.  |+++++++.+++++..      +   +++. .+...+|+.+.  +|.
T Consensus       329 --------------------~~~~~~~l~~~--gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~  386 (598)
T 2x8g_A          329 --------------------AEKVGDYMENH--GVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFET  386 (598)
T ss_dssp             --------------------HHHHHHHHHHT--TCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESE
T ss_pred             --------------------HHHHHHHHHhC--CCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCE
Confidence                                11233333333  8999999988888643      2   2321 22345776555  999


Q ss_pred             EEEcCCCChH
Q 022277          206 VIGCDGIRSP  215 (300)
Q Consensus       206 vV~A~G~~s~  215 (300)
                      ||.|+|....
T Consensus       387 vi~a~G~~p~  396 (598)
T 2x8g_A          387 VIFAVGREPQ  396 (598)
T ss_dssp             EEECSCEEEC
T ss_pred             EEEEeCCccc
Confidence            9999997653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.42  E-value=2.5e-06  Score=77.54  Aligned_cols=99  Identities=19%  Similarity=0.137  Sum_probs=67.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+++|||||.+|+.+|..|++.|.+|+++++.. +...                  +..++                 
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~l~~------------------~d~~~-----------------  252 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRG------------------FDQDM-----------------  252 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTT------------------SCHHH-----------------
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc-cccc------------------CCHHH-----------------
Confidence            34679999999999999999999999999999853 2110                  00000                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC---ceEEEE--EcCC-c--EEEcCEEEE
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN---GVTILE--LVNG-T--RIYANIVIG  208 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~---~~~~v~--~~~g-~--~~~ad~vV~  208 (300)
                                           ...+.+.|.+.  |+++++++++++++..++   +.+.+.  ..+| +  .+.+|.||.
T Consensus       253 ---------------------~~~~~~~l~~~--GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~  309 (519)
T 3qfa_A          253 ---------------------ANKIGEHMEEH--GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVML  309 (519)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEE
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEE
Confidence                                 11233334333  899999998888875432   222233  3455 2  568999999


Q ss_pred             cCCCCh
Q 022277          209 CDGIRS  214 (300)
Q Consensus       209 A~G~~s  214 (300)
                      |+|...
T Consensus       310 a~G~~p  315 (519)
T 3qfa_A          310 AIGRDA  315 (519)
T ss_dssp             CSCEEE
T ss_pred             ecCCcc
Confidence            999754

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.40  E-value=2.7e-07  Score=80.70  Aligned_cols=39  Identities=31%  Similarity=0.440  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+||+|||||++||++|+.|++.|.+|+|+|+++.++
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            356899999999999999999999999999999988764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.37  E-value=1.1e-06  Score=79.45  Aligned_cols=39  Identities=36%  Similarity=0.513  Sum_probs=35.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ....||+|||||++||++|+.|+++|++|+|+|+++.++
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g   69 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   69 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            346899999999999999999999999999999998764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.36  E-value=6e-07  Score=84.54  Aligned_cols=98  Identities=11%  Similarity=0.087  Sum_probs=70.5

Q ss_pred             CCCcEEEEC--CCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVG--AGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIG--gG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      ...+|+|||  ||..|+.+|..|++.|.+|+++++.+.+.....                                    
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~------------------------------------  565 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN------------------------------------  565 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG------------------------------------
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc------------------------------------
Confidence            346799999  999999999999999999999999876521100                                    


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE---cCCcEEEcCEEEEcCC
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL---VNGTRIYANIVIGCDG  211 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~~~~ad~vV~A~G  211 (300)
                                     .    ......+.+.|.+.  |++++++++|++++.+  ++. +..   .+++++.+|.||+|+|
T Consensus       566 ---------------~----~~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~--~~~-v~~~~~~~~~~i~aD~VV~A~G  621 (690)
T 3k30_A          566 ---------------N----TFEVNRIQRRLIEN--GVARVTDHAVVAVGAG--GVT-VRDTYASIERELECDAVVMVTA  621 (690)
T ss_dssp             ---------------G----GTCHHHHHHHHHHT--TCEEEESEEEEEEETT--EEE-EEETTTCCEEEEECSEEEEESC
T ss_pred             ---------------c----chhHHHHHHHHHHC--CCEEEcCcEEEEEECC--eEE-EEEccCCeEEEEECCEEEECCC
Confidence                           0    00122444555444  9999999999999743  322 332   2455799999999999


Q ss_pred             CCh
Q 022277          212 IRS  214 (300)
Q Consensus       212 ~~s  214 (300)
                      ...
T Consensus       622 ~~p  624 (690)
T 3k30_A          622 RLP  624 (690)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.33  E-value=3.4e-06  Score=71.30  Aligned_cols=37  Identities=24%  Similarity=0.554  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||..|+.+|..|++.|.+|+|+|+....
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            3468999999999999999999999999999987654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.33  E-value=5.6e-07  Score=81.16  Aligned_cols=55  Identities=16%  Similarity=0.338  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhcCCCCeEEeC--CeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          158 RRILLETLANQLPPESVQFS--SELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       158 ~~~l~~~l~~~~~g~~i~~~--~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      ...+.+.|++.+...+|+++  ++|++|+.++++   |.+.+|+++.||.||.|......
T Consensus       215 ~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~~---v~~~~G~~~~ad~VI~a~p~~~~  271 (484)
T 4dsg_A          215 TGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKT---ITFSNGEVVSYDYLISTVPFDNL  271 (484)
T ss_dssp             THHHHHHHHHHSCGGGEEECGGGCEEEEETTTTE---EEETTSCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHhhhhhCeEEECCCceeEEEEecCCE---EEECCCCEEECCEEEECCCHHHH
Confidence            45677777777743489999  469999987765   45688888999999999976553

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.32  E-value=4.8e-07  Score=78.65  Aligned_cols=36  Identities=36%  Similarity=0.557  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      +||+|||||++|+++|+.|++.|.+|+|+|+++.++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            699999999999999999999999999999988664

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.30  E-value=2.7e-06  Score=71.20  Aligned_cols=87  Identities=15%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||+|..|+.+|..|++.| +|+++++.+..                     +                     
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~---------------------~---------------------  176 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE---------------------P---------------------  176 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC---------------------C---------------------
T ss_pred             cCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC---------------------C---------------------
Confidence            3578999999999999999999999 99999877631                     0                     


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                           ...+.+.|.+.  |++++. ++|++++.++    .|.+.+|+++.+|.||.|+|...
T Consensus       177 ---------------------~~~~~~~l~~~--gv~i~~-~~v~~i~~~~----~v~~~~g~~~~~D~vi~a~G~~p  226 (297)
T 3fbs_A          177 ---------------------DADQHALLAAR--GVRVET-TRIREIAGHA----DVVLADGRSIALAGLFTQPKLRI  226 (297)
T ss_dssp             ---------------------CHHHHHHHHHT--TCEEEC-SCEEEEETTE----EEEETTSCEEEESEEEECCEEEC
T ss_pred             ---------------------CHHHHHHHHHC--CcEEEc-ceeeeeecCC----eEEeCCCCEEEEEEEEEccCccc
Confidence                                 01223333333  888885 8899886533    48889999999999999999753

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.30  E-value=2.1e-06  Score=78.37  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|+|++|.+.
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            457899999999999999999999999999999986

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.29  E-value=7.2e-07  Score=78.00  Aligned_cols=37  Identities=32%  Similarity=0.515  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .+||+|||||++|+++|+.|++.|++|+|+|+++.++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            4799999999999999999999999999999988764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.27  E-value=2.7e-06  Score=82.93  Aligned_cols=90  Identities=14%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||+|..|+.+|..|++.|.+|+|+|+.+.+..                                          
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~------------------------------------------  321 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA------------------------------------------  321 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH------------------------------------------
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch------------------------------------------
Confidence            36899999999999999999999999999999875410                                          


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEc-CCceEEEEEcC-------C--cEEEcCEEE
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETS-GNGVTILELVN-------G--TRIYANIVI  207 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~-------g--~~~~ad~vV  207 (300)
                                            . .+.+.+.  |+++++++.|++++.+ ++++..|.+.+       |  +++.+|.||
T Consensus       322 ----------------------~-~~~l~~~--GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv  376 (965)
T 2gag_A          322 ----------------------A-AAQAVAD--GVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLA  376 (965)
T ss_dssp             ----------------------H-HHHHHHT--TCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEE
T ss_pred             ----------------------h-HHHHHhC--CeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEE
Confidence                                  0 1222222  8999999999999874 45444566553       4  579999999


Q ss_pred             EcCCCCh
Q 022277          208 GCDGIRS  214 (300)
Q Consensus       208 ~A~G~~s  214 (300)
                      +|+|...
T Consensus       377 ~a~G~~P  383 (965)
T 2gag_A          377 VAGGFNP  383 (965)
T ss_dssp             EECCEEE
T ss_pred             ECCCcCc
Confidence            9999754

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.25  E-value=1.3e-06  Score=77.52  Aligned_cols=55  Identities=11%  Similarity=0.003  Sum_probs=42.6

Q ss_pred             HHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          160 ILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       160 ~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                      .+.+.|.+.+  .|++|+++++|++|..++++++.|. .+|+++.||.||.|+|.++.
T Consensus       235 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          235 ELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             HHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            4455554443  3789999999999998877766555 46778999999999999874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.19  E-value=1.7e-06  Score=79.13  Aligned_cols=37  Identities=11%  Similarity=0.212  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||+|.+|+.+|..|++.+.+|+|++|.+..
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            3578999999999999999999999999999999863

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.18  E-value=1.1e-05  Score=72.27  Aligned_cols=37  Identities=11%  Similarity=0.214  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||||.+|+.+|..|++.|.+|+++++.+.+
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            3578999999999999999999999999999988754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.15  E-value=6e-06  Score=73.60  Aligned_cols=36  Identities=11%  Similarity=0.063  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~   92 (300)
                      ...+|+|||||.+|+.+|..|++.|.+ |+++++.+.
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            357899999999999999999999999 999998763

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.11  E-value=2e-06  Score=79.76  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+..+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            46899999999999999999999999999999988653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.11  E-value=2.3e-05  Score=76.95  Aligned_cols=34  Identities=21%  Similarity=0.391  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||||..|+.+|..+.+.|. +|+|+++.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3489999999999999999999997 899999886

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.06  E-value=5.6e-06  Score=75.73  Aligned_cols=36  Identities=11%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||+|.+|+.+|..|++.|.+|+|++|.+.
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            357899999999999999999999999999999986

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.06  E-value=5.5e-06  Score=78.41  Aligned_cols=35  Identities=14%  Similarity=0.147  Sum_probs=32.5

Q ss_pred             CCCcEEEEC--CCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVG--AGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIG--gG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||  ||..|+.+|..|++.|.+|+|+++.+
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            346899999  99999999999999999999999987

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.05  E-value=1.1e-05  Score=71.98  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~   93 (300)
                      ...+|+|||||.+|+.+|..+.+.|.+ |+++++.+..
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            457899999999999999999999984 9999988753

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.05  E-value=4.3e-06  Score=78.27  Aligned_cols=38  Identities=32%  Similarity=0.672  Sum_probs=35.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..+||+|||||++||++|+.|++.|++|+|+|+.+.++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  143 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            45899999999999999999999999999999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.05  E-value=4.1e-05  Score=64.60  Aligned_cols=36  Identities=14%  Similarity=0.373  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            468999999999999999999999999999998865

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.04  E-value=4.8e-06  Score=79.60  Aligned_cols=38  Identities=32%  Similarity=0.672  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+|+|||||++||++|+.|+++|++|+|+|+.+.++
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  314 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence            45799999999999999999999999999999998764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.02  E-value=2.6e-05  Score=73.12  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             HHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCCh
Q 022277          161 LLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIRS  214 (300)
Q Consensus       161 l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~s  214 (300)
                      +.+.|.+.  |++++++++|++++  +++ +.+. .+|  +++.+|.||.|+|...
T Consensus       579 ~~~~l~~~--GV~v~~~~~v~~i~--~~~-v~~~-~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          579 HRTTLLSR--GVKMIPGVSYQKID--DDG-LHVV-INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHT--TCEEECSCEEEEEE--TTE-EEEE-ETTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHhc--CCEEEeCcEEEEEe--CCe-EEEe-cCCeEEEEeCCEEEECCCccc
Confidence            34444444  99999999999987  344 2233 566  5799999999999765

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.00  E-value=4.5e-06  Score=76.43  Aligned_cols=36  Identities=33%  Similarity=0.496  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|++|||||++|+.+|..|++.|++|+|+|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            568999999999999999999999999999999864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.98  E-value=4e-06  Score=76.37  Aligned_cols=36  Identities=39%  Similarity=0.466  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~~~~   92 (300)
                      ..+|+||||||.+|+.+|..|++ .|++|+|||+.+.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            47999999999999999999998 6899999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.96  E-value=4.7e-05  Score=68.04  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHH--------------------HcCC-cEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQ--------------------RLGI-GSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~--------------------~~G~-~V~viE~~~~~   93 (300)
                      ..+|+|||||..|+.+|..|+                    +.|. +|+|++|....
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            578999999999999999999                    5788 69999998754

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.82  E-value=1.2e-05  Score=73.90  Aligned_cols=36  Identities=33%  Similarity=0.398  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~   92 (300)
                      ..+|+||||||.+||.+|..|++.| .+|+|||+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4699999999999999999999997 79999999876

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.82  E-value=6.8e-05  Score=66.92  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--------------------CC-cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--------------------GI-GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--------------------G~-~V~viE~~~~~   93 (300)
                      ...+|+|||+|.+|+.+|..|++.                    |. +|+|+++....
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            356899999999999999999974                    65 89999998754

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.82  E-value=8.5e-06  Score=74.33  Aligned_cols=36  Identities=33%  Similarity=0.428  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|+||||||.+|+.+|..|++ |.+|+|||+.+..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            46899999999999999999999 9999999998653

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.80  E-value=9.3e-06  Score=75.82  Aligned_cols=36  Identities=36%  Similarity=0.517  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC--------CcEEEEecCC-Cc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLG--------IGSLVIEQAD-SL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G--------~~V~viE~~~-~~   93 (300)
                      ..+|+|||||++||++|+.|++.|        ++|+|+|+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            478999999999999999999998        9999999998 76

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.79  E-value=0.00011  Score=61.70  Aligned_cols=100  Identities=13%  Similarity=0.211  Sum_probs=67.5

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           57 RKEDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        57 ~~~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ...+++|||||. +++.+|..+.+.|.+|+++++.+...                                         
T Consensus       145 ~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~-----------------------------------------  183 (304)
T 4fk1_A          145 KDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS-----------------------------------------  183 (304)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC-----------------------------------------
T ss_pred             cCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch-----------------------------------------
Confidence            345788888775 56889998888999999998766431                                         


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~  215 (300)
                                             ..+.+.|.+.  ++.++.+ .++.+..+++.+..|.+++|+++.+|.+|++.|...+
T Consensus       184 -----------------------~~~~~~l~~~--g~~~~~~-~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~  237 (304)
T 4fk1_A          184 -----------------------QTIMDELSNK--NIPVITE-SIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRP  237 (304)
T ss_dssp             -----------------------HHHHHHHHTT--TCCEECS-CEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECS
T ss_pred             -----------------------hhhhhhhhcc--ceeEeee-eEEEeecCCCeeeeeeccccceeeecceeeeeccccC
Confidence                                   0222333332  6777765 4777766655556689999999999988888775432


Q ss_pred             --hhhhcCCC
Q 022277          216 --IAKWIGFS  223 (300)
Q Consensus       216 --~r~~~g~~  223 (300)
                        ..+.+|+.
T Consensus       238 ~~~~~~~g~~  247 (304)
T 4fk1_A          238 NQFIEQLGCE  247 (304)
T ss_dssp             SCHHHHTTCC
T ss_pred             ChhhhhcCeE
Confidence              33444554

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.72  E-value=2.8e-05  Score=70.43  Aligned_cols=36  Identities=22%  Similarity=0.411  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|++|||+|++|+.+|..|++.|.+|+|+|+...
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            468999999999999999999999999999999874

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.71  E-value=0.00014  Score=63.86  Aligned_cols=39  Identities=15%  Similarity=0.097  Sum_probs=33.4

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      |++++++++|++++.  ++   |.+.+|+++++|.||.|+|...
T Consensus       232 gV~~~~~~~v~~i~~--~~---v~~~~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          232 GIKLVHNFKIKEIRE--HE---IVDEKGNTIPADITILLPPYTG  270 (409)
T ss_dssp             TCEEECSCCEEEECS--SE---EEETTSCEEECSEEEEECCEEC
T ss_pred             CCEEEcCCceEEECC--Ce---EEECCCCEEeeeEEEECCCCCc
Confidence            899999999999864  33   7788999999999999999754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.68  E-value=4.9e-05  Score=65.09  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||+|..|+.+|..|++.| +|+++.+..
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            3478999999999999999999998 799999874

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.66  E-value=3.8e-05  Score=69.53  Aligned_cols=36  Identities=25%  Similarity=0.516  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|++|||+|++|+.+|..|++.|.+|+|+|+...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            468999999999999999999999999999999863

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.63  E-value=2.1e-05  Score=72.05  Aligned_cols=36  Identities=39%  Similarity=0.425  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~~~~~   93 (300)
                      .+|+||||||.+|+.+|..|++ .|.+|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999998 69999999998643

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.63  E-value=5.1e-05  Score=69.96  Aligned_cols=37  Identities=35%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~~~~~   93 (300)
                      ..+|++|||+|++|+.+|..|++ .|.+|+|+|+....
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            56999999999999999999999 79999999998643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.61  E-value=0.00012  Score=67.47  Aligned_cols=56  Identities=18%  Similarity=0.250  Sum_probs=43.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDAL  113 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~  113 (300)
                      +.+||+|||+|+.|..+|..|++.|.+|+++||++..+.......+ ....+++++.
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l-~~l~~w~~~~   62 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSF-SGLLSWLKEY   62 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH-HHHHHHHHHT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccH-HHHHHHHHHh
Confidence            4799999999999999999999999999999999988543333332 2334444444

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.57  E-value=4.5e-05  Score=69.68  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~~   93 (300)
                      ..+|++|||+|++|+.+|..|++. |.+|+|+|+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            468999999999999999999998 9999999998643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.50  E-value=0.00025  Score=62.85  Aligned_cols=48  Identities=13%  Similarity=0.104  Sum_probs=32.9

Q ss_pred             HHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE--cC-----CcEEEcCEEEEcCCC
Q 022277          160 ILLETLANQLPPESVQFSSELAKIETSGNGVTILEL--VN-----GTRIYANIVIGCDGI  212 (300)
Q Consensus       160 ~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~--~~-----g~~~~ad~vV~A~G~  212 (300)
                      .+.+.|.+.  |++++++++|++++.  +++. +..  .+     ++++.+|.|+.|.|.
T Consensus       213 ~~~~~l~~~--gI~~~~~~~v~~v~~--~~v~-~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          213 ILTKGLKEE--GIEAYTNCKVTKVED--NKMY-VTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHT--TCEEECSEEEEEEET--TEEE-EEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHC--CCEEEcCCEEEEEEC--CeEE-EEecccCCccccceEEEEeEEEEcCCC
Confidence            444555444  999999999999864  3322 222  23     457899999999884

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.42  E-value=0.00067  Score=61.90  Aligned_cols=37  Identities=11%  Similarity=0.359  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||+|..|+.+|..|++.|.+|++++|.+..
T Consensus       185 ~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            3578999999999999999999999999999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.29  E-value=0.00032  Score=51.78  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            456899999999999999999999999999999874

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.19  E-value=0.00046  Score=51.85  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||+|..|..+|..|.+.|.+|+++|+++.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            456899999999999999999999999999998764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.13  E-value=0.002  Score=58.22  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~   93 (300)
                      ...+|+|||+|.+|..++..|++.  +.+|+++-|.+..
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            456899999999999999999875  6799999998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.09  E-value=0.00059  Score=50.27  Aligned_cols=35  Identities=17%  Similarity=0.415  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            35899999999999999999999999999998763

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.05  E-value=0.00095  Score=49.94  Aligned_cols=35  Identities=26%  Similarity=0.450  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            35689999999999999999999999999999974

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.95  E-value=0.00095  Score=48.79  Aligned_cols=33  Identities=30%  Similarity=0.396  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999865

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.86  E-value=0.01  Score=51.73  Aligned_cols=43  Identities=16%  Similarity=0.091  Sum_probs=36.9

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      +++++.+++++.++.+.+... |.+.+|+++.+|.|+.|.|...
T Consensus       216 gi~v~~~~~v~~v~~~~~~~~-v~~~~g~~i~~D~vi~~~g~~~  258 (401)
T 3vrd_B          216 LIEWHPGPDAAVVKTDTEAMT-VETSFGETFKAAVINLIPPQRA  258 (401)
T ss_dssp             SEEEECTTTTCEEEEETTTTE-EEETTSCEEECSEEEECCCEEE
T ss_pred             CcEEEeCceEEEEEecccceE-EEcCCCcEEEeeEEEEecCcCC
Confidence            789999999999988766534 8899999999999999999653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.83  E-value=0.0012  Score=46.59  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~   91 (300)
                      ..+|+|+|+|..|..++..|.+.| .+|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            458999999999999999999999 8999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.59  E-value=0.0026  Score=46.62  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|+|+|+|..|..+|..|.+.|.+|+++|++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.57  E-value=0.0022  Score=49.46  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL-GIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~-G~~V~viE~~~~   92 (300)
                      ..+|+|||+|..|..+|..|.+. |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            45899999999999999999999 999999998763

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.56  E-value=0.0026  Score=53.38  Aligned_cols=35  Identities=17%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35799999999999999999999999999998763

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.54  E-value=0.0021  Score=54.19  Aligned_cols=36  Identities=22%  Similarity=0.353  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||+|..|...|..++..|++|+++|.++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            346899999999999999999999999999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.49  E-value=0.0081  Score=54.03  Aligned_cols=52  Identities=15%  Similarity=0.075  Sum_probs=40.8

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH--hhhhcCCC
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP--IAKWIGFS  223 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~--~r~~~g~~  223 (300)
                      |++++++++|++++.++ ++..|.+.+|+++.+|.||.|+|..+.  +.+.+|+.
T Consensus       271 GV~v~~~~~v~~i~~~~-~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~  324 (493)
T 1y56_A          271 GIDYVHIPNVKRVEGNE-KVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGK  324 (493)
T ss_dssp             TCEEEECSSEEEEECSS-SCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             CcEEEeCCeeEEEecCC-ceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCC
Confidence            78999999999998654 345577888889999999999998653  45555654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.48  E-value=0.027  Score=49.59  Aligned_cols=48  Identities=17%  Similarity=0.160  Sum_probs=34.0

Q ss_pred             HHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCCCC
Q 022277          161 LLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDGIR  213 (300)
Q Consensus       161 l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G~~  213 (300)
                      +.+.|.+.  |+++++++.|++++  ++++. +...+|  +++.+|.||.|.|..
T Consensus       206 l~~~l~~~--GV~~~~~~~v~~v~--~~~~~-~~~~~g~~~~i~~d~vi~~~G~~  255 (430)
T 3hyw_A          206 VEDLFAER--NIDWIANVAVKAIE--PDKVI-YEDLNGNTHEVPAKFTMFMPSFQ  255 (430)
T ss_dssp             HHHHHHHT--TCEEECSCEEEEEC--SSEEE-EECTTSCEEEEECSEEEEECEEE
T ss_pred             HHHHHHhC--CeEEEeCceEEEEe--CCceE-EEeeCCCceEeecceEEEeccCC
Confidence            34444444  99999999999885  34422 444444  479999999999964

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.38  E-value=0.0027  Score=50.50  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999998764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.30  E-value=0.0044  Score=52.70  Aligned_cols=36  Identities=11%  Similarity=0.312  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ...+|+|||||..|..+|..|+..|+ +|+++|++..
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            34689999999999999999999998 9999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.29  E-value=0.0048  Score=51.23  Aligned_cols=35  Identities=14%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.29  E-value=0.0042  Score=52.57  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|+|||+|..|...|..|++.|.+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            589999999999999999999999999999865

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.14  E-value=0.0047  Score=52.03  Aligned_cols=33  Identities=39%  Similarity=0.436  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|.|||+|..|.+.|..|++.|.+|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            579999999999999999999999999999865

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.06  E-value=0.0071  Score=51.49  Aligned_cols=33  Identities=30%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ..+|.|||+|..|...|..|++.|.+|++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            358999999999999999999999999999985

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.01  E-value=0.0075  Score=52.37  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||+|.+|+.+|..|...|.+|+++|+.+..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~  225 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAA  225 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            3579999999999999999999999999999998753

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.00  E-value=0.0077  Score=51.71  Aligned_cols=36  Identities=33%  Similarity=0.332  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||+|..|.++|..|++.|++|+++++++.
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            456899999999999999999999999999998753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.99  E-value=0.0078  Score=47.89  Aligned_cols=35  Identities=14%  Similarity=0.276  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|||||-+|...+..|.+.|.+|+|+++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45799999999999999999999999999999754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.97  E-value=0.008  Score=50.62  Aligned_cols=36  Identities=19%  Similarity=0.534  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      +...+|.|||+|..|..+|+.|+..|+ +|+++|..+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            345789999999999999999999999 999999873

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.95  E-value=0.0066  Score=50.64  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|+|||+|..|.+.|..|++.|.+|++++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            589999999999999999999999999999874

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.94  E-value=0.009  Score=47.15  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|.+.|..|++.|.+|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998865

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.92  E-value=0.0072  Score=54.06  Aligned_cols=36  Identities=22%  Similarity=0.494  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||+|..|+.+|..|++.|++|+++|++..
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            357899999999999999999999999999998753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.90  E-value=0.0076  Score=53.46  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|+.+|..|++.|++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            4799999999999999999999999999999863

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.89  E-value=0.0086  Score=52.98  Aligned_cols=37  Identities=16%  Similarity=0.410  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...++.|||.|..|+.+|..|++.|++|+++|+++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3578999999999999999999999999999998753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.87  E-value=0.009  Score=49.47  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||+|..|...|..|++.|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            689999999999999999999999999998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.86  E-value=0.0082  Score=50.37  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|.|||+|..|...|..|++.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.84  E-value=0.0081  Score=51.69  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||+|.+|+.+|..|...|.+|+++|+++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            356899999999999999999999999999999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.82  E-value=0.0088  Score=52.65  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||.|.+||.+|..|++.|++|+.+|-+..
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            457899999999999999999999999999998763

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.79  E-value=0.01  Score=52.54  Aligned_cols=36  Identities=22%  Similarity=0.482  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            346899999999999999999999999999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.78  E-value=0.0097  Score=50.19  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ..+|+|||+|..|..+|..|++.|+  +|+++|++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3589999999999999999999999  999999875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.75  E-value=0.01  Score=49.70  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||.|..|...|..|.+.|++|+++++++.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            346899999999999999999999999999998763

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.73  E-value=0.0098  Score=53.02  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL-GI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~-G~-~V~viE~~~~   92 (300)
                      ...+|.|||+|..|+.+|..|++. |+ +|+++|+++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            346899999999999999999999 99 9999999876

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.71  E-value=0.0069  Score=49.78  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|||||-+|...+..|.+.|.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            35789999999999999999999999999999765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.71  E-value=0.01  Score=52.76  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||.|.+|+++|..|.++|++|++.|++.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35789999999999999999999999999999865

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.70  E-value=0.0088  Score=52.96  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|+|||.|.+|+++|..|+++|++|+++|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            357999999999999999999999999999987654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.70  E-value=0.012  Score=49.42  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|.|||.|..|..+|..|.+.|++|+++++++..
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   56 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSK   56 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            3468999999999999999999999999999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.70  E-value=0.0099  Score=48.31  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4689999999999999999999998 899999876

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.68  E-value=0.013  Score=49.68  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..+|.|||||..|..+|..|+..|+ +|+++|.+..
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            3589999999999999999999999 9999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.66  E-value=0.013  Score=49.51  Aligned_cols=35  Identities=17%  Similarity=0.373  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..+|.|||+|..|..+|..|++.|+ +|+++|++..
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            3589999999999999999999998 9999998764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.64  E-value=0.011  Score=50.54  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|.|||+|..|...|..|++.|++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3589999999999999999999999999999875

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.60  E-value=0.012  Score=51.63  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...|+|||.|..|..+|..|.+.|++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            45799999999999999999999999999999864

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.59  E-value=0.0081  Score=50.50  Aligned_cols=32  Identities=22%  Similarity=0.181  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc-----C-CcEEEEec
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL-----G-IGSLVIEQ   89 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~-----G-~~V~viE~   89 (300)
                      +.+|.|||+|..|...|..|++.     | .+|++++|
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            35899999999999999999999     9 99999998

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.59  E-value=0.01  Score=49.35  Aligned_cols=35  Identities=14%  Similarity=0.381  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+..|.|||+|..|...|..|+ .|++|+++|+++.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            4689999999999999999999 9999999998864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.56  E-value=0.013  Score=49.79  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ++.+|.|||+|..|...|..|++.|++|++++|.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            56899999999999999999999999999999875

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.51  E-value=0.014  Score=52.00  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            45799999999999999999999999999998763

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.45  E-value=0.019  Score=45.44  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|.|||+|..|...|..|.+.|++|++++|+.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999875

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.45  E-value=0.014  Score=48.95  Aligned_cols=32  Identities=31%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|+|||+|..|...|..|+ .|.+|++++|..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            58999999999999999999 999999999875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.45  E-value=0.017  Score=51.74  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|++.|++|+++|++..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            45899999999999999999999999999998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.44  E-value=0.012  Score=49.09  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|.|||.|..|...|..|++.|++|+++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            468999999999999999999999999999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.40  E-value=0.02  Score=48.39  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..+|+|||+|..|..+|..|+..|+ +|.++|.+..
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            3589999999999999999999998 9999998764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.40  E-value=0.016  Score=49.90  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      .+.+|+|+|||.+|+.+|..|...|. +|+++|+..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            46899999999999999999999999 999999985

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.37  E-value=0.017  Score=50.48  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|+|||+|.+|+.+|..+...|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            56899999999999999999999999999998864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.33  E-value=0.021  Score=48.22  Aligned_cols=36  Identities=17%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ...+|.|||+|..|.++|+.|+..|+ +|+++|....
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            45689999999999999999999999 9999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.33  E-value=0.018  Score=47.78  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|.|||.|..|...|..|.+.|++|+++++++..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~   36 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEK   36 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence            47999999999999999999999999999998753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.32  E-value=0.016  Score=50.96  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||.|..|+.+|..|++ |++|+++|+++.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            34689999999999999999998 999999998864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.32  E-value=0.0063  Score=54.19  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|+|+|+|-.|..+|..|...|++|+|+|+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999853

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.32  E-value=0.018  Score=48.33  Aligned_cols=32  Identities=22%  Similarity=0.462  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      +|+|||+|..|..+|+.|+..|+  +|+++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999999  999999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.31  E-value=0.0067  Score=44.70  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|+|||+|..|..+|..|.+.|.+|+++++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            6789999999999999999999999999999876

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.30  E-value=0.014  Score=51.68  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||+|..|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~   34 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            689999999999999999999999999998753

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.26  E-value=0.021  Score=46.18  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||+|..|..+|..|.+.|++|+++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            457899999999999999999999999999998764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.26  E-value=0.024  Score=47.56  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||.|..|...|..|.+.|++|+++++++.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            356899999999999999999999999999998864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.25  E-value=0.02  Score=49.63  Aligned_cols=36  Identities=22%  Similarity=0.474  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|+|+|.+|+.++..+...|.+|+++|+.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357899999999999999999999999999998864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.24  E-value=0.021  Score=48.20  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      .+.+|+|||+|.+|..+|+.|+..|+  ++.++|.+..
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~   43 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   43 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChH
Confidence            35799999999999999999999998  8999998753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.24  E-value=0.019  Score=48.47  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|.|||+|..|...|..|++.|.+|+++ +++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            3468999999999999999999999999999 654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.23  E-value=0.025  Score=47.55  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|.+.|++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.18  E-value=0.021  Score=48.27  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ...+|.|||+|..|.++|+.|+..|+  +++++|.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            35689999999999999999999998  899999864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.18  E-value=0.018  Score=47.80  Aligned_cols=35  Identities=37%  Similarity=0.467  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            45799999999999999999999998 899999776

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.14  E-value=0.013  Score=46.59  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEE-EecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLV-IEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~v-iE~~~~   92 (300)
                      ..+|.|||+|..|.+.|..|.+.|++|++ ++|++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            46899999999999999999999999999 888764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.10  E-value=0.018  Score=47.69  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|.|||.|..|...|..|.+.|++|+++++++..
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~   36 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAK   36 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence            37999999999999999999999999999998753

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=95.08  E-value=0.015  Score=51.28  Aligned_cols=38  Identities=13%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..+||+|||||++|+++|..|++.|++|+|+|+++.++
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            46899999999999999999999999999999998764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.06  E-value=0.022  Score=48.96  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|+|+|+|.+|..++..|...|.+|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999876

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.06  E-value=0.023  Score=48.82  Aligned_cols=36  Identities=22%  Similarity=0.465  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      -.+.+|+|+|||.+|..+|..|...|. +|+++|+..
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            356899999999999999999999999 799999984

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.05  E-value=0.033  Score=45.92  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|+|.|+|..|..++..|.++|++|+++.|...
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            35799999999999999999999999999999754

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.04  E-value=0.03  Score=47.21  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ...+|.|||+|..|.++|+.|+..|+ ++.++|....
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            34689999999999999999999988 9999998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.03  E-value=0.028  Score=47.20  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      .+|+|||+|..|..+|+.|+..|+ +|.++|.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~   37 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   37 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCcc
Confidence            579999999999999999999997 9999998753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.01  E-value=0.026  Score=47.77  Aligned_cols=34  Identities=18%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            5799999999999999999999998 799999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.00  E-value=0.023  Score=47.97  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||.|..|..+|..|.+.|++|+++++++.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            346899999999999999999999999999998864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.99  E-value=0.028  Score=48.26  Aligned_cols=34  Identities=18%  Similarity=0.456  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|+|+|||.-|..+++.+.+.|++|+++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5799999999999999999999999999998764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.98  E-value=0.028  Score=47.25  Aligned_cols=33  Identities=24%  Similarity=0.430  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~   92 (300)
                      +|+|||+|..|..+|..|++.  |.+|+++|++..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            689999999999999999985  789999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.91  E-value=0.035  Score=47.28  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||.|..|.+.|..|.+.|++|+++++++.
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~   42 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRS   42 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998763

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.90  E-value=0.024  Score=46.69  Aligned_cols=35  Identities=11%  Similarity=0.147  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|+|.|||..|..++..|.++|++|+++.|.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            36899999999999999999999999999998764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.90  E-value=0.023  Score=48.12  Aligned_cols=30  Identities=30%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      +|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.90  E-value=0.024  Score=47.71  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|.|||.|..|..+|..|.+.|+ +|++++++.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            4689999999999999999999999 999999963

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.88  E-value=0.03  Score=48.29  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...|+|+|+|.+|..+|..|...|.+|+++++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.88  E-value=0.06  Score=44.22  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....++|+|+|-+|.++|..|.+.|.+|+|++|..
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            35689999999999999999999999999998875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.87  E-value=0.025  Score=47.66  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~   91 (300)
                      ..+|.|||.|..|..+|..|++.| ++|+++++++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            468999999999999999999999 9999999986

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.86  E-value=0.035  Score=46.75  Aligned_cols=35  Identities=29%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      ..+|.|||.|..|.+.|..|.+.|+  +|+++|+++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            4689999999999999999999999  9999998763

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.85  E-value=0.03  Score=47.41  Aligned_cols=35  Identities=17%  Similarity=0.110  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHH-HHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLA-TAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~-~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||.|.+|++ +|..|.++|++|++.|+...
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            457999999999996 88999999999999998764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.80  E-value=0.02  Score=49.95  Aligned_cols=31  Identities=23%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||+|..|+.+|..|++ |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            68999999999999999999 99999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.78  E-value=0.031  Score=47.95  Aligned_cols=36  Identities=19%  Similarity=0.269  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||.|..|..+|..|.+.|++|+++++++.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998763

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.73  E-value=0.024  Score=50.77  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~   92 (300)
                      ..+|.|||.|..|+.+|..|++.  |++|+++|++..
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            35899999999999999999998  789999998753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.70  E-value=0.029  Score=45.54  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            35799999999999999999999998 789999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.68  E-value=0.036  Score=46.22  Aligned_cols=35  Identities=31%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.||| +|..|.+.|..|.+.|++|+++++++.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            35799999 999999999999999999999998753

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=94.67  E-value=0.038  Score=44.99  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC----CcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLG----IGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G----~~V~viE~~~~~   93 (300)
                      ..+|.|||+|..|...|..|.+.|    .+|+++++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            357999999999999999999999    699999988653

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.67  E-value=0.036  Score=47.90  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|||+|.+|..+|..+...|.+|+++|++..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~  202 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINID  202 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            356899999999999999999999999999998753

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.67  E-value=0.028  Score=46.82  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|.+.|++|.++++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.66  E-value=0.036  Score=43.55  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVG-AGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|+||| +|..|...|..|.+.|++|++++|+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999999999999875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.63  E-value=0.042  Score=45.47  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|.|||+ |..|...|..|.+.|++|+++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999 9999999999999999999999875

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.61  E-value=0.031  Score=47.16  Aligned_cols=32  Identities=34%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      +|.|||+|..|..+|..|++.|+  +|+++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            68999999999999999999999  999999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.60  E-value=0.035  Score=49.64  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+.+|.|||.|..|..+|..|++.|++|++++|.+.
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            457899999999999999999999999999998753

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.59  E-value=0.044  Score=44.87  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+++|+|+|-+|-++|+.|.+.|.+|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999998864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.57  E-value=0.043  Score=49.25  Aligned_cols=36  Identities=14%  Similarity=0.244  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +..+|.|||.|..|..+|..|++.|++|++++|.+.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457999999999999999999999999999999864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.56  E-value=0.05  Score=44.94  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI---GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~---~V~viE~~~~   92 (300)
                      ..+|.|||+|-.|.+.|..|.+.|+   +|+++++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            4689999999999999999999999   9999998874

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.55  E-value=0.044  Score=48.94  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||.|..|..+|..|++.|++|+++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999999874

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.50  E-value=0.041  Score=46.42  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC----CcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLG----IGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G----~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|.+.|    .+|++++|+..
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            457999999999999999999999    79999998763

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.49  E-value=0.016  Score=46.50  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|||+|..|..+|..|.+.|+ |+++|+++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            34689999999999999999999999 999998864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.47  E-value=0.03  Score=49.91  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~   92 (300)
                      .+|.|||.|..|+.+|..|++.  |++|+++|++..
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            5899999999999999999999  899999998753

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.46  E-value=0.041  Score=45.28  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||+|..|.+.|..|.+.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=94.46  E-value=0.039  Score=46.46  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ...+|+|||+|.+|..+|+.|...|+  ++.++|.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            45799999999999999999999886  899999764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.45  E-value=0.043  Score=51.69  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            5799999999999999999999999999998864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.43  E-value=0.035  Score=47.97  Aligned_cols=34  Identities=15%  Similarity=0.027  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-------CcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG-------IGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G-------~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|       .+|+++++.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999999       99999998865

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.42  E-value=0.031  Score=49.09  Aligned_cols=35  Identities=23%  Similarity=0.500  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+.-|||.|..|+.+|..|++.|++|+++|+++.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46789999999999999999999999999999874

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.42  E-value=0.012  Score=47.11  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ...+|.|||.|..|.++|..|.+.|++|+++++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            3458999999999999999999999999999874

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.39  E-value=0.021  Score=49.16  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||+|..|...|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999875

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.38  E-value=0.024  Score=48.47  Aligned_cols=34  Identities=21%  Similarity=0.151  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC-------CcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG-------IGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G-------~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|++.|       .+|+++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            57999999999999999999999       89999998875

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.34  E-value=0.043  Score=45.56  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||+|..|...|..|.+.|++|+++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            689999999999999999999999999998764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.34  E-value=0.041  Score=47.08  Aligned_cols=35  Identities=29%  Similarity=0.499  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            35799999999999999999999998 799999765

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.33  E-value=0.07  Score=43.95  Aligned_cols=36  Identities=28%  Similarity=0.226  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ...+++|+|+|-+|-++|..|.+.|. +|+|+.|...
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            35789999999999999999999999 8999998864

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.32  E-value=0.042  Score=45.96  Aligned_cols=35  Identities=23%  Similarity=0.518  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      ..+|.|||||..|..+|+.|...|+  +|.++|.+..
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            4689999999999999999999998  9999998764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.32  E-value=0.046  Score=45.57  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|.+|.++|..|.+.|. +|+|+.|..
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            35689999999999999999999998 899999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.32  E-value=0.039  Score=45.91  Aligned_cols=35  Identities=20%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|.+.|++|+++++++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   38 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEA   38 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35899999999999999999999999999998753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.27  E-value=0.053  Score=43.25  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|.|| |..|..++..|.++|++|+++.|+..
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            3568999998 99999999999999999999999764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.25  E-value=0.049  Score=45.83  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ...+|+|||+|..|.++|+.|...|+  +|.++|.+.
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            34689999999999999999998886  799999875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.25  E-value=0.049  Score=45.97  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ..+|.|||+|..|..+|+.|+..|+  ++.++|.+.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            4689999999999999999999998  899999865

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.25  E-value=0.044  Score=44.65  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~   91 (300)
                      +|.|||+|..|...|..|.+.| .+|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5899999999999999999999 9999999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=94.24  E-value=0.06  Score=43.46  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC----cEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI----GSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~----~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|.+.|+    +|.++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            579999999999999999999998    9999998763

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=94.21  E-value=0.039  Score=48.97  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|+|+|.+|..+|..|+..|.+|+++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35789999999999999999999999999999875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.20  E-value=0.064  Score=41.52  Aligned_cols=34  Identities=32%  Similarity=0.448  Sum_probs=31.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..|+|+|| |..|..++..|.++|.+|+++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            57999999 99999999999999999999999764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.19  E-value=0.061  Score=44.91  Aligned_cols=36  Identities=28%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +...|+|.|| |..|..++..|.+.|++|+++.|...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            3568999999 99999999999999999999998765

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.19  E-value=0.043  Score=46.03  Aligned_cols=33  Identities=30%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~   91 (300)
                      .+|.|||+|..|..+|..|++.|  .+|+++|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            37999999999999999999999  6899999875

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.17  E-value=0.045  Score=45.51  Aligned_cols=33  Identities=21%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      +|.|||+|..|.++|+.|+..|+  +|.++|+.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~   36 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChH
Confidence            69999999999999999999998  8999998763

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.16  E-value=0.061  Score=42.21  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|+|+|| |..|..++..|.++|++|+++.|++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG   35 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence            5899996 99999999999999999999999863

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=94.15  E-value=0.053  Score=44.68  Aligned_cols=33  Identities=30%  Similarity=0.429  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      .+|.|||+|..|.+.|..|.+.|+  +|+++++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            369999999999999999999998  899999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.14  E-value=0.078  Score=43.54  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....++|+|+|-+|.++|..|.+.|.+|+|+.|..
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34689999999999999999999999999999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=94.09  E-value=0.067  Score=45.50  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ...+|+|||+ |.+|..+|+.+...|+  +|+++|.+.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4568999998 9999999999999996  899999864

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=94.08  E-value=0.052  Score=49.48  Aligned_cols=34  Identities=18%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            5789999999999999999999998 799999876

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.08  E-value=0.054  Score=45.72  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ...+|+|||+|.+|.++|+.|...|+  ++.++|...
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            45689999999999999999999988  899999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=94.07  E-value=0.06  Score=48.20  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|..+|..|++.|++|+++++.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998763

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.06  E-value=0.051  Score=48.29  Aligned_cols=35  Identities=29%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|||||.+|...+..|.+.|.+|+|++...
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            35689999999999999999999999999999853

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.05  E-value=0.045  Score=46.72  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            46899999999999999999999999 799999765

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=94.03  E-value=0.048  Score=45.05  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||+|..|...|..|.+ |++|+++++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            69999999999999999999 999999998763

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.02  E-value=0.13  Score=43.25  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ....++|+|+|-+|-++|..|++.|. +|+|+.|..
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            45789999999999999999999999 899999884

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.01  E-value=0.038  Score=46.10  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|-+||-|..|..+|..|.+.|++|+++++++..
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~   40 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASK   40 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC------
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            357999999999999999999999999999988753

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.99  E-value=0.054  Score=45.49  Aligned_cols=33  Identities=21%  Similarity=0.480  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      +|.|||+|..|.++|+.|+..|+  +++++|....
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            68999999999999999999988  8999998764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.98  E-value=0.059  Score=43.97  Aligned_cols=33  Identities=30%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~   91 (300)
                      .+|.|||+|..|...|..|.+.|++ |.++++++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5799999999999999999999999 89999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=93.98  E-value=0.12  Score=42.69  Aligned_cols=35  Identities=31%  Similarity=0.383  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ....++|+|+|-+|.+++..|++.|. +|+|+.|..
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            45789999999999999999999999 699998875

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.95  E-value=0.054  Score=50.97  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            45799999999999999999999999999998864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.91  E-value=0.07  Score=44.50  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|.|||+|.+|..+|..|...|.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35689999999999999999999999999999875

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=93.90  E-value=0.077  Score=45.09  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|.+.|..|.+.|++|+++++...
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            5799999999999999999999999999998763

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.89  E-value=0.072  Score=45.07  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ...+|.|||+|..|.++|+.|...|+  ++.++|...
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            45789999999999999999999998  899999864

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=93.88  E-value=0.067  Score=47.06  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~   74 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   74 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            5799999999999999999999999 899999764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.88  E-value=0.072  Score=44.29  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|.|||+|.+|..+|..|...|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35689999999999999999999999999999875

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=93.86  E-value=0.056  Score=49.16  Aligned_cols=34  Identities=18%  Similarity=0.403  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~  361 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  361 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            5799999999999999999999999 799999764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.84  E-value=0.071  Score=41.96  Aligned_cols=33  Identities=30%  Similarity=0.437  Sum_probs=30.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|+|.|| |..|..++..|.++|++|+++.|+..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ   35 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            5999998 99999999999999999999998753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=93.82  E-value=0.076  Score=46.60  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....+|+|+|+|..|..++..+.+.|++|+++|..+.
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            3457899999999999999999999999999997643

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.82  E-value=0.069  Score=48.80  Aligned_cols=35  Identities=34%  Similarity=0.454  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+++|||+|-.|..+|..|.+.|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            78999999999999999999999999999999864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.81  E-value=0.035  Score=48.43  Aligned_cols=30  Identities=13%  Similarity=0.180  Sum_probs=28.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-cCCcEEEEe
Q 022277           59 EDIVIVGAGIAGLATAVSLQR-LGIGSLVIE   88 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE   88 (300)
                      .+|.|||+|..|...|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            479999999999999999998 599999999

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.80  E-value=0.079  Score=43.02  Aligned_cols=32  Identities=31%  Similarity=0.474  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      +++|||+|-+|-+++..|.+.|. +|+|++|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            89999999999999999999999 899999875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.78  E-value=0.061  Score=44.29  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..+|+|||+|-+|.++|..|.+.|.+|++++|..
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4689999999999999999999999999999875

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.76  E-value=0.077  Score=47.37  Aligned_cols=35  Identities=17%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|..|++.|++|+++++.+.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~   39 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTS   39 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            36899999999999999999999999999998753

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=93.75  E-value=0.056  Score=47.14  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|||.|.+|..+|..|...|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            45789999999999999999999999999999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=93.71  E-value=0.082  Score=43.79  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|+|.|| |..|-.++..|.++|++|+++-|++.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6999998 99999999999999999999988764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.66  E-value=0.071  Score=47.63  Aligned_cols=32  Identities=25%  Similarity=0.460  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||+|..|...|..|++.|++|++++|++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            79999999999999999999999999999875

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=93.63  E-value=0.1  Score=43.20  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....++|+|+|-+|.++|..|++.| +|++++|..
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            3468999999999999999999999 999998864

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=93.62  E-value=0.14  Score=42.26  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+++|+|+|-+|-++++.|.+.|. +|+|+.|..
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            45789999999999999999999998 899999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.55  E-value=0.14  Score=43.61  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....|+|+|+|..|+.++..+...|.+|+++++++.-
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~  212 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHK  212 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            4568999999999999988888889999999987653

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=93.55  E-value=0.16  Score=41.86  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ....++|+|+|-+|-+++..|.+.|. +|+|+.|..
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            45789999999999999999999997 899999875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=93.53  E-value=0.11  Score=40.85  Aligned_cols=34  Identities=18%  Similarity=0.146  Sum_probs=30.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHH-HcCCcEEEEecCCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQ-RLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~-~~G~~V~viE~~~~   92 (300)
                      ..|+|.|| |..|..++..|. +.|++|+++.|+..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            45999995 999999999999 89999999998764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=93.46  E-value=0.062  Score=48.03  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|||+|..|..+|..|...|.+|+++|+.+.
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~  308 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPI  308 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457899999999999999999999999999998763

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=93.42  E-value=0.099  Score=44.27  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|.|| |..|..++..|.+.|++|+++.|...
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            4578999998 99999999999999999999998764

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=93.39  E-value=0.18  Score=42.17  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+++|+|+|-+|-++++.|.+.|. +|+|+.|..
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            45789999999999999999999999 799999884

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=93.35  E-value=0.098  Score=42.66  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +++|||+|-+|.+.|..|.+.|.+|++++|..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            89999999999999999999999999999875

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.32  E-value=0.072  Score=42.09  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|+|.|| |..|..++..|.++|++|+++.|.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK   40 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCccc
Confidence            57999996 999999999999999999999998653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=93.31  E-value=0.1  Score=42.81  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ....++|+|+|-+|-++|..|.+.|. +|+|+.|..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            45789999999999999999999997 899998875

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=93.31  E-value=0.078  Score=45.74  Aligned_cols=35  Identities=31%  Similarity=0.528  Sum_probs=32.6

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC---cEEEEecCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGI---GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~---~V~viE~~~   91 (300)
                      ...+|+|||| |.+|+.++..+...|.   +|+++|.+.
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            4689999999 9999999999999998   999999876

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=93.31  E-value=0.073  Score=50.12  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|.|||+|..|...|+.++..|++|+++|.++.
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            36899999999999999999999999999998764

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=93.27  E-value=0.12  Score=44.67  Aligned_cols=36  Identities=28%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|||+|..|..++..+.+.|++|++++..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            456899999999999999999999999999998654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=93.27  E-value=0.075  Score=43.15  Aligned_cols=34  Identities=18%  Similarity=0.146  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|.+.|.+|.++++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~   37 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   37 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHH
Confidence            4799999999999999999999999999998753

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=93.16  E-value=0.091  Score=43.44  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~   91 (300)
                      ..+|.|||+|..|.+.|..|.+.  |.+|+++++++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            45799999999999999999988  67999999875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.16  E-value=0.12  Score=44.78  Aligned_cols=36  Identities=22%  Similarity=0.390  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|||+|..|..++..+.+.|++|++++..+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            346899999999999999999999999999997653

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=93.10  E-value=0.11  Score=44.78  Aligned_cols=37  Identities=19%  Similarity=0.119  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+++|+|||..|..+|..++..|++|+|+|.++..
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~  239 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF  239 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh
Confidence            4679999999999999999999999999999988754

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=93.09  E-value=0.08  Score=43.08  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      +|.|||+|..|...|..|.+.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            589999999999999999999999999876

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=93.09  E-value=0.11  Score=43.61  Aligned_cols=33  Identities=42%  Similarity=0.543  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      +|.|||+|..|..+|+.|+..|+ ++.++|.+..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~   34 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPG   34 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChh
Confidence            58999999999999999999898 6999998754

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.08  E-value=0.22  Score=41.13  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....++|+| +|.+|.++|..|.+.|.+|+++.|..
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            346899999 89999999999999999999999864

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=93.07  E-value=0.084  Score=48.56  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|+.+|..|++.|+ +++|+|...
T Consensus        17 ~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~   51 (640)
T 1y8q_B           17 GGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT   51 (640)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred             cCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            4799999999999999999999999 899999775

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.06  E-value=0.2  Score=43.92  Aligned_cols=34  Identities=32%  Similarity=0.509  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC---cEEEEe----cC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI---GSLVIE----QA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~---~V~viE----~~   90 (300)
                      ...+|+|+|+|-+|.++|..|.+.|.   +|+|++    |.
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~  225 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKP  225 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCc
Confidence            45789999999999999999999998   799999    76

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.01  E-value=0.14  Score=44.19  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ....|+|+|+|..|+.++..+...|. +|+++++++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~  229 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSK  229 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            45689999999999999888888899 8999997764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.01  E-value=0.13  Score=43.70  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...|+|.|| |..|..++..|.+.|++|+++.|..
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            468999999 9999999999999999999999976

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=92.99  E-value=0.1  Score=45.60  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ....|+|||+|.+|..+|..|...|. +|+++++..
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            45789999999999999999999999 899999875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.98  E-value=0.061  Score=44.55  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||+|..|...|..|.+.|++|++++ ++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            479999999999999999999999999998 553

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.95  E-value=0.11  Score=43.64  Aligned_cols=35  Identities=23%  Similarity=0.521  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      +..+|+|||+|.+|.++|+.|...++  ++.++|.+.
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            34789999999999999999999887  899999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-20
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-19
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	9e-18
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	3e-15
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	5e-09
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-08
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-08
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	3e-08
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	8e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	9e-08
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-07
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-07
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-07
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	2e-07
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-07
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	3e-07
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	4e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	6e-07
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	7e-07
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	8e-07
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	8e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	9e-07
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	1e-06
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	4e-06
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	4e-06
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	9e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-05
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	4e-05
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	4e-05
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	4e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	5e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	9e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	2e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	3e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	4e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	5e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	5e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	6e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	6e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	7e-04
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	7e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	8e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.001
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.002
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.002
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	0.002
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	0.002
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.002
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.004
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	0.004
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.004
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.004

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 86.5 bits (213), Expect = 2e-20
 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 9/188 (4%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS--LTLFKNGWSVLDALGV 115
           K  + I+GAG +GL     L + GI ++++E+       G      L +    +L   GV
Sbjct: 2   KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGV 61

Query: 116 GSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL---PPE 172
              +    L  +G+ +      + R    K     + V    +  +   L          
Sbjct: 62  DRRMARDGLVHEGVEIA--FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT 119

Query: 173 SVQFSSELAKIETSGNGVTILELVNGT--RIYANIVIGCDGIRSPIAKWIGFSEPKYVGH 230
           +V  ++E+   +  G    +    +G   R+  + + GCDG      + I     ++   
Sbjct: 120 TVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERMQHGRL 179

Query: 231 CAYRGLGY 238
                  +
Sbjct: 180 FLAGDAAH 187

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 84.8 bits (208), Expect = 1e-19
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 11/211 (5%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           DI+I GAGI GL+ A++L + GIG   ++E +  +R  G  + +       L  LG+G  
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 62

Query: 119 LRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAV-----ERRILLETLANQLPPES 173
           L +  +    +    + G  + S     E  +   +        + ILL  +  +L  ++
Sbjct: 63  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA 122

Query: 174 VQFSSELAKIETSGNGVTILELVNGT----RIYANIVIGCDGIRSPIAKWIGFSEPKYVG 229
           V+    + +IE     V I    +G      + A++++G DGI S +   +   +     
Sbjct: 123 VRTGLGVERIEERDGRVLI-GARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLRD 181

Query: 230 HCAYRGLGYYPNGQPFEPKLNYIYGRGVRAG 260
              + G G           +  +   G    
Sbjct: 182 PLPHWGRGRITLLGDAAHLMYPMGANGASQA 212

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 80.2 bits (196), Expect = 9e-18
 Identities = 41/228 (17%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 60  DIVIVGAGIAGLATAVSL-----QRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALG 114
           D++IVGAG AGL  A  L     Q+  +   +I++  +    G +  L       L  LG
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 68

Query: 115 VGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESV 174
           +   + S+  ++  +A+ + D         +  D    +    + +L +    +   +S+
Sbjct: 69  LADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSI 128

Query: 175 QFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGF-----SEPKYVG 229
                    E S   + +   +   ++  +     D    P+   + +     S P   G
Sbjct: 129 A--------EISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFG 180

Query: 230 HCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPTKVYWFICHNN 277
           H    GL         E   NY    G  AG +     K        +
Sbjct: 181 HKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGH 228

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 72.1 bits (175), Expect = 3e-15
 Identities = 39/176 (22%), Positives = 61/176 (34%), Gaps = 10/176 (5%)

Query: 59  EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS-LRTGGTSLTLFKNGWSVLDALGVGS 117
           + I +VG  I+GL  A+ L+  G+   V E++   L   GT + +       L   GV  
Sbjct: 5   DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL 64

Query: 118 DLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFS 177
           D     + +   +++  D       G    D            +   L     PE    S
Sbjct: 65  D----SISVPSSSMEYVDALTGERVGSVPADWRF----TSYDSIYGGLYELFGPERYHTS 116

Query: 178 SELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAKWIGFSEPKYVGHCAY 233
             L  +      V  +   +GT+  AN VIG DG  S + K +   E         
Sbjct: 117 KCLVGLSQDSETVQ-MRFSDGTKAEANWVIGADGGASVVRKRLLGIETVDRMVHGR 171

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.0 bits (129), Expect = 5e-09
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD 111
           D +IVG+G+ G   A  L++L    LVIE+ +    GG + T    G  +  
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN--HIGGNAYTEDCEGIQIHK 52

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
           ++ +VG GI+GLA A  L+  G  ++++E +   R GG   T    G+ V
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA--RLGGAVGTHALAGYLV 49

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDA 112
           D+V+VG GI+G+A A  L   G+  +V+E  D  R GG + TL       +D 
Sbjct: 1   DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD--RVGGRTYTLRNQKVKYVDL 51

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 51.3 bits (121), Expect = 3e-08
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D+++VGAG  G+A    L + G+ +L+++  D   T G+ 
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 8e-08
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
           +   ++I+G+G++GLA A  LQ  G+   ++E  D  R GG   T  K  +  
Sbjct: 4   KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD--RVGGRVATFRKGNYVA 54

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 50.0 bits (118), Expect = 9e-08
 Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 9/164 (5%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           D++++G G +GL  A+     G   L++++ + L          +   +    L      
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKH 63

Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFK---DEDASQEVRAVERRILLETLANQLPPESVQ- 175
                     A    +  ++ +F              R        +++ + L       
Sbjct: 64  IPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDL 123

Query: 176 -----FSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS 214
                 ++ +  IE        + L  G  +  N V+   G +S
Sbjct: 124 GVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 167

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTSLTLFKNGWSV 109
            +++VGAG++G++ A  L   GI   L++E  D    GG        G +V
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATD--HIGGRMHKTNFAGINV 50

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 35/196 (17%), Positives = 66/196 (33%), Gaps = 11/196 (5%)

Query: 42  SKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSL-QRLGIGSLVIEQADSLRTGGTSL 100
           S+ +            + D+V+VGAG AGL+ A  + +   +   +IEQ+ S   GG + 
Sbjct: 17  SREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP--GGGAW 74

Query: 101 TLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED--GRELRSFGFKDEDASQEVRAVER 158
                G  +  A+ V       FL+  G+A   +D       +  F     S+ +     
Sbjct: 75  ----LGGQLFSAMIVRKPAH-LFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNV 129

Query: 159 RILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSPIAK 218
           ++     A  L  +  +    +               ++   + A IV+   G   P   
Sbjct: 130 KLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGA 189

Query: 219 WIGFSEPKYVGHCAYR 234
                    +G   + 
Sbjct: 190 TGVKRLKS-IGMIDHV 204

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
           D++++G G+     +  +   G   L +++      GG S ++    
Sbjct: 8   DVIVLGTGLTECILSGIMSVNGKKVLHMDRNP--YYGGESSSITPLE 52

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
           + D+++VGAG +GL     L+ LG    VIE A  +  GG 
Sbjct: 6  EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV--GGV 45

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 33  CFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS 92
           CFQ         I  +  KA ++ +   +VIVGAG+AGL+ A  L   G    V+E ++ 
Sbjct: 7   CFQENDYEEFLEIARNGLKATSNPKH--VVIVGAGMAGLSAAYVLAGAGHQVTVLEASE- 63

Query: 93  LRTGGTSLTLFKNGW 107
            R GG   T      
Sbjct: 64  -RPGGRVRTYRNEEA 77

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGS-LVIEQADSLRTGGTS 99
           IVI+GAGI G   A  L   G  +  V++Q      GG++
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGST 43

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSV 109
           + ++GAG++GLA A  L+  G+   V E     + GG   ++ ++G   
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG--KAGGKLRSVSQDGLIW 50

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.7 bits (112), Expect = 6e-07
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 50 AKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          A A A     D+V+VG+G AG + A+S    G   ++IE+      GG +
Sbjct: 8  ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEP--VIGGNA 55

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.7 bits (112), Expect = 7e-07
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 48 SIAKAEADVRKE--DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
           I KA A    E   +++VGAG AG   +++ ++ G   +++++A    +GG S
Sbjct: 7  KIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAP--FSGGNS 58

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 8e-07
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
           D++++G GI     +  L   G   L I++ D    GG + ++  +  
Sbjct: 7   DVIVLGTGITECILSGLLSVDGKKVLHIDKQD--HYGGEAASVTLSQL 52

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 47.1 bits (110), Expect = 8e-07
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          + V++G GI G A A  L +    + + E       G T+
Sbjct: 6  EAVVIGGGIIGSAIAYYLAKENKNTALFESGT--MGGRTT 43

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 46.8 bits (110), Expect = 9e-07
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 8/163 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL----RTGGTSLTLFKNGWSVLDALGV 115
           + +I+GAG AGL  A  L +LG    V +    +       G     F N          
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS 65

Query: 116 GSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQ 175
            +    +    +            +   + +++  Q         ++E L ++      +
Sbjct: 66  QNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAK 125

Query: 176 --FSSELAKIETSGN--GVTILELVNGTRIYANIVIGCDGIRS 214
               SE++++E   N   V  +  VN T+     +I   G  S
Sbjct: 126 ILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVL 110
           + + I+IVGAG +G      L   G    +I+Q D    GG S     +  +V+
Sbjct: 1   KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD--HIGGNSYDARDSETNVM 52

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTG 96
          VR+ D V++GAG AG+  A+ + + G    ++ +    R+ 
Sbjct: 5  VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH 45

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTS 99
          D+VI+G+G AGLA AVS +  G   +++E+      GG +
Sbjct: 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP--IPGGNT 62

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR 94
          D +++G G+AGL  AV+ Q+ G+ ++V+      R
Sbjct: 7  DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKR 41

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDL 119
           D+VI+G G  G   A+   +LG  +  IE+  +L  GGT L +       L         
Sbjct: 5   DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL--GGTCLNVGCIPSKALLHSSHMYHE 62

Query: 120 RSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVER 158
                   G+ V + +       G KD+  S   R +E 
Sbjct: 63  AKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEG 101

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 12/79 (15%)

Query: 61  IVIVGAGIAGLATAVSLQRLGIGS--LVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSD 118
           I I+GAG +GL TA +L          + E+  S   GG         W+    L     
Sbjct: 7   IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP--GGV--------WNYTSTLSNKLP 56

Query: 119 LRSQFLEIKGMAVKSEDGR 137
           + S    +    +      
Sbjct: 57  VPSTNPILTTEPIVGPAAL 75

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGS--LVIEQADSLRTG 96
          D+ IVGAG AGL  A++  +    +   +I +   +R+ 
Sbjct: 7  DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH 45

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 9/32 (28%), Positives = 22/32 (68%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQ 89
          ++ +V++G+G+ GL++A+ L R G    ++ +
Sbjct: 6  QKRVVVLGSGVIGLSSALILARKGYSVHILAR 37

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 61 IVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91
          +V++GAG+ GL+TA+ +       L      
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLDVK 33

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (94), Expect = 9e-05
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 57  RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT 101
           +  D+VI+G G AG   A+   +LG  +  +E+   L  GGT L 
Sbjct: 4   KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL--GGTCLN 46

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSL 100
           D+V++G G  G + A +    G+   ++E+  +L  GG  L
Sbjct: 8   DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL--GGVCL 46

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGS----LVIEQADSLRTGGTS 99
          DI+I+G G +G   A               ++E+A   R+G  +
Sbjct: 23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVA 66

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVL 110
           D +++G G  GLA+A     LG  + V+E     + GGT + +      V+
Sbjct: 5   DYLVIGGGSGGLASARRAAELGARAAVVESH---KLGGTCVNVGCVPKKVM 52

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 53 EADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL 93
          E D R+ D + +G G AG   +  L+ +G   L++++   L
Sbjct: 37 ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL 77

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 6/41 (14%)

Query: 60 DIVIVGAGIAGLATAVSLQRL------GIGSLVIEQADSLR 94
          D+VIVGAG AGL+ A  L++L       +   ++E+A  + 
Sbjct: 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIE 88
          +     + IVG+G A    A+   R  +  L+ E
Sbjct: 2  ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFE 35

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSL 100
           D++++G G  G+A A    R      ++E++   R GGT +
Sbjct: 3   DLIVIGGGSGGMAAARRAARHNAKVALVEKS---RLGGTCV 40

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 6e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91
           +++VIVG G+AG+  A  L+  G    +    D
Sbjct: 3  NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 42 SKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          S+A+     K        D++IVGAG +GL+ A  + +      V     S+  GG 
Sbjct: 34 SRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 90

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
           + ++VGAG  G   A+   +LG    ++E+      GG  L +     
Sbjct: 5   ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG---NLGGVCLNVGCIPS 49

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIE 88
          +   ++I+G+G AG   AV   R  +  ++I 
Sbjct: 4  KHSKLLILGSGPAGYTAAVYAARANLQPVLIT 35

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIE 88
          D++IVG+G AG A A+   R GI + ++ 
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMG 31

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 58  KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGS 117
           K  +V++GAG+A ++    L++ G   L+    D          L K+  +  DA  +  
Sbjct: 3   KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 62

Query: 118 DLR 120
           D +
Sbjct: 63  DCK 65

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGW 107
           D + +G G  G+A+       G    +IE       GGT + +     
Sbjct: 4   DYIAIGGGSGGIASINRAAMYGQKCALIEAK---ELGGTCVNVGCVPK 48

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT 101
           D++I+G+G AGL+ A+ L       +V+ +      G T   
Sbjct: 9   DVLIIGSGAAGLSLALRLADQHQ-VIVLSKGPVTE-GSTFYA 48

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNG 106
            ++IVGAG +G  TA  L + G+   ++ Q  SL          K  
Sbjct: 4   QVLIVGAGFSGAETAFWLAQKGVRVGLLTQ--SLDAVMMPFLPPKPP 48

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)

Query: 61 IVIVGAGIAGLATAVSLQRLGIGSLV--IEQADSLRTGG 97
          I +VG+G AG  TA  L +    + V   E+       G
Sbjct: 4  ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP--FG 40

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGT 98
          +K D++++GAG  G   A+   +LG+ + +IE+         
Sbjct: 2  QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 61 IVIVGAGIAGLATAVSLQRLGIGS-LVIEQAD 91
          I ++GAG A ++ A  L RLG     + E+ +
Sbjct: 7  IALLGAGPASISCASFLARLGYSDITIFEKQE 38

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVI 87
          R   I IVG+G +    A SL +    +  +
Sbjct: 1  RPYYIAIVGSGPSAFFAAASLLKAADTTEDL 31

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 60  DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSL 100
            IVI+G G AG   A+        +  +   D    GG ++
Sbjct: 3   RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAV 43

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD 91
          D++I+G G  GLA A    +     +V++   
Sbjct: 5  DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.86
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.85
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.83
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.77
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.74
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.7
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.66
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.64
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.63
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.62
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.59
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.58
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.57
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.56
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.54
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.53
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.52
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.49
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.49
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.49
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.49
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.48
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.46
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.46
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.46
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.46
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.45
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.45
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.45
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.44
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.44
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.44
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.44
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.4
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.38
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.38
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.37
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.37
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.32
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.32
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.29
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.28
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.26
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.24
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.15
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.15
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.1
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.1
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.05
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.05
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.96
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.95
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.93
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.92
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.9
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.85
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.82
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.82
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.81
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.81
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.79
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.77
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.73
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.73
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.73
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.68
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.68
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.66
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.66
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.66
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.64
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.62
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.59
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.59
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.56
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.53
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.48
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.47
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.4
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.4
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.37
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.36
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.35
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.33
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.3
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.3
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.26
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.18
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.12
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.96
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.96
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.79
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.74
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.66
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.57
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.55
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.42
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.38
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.31
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.24
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.18
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.18
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.12
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.1
d2voua2	128	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.09
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.82
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.75
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.74
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.71
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.66
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.63
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.6
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.56
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.43
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.39
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.37
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.36
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.25
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.24
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.11
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.09
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.09
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.07
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	96.06
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.01
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.98
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.98
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.93
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.92
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.92
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.79
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.77
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.74
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.71
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.66
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.65
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.59
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.54
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.53
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.49
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.48
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.41
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.37
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.37
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.36
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.26
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.24
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.21
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.2
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.2
d3c96a2	111	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.14
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.83
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.81
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.71
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.62
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.59
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.56
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.49
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.26
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.25
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.22
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.05
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.98
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.83
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.7
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.67
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.66
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.62
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.59
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.38
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.26
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.21
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.7
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.61
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.45
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.39
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	92.32
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.1
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.74
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.5
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.44
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.18
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.05
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.83
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.8
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.78
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.66
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.37
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.33
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.11
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.86
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.6
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.41
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	89.29
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.28
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	88.99
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	88.85
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.8
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.71
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	88.7
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.5
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.42
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.42
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.34
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	88.29
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	88.28
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	88.09
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.08
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.95
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.81
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.79
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	87.37
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	87.16
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.86
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.83
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	86.74
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.48
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.48
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.46
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	86.22
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.16
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.11
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.01
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	85.95
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	85.85
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	85.75
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	85.6
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	85.44
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	85.39
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	85.3
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.29
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.23
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	85.23
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	85.22
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	84.96
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	84.81
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.75
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	84.67
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.39
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	84.36
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.24
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	84.19
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.08
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	84.01
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	83.91
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	83.9
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.87
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.82
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.8
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	83.73
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	83.55
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	83.52
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.41
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	83.28
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.14
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.12
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	83.07
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	83.01
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	82.89
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	82.86
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.79
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	82.46
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.28
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.11
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	82.1
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	82.04
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.67
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	81.16
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	80.98
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	80.83
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	80.61
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	80.5
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	80.49
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	80.44
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.35
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.24

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=1.1e-20  Score=157.03  Aligned_cols=165  Identities=23%  Similarity=0.355  Sum_probs=130.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      +.||+|||||++||++|+.|+++|+ +|+|+||++.+...++++.+.+++.+.|+++++.+.+...............++
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            4699999999999999999999997 899999999998889999999999999999999999988887777778888888


Q ss_pred             ceEEEecCCCCC-CCcceeeecHHHHHHH----HHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC----cEEEcCEEE
Q 022277          137 RELRSFGFKDED-ASQEVRAVERRILLET----LANQLPPESVQFSSELAKIETSGNGVTILELVNG----TRIYANIVI  207 (300)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~i~~~~l~~~----l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g----~~~~ad~vV  207 (300)
                      ..+......... .........+......    ..+...++.+.++++++.+...++++. |.+.++    +++.+|+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~-v~~~~g~~~~~~~~ad~vi  159 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVL-IGARDGHGKPQALGADVLV  159 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEE-EEEEETTSCEEEEEESEEE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEE-EEEEcCCCCeEEEeeceee
Confidence            777655544322 2222333333333222    223335789999999999999888754 777765    379999999


Q ss_pred             EcCCCChHhhhhcCCC
Q 022277          208 GCDGIRSPIAKWIGFS  223 (300)
Q Consensus       208 ~A~G~~s~~r~~~g~~  223 (300)
                      +|+|.+|.+++.+...
T Consensus       160 ~ADG~~S~vr~~~~~~  175 (288)
T d3c96a1         160 GADGIHSAVRAHLHPD  175 (288)
T ss_dssp             ECCCTTCHHHHHHCTT
T ss_pred             ccCCccceeeeeeccc
Confidence            9999999999988443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=8e-21  Score=158.87  Aligned_cols=164  Identities=18%  Similarity=0.260  Sum_probs=123.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR--TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~--~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      +++||+||||||+||++|+.|+++|++|+||||.+...  ...++..+.++++++|+++|+++.+.....+...+.++..
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~   80 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA   80 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEec
Confidence            35799999999999999999999999999999987543  3456788999999999999999999888888777777764


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEE-cCCceEEEEE-cCCc--EEEcCEEEE
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIET-SGNGVTILEL-VNGT--RIYANIVIG  208 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~-~~~~~~~v~~-~~g~--~~~ad~vV~  208 (300)
                      .+...  ............+.+.+..+.+.|.+.+  .+..+.++..++.... +++++. |.+ ++|+  +++||+||+
T Consensus        81 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~g~~~~i~a~~vVg  157 (292)
T d1k0ia1          81 GQRRR--IDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPY-VTFERDGERLRLDCDYIAG  157 (292)
T ss_dssp             TEEEE--ECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCE-EEEEETTEEEEEECSEEEE
T ss_pred             ccccc--cccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceE-EEEecCCcEEEEEeCEEEE
Confidence            43332  2222223345566788888888887766  3556666665555544 445543 555 4553  578999999


Q ss_pred             cCCCChHhhhhcCCC
Q 022277          209 CDGIRSPIAKWIGFS  223 (300)
Q Consensus       209 A~G~~s~~r~~~g~~  223 (300)
                      |||.+|.+|+.++..
T Consensus       158 ADG~~S~vR~~i~~~  172 (292)
T d1k0ia1         158 CDGFHGISRQSIPAE  172 (292)
T ss_dssp             CCCTTCSTGGGSCGG
T ss_pred             CCCCCCcccceeeec
Confidence            999999999988544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.83  E-value=1.9e-19  Score=148.07  Aligned_cols=154  Identities=25%  Similarity=0.258  Sum_probs=116.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-CCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc-C
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR-TGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS-E  134 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~-~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~  134 (300)
                      ...+|+|||||++||++|..|+++|++|+||||++.+. ..+.++.+.+++.+.++.+|+..+.....  ........ .
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~   80 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVP--SSSMEYVDAL   80 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBC--CCEEEEEETT
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccC--CCcceeEecc
Confidence            45789999999999999999999999999999988753 35778899999999999999976654322  22233322 3


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      .+........       .........+...+.....+..++++++++++...+++ +.++++||+++++|++|.|+|.+|
T Consensus        81 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          81 TGERVGSVPA-------DWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-VQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TCCEEEEEEC-------CCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-EEEEETTSCEEEESEEEECCCTTC
T ss_pred             CCceeccccc-------ccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc-eEEEECCCCEEEEEEEeccccccc
Confidence            3443332221       12223344454555555557899999999999998887 559999999999999999999999


Q ss_pred             Hhhhhc
Q 022277          215 PIAKWI  220 (300)
Q Consensus       215 ~~r~~~  220 (300)
                      .++..+
T Consensus       153 ~~r~~~  158 (265)
T d2voua1         153 VVRKRL  158 (265)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            999877

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.77  E-value=1.8e-18  Score=141.17  Aligned_cols=148  Identities=19%  Similarity=0.251  Sum_probs=89.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC------CCceeeEchhHHHHH-HHcCCcH----HHHhcc--
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT------GGTSLTLFKNGWSVL-DALGVGS----DLRSQF--  123 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~------~g~~~~~~~~~~~~l-~~~g~~~----~~~~~~--  123 (300)
                      +++||+|||||++||++|+.|+++|++|+||||++.++.      .+............+ .......    ......  
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            469999999999999999999999999999999987642      111111111111111 1111000    000000  


Q ss_pred             ------ccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE
Q 022277          124 ------LEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL  195 (300)
Q Consensus       124 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~  195 (300)
                            ....++.........            ..........+.+.|.+.+  .|++|+++++|+++..+++.+..|.+
T Consensus        81 ~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~  148 (251)
T d2i0za1          81 EDIITFFENLGVKLKEEDHGR------------MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVIL  148 (251)
T ss_dssp             HHHHHHHHHTTCCEEECGGGE------------EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHhcCCccccccccc------------eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEe
Confidence                  000011111100000            0001122345556665554  48999999999999998888777899


Q ss_pred             cCCcEEEcCEEEEcCCCChHh
Q 022277          196 VNGTRIYANIVIGCDGIRSPI  216 (300)
Q Consensus       196 ~~g~~~~ad~vV~A~G~~s~~  216 (300)
                      ++|++++||.||+|+|..|..
T Consensus       149 ~~g~~i~a~~vI~AtGg~S~p  169 (251)
T d2i0za1         149 QTGEVLETNHVVIAVGGKSVP  169 (251)
T ss_dssp             TTCCEEECSCEEECCCCSSSG
T ss_pred             CCCCeEecCeEEEccCCcccc
Confidence            999999999999999998854

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.74  E-value=5.4e-18  Score=140.67  Aligned_cols=70  Identities=13%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-hhhhcCCCCCc
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPK  226 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-~r~~~g~~~~~  226 (300)
                      .++...+...|.+.+  .|++++++++|++++.++++ +.|.+++| ++.||.||+|+|.++. +.+.+|+..|.
T Consensus       146 ~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~~~~~  218 (281)
T d2gf3a1         146 VLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-VKIETANG-SYTADKLIVSMGAWNSKLLSKLNLDIPD  218 (281)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-EEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEECCT
T ss_pred             cccccccccccccccccccccccCCcEEEEEEEECCE-EEEEECCc-EEEcCEEEECCCCcchhhHHhcCCcccc
Confidence            467788888887766  58999999999999998887 56999888 5999999999999984 56666765543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.70  E-value=1.9e-17  Score=136.83  Aligned_cols=70  Identities=17%  Similarity=0.289  Sum_probs=57.7

Q ss_pred             eecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-HhhhhcCCCCCc
Q 022277          155 AVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAKWIGFSEPK  226 (300)
Q Consensus       155 ~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~~~g~~~~~  226 (300)
                      .++...+.+.|.+.+  .|++|+.+++|++|+.+++. +.|.+++| ++.||.||+|+|.|| .+.+.+|+..+.
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~~~  219 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEA-LFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAD  219 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSS-EEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCS
T ss_pred             eeecccchhHHHHHHHHcCCEEecceEEEeEEeecce-EEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCccc
Confidence            467778888887766  58999999999999977655 67999887 699999999999998 477778876553

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.69  E-value=6e-17  Score=135.83  Aligned_cols=76  Identities=26%  Similarity=0.351  Sum_probs=63.3

Q ss_pred             eeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCChH-hhhhcCCCCCccccc
Q 022277          154 RAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRSP-IAKWIGFSEPKYVGH  230 (300)
Q Consensus       154 ~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s~-~r~~~g~~~~~~~~~  230 (300)
                      ..++...+...|.+.+  .|++|+++++|++++.++++++.|.+++| +++||.||+|+|.||. +.+.+|...|...+.
T Consensus       143 g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~lP~~~~~  221 (305)
T d1pj5a2         143 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVPPDGGP  221 (305)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCCTTSCC
T ss_pred             cccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCcccccccc
Confidence            3567788888887766  59999999999999999998888999887 6999999999999985 566678877765544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=2.9e-16  Score=128.17  Aligned_cols=143  Identities=22%  Similarity=0.265  Sum_probs=84.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCC-----CCceeeEc-------------hh-HHHHHHHcCCcH
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRT-----GGTSLTLF-------------KN-GWSVLDALGVGS  117 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~-----~g~~~~~~-------------~~-~~~~l~~~g~~~  117 (300)
                      +.+||+|||||++||++|+.|+++|++|+||||.+.++.     ++..+.+.             +. ....+......+
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccc
Confidence            468999999999999999999999999999999987642     11111111             11 112222222111


Q ss_pred             HHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCc--eEEE
Q 022277          118 DLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNG--VTIL  193 (300)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~--~~~v  193 (300)
                      .+ . .....+..+........             +..-....+.+.|.+.+  .|++|+++++|++++..+++  +..+
T Consensus        83 ~~-~-~~~~~g~~~~~~~~~~~-------------~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~  147 (253)
T d2gqfa1          83 FI-S-LVAEQGITYHEKELGQL-------------FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFV  147 (253)
T ss_dssp             HH-H-HHHHTTCCEEECSTTEE-------------EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEE
T ss_pred             hh-h-hhhhcCcceeeecCCcc-------------ccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEE
Confidence            11 0 00111111111111111             11112344555555444  38999999999999887653  2224


Q ss_pred             EEcCCcEEEcCEEEEcCCCCh
Q 022277          194 ELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       194 ~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      ...++.+++||.||+|+|..|
T Consensus       148 ~~~~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         148 LQVNSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             EEETTEEEEESEEEECCCCSS
T ss_pred             EecCCEEEEeCEEEEcCCccc
Confidence            455667899999999999876

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.1e-15  Score=107.46  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=77.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..+                  
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~------------------d~~------------------   63 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF------------------DPM------------------   63 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS------------------CHH------------------
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhc------------------chh------------------
Confidence            45789999999999999999999999999999998763210                  000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                                          -...+.+.|.++  |++++++++|+.+..++++.+.+.+++|+++.+|.||.|+|
T Consensus        64 --------------------~~~~~~~~l~~~--GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          64 --------------------ISETLVEVMNAE--GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             --------------------HHHHHHHHHHHH--SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             --------------------hHHHHHHHHHHC--CCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence                                112344444444  99999999999999887765668999999999999999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=3e-15  Score=109.26  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=85.8

Q ss_pred             cceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHH
Q 022277           33 CFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDA  112 (300)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~  112 (300)
                      .+..++..+...++....      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.....              
T Consensus        16 v~~lr~~~d~~~l~~~~~------~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~--------------   75 (133)
T d1q1ra2          16 FRYLRTLEDAECIRRQLI------ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVT--------------   75 (133)
T ss_dssp             EEESSSHHHHHHHHHTCC------TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS--------------
T ss_pred             eeEeCCHHHHHHHHHhhc------cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccccc--------------
Confidence            344566666666554433      457999999999999999999999999999999997632110              


Q ss_pred             cCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC--ce
Q 022277          113 LGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN--GV  190 (300)
Q Consensus       113 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~--~~  190 (300)
                         .+.                                      -...+.+.+.+.  |++++++++|+.++...+  .+
T Consensus        76 ---~~~--------------------------------------~~~~~~~~~~~~--GV~i~~~~~v~~i~~~~~~~~v  112 (133)
T d1q1ra2          76 ---APP--------------------------------------VSAFYEHLHREA--GVDIRTGTQVCGFEMSTDQQKV  112 (133)
T ss_dssp             ---CHH--------------------------------------HHHHHHHHHHHH--TCEEECSCCEEEEEECTTTCCE
T ss_pred             ---chh--------------------------------------hhhhhhhccccc--ccEEEeCCeEEEEEEeCCCceE
Confidence               000                                      011233444444  999999999999987643  45


Q ss_pred             EEEEEcCCcEEEcCEEEEcCC
Q 022277          191 TILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       191 ~~v~~~~g~~~~ad~vV~A~G  211 (300)
                      ..|.+++|+++.+|.||+|.|
T Consensus       113 ~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         113 TAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEEEETTSCEEECSEEEECCC
T ss_pred             EEEECCCCCEEECCEEEEeeC
Confidence            568899999999999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.62  E-value=2.5e-15  Score=107.69  Aligned_cols=111  Identities=22%  Similarity=0.304  Sum_probs=83.8

Q ss_pred             cceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHH
Q 022277           33 CFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDA  112 (300)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~  112 (300)
                      .+..|+.++...++....      ...+++|||||++|+.+|..|+++|.+|+++|+.+.+.+...              
T Consensus        11 v~~lrtl~Da~~l~~~~~------~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~--------------   70 (121)
T d1d7ya2          11 VHTLRTLEDARRIQAGLR------PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAA--------------   70 (121)
T ss_dssp             EEECCSHHHHHHHHHHCC------TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTS--------------
T ss_pred             EEEeCCHHHHHHHHHhhh------cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccC--------------
Confidence            566788888877766554      457999999999999999999999999999999997632100              


Q ss_pred             cCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEE
Q 022277          113 LGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTI  192 (300)
Q Consensus       113 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~  192 (300)
                         ..                                      -....+.+.|.+.  |++++++++|+++..  +.   
T Consensus        71 ---~~--------------------------------------~~~~~~~~~l~~~--GV~i~~~~~v~~~~~--~~---  102 (121)
T d1d7ya2          71 ---PA--------------------------------------TLADFVARYHAAQ--GVDLRFERSVTGSVD--GV---  102 (121)
T ss_dssp             ---CH--------------------------------------HHHHHHHHHHHTT--TCEEEESCCEEEEET--TE---
T ss_pred             ---CH--------------------------------------HHHHHHHHHHHHC--CcEEEeCCEEEEEeC--CE---
Confidence               00                                      0011233344333  999999999998753  33   


Q ss_pred             EEEcCCcEEEcCEEEEcCC
Q 022277          193 LELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       193 v~~~~g~~~~ad~vV~A~G  211 (300)
                      |.++||+++.||.||.|+|
T Consensus       103 v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         103 VLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             EEETTSCEEECSEEEECSC
T ss_pred             EEECCCCEEECCEEEEeeC
Confidence            7789999999999999998

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.59  E-value=8.3e-15  Score=122.76  Aligned_cols=40  Identities=30%  Similarity=0.476  Sum_probs=36.3

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      +...+||+|||||++||++|+.|+++|.+|+||||.+..+
T Consensus        13 p~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~g   52 (308)
T d1y0pa2          13 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG   52 (308)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            3457999999999999999999999999999999988653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.58  E-value=2.7e-15  Score=128.03  Aligned_cols=148  Identities=16%  Similarity=0.194  Sum_probs=104.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-----HcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQ-----RLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAV  131 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~-----~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  131 (300)
                      ..+||+||||||+||++|..|+     ++|++|+||||.+.+...++++.+.++++++|+++|+++++...........+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~   85 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIAL   85 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcCCcceeEE
Confidence            4699999999999999999996     57999999999999988999999999999999999999999988887777666


Q ss_pred             EcC--CCceEEEecCC---CCCCCcceeeecHHHHHHHHHhcC---CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEc
Q 022277          132 KSE--DGRELRSFGFK---DEDASQEVRAVERRILLETLANQL---PPESVQFSSELAKIETSGNGVTILELVNGTRIYA  203 (300)
Q Consensus       132 ~~~--~~~~~~~~~~~---~~~~~~~~~~i~~~~l~~~l~~~~---~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~a  203 (300)
                      ...  .+.........   ..........+.+..+...+.+..   ........+.+.                +..+.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~~  149 (360)
T d1pn0a1          86 YNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLI----------------PEKMEI  149 (360)
T ss_dssp             EEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEE----------------EEEEEE
T ss_pred             EecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEecc----------------cceEEe
Confidence            553  23222211111   112233345567777776666544   111111111111                224678


Q ss_pred             CEEEEcCCCChHhhhhc
Q 022277          204 NIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       204 d~vV~A~G~~s~~r~~~  220 (300)
                      |.++.|+|.+|.++...
T Consensus       150 d~~~~~dg~~s~v~~~~  166 (360)
T d1pn0a1         150 DSSKAEDPEAYPVTMTL  166 (360)
T ss_dssp             CGGGTTCTTCCCEEEEE
T ss_pred             eEEEEeecCCcceEEEE
Confidence            88889999888876554

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.57  E-value=4.4e-15  Score=123.50  Aligned_cols=136  Identities=21%  Similarity=0.222  Sum_probs=84.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...||+|||||++||++|..|.++|++|+|||+++.++  |.        +...+..|+..+.........         
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iG--Gt--------W~~n~ypg~~~d~~~~~~~~s---------   66 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG--GV--------WYWNRYPGARCDIESIEYCYS---------   66 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--TH--------HHHCCCTTCBCSSCTTTSSCC---------
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcc--cc--------cccCCCCCceecccccccccc---------
Confidence            57899999999999999999999999999999999873  31        111011111100000000000         


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCC--eEEeCCeEEEEEEcC-CceEEEEEcCCcEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPE--SVQFSSELAKIETSG-NGVTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~--~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                          ..+..............+.++.+.|.+.+  .++  .|+++++|+++..++ ++.|.|++.++.++++|+||.|+|
T Consensus        67 ----~~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG  142 (298)
T d1w4xa1          67 ----FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASG  142 (298)
T ss_dssp             ----SCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCC
T ss_pred             ----ccccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeec
Confidence                00000000001111234455555554433  144  699999999998654 356999999999999999999999


Q ss_pred             CChH
Q 022277          212 IRSP  215 (300)
Q Consensus       212 ~~s~  215 (300)
                      ..|.
T Consensus       143 ~ls~  146 (298)
T d1w4xa1         143 QLSD  146 (298)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            8663

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.56  E-value=2.2e-14  Score=102.36  Aligned_cols=98  Identities=19%  Similarity=0.205  Sum_probs=76.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL---GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~---G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      .+.+++|||||++|+.+|..|++.   |.+|+++|+.+.+.+.-.                  ++               
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d------------------~~---------------   63 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFD------------------SE---------------   63 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSC------------------HH---------------
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccccc------------------ch---------------
Confidence            457999999999999999887764   889999999987632100                  00               


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                                             -...+.+.|.+.  |++++++++|++++.+++++..+.+++|+++.||.||.|+|+
T Consensus        64 -----------------------~~~~~~~~l~~~--GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          64 -----------------------LRKQLTEQLRAN--GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             -----------------------HHHHHHHHHHHT--TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             -----------------------hhHHHHHHHhhC--cEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence                                   112344444444  899999999999998877767799999999999999999994

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.54  E-value=1e-13  Score=98.95  Aligned_cols=97  Identities=20%  Similarity=0.273  Sum_probs=74.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+.+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..++                
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~------------------d~ei----------------   65 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV------------------DEQV----------------   65 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS------------------CHHH----------------
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcc------------------cchh----------------
Confidence            356899999999999999999999999999999998763211                  0111                


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC---cEEEcCEEEEcCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG---TRIYANIVIGCDG  211 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g---~~~~ad~vV~A~G  211 (300)
                                            ...+.+.|.+.  |++++++++|++++.+++++. |++.++   +++.||.|++|+|
T Consensus        66 ----------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          66 ----------------------AKEAQKILTKQ--GLKILLGARVTGTEVKNKQVT-VKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ----------------------HHHHHHHHHHT--TEEEEETCEEEEEEECSSCEE-EEEESSSEEEEEEESEEEECSC
T ss_pred             ----------------------HHHHHHHHHhc--CceeecCcEEEEEEEeCCEEE-EEEEECCCCEEEECCEEEEeeC
Confidence                                  11334444443  899999999999999888744 666554   4799999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.3e-14  Score=102.12  Aligned_cols=114  Identities=15%  Similarity=0.181  Sum_probs=83.6

Q ss_pred             ceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHH----cCCcEEEEecCCCcCCCCceeeEchhHHHH
Q 022277           34 FQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQR----LGIGSLVIEQADSLRTGGTSLTLFKNGWSV  109 (300)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~----~G~~V~viE~~~~~~~~g~~~~~~~~~~~~  109 (300)
                      +.+|+..+...+.....      ...+++|||||++|+.+|..|++    .|.+|+++|+.+.+.....           
T Consensus        19 ~~~r~~~d~~~l~~~~~------~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~-----------   81 (137)
T d1m6ia2          19 TLFRKIGDFRSLEKISR------EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKIL-----------   81 (137)
T ss_dssp             EECCSHHHHHHHHHHHH------HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTS-----------
T ss_pred             EEEcCHHHHHHHHHHhh------cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccC-----------
Confidence            33456666666655544      45689999999999999999964    5999999999887631100           


Q ss_pred             HHHcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCc
Q 022277          110 LDALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG  189 (300)
Q Consensus       110 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~  189 (300)
                            ..+                                      -...+.+.|.+.  |+++++++.|++++.++++
T Consensus        82 ------~~~--------------------------------------~~~~~~~~l~~~--GV~~~~~~~V~~i~~~~~~  115 (137)
T d1m6ia2          82 ------PEY--------------------------------------LSNWTMEKVRRE--GVKVMPNAIVQSVGVSSGK  115 (137)
T ss_dssp             ------CHH--------------------------------------HHHHHHHHHHTT--TCEEECSCCEEEEEEETTE
T ss_pred             ------CHH--------------------------------------HHHHHHHHHHhC--CcEEEeCCEEEEEEecCCE
Confidence                  000                                      011233334333  9999999999999988776


Q ss_pred             eEEEEEcCCcEEEcCEEEEcCC
Q 022277          190 VTILELVNGTRIYANIVIGCDG  211 (300)
Q Consensus       190 ~~~v~~~~g~~~~ad~vV~A~G  211 (300)
                       ..|.+++|+++.||.||.|+|
T Consensus       116 -~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         116 -LLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             -EEEEETTSCEEEESEEEECCC
T ss_pred             -EEEEECCCCEEECCEEEEeec
Confidence             459999999999999999999

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.52  E-value=8.7e-14  Score=98.89  Aligned_cols=95  Identities=18%  Similarity=0.272  Sum_probs=74.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..+                  
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~------------------d~~------------------   64 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF------------------DES------------------   64 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTS------------------CHH------------------
T ss_pred             CCCEEEEECCchHHHHHHHHHHhccccceeeehhccccccc------------------cHH------------------
Confidence            35789999999999999999999999999999998763110                  011                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEE-cCEEEEc
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIY-ANIVIGC  209 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~-ad~vV~A  209 (300)
                                          -+..+.+.|.+.  |++++++++|++++..+++.+.+.+++|+.++ +|.||.|
T Consensus        65 --------------------~~~~~~~~l~~~--gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          65 --------------------VINVLENDMKKN--NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             --------------------HHHHHHHHHHhC--CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence                                112344444443  99999999999999877765669999998775 6999987

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.49  E-value=9.4e-14  Score=116.99  Aligned_cols=40  Identities=35%  Similarity=0.477  Sum_probs=36.0

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ....+||+|||||++||++|+.|+++|++|+||||.+..+
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~g   59 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG   59 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSC
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            3456899999999999999999999999999999988653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.49  E-value=3.4e-13  Score=96.82  Aligned_cols=115  Identities=17%  Similarity=0.261  Sum_probs=81.6

Q ss_pred             ccceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHH
Q 022277           32 FCFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLD  111 (300)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~  111 (300)
                      ..+..++..+...++....    .....+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+...             
T Consensus         8 ~v~~~~~~~da~~i~~~~~----~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~-------------   70 (123)
T d1nhpa2           8 NIYLMRGRQWAIKLKQKTV----DPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYL-------------   70 (123)
T ss_dssp             SEECCCHHHHHHHHHHHHT----CTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTC-------------
T ss_pred             CeEEeCCHHHHHHHHHHhh----ccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCccccccc-------------
Confidence            3456677777777766544    22457999999999999999999999999999999987621100             


Q ss_pred             HcCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceE
Q 022277          112 ALGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVT  191 (300)
Q Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~  191 (300)
                          ..++                                      ...+.+.|.+.  |+++++++++++++.++ .+.
T Consensus        71 ----d~~~--------------------------------------~~~~~~~l~~~--gv~~~~~~~v~~i~~~~-~~~  105 (123)
T d1nhpa2          71 ----DKEF--------------------------------------TDVLTEEMEAN--NITIATGETVERYEGDG-RVQ  105 (123)
T ss_dssp             ----CHHH--------------------------------------HHHHHHHHHTT--TEEEEESCCEEEEECSS-BCC
T ss_pred             ----chhh--------------------------------------HHHHHHHhhcC--CeEEEeCceEEEEEcCC-CEE
Confidence                0000                                      01223333333  89999999999998643 333


Q ss_pred             EEEEcCCcEEEcCEEEEc
Q 022277          192 ILELVNGTRIYANIVIGC  209 (300)
Q Consensus       192 ~v~~~~g~~~~ad~vV~A  209 (300)
                       ..+.+|+.+.||.||+|
T Consensus       106 -~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2         106 -KVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             -EEEESSCEEECSEEEEC
T ss_pred             -EEEeCCCEEECCEEEEE
Confidence             33677888999999987

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.49  E-value=2.1e-14  Score=121.74  Aligned_cols=154  Identities=16%  Similarity=0.101  Sum_probs=82.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCCCC-------ceeeEchhHHHHHHHcCCcHHHHhcccccc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSLRTGG-------TSLTLFKNGWSVLDALGVGSDLRSQFLEIK  127 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~g-------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  127 (300)
                      ...+|+|||||++||++|..|.+.|  .+|+|+||++.++...       .........  .......  ..........
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~   78 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTN--PILTTEP--IVGPAALPVY   78 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCC--TTCCCCC--BCCSSSCCBC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccc--ccccccc--cccccccccc
Confidence            3468999999999999999999876  5999999999874210       000000000  0000000  0000000000


Q ss_pred             ceEEE----cCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCC--CCeEEeCCeEEEEEEcCCceEEEEEcCCc--
Q 022277          128 GMAVK----SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLP--PESVQFSSELAKIETSGNGVTILELVNGT--  199 (300)
Q Consensus       128 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~--g~~i~~~~~v~~i~~~~~~~~~v~~~~g~--  199 (300)
                      .-.+.    .........+.... ..........+.++.+.|...+.  +..|+++++|++++.++++ |.|++.+++  
T Consensus        79 ~s~~y~~l~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~-w~Vt~~~~~~~  156 (335)
T d2gv8a1          79 PSPLYRDLQTNTPIELMGYCDQS-FKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS-WVVTYKGTKAG  156 (335)
T ss_dssp             CCCCCTTCBCSSCHHHHSCTTCC-CCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE-EEEEEEESSTT
T ss_pred             ccccchhhhcCCcHhhhhhhhhc-CCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCE-EEEEEEecCCC
Confidence            00000    00000000000000 00111223567777777655442  5689999999999998776 667775432  


Q ss_pred             ----EEEcCEEEEcCCCChHh
Q 022277          200 ----RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       200 ----~~~ad~vV~A~G~~s~~  216 (300)
                          ...+|+||+|+|..|..
T Consensus       157 ~~~~~~~~d~VI~AtG~~s~p  177 (335)
T d2gv8a1         157 SPISKDIFDAVSICNGHYEVP  177 (335)
T ss_dssp             CCEEEEEESEEEECCCSSSSB
T ss_pred             CeEEEEEeeEEEEcccccccc
Confidence                45799999999998844

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.48  E-value=4.3e-13  Score=95.43  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=73.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC---CcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG---IGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKS  133 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G---~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  133 (300)
                      .+.+++|||||++|+.+|..|++.|   .+|+|+|+.+.+.+.-.                  .+               
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d------------------~~---------------   65 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFD------------------HT---------------   65 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSC------------------HH---------------
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccc------------------hH---------------
Confidence            4579999999999999998887654   57999999887632100                  00               


Q ss_pred             CCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEc
Q 022277          134 EDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGC  209 (300)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A  209 (300)
                                             -...+.+.|.+.  |+++++++++++++..+++...|.+++|++++||.||.|
T Consensus        66 -----------------------~~~~l~~~l~~~--GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          66 -----------------------LREELTKQLTAN--GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             -----------------------HHHHHHHHHHHT--TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             -----------------------HHHHHHHHHHhc--CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence                                   112444555554  999999999999998776656699999999999999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.46  E-value=1e-13  Score=99.46  Aligned_cols=109  Identities=24%  Similarity=0.334  Sum_probs=79.2

Q ss_pred             cceeeecchhhHHHHHHhhhhccCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHH
Q 022277           33 CFQTRTRSRSKAIRLSIAKAEADVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDA  112 (300)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~  112 (300)
                      .++.++..+...+.....      ...+++|||||++|+.+|..|++.|.+|+|+|+.+.+.+                 
T Consensus        13 ~~t~~~~~d~~~l~~~~~------~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-----------------   69 (122)
T d1xhca2          13 LLTLRTIFDADRIKESIE------NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-----------------   69 (122)
T ss_dssp             EECCCSHHHHHHHHHHHH------HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-----------------
T ss_pred             eEccCCHHHHHHHHHHhh------cCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-----------------
Confidence            455566777766665544      347999999999999999999999999999999886521                 


Q ss_pred             cCCcHHHHhccccccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEE
Q 022277          113 LGVGSDLRSQFLEIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTI  192 (300)
Q Consensus       113 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~  192 (300)
                        +..++                                      +..+.+.|.+.  |+++++++++++++.  ++   
T Consensus        70 --~d~~~--------------------------------------~~~~~~~l~~~--GV~~~~~~~v~~~~~--~~---  102 (122)
T d1xhca2          70 --LDEEL--------------------------------------SNMIKDMLEET--GVKFFLNSELLEANE--EG---  102 (122)
T ss_dssp             --CCHHH--------------------------------------HHHHHHHHHHT--TEEEECSCCEEEECS--SE---
T ss_pred             --CCHHH--------------------------------------HHHHHHHHHHC--CcEEEeCCEEEEEeC--CE---
Confidence              00110                                      11334444443  999999999988743  33   


Q ss_pred             EEEcCCcEEEcCEEEEcCCC
Q 022277          193 LELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       193 v~~~~g~~~~ad~vV~A~G~  212 (300)
                      + +.+++.+++|.||.|+|.
T Consensus       103 v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         103 V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             E-EETTEEEECSCEEEECCE
T ss_pred             E-EeCCCEEECCEEEEEEEe
Confidence            3 446678999999999994

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.46  E-value=1.6e-13  Score=97.40  Aligned_cols=94  Identities=20%  Similarity=0.287  Sum_probs=68.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+++|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-.                  .+                  
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d------------------~~------------------   63 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYD------------------SE------------------   63 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSC------------------HH------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccccc------------------ch------------------
Confidence            457899999999999999999999999999999987632100                  00                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCC--cEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNG--TRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~ad~vV~A~G  211 (300)
                                          -...+.+.|.+.  |++++++++|++++  ++... +...++  ++++||.||.|+|
T Consensus        64 --------------------~~~~l~~~l~~~--gV~i~~~~~V~~i~--~~~~~-~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          64 --------------------LTAPVAESLKKL--GIALHLGHSVEGYE--NGCLL-ANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             --------------------HHHHHHHHHHHH--TCEEETTCEEEEEE--TTEEE-EECSSSCCCEECCSCEEECCC
T ss_pred             --------------------hHHHHHHHHHhh--cceEEcCcEEEEEc--CCeEE-EEEcCCCeEEEEcCEEEEecC
Confidence                                122344455554  89999999999985  23322 333333  4799999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.46  E-value=2.5e-13  Score=97.51  Aligned_cols=98  Identities=20%  Similarity=0.311  Sum_probs=74.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+.+++|||||+.|+.+|..+++.|.+|+|+|+.+.+.+.-.                  .++                
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d------------------~~~----------------   69 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGAD------------------RDL----------------   69 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSC------------------HHH----------------
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccch------------------hhH----------------
Confidence            3567999999999999999999999999999999987632100                  000                


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC--C--cEEEcCEEEEcCC
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN--G--TRIYANIVIGCDG  211 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--g--~~~~ad~vV~A~G  211 (300)
                                            ...+.+.|.+.  |+++++++++++++.+++++. |.+.+  |  ++++||.|+.|+|
T Consensus        70 ----------------------~~~l~~~l~~~--gv~~~~~~~v~~v~~~~~g~~-v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          70 ----------------------VKVWQKQNEYR--FDNIMVNTKTVAVEPKEDGVY-VTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             ----------------------HHHHHHHHGGG--EEEEECSCEEEEEEEETTEEE-EEEESSSCCSSCEEESCEEECCC
T ss_pred             ----------------------HHHHHHHHHHc--CcccccCcEEEEEEEcCCcEE-EEEEeCCCCeEEEEcCEEEEecC
Confidence                                  12344444443  899999999999999888744 55543  3  3799999999999


Q ss_pred             C
Q 022277          212 I  212 (300)
Q Consensus       212 ~  212 (300)
                      +
T Consensus       125 R  125 (125)
T d1ojta2         125 R  125 (125)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.1e-13  Score=113.13  Aligned_cols=43  Identities=19%  Similarity=0.192  Sum_probs=37.8

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                      |++|+++++|++|..+++++ .|++.+|++++||.||.|.....
T Consensus       221 g~~i~~~~~v~~I~~~~~~v-~v~~~~g~~~~ad~vI~a~p~~~  263 (383)
T d2v5za1         221 GDRVKLERPVIYIDQTRENV-LVETLNHEMYEAKYVISAIPPTL  263 (383)
T ss_dssp             GGGEEESCCEEEEECSSSSE-EEEETTSCEEEESEEEECSCGGG
T ss_pred             CCeEEecCcceEEEecCCeE-EEEECCCCEEECCEEEECCCHHH
Confidence            78999999999999888884 49999999999999999987543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.45  E-value=6.8e-13  Score=94.44  Aligned_cols=95  Identities=21%  Similarity=0.305  Sum_probs=71.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSED  135 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  135 (300)
                      ..+.+++|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..+                 
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~------------------d~~-----------------   64 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGF------------------EKQ-----------------   64 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS------------------CHH-----------------
T ss_pred             hcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccc------------------cch-----------------
Confidence            356799999999999999999999999999999999763210                  011                 


Q ss_pred             CceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEc-CC--cEEEcCEEEEc
Q 022277          136 GRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELV-NG--TRIYANIVIGC  209 (300)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~-~g--~~~~ad~vV~A  209 (300)
                                           -...+.+.|.+.  |++++++++|++++..++++. +.+. +|  +++++|.||+.
T Consensus        65 ---------------------~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~~~~~-v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          65 ---------------------MAAIIKKRLKKK--GVEVVTNALAKGAEEREDGVT-VTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             ---------------------HHHHHHHHHHHT--TCEEEESEEEEEEEEETTEEE-EEEEETTEEEEEEESEEEEC
T ss_pred             ---------------------hHHHHHHHHHhc--CCEEEcCCEEEEEEEcCCEEE-EEEEeCCCEEEEEeEEEEEC
Confidence                                 112344444444  999999999999998888744 5543 44  46999999974

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.45  E-value=2.3e-13  Score=114.36  Aligned_cols=40  Identities=20%  Similarity=0.458  Sum_probs=36.2

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      +...+||||||||++||++|+.|+++|.+|+|+||.+..+
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~g   55 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG   55 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            3457999999999999999999999999999999998653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=7.7e-13  Score=107.14  Aligned_cols=39  Identities=23%  Similarity=0.295  Sum_probs=36.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+||||||||++||+||+.|+++|++|+|||+++.++
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            467999999999999999999999999999999998773

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=8.1e-13  Score=94.59  Aligned_cols=95  Identities=17%  Similarity=0.276  Sum_probs=71.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.+.-.                  .++                 
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d------------------~ei-----------------   66 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMD------------------GEV-----------------   66 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSC------------------HHH-----------------
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhh------------------hhh-----------------
Confidence            467999999999999999999999999999999997732110                  111                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCc-eEEEEEcCC-----cEEEcCEEEEc
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNG-VTILELVNG-----TRIYANIVIGC  209 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~-~~~v~~~~g-----~~~~ad~vV~A  209 (300)
                                           ...+.+.|.+.  |++++++++|++++..+++ .+.+++.++     ++++||.|++|
T Consensus        67 ---------------------~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          67 ---------------------AKATQKFLKKQ--GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ---------------------HHHHHHHHHHT--TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             ---------------------HHHHHHHHHhc--cceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence                                 12334444443  8999999999999987665 344555543     37999999987

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.44  E-value=3.5e-13  Score=112.19  Aligned_cols=36  Identities=33%  Similarity=0.612  Sum_probs=34.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .||+|||||++||++|+.|+++|++|+|+|+++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            489999999999999999999999999999998874

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=8.8e-13  Score=113.26  Aligned_cols=162  Identities=19%  Similarity=0.146  Sum_probs=101.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCcCCCCc-eeeEchhHHHHHHHcCCcHHHHh----ccc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQR------LGIGSLVIEQADSLRTGGT-SLTLFKNGWSVLDALGVGSDLRS----QFL  124 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~------~G~~V~viE~~~~~~~~g~-~~~~~~~~~~~l~~~g~~~~~~~----~~~  124 (300)
                      ..++|||||||||||++||+.|++      .|++|+||||...++.... +..+.+..++.+   ........    ...
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l---~p~~~~~~~~~~~~~  106 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL---FPDWKEKGAPLNTPV  106 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH---CTTHHHHTCCCCEEC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHH---ccchhhhccccccce
Confidence            357999999999999999999998      7999999999998865432 233455554433   11111111    111


Q ss_pred             cccceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceE-EEEEcC----
Q 022277          125 EIKGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVT-ILELVN----  197 (300)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~-~v~~~~----  197 (300)
                      ......+......................+.+.+..+...+.+.+  .++.+..+..+.++..+++++. .+.+.+    
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  186 (380)
T d2gmha1         107 TEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQ  186 (380)
T ss_dssp             CEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEEC
T ss_pred             ecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeeccccccccc
Confidence            122233333333222111111223344566778888888888777  4789999999999988766533 222211    


Q ss_pred             -----------CcEEEcCEEEEcCCCChHhhhhc
Q 022277          198 -----------GTRIYANIVIGCDGIRSPIAKWI  220 (300)
Q Consensus       198 -----------g~~~~ad~vV~A~G~~s~~r~~~  220 (300)
                                 +....++..+++.|....+.+.+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~l  220 (380)
T d2gmha1         187 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQL  220 (380)
T ss_dssp             TTSCEEEEEECCCEEECSEEEECCCTTCHHHHHH
T ss_pred             ccccccccccccccccccEEEEeeeCCCcchHHH
Confidence                       12467899999999887766554

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=7.3e-13  Score=104.24  Aligned_cols=121  Identities=17%  Similarity=0.075  Sum_probs=76.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc-CCCCc--eeeEchhHHHHHHHcCCcHHHHhccccccceEEEcC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL-RTGGT--SLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSE  134 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~-~~~g~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  134 (300)
                      .|||||||||+||+++|+.++|.|.+++||+++... +...+  ........ ...+..+                    
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg-~l~reid--------------------   60 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGS-LLERAYD--------------------   60 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTC-HHHHHCC--------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCc-ceeeeee--------------------
Confidence            589999999999999999999999999999987421 10000  00000000 0000000                    


Q ss_pred             CCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          135 DGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                                   ..++. ..-.|..+.+.+ +..++..++. .+|+++..+++.+.+|.+.+|..+.|+.||+|+|.+.
T Consensus        61 -------------~kG~a-v~a~raQ~k~~l-~~~~nL~i~q-~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          61 -------------PKDER-VWAFHARAKYLL-EGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             -------------TTCCC-HHHHHHHHHHHH-HTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             -------------ccchh-hhhHHHHHHHHH-hhhcCHHHHh-ccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence                         00111 111222333333 3334777764 5688888888888889999999999999999999765


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       125 ~  125 (230)
T d2cula1         125 G  125 (230)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.41  E-value=1.2e-12  Score=93.75  Aligned_cols=97  Identities=18%  Similarity=0.246  Sum_probs=71.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||++|+.+|..|++.|.+|+++|+.+.+.+...                  .                   
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d------------------~-------------------   63 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKD------------------N-------------------   63 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCS------------------H-------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccc------------------c-------------------
Confidence            347999999999999999999999999999999986632110                  0                   


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceE-EEE---EcCCcEEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVT-ILE---LVNGTRIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~---~~~g~~~~ad~vV~A~G  211 (300)
                                         -....+.+.|.+.  ++++++++++++++.++++.+ .+.   ..++++++||+||.|+|
T Consensus        64 -------------------~~~~~~~~~l~~~--gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          64 -------------------ETRAYVLDRMKEQ--GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             -------------------HHHHHHHHHHHHT--TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             -------------------chhhhhhhhhhcc--ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence                               0122344444444  899999999999998876532 222   23446799999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.40  E-value=3.8e-12  Score=107.32  Aligned_cols=40  Identities=35%  Similarity=0.500  Sum_probs=36.5

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...+.+|+|||||++||++|+.|+++|++|+|||+++.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            4466799999999999999999999999999999998774

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.38  E-value=4.7e-12  Score=106.92  Aligned_cols=58  Identities=19%  Similarity=0.069  Sum_probs=43.7

Q ss_pred             HHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          159 RILLETLANQL--PPESVQFSSELAKIETSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       159 ~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ..+...|.+.+  .+++|+.+++++++..+++++.++..   .+|+  .+.|+.||+|+|..+.+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~  222 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccc
Confidence            34555555555  48999999999999998887665544   3564  58899999999988743

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.7e-12  Score=91.57  Aligned_cols=96  Identities=22%  Similarity=0.186  Sum_probs=71.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+++|||||++|+.+|..|++.|.+|+|+|+.+.+.+.-                  ..+                  
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~------------------d~~------------------   64 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSF------------------DSM------------------   64 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS------------------CHH------------------
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccch------------------hhH------------------
Confidence            45799999999999999999999999999999998763210                  000                  


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEE---cCCc------EEEcCEEE
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILEL---VNGT------RIYANIVI  207 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~------~~~ad~vV  207 (300)
                                          -...+.+.|.+.  |+++++++++++++..+++.. ++.   ..|+      .+++|.||
T Consensus        65 --------------------~~~~~~~~l~~~--Gv~i~~~~~v~~i~~~~~g~~-v~~~~~~~g~~~~~~~~~~~D~vl  121 (125)
T d3grsa2          65 --------------------ISTNCTEELENA--GVEVLKFSQVKEVKKTLSGLE-VSMVTAVPGRLPVMTMIPDVDCLL  121 (125)
T ss_dssp             --------------------HHHHHHHHHHHT--TCEEETTEEEEEEEEETTEEE-EEEEECCTTSCCEEEEEEEESEEE
T ss_pred             --------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEcCCeEE-EEEEEccCCcCcCccccccCCEEE
Confidence                                112344445443  999999999999998877632 332   3332      47899999


Q ss_pred             EcCC
Q 022277          208 GCDG  211 (300)
Q Consensus       208 ~A~G  211 (300)
                      .|+|
T Consensus       122 ~a~G  125 (125)
T d3grsa2         122 WAIG  125 (125)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            9998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.37  E-value=2.2e-12  Score=92.47  Aligned_cols=96  Identities=26%  Similarity=0.393  Sum_probs=71.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.+.-                  .+                   
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~------------------d~-------------------   66 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM------------------DA-------------------   66 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS------------------CH-------------------
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchh------------------hh-------------------
Confidence            56799999999999999999999999999999999763210                  01                   


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceE-EEEEcC-C--cEEEcCEEEEcC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVT-ILELVN-G--TRIYANIVIGCD  210 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~-g--~~~~ad~vV~A~  210 (300)
                                         --...+.+.|.+.  |+++++++++++++..++++. .+...+ |  ++++||.|++|.
T Consensus        67 -------------------~~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          67 -------------------EIRKQFQRSLEKQ--GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             -------------------HHHHHHHHHHHHS--SCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             -------------------cchhhhhhhhhcc--cceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence                               1122445555554  899999999999998877743 334433 3  358999999874

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.37  E-value=2.7e-12  Score=105.65  Aligned_cols=133  Identities=23%  Similarity=0.283  Sum_probs=81.4

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCcCCCCc-------eeeEchhHHHHHHHcCCcHHHHhccccc
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQR-LGIGSLVIEQADSLRTGGT-------SLTLFKNGWSVLDALGVGSDLRSQFLEI  126 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~-~G~~V~viE~~~~~~~~g~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~~  126 (300)
                      ...++||+|||||++||++|+.|++ .|++|+|+|+++.++....       ...+.......++.+++.-         
T Consensus        30 ~~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~---------  100 (278)
T d1rp0a1          30 TYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAY---------  100 (278)
T ss_dssp             HHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCC---------
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCce---------
Confidence            3467999999999999999999987 5999999999987742211       1222233333333333210         


Q ss_pred             cceEEEcCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEc--------
Q 022277          127 KGMAVKSEDGRELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELV--------  196 (300)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~--------  196 (300)
                           ...              .........+..+...+.+.+  .+..+..++.+..+...++++..+...        
T Consensus       101 -----~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~  161 (278)
T d1rp0a1         101 -----DEQ--------------DTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNH  161 (278)
T ss_dssp             -----EEC--------------SSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCT
T ss_pred             -----ecC--------------CccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeee
Confidence                 000              001111122333333333322  367788899999888877765544321        


Q ss_pred             ------CCcEEEcCEEEEcCCCChH
Q 022277          197 ------NGTRIYANIVIGCDGIRSP  215 (300)
Q Consensus       197 ------~g~~~~ad~vV~A~G~~s~  215 (300)
                            ++..+.++.||+|+|....
T Consensus       162 ~~~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         162 HTQSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             TTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             cccccccceeeccceEEECcCCCcc
Confidence                  1246899999999997653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.6e-12  Score=98.95  Aligned_cols=39  Identities=31%  Similarity=0.497  Sum_probs=36.3

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+.+|+||||||+||++|+.|+++|++|+|+|+.+.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            345789999999999999999999999999999999987

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=3.3e-12  Score=106.76  Aligned_cols=47  Identities=23%  Similarity=0.156  Sum_probs=37.7

Q ss_pred             CCCeEEeCCeEEEEEEcCCceEEEEE---cCCc--EEEcCEEEEcCCCChHh
Q 022277          170 PPESVQFSSELAKIETSGNGVTILEL---VNGT--RIYANIVIGCDGIRSPI  216 (300)
Q Consensus       170 ~g~~i~~~~~v~~i~~~~~~~~~v~~---~~g~--~~~ad~vV~A~G~~s~~  216 (300)
                      ++++++.+++++++..+++.+.++..   .+|+  .+.|+.||+|||..+.+
T Consensus       148 ~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~  199 (311)
T d1kf6a2         148 PQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  199 (311)
T ss_dssp             TTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred             CcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCcccc
Confidence            47999999999999988887665543   4564  46899999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2.5e-11  Score=86.56  Aligned_cols=96  Identities=20%  Similarity=0.150  Sum_probs=68.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .+.+++|||||++|+.+|..|++.|.+|+|++++... +.                  +..++                 
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l-~~------------------~D~~~-----------------   62 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL-RG------------------FDQDM-----------------   62 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS-TT------------------SCHHH-----------------
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh-cc------------------CCHHH-----------------
Confidence            4579999999999999999999999999999975422 10                  00111                 


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC---ceEEEEEcCC---c--EEEcCEEEE
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN---GVTILELVNG---T--RIYANIVIG  208 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~---~~~~v~~~~g---~--~~~ad~vV~  208 (300)
                                           ...+.+.|.+.  |++|++++.|++++..++   +...+....+   +  ..++|.|+.
T Consensus        63 ---------------------~~~l~~~l~~~--Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~  119 (122)
T d1h6va2          63 ---------------------ANKIGEHMEEH--GIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLL  119 (122)
T ss_dssp             ---------------------HHHHHHHHHHT--TEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEEC
T ss_pred             ---------------------HHHHHHHHHHC--CCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEE
Confidence                                 12344444444  999999999999976432   3344555433   2  467999999


Q ss_pred             cCC
Q 022277          209 CDG  211 (300)
Q Consensus       209 A~G  211 (300)
                      |.|
T Consensus       120 AiG  122 (122)
T d1h6va2         120 AVG  122 (122)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            998

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.1e-11  Score=103.31  Aligned_cols=37  Identities=27%  Similarity=0.447  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+||||||+|++||++|+.+++.| +|+||||.+..
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            45799999999999999999999888 99999999855

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.4e-11  Score=103.84  Aligned_cols=40  Identities=30%  Similarity=0.468  Sum_probs=36.0

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      +.+++||+|||+|++||++|+.++++|.+|+|+||.+..+
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~g   43 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR   43 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            3467999999999999999999999999999999987553

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.24  E-value=7.8e-11  Score=97.88  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .+|+|||||++||+||+.|+++|++|+|||+++.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G   37 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   37 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            579999999999999999999999999999998874

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.2e-10  Score=89.91  Aligned_cols=111  Identities=19%  Similarity=0.290  Sum_probs=70.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      +..||+|||||++||++|+.|+|.|++|+|||+....+....                      ..              
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~----------------------~~--------------   47 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTT----------------------TT--------------   47 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGG----------------------CS--------------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccc----------------------cc--------------
Confidence            568999999999999999999999999999998764311000                      00              


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                       .+       .........+...++.+.+...+  .++.+..+ +|+.+...++. ..+....+ .+.++.+|+++|...
T Consensus        48 -~i-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~-~~v~~~~~-~~~~~~viva~G~~~  116 (190)
T d1trba1          48 -EV-------ENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRP-FRLNGDNG-EYTCDALIIATGASA  116 (190)
T ss_dssp             -BC-------CCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSS-EEEEESSC-EEEEEEEEECCCEEE
T ss_pred             -hh-------hhhhccccccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCc-EEEEEeee-eEeeeeeeeecceee
Confidence             00       00000011133344544444333  26666654 68888777665 43655554 699999999999643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.15  E-value=5.1e-11  Score=92.26  Aligned_cols=115  Identities=19%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      .++||+|||||++|+++|+.|+|.|++|+|+|+.........+                  .+...      ...     
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~------------------~~~~~------~~~-----   54 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGG------------------QLTTT------TDV-----   54 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTC------------------GGGGC------SEE-----
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccccccccc------------------ccccc------hhh-----
Confidence            5689999999999999999999999999999987654211100                  00000      000     


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                .............++...+.+++  .++++..+ +|++++..++. ..+.+.. ..+.+|.++.++|..
T Consensus        55 ----------~~~~~~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~-~~v~~~~-~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          55 ----------ENFPGFPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKP-FKLFTDS-KAILADAVILAIGAV  120 (192)
T ss_dssp             ----------CCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSS-EEEECSS-EEEEEEEEEECCCEE
T ss_pred             ----------hccccccccccchHHHHHHHHHHHhhcceeeee-eEEecccccCc-EEecccc-eeeeeeeEEEEeeee
Confidence                      00001112244556666665544  37788755 68888876665 4355544 468999999999964

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.10  E-value=1.3e-10  Score=89.25  Aligned_cols=107  Identities=14%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ++.+|+|||||++|+.+|..|++.|.+|.|++..+.....-.   ...          +...+......           
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~---~~~----------l~~~~~~~~~~-----------   57 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD---RPP----------LSKDFMAHGDA-----------   57 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC---SGG----------GGTTHHHHCCG-----------
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchh---hHH----------Hhhhhhhhhhh-----------
Confidence            456799999999999999999999998888776654421000   000          00000000000           


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIR  213 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  213 (300)
                                    .        .+...+ ....+++++.+++++++..+...   +.+++|+++.+|.||.|+|..
T Consensus        58 --------------~--------~~~~~~-~~~~~i~~~~~~~v~~i~~~~~~---~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          58 --------------E--------KIRLDC-KRAPEVEWLLGVTAQSFDPQAHT---VALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             --------------G--------GSBCCG-GGSTTCEEEETCCEEEEETTTTE---EEETTSCEEECSEEEECCCEE
T ss_pred             --------------h--------hHHHHH-hhcCCeEEEEeccccccccccce---eEecCCcEeeeeeEEEEEEEE
Confidence                          0        000000 01127899999999998766544   778999999999999999954

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.10  E-value=1.7e-11  Score=97.01  Aligned_cols=37  Identities=32%  Similarity=0.623  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..|||+||||||+|+++|+.+++.|.+|+|||+.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            5799999999999999999999999999999998876

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=9.4e-11  Score=92.24  Aligned_cols=141  Identities=21%  Similarity=0.231  Sum_probs=77.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccc--cccceEEE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFL--EIKGMAVK  132 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~  132 (300)
                      .+++++|||||++|+.+|..|+++|.  +|+++++.+.+...-..+  +             ..+.....  ......+.
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~L--s-------------~~~~~~~~~~~~~~~~~~   67 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPL--S-------------KELWFSDDPNVTKTLRFK   67 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGG--G-------------TGGGCC--CTHHHHCEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcccccc--c-------------eecccccCchhhhhhhhh
Confidence            56899999999999999999999876  599999876542110000  0             00000000  00011111


Q ss_pred             cCCCceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          133 SEDGRELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      ...+... .+.+...    .++ ..... ...+.+  .|++++++++|++++.++..   |.+++|+++.+|.||+|+|.
T Consensus        68 ~~~~~~~-~~~~~~~----~~~-~~~~~-~~~~~~--~gI~~~~g~~V~~id~~~~~---V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          68 QWNGKER-SIYFQPP----SFY-VSAQD-LPHIEN--GGVAVLTGKKVVQLDVRDNM---VKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             CTTSCEE-ESBSSCG----GGS-BCTTT-TTTSTT--CEEEEEETCCEEEEEGGGTE---EEETTSCEEEEEEEEECCCE
T ss_pred             hcccchh-hhhcCCh----hhh-hhhhh-HHHHHH--CCeEEEeCCEEEEeeccCce---eeeccceeeccceEEEeeee
Confidence            1111111 1111100    000 00000 000001  37899999999999776654   78999999999999999995


Q ss_pred             ChH---hhhhcCCCC
Q 022277          213 RSP---IAKWIGFSE  224 (300)
Q Consensus       213 ~s~---~r~~~g~~~  224 (300)
                      ...   +.+..|+..
T Consensus       136 ~~~~~~l~~~~gl~~  150 (213)
T d1m6ia1         136 TEPNVELAKTGGLEI  150 (213)
T ss_dssp             EEECCTTHHHHTCCB
T ss_pred             ecchhhhhhccchhh
Confidence            432   334445543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.05  E-value=8.5e-10  Score=93.44  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH----cCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR----LGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~----~G~~V~viE~~~~~   93 (300)
                      .++||||||+|++||++|+.|++    .|++|+|+||.+..
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            46899999999999999999985    69999999998754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=3.7e-09  Score=80.73  Aligned_cols=111  Identities=26%  Similarity=0.321  Sum_probs=67.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCce
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGRE  138 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  138 (300)
                      |||+||||||+|+++|..+++.|.+|+|||++.    +|...                    ..      ...       
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~----gg~~~--------------------~~------~~~-------   44 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF----GGQIL--------------------DT------VDI-------   44 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSST----TGGGG--------------------GC------CEE-------
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEec----CCccc--------------------cc------ccc-------
Confidence            899999999999999999999999999999753    12100                    00      000       


Q ss_pred             EEEecCCCCCCCcceeeecHHHHHHHHHhcC--CCCeEEeCCeEEEEEEcCC--ceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          139 LRSFGFKDEDASQEVRAVERRILLETLANQL--PPESVQFSSELAKIETSGN--GVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~--~g~~i~~~~~v~~i~~~~~--~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                         ..      ......+.-..+...+....  -+.+......+..+.....  ........++.++.++.++.+.|...
T Consensus        45 ---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  115 (184)
T d1fl2a1          45 ---EN------YISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL  115 (184)
T ss_dssp             ---CC------BTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             ---ee------ccccchhhhHHHHHHHHHHhhheeceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence               00      00111122233433333222  1456666777777765433  22335556667899999999999654


Q ss_pred             H
Q 022277          215 P  215 (300)
Q Consensus       215 ~  215 (300)
                      .
T Consensus       116 ~  116 (184)
T d1fl2a1         116 P  116 (184)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.1e-10  Score=95.73  Aligned_cols=39  Identities=31%  Similarity=0.641  Sum_probs=36.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      .+..+|+|||||++||+||+.|+++|++|+|+|+++.++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG   41 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            356889999999999999999999999999999999874

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.93  E-value=3.9e-09  Score=81.75  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           60 DIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      +|+|||||++|+.+|..|++.  +.+|+++|+.+.+......       ..         .+......            
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~-------~~---------~~l~~~~~------------   53 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAG-------MQ---------LYLEGKVK------------   53 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGG-------HH---------HHHTTSSC------------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccC-------cc---------hhhccccc------------
Confidence            699999999999999999997  4579999998765211110       00         00000000            


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEE-EcCCc--EEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILE-LVNGT--RIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~-~~~g~--~~~ad~vV~A~G~~s  214 (300)
                                 ..........    +.|.+.  |++++++++|++++.+++.+. +. ..+|+  .+.+|.+|.|+|...
T Consensus        54 -----------~~~~~~~~~~----~~l~~~--gi~v~~~~~V~~i~~~~~~v~-~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          54 -----------DVNSVRYMTG----EKMESR--GVNVFSNTEITAIQPKEHQVT-VKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             -----------CGGGSBSCCH----HHHHHT--TCEEEETEEEEEEETTTTEEE-EEETTTCCEEEEECSEEEECCCEEE
T ss_pred             -----------chHHHHHhhH----HHHHHC--CcEEEEeeceeeEeeccccce-eeecccccccccccceeeEeeccee
Confidence                       0000111111    222222  899999999999988776633 43 34443  578999999999653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.92  E-value=5e-10  Score=90.98  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             CCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCC
Q 022277          171 PESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGI  212 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  212 (300)
                      +..+++++.+..+...++.+. |.+.+|+.+++|.++.+...
T Consensus       224 ~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~~d~~~~~~~~  264 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYSPGGVT-VKTEDNSVYSADYVMVSASL  264 (347)
T ss_dssp             CTTEESSCCEEEEEECSSCEE-EEETTSCEEEESEEEECSCH
T ss_pred             ccccccccccccccccCccEE-EEECCCCEEEcCEEEeecCH
Confidence            568999999999998887744 89999999999999998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=7e-09  Score=77.87  Aligned_cols=113  Identities=14%  Similarity=0.162  Sum_probs=67.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCceE
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGREL  139 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  139 (300)
                      +|+|||||++|+.+|..|++ +.+|+|+|+.+.+.....      ...+.+          .....              
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~------~~~~~~----------~~~~~--------------   50 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKP------MLSHYI----------AGFIP--------------   50 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCST------THHHHH----------TTSSC--------------
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccccc------chhhhh----------hhhhh--------------
Confidence            79999999999999999965 779999998875521110      000000          00000              


Q ss_pred             EEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh-Hhhh
Q 022277          140 RSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS-PIAK  218 (300)
Q Consensus       140 ~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s-~~r~  218 (300)
                                .... ......   .+.+.  +++++++++++.++... .   +.+.++.++.+|.+|.|+|... .+.+
T Consensus        51 ----------~~~~-~~~~~~---~~~~~--~v~~~~~~~v~~i~~~~-~---~~~~~~~~i~~D~li~a~G~~~~~~~~  110 (167)
T d1xhca1          51 ----------RNRL-FPYSLD---WYRKR--GIEIRLAEEAKLIDRGR-K---VVITEKGEVPYDTLVLATGAPNVDLAR  110 (167)
T ss_dssp             ----------GGGG-CSSCHH---HHHHH--TEEEECSCCEEEEETTT-T---EEEESSCEEECSEEEECCCEECCHHHH
T ss_pred             ----------hhhh-hHHHHH---HHHhc--cceeeeecccccccccc-c---cccccccccccceeEEEEEecCCchhh
Confidence                      0000 000011   11122  78999999999886432 3   4455666899999999999753 3334


Q ss_pred             hcCCC
Q 022277          219 WIGFS  223 (300)
Q Consensus       219 ~~g~~  223 (300)
                      ..|+.
T Consensus       111 ~~gl~  115 (167)
T d1xhca1         111 RSGIH  115 (167)
T ss_dssp             HTTCC
T ss_pred             hcCce
Confidence            44544

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=9.7e-10  Score=90.88  Aligned_cols=37  Identities=35%  Similarity=0.530  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ++||||||||++||++|+.|++.|.+|+|+|+++.++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            3799999999999999999999999999999999884

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.82  E-value=1.8e-09  Score=85.27  Aligned_cols=37  Identities=30%  Similarity=0.574  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ++|||+||||||+||++|+.+++.|++|+|||+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            6799999999999999999999999999999997654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.82  E-value=8.1e-09  Score=76.71  Aligned_cols=36  Identities=14%  Similarity=0.132  Sum_probs=31.8

Q ss_pred             CCcEEEE--CCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIV--GAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvII--GgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...|+|+  |||..|+++|..|+++|.+|+|+|+.+.+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            4556665  99999999999999999999999998865

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.81  E-value=2.4e-09  Score=81.48  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG--IGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G--~~V~viE~~~~~   93 (300)
                      .+|+|||||++|+++|..|.+.|  .+|+|+|+++..
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            58999999999999999999987  479999998854

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=1.3e-09  Score=86.45  Aligned_cols=37  Identities=32%  Similarity=0.650  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ++|||+||||||+|+++|..|++.|.+|+|+|+.+..
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            6799999999999999999999999999999998765

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.79  E-value=2.2e-09  Score=86.54  Aligned_cols=35  Identities=26%  Similarity=0.560  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|||||++||++|+.|+++|.+|+||||..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45789999999999999999999999999999975

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.77  E-value=2.5e-09  Score=84.84  Aligned_cols=37  Identities=24%  Similarity=0.489  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|||+||||||+||++|..|++.|++|+|||+.+.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            4699999999999999999999999999999998865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.73  E-value=5.5e-09  Score=80.54  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSLR   94 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~~   94 (300)
                      ...+|+|||||++||++|..|+++|+ +|+|+||.+..+
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            46799999999999999999999999 599999998763

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.4e-09  Score=83.27  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ++|||+|||||++|+++|..+++.|.+|+|+|+..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            36899999999999999999999999999999864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.73  E-value=5.1e-09  Score=87.07  Aligned_cols=37  Identities=32%  Similarity=0.515  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ..+|+|||||++||++|+.|++.|++|+|+|+++.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            4689999999999999999999999999999999884

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.68  E-value=2.7e-08  Score=75.71  Aligned_cols=111  Identities=16%  Similarity=0.218  Sum_probs=67.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDGR  137 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (300)
                      ..+|+|||||++|+.+|..|++.|.+|+|++..+.+......                 ..+......            
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~-----------------~~~~~~~~~------------   53 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL-----------------PPLSKAYLA------------   53 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS-----------------GGGGTTTTT------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhh-----------------hHHHHHHHH------------
Confidence            468999999999999999999999999998888754211100                 000000000            


Q ss_pred             eEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcCCcEEEcCEEEEcCCCCh
Q 022277          138 ELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVNGTRIYANIVIGCDGIRS  214 (300)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~s  214 (300)
                              ............ .....    . .+..+..+..++.+..+...   +...++.++.+|.+|.|+|..+
T Consensus        54 --------~~~~~~~~~~~~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~---v~~~~~~~i~~d~~i~~~G~~~  113 (185)
T d1q1ra1          54 --------GKATAESLYLRT-PDAYA----A-QNIQLLGGTQVTAINRDRQQ---VILSDGRALDYDRLVLATGGRP  113 (185)
T ss_dssp             --------TCSCSGGGBSSC-HHHHH----H-TTEEEECSCCEEEEETTTTE---EEETTSCEEECSEEEECCCEEE
T ss_pred             --------hhhhhhhhhhhh-hhhhc----c-cceeeeccceeeeecccccE---EEeeceeEEEeeeeeeeeeccc
Confidence                    000000000000 01111    1 14567777777777665544   7788888999999999999743

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=5.7e-09  Score=82.95  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      -.|||+||||||+|+++|..+++.|++|+|+|+.+..
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            3699999999999999999999999999999987753

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=4.4e-08  Score=81.18  Aligned_cols=40  Identities=28%  Similarity=0.441  Sum_probs=35.8

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSLR   94 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~~   94 (300)
                      ....+||+||||||+||++|+.|+++  |++|+|+|+++.++
T Consensus        47 ~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          47 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            34578999999999999999999975  99999999998874

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=5.2e-09  Score=83.23  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-------CcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLG-------IGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G-------~~V~viE~~~~~   93 (300)
                      +++|+||||||+||+||+.|+++|       ++|+|+|+.+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            479999999999999999999988       479999999987

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.66  E-value=8.6e-09  Score=81.07  Aligned_cols=35  Identities=26%  Similarity=0.521  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .++||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            46999999999999999999999999999999876

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.64  E-value=8.1e-08  Score=81.99  Aligned_cols=35  Identities=43%  Similarity=0.635  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~   91 (300)
                      +.||+||||||.+|+.+|..|++.+ ++|+|||+.+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            4699999999999999999999976 8999999985

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.62  E-value=1.8e-08  Score=79.97  Aligned_cols=39  Identities=28%  Similarity=0.429  Sum_probs=36.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ....+|+|||||++||++|..|+++|++|+|+|+.+.++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            456899999999999999999999999999999999873

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.59  E-value=1.5e-08  Score=79.65  Aligned_cols=35  Identities=26%  Similarity=0.548  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .++|++|||||++|+++|..+++.|.+|+|+|+..
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            57999999999999999999999999999999874

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.9e-08  Score=79.03  Aligned_cols=34  Identities=32%  Similarity=0.532  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .|||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            5999999999999999999999999999999865

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.56  E-value=2.1e-08  Score=85.08  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..++||||||+|++|+.+|..|++.|++|+|||+....
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            36799999999999999999999999999999997643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.53  E-value=3.2e-08  Score=78.21  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRL--GIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~--G~~V~viE~~~~~   93 (300)
                      .+|+|||||||||+||..|+++  |++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4899999999999999999886  7799999999987

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.48  E-value=5.9e-08  Score=78.18  Aligned_cols=33  Identities=24%  Similarity=0.482  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      |||+|||||++|+.+|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=2.3e-07  Score=69.00  Aligned_cols=28  Identities=29%  Similarity=0.466  Sum_probs=25.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcE
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGS   84 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V   84 (300)
                      ...+|+|||||..|+.+|..+.+.|.++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            4579999999999999999999999754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.40  E-value=1.7e-07  Score=75.47  Aligned_cols=38  Identities=26%  Similarity=0.426  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+||++|||||++|+.+|..+++.|.+|+|+|+.+.+
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l   77 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   77 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            35799999999999999999999999999999998876

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.40  E-value=1.3e-07  Score=74.82  Aligned_cols=35  Identities=31%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      +.|||+||||||+|+++|..+++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            67999999999999999999999987 688988764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.37  E-value=1.3e-07  Score=80.22  Aligned_cols=35  Identities=23%  Similarity=0.509  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .++||||||+|++|+.+|..|+++|++|+|||+..
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            57999999999999999999999999999999863

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.36  E-value=1.2e-07  Score=75.43  Aligned_cols=37  Identities=30%  Similarity=0.410  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      ++|||+||||||+|+++|..+++.|. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            67999999999999999999999986 59999987753

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=3.2e-06  Score=59.70  Aligned_cols=93  Identities=18%  Similarity=0.297  Sum_probs=69.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||-..+..|..|++..-+|+++-|.+.+...                                        
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~----------------------------------------   65 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE----------------------------------------   65 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC----------------------------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccch----------------------------------------
Confidence            5689999999999999999999999999999998865210                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhc--CCCCeEEeCCeEEEEEEcCCceEEEEEcCC------cEEEcCEEEE
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQ--LPPESVQFSSELAKIETSGNGVTILELVNG------TRIYANIVIG  208 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~--~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g------~~~~ad~vV~  208 (300)
                                            ..+.+.+.+.  ..++.+++++++.++.-++.++..|++.+.      +++.+|-|++
T Consensus        66 ----------------------~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv  123 (126)
T d1trba2          66 ----------------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFV  123 (126)
T ss_dssp             ----------------------HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEE
T ss_pred             ----------------------hHHHHHHHHhhcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEE
Confidence                                  0112222221  136788899999999887666666777653      3588999998


Q ss_pred             cCC
Q 022277          209 CDG  211 (300)
Q Consensus       209 A~G  211 (300)
                      +-|
T Consensus       124 ~iG  126 (126)
T d1trba2         124 AIG  126 (126)
T ss_dssp             CSC
T ss_pred             EeC
Confidence            876

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.33  E-value=5.6e-06  Score=60.51  Aligned_cols=37  Identities=19%  Similarity=0.329  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-EEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIG-SLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~-V~viE~~~~~   93 (300)
                      ...+|+|||||-+|+-+|..+.+.|.+ |+++.|.+..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            346899999999999999999999875 8899987754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.30  E-value=2.5e-07  Score=78.20  Aligned_cols=33  Identities=24%  Similarity=0.501  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .||||||+|++|+.+|+.|+++|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            589999999999999999999999999999964

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=5.9e-06  Score=58.26  Aligned_cols=92  Identities=18%  Similarity=0.330  Sum_probs=70.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||-..+..|..|++..-+|+++-|.+.+...                                        
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~----------------------------------------   68 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD----------------------------------------   68 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSC----------------------------------------
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccc----------------------------------------
Confidence            5789999999999999999999998899999988755210                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCCceEEEEEcC---Cc--EEEcCEEEEcCC
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGNGVTILELVN---GT--RIYANIVIGCDG  211 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---g~--~~~ad~vV~A~G  211 (300)
                                            ..+.+.+. ..++++++++++++++.-+++.+..+++.+   |+  ++.+|-|.++-|
T Consensus        69 ----------------------~~~~~~~~-~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          69 ----------------------QVLQDKLR-SLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             ----------------------HHHHHHHH-TCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ----------------------cccccccc-cccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence                                  02222222 224789999999999988766666677754   43  689999999887

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.26  E-value=3.2e-07  Score=77.46  Aligned_cols=34  Identities=35%  Similarity=0.523  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .||+||||+|.+|+.+|..|++.|.+|+|||+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5899999999999999999999999999999984

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.18  E-value=1.1e-07  Score=75.34  Aligned_cols=30  Identities=30%  Similarity=0.470  Sum_probs=27.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQ   89 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~   89 (300)
                      +|+|||||++||++|+.|+++|.+|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            699999999999999999999988766665

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.12  E-value=1.1e-06  Score=74.99  Aligned_cols=36  Identities=36%  Similarity=0.505  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~   92 (300)
                      +.||+||||||.+|+.+|..|++.| ++|+|||+.+.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999998 79999999863

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.96  E-value=1.6e-06  Score=72.71  Aligned_cols=35  Identities=34%  Similarity=0.452  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..||+||||+|.+|+.+|..|++. ++|+|||+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            459999999999999999999986 99999999863

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=2.3e-06  Score=67.38  Aligned_cols=33  Identities=30%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcC---CcEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLG---IGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G---~~V~viE~~~   91 (300)
                      .+|+||||||+|+++|..+++.|   .+|+|+|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            58999999999999999988865   5799999854

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.79  E-value=0.00018  Score=50.52  Aligned_cols=90  Identities=19%  Similarity=0.324  Sum_probs=66.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceeeEchhHHHHHHHcCCcHHHHhccccccceEEEcCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLTLFKNGWSVLDALGVGSDLRSQFLEIKGMAVKSEDG  136 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (300)
                      ...+|+|||||-+.+..|..|++.--+|+++-|.+.++..                                        
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~----------------------------------------   72 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS----------------------------------------   72 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC----------------------------------------
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccc----------------------------------------
Confidence            6789999999999999999999999999999998876210                                        


Q ss_pred             ceEEEecCCCCCCCcceeeecHHHHHHHHHhcCCCCeEEeCCeEEEEEEcCC--ceEEEEEcC---C--cEEEcCEEEEc
Q 022277          137 RELRSFGFKDEDASQEVRAVERRILLETLANQLPPESVQFSSELAKIETSGN--GVTILELVN---G--TRIYANIVIGC  209 (300)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~g~~i~~~~~v~~i~~~~~--~~~~v~~~~---g--~~~~ad~vV~A  209 (300)
                                            ..+.+.+. ..+++++++++++.++.-++.  .+..+.+.+   +  +++.+|-|.+|
T Consensus        73 ----------------------~~~~~~l~-~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          73 ----------------------KIMQQRAL-SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             ----------------------HHHHHHHH-TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ----------------------hhhhhccc-cCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence                                  02223332 234789999999999987653  344455433   3  36888888765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.74  E-value=9.6e-05  Score=50.19  Aligned_cols=36  Identities=11%  Similarity=0.123  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||+|.+|+-.|..|++.+-+++++-+.+.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            468999999999999999999998888777766553

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=3.4e-05  Score=51.11  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|+|+|.|.+|+++|..|.+.|.+|+++|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            468999999999999999999999999999987754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.57  E-value=2.8e-05  Score=58.43  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..++|||+|..|+.+|..|+++|++|.+++|++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5799999999999999999999999999999763

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.55  E-value=2.9e-05  Score=57.97  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...|+|||||.+|..+|..|.+.|++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            35799999999999999999999999999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=7.7e-05  Score=54.91  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+|+|||+|..|..+|..|++.|++|++++|.+..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            37999999999999999999999999999998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.38  E-value=7.6e-05  Score=52.82  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            699999999999999999999999999999874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0001  Score=55.76  Aligned_cols=36  Identities=17%  Similarity=0.397  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .-.+|.|||+|..|...|..++++|++|+++|+++.
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            457899999999999999999999999999998874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.24  E-value=0.00033  Score=51.71  Aligned_cols=37  Identities=22%  Similarity=0.450  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+.+|+|||||.+|+.+|....+.|..|.++|.+...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            4679999999999999999999999999999998754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.18  E-value=0.00016  Score=54.43  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.|||+|..|...|..+++.|++|+++|+++.
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            346799999999999999999999999999998764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.18  E-value=0.00016  Score=51.15  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+++|||+|-.|..+|..|.+.|++|+++|+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            3689999999999999999999999999999864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.12  E-value=0.00029  Score=51.26  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+.+|+|||+|.+|+.++..+.+.|.+|+++|.+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            468999999999999999999999999999998763

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.10  E-value=0.00019  Score=54.67  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||.|..|+.+|..|++.|++|+.+|.+..
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            589999999999999999999999999998753

>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.09  E-value=0.00079  Score=47.04  Aligned_cols=57  Identities=21%  Similarity=0.199  Sum_probs=43.3

Q ss_pred             CccccceEEEEEeeCCCCCC-----CCCceEEEEeCCeEEEEEEcCCC-----eEEEEEEEcCCCCC
Q 022277          225 PKYVGHCAYRGLGYYPNGQP-----FEPKLNYIYGRGVRAGYVPVSPT-----KVYWFICHNNPTPG  281 (300)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~~~~~~~~~  281 (300)
                      |.|+|+++||++++.+.-.+     +.....++++++.|++.||++.+     +..|++++.+..+.
T Consensus         1 P~yaG~vAwRglv~~~~l~~~~~~~~~~~~~~~~g~~~h~v~YpI~g~~~~~~~~~N~V~~~~~~~~   67 (128)
T d2voua2           1 PTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEG   67 (128)
T ss_dssp             CEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECCTT
T ss_pred             CcccCeEEEEEEeehHHCCHhHHhhccCceEEEEcCCceEEEEEecCCCCCCcceEEEEEEEeCCCc
Confidence            67999999999998765322     34567889999999999999643     36677777765544

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.82  E-value=0.00074  Score=48.85  Aligned_cols=38  Identities=11%  Similarity=0.257  Sum_probs=33.5

Q ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           55 DVRKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        55 ~~~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..++.+|.|||+|-.|.++|+.|...++ ++.++|.++.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            4467899999999999999999999887 7999998764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.75  E-value=0.00082  Score=48.09  Aligned_cols=35  Identities=23%  Similarity=0.521  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      .+.+|.|||+|-.|.++|+.|+..|+  ++.++|++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            46799999999999999999999985  799999876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.74  E-value=0.001  Score=47.85  Aligned_cols=36  Identities=31%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|.||| .|..|.+.|..|.+.|++|.++|+...
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            557999999 699999999999999999999998764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.71  E-value=0.00047  Score=51.80  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|+|||||.-|.++|..|++.|.+|+++.|++.
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            45899999999999999999999999999998753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00057  Score=49.23  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ...+|+|||||..|+.-|..|.+.|.+|+|+...
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999999999999999999999644

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.63  E-value=0.001  Score=48.65  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||.|..|.+.|..|.+.|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999999875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.60  E-value=0.0014  Score=44.59  Aligned_cols=36  Identities=28%  Similarity=0.189  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||||.+|..-|..|.+.|.+|+|+.....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            467999999999999999999999999999986653

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=0.0015  Score=55.93  Aligned_cols=46  Identities=17%  Similarity=0.281  Sum_probs=40.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCCCCceee
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSLRTGGTSLT  101 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~~~~g~~~~  101 (300)
                      +..+||||+|-|+.=+.+|..|++.|.+|+-+|+++.-+...+++.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~   49 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS   49 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccccee
Confidence            4689999999999999999999999999999999998755444443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.43  E-value=0.0014  Score=48.76  Aligned_cols=32  Identities=28%  Similarity=0.249  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|.|||+|..|.++|..|++.|.+|.++.|..
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~   33 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEF   33 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            68999999999999999999999999997643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.39  E-value=0.0016  Score=46.61  Aligned_cols=36  Identities=28%  Similarity=0.531  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      ...+|.|||+|-.|.++|+.|...|+  ++.++|..+.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            45789999999999999999999987  6999997763

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0026  Score=46.50  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..-.|+|+|+|+.|+.++..+...|.+|+++++++.-
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k   63 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhH
Confidence            4568999999999999888888889999999998753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.002  Score=47.27  Aligned_cols=37  Identities=19%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      ..-.|+|+|+|+.|+.++..+...|. +|+++|+++..
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~r   63 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR   63 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHH
Confidence            44679999999999999999999998 79999988743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.25  E-value=0.0019  Score=47.31  Aligned_cols=36  Identities=17%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..-.|+|+|+|+.|+.++..+...|.+|+++|+++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            446799999999999999999889999999998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0038  Score=42.12  Aligned_cols=37  Identities=22%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|.|+|||--|-.+|....+.|++|.++|.++..
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            4468999999999999999999999999999988754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.11  E-value=0.002  Score=48.40  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|.|||.|..||.+|..++ .|++|+.+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            6899999999999999886 5999999998764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.09  E-value=0.0036  Score=44.38  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      .+|.|||+|-.|.++|+.|...|+  ++.++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            579999999999999999999988  799999775

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.09  E-value=0.0024  Score=47.66  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=30.0

Q ss_pred             cEEEE-CCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIV-GAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvII-GgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|+|| |+|-.|.++|..|++.|++|+|..|++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999 6699999999999999999999998763

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.07  E-value=0.0036  Score=44.36  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      .+|.|||+|-.|.++|+.|+..++ ++.++|....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            479999999999999999999887 8999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.06  E-value=0.028  Score=42.89  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQR--------------------LGI-GSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~--------------------~G~-~V~viE~~~~~   93 (300)
                      ..+|+|||+|-+++=+|..|.+                    .|. +|.++.|+...
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            5799999999999999999988                    365 79999988743

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.01  E-value=0.0043  Score=44.82  Aligned_cols=35  Identities=23%  Similarity=0.450  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ...+|.|||+|-.|.++|+.|...|+  ++.++|.+.
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            45799999999999999999999998  799999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.98  E-value=0.0035  Score=44.62  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      .+|.|||+|-.|.++|+.|..+|+  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            579999999999999999999886  799999765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.98  E-value=0.0032  Score=45.89  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|+|+|+.|+.++..+...|.+|+++++++.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            456799999999999999988888999999998763

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.93  E-value=0.0049  Score=43.61  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~   93 (300)
                      .+|.|||+|-.|.++|+.|...|+  ++.++|.....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            479999999999999999999987  79999987753

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.92  E-value=0.0051  Score=45.25  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..+|-|||-|..|..+|..|.+.|++|.+++|.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            35799999999999999999999999999999874

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.92  E-value=0.0051  Score=43.54  Aligned_cols=34  Identities=24%  Similarity=0.481  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCCc
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADSL   93 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~~   93 (300)
                      +|.|||+|-.|.++|+.|...|+  ++.++|.++..
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~   37 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGI   37 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccccc
Confidence            69999999999999999999986  89999988753

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0058  Score=44.08  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      ...+|.|||+|-.|.++|+.|...|+  ++.++|.+.
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            34689999999999999999999987  799999775

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.77  E-value=0.0074  Score=43.07  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..+|.|||+|-.|.++|+.|...++ ++.++|..+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            4689999999999999999998887 7999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0077  Score=43.85  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..-.|+|+|+|..|+.++..+...|.+++++++...
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            456899999999999999888888999999998764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.012  Score=42.81  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|+|+|-++-++++.|.+.|.+|.|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            45799999999999999999999999999999876

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0088  Score=42.75  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +-.++|+|.|..|..++..|.+.|.+|+|+|..+.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            34699999999999999999999999999998763

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.0046  Score=45.77  Aligned_cols=36  Identities=33%  Similarity=0.455  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..-.|+|+|+|+.|+.+...+...|. +|+++|+++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccc
Confidence            34689999999999999999999998 7999998764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.59  E-value=0.0046  Score=44.81  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|-|||-|..|...|..|.++|++|.++|+.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            589999999999999999999999999998864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.54  E-value=0.0061  Score=43.23  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      +|+|||| |..|.++|+.|...|+  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6899996 9999999999999987  699999764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.53  E-value=0.0063  Score=44.08  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|.|||-|..|...|..|.++|++|.++|++..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            3699999999999999999999999999998864

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.49  E-value=0.0072  Score=42.72  Aligned_cols=33  Identities=21%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      +|.|||+|-.|.++|+.|...|+  ++.++|.++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            78999999999999999999887  6999997763

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.48  E-value=0.0072  Score=42.85  Aligned_cols=33  Identities=33%  Similarity=0.481  Sum_probs=29.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      +|.|||| |..|.++|+.|...|+  ++.++|....
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            6999996 9999999999999996  8999998754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.41  E-value=0.014  Score=42.74  Aligned_cols=36  Identities=17%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..-.|+|+|+|+.|+.++..+...|. +|++.|.++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            45689999999999999999999998 5778887764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.37  E-value=0.0074  Score=44.28  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ...-.|+|+|+|+.|+.++..+...|. +|+++|+++.
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            345689999999999999999998997 7999998763

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0075  Score=37.59  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..|.|+|||--|-+++....+.|++|.+++..+..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            46899999999999999999999999999987654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.36  E-value=0.00035  Score=54.40  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..+|+|||||..|+.+|..|++.|.+|+++++.+..
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            468999999999999999999999999999999865

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.26  E-value=0.012  Score=43.23  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|-|||-|..|...|..|.+.|++|.+++|+..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            3689999999999999999999999999998763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.24  E-value=0.0098  Score=41.89  Aligned_cols=32  Identities=34%  Similarity=0.449  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      +|.|||+|-.|.++|+.|...++  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            68999999999999999998876  799999775

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.0084  Score=46.66  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            4799999999999999999999999 799999665

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.20  E-value=0.011  Score=42.90  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGI--GSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~--~V~viE~~~~   92 (300)
                      .|.|||.|..|.+.|..|.+.|+  +|..+|++..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            59999999999999999999997  5777888763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.20  E-value=0.012  Score=42.81  Aligned_cols=35  Identities=11%  Similarity=0.261  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|+|+|-++-++++.|.+.|. +|.|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            45789999999999999999999997 799998875

>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.14  E-value=0.017  Score=38.78  Aligned_cols=50  Identities=14%  Similarity=0.100  Sum_probs=34.1

Q ss_pred             ccccceEEEEEeeCCCCCCCCCceEEEEeCCeEEEEEEcCCC------eEEEEEEE
Q 022277          226 KYVGHCAYRGLGYYPNGQPFEPKLNYIYGRGVRAGYVPVSPT------KVYWFICH  275 (300)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~  275 (300)
                      .|.|+.+||++++.+..........+..+++.+++.||+.++      ++.|++.+
T Consensus         1 ~~~G~~aWRg~v~~~~~~~g~s~v~~~~g~~~~~V~YPi~~~~~~~G~~liN~Va~   56 (111)
T d3c96a2           1 SHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCM   56 (111)
T ss_dssp             EEEEEEEEEEEEEESCCTTSSEEEEEECTTCCEEEEEECCHHHHTTTCEEEEEEEE
T ss_pred             CccCEEEEeeeEEcCCCCCCCCEEEEecCCCceEEEEecCCCCCCCcceeEEEEEE
Confidence            367999999999876543333223333446889999999665      56666665

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.83  E-value=0.014  Score=41.53  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      +|.|||.|-.|...|..|.++|++|+++++.+..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~   35 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSP   35 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhH
Confidence            6899999999999999999999999999877643

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.018  Score=43.21  Aligned_cols=36  Identities=31%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|+|| |..|-.++..|.++|++|+++.|++.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            3567999996 99999999999999999999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.81  E-value=0.013  Score=43.77  Aligned_cols=37  Identities=30%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ...-+|+|+|+|+.|+.++..+...|. +|+++|.++.
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            345689999999999999998888877 7888887653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.71  E-value=0.011  Score=42.74  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|+|+|+.|+.++..+...|.+|++++.++.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            456899999999999999888889999999997663

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.62  E-value=0.017  Score=42.26  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      ..-.|+|+|+|+.|+.+...+...|. +|+++|.++.-
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            34569999999999999999999995 79999988754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.024  Score=38.75  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGI-----------AGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~-----------aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|+|+|+           ++..++..|++.|++++++.-++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            567899999996           6889999999999999999998864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.56  E-value=0.029  Score=40.95  Aligned_cols=37  Identities=14%  Similarity=0.204  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      ..-.|+|+|+|+.|+.+...+...|. +|+++|.++.-
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            44579999999999999999999997 68898887643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.49  E-value=0.021  Score=45.34  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ++.+|+|+|| |..|..++..|.++|++|+++.|...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            4567999997 99999999999999999999988754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.046  Score=36.81  Aligned_cols=37  Identities=16%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGI-----------AGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~-----------aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...+|+|||+|+           ++..++..|++.|++++++.-++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            457899999994           6889999999999999999998864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.033  Score=40.92  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      ...+|+|+|+|-+|-++++.|.+.|. +++|+.|....
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            45799999999999999999999998 68999988643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.22  E-value=0.025  Score=44.58  Aligned_cols=37  Identities=22%  Similarity=0.406  Sum_probs=33.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .+.+|+|+|| |..|-.++..|.+.|++|+++.|.+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            3578999998 999999999999999999999997643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.05  E-value=0.046  Score=39.66  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      ..-.|+|+|+|+.|+.++..+++.|. +|+++++.+.-
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            34568899999999999999999876 68888887743

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.98  E-value=0.032  Score=39.15  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=28.1

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCC--cEEEEecCC
Q 022277           60 DIVIVG-AGIAGLATAVSLQRLGI--GSLVIEQAD   91 (300)
Q Consensus        60 dVvIIG-gG~aGl~~A~~L~~~G~--~V~viE~~~   91 (300)
                      +|.||| +|-.|.++|+.|...|+  ++.++|...
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~   36 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD   36 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            689999 69999999999999987  689998643

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.066  Score=38.26  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|||-|..|-.+|..|+..|.+|+++|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            45789999999999999999999999999999886

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.70  E-value=0.068  Score=39.45  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|.| +|-+|..+|..|+++|.+|+++.|+..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            467889998 589999999999999999999999863

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.67  E-value=0.054  Score=39.33  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=28.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCcE-EEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGIGS-LVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~~V-~viE~~~   91 (300)
                      ....+|+|+|+|+.|+.++..+...|.++ ++.+.++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            34568999999999999999998889865 4556554

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.66  E-value=0.065  Score=38.17  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....++|+|=|..|--+|..|+..|.+|+|.|.++
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            45799999999999999999999999999999988

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.62  E-value=0.045  Score=39.20  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      -....|+|||+|-+|-.+|..|...|. +++|+-|..
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            356889999999999999999999998 599988774

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.59  E-value=0.032  Score=39.66  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ++.|||+|-.|.+.|..|.+.|.++++.+|+.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            68999999999999999999999999999875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.38  E-value=0.036  Score=40.29  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|+|+|-++-++++.|.+.+.+|+|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            45789999999999999999999888999999886

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.26  E-value=0.046  Score=38.76  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 022277           60 DIVIVGAGIAGLATAVSLQRLG-IGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G-~~V~viE~~~~   92 (300)
                      +|.+||+|-.|.+.|..|.+.| .+|.+++|++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            6899999999999999998887 89999998863

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.051  Score=38.23  Aligned_cols=32  Identities=28%  Similarity=0.331  Sum_probs=26.4

Q ss_pred             cEEEEC-CCHHHHHHHHHHHH-cC--CcEEEEecCC
Q 022277           60 DIVIVG-AGIAGLATAVSLQR-LG--IGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIG-gG~aGl~~A~~L~~-~G--~~V~viE~~~   91 (300)
                      +|.||| +|-.|.++|+.|.. .+  -++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            789999 59999999999864 34  4899999754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.038  Score=46.40  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..+|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4699999999999999999999999 899999865

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.09  E-value=0.077  Score=38.61  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|+|+|-++-++++.|.+.| +|.|+-|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            5679999999999999999998877 899998875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.70  E-value=0.11  Score=37.52  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=29.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ..-.|+|+|+|+.|+.++..+...|. .|++.++++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            34679999999999999998888886 667778775

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.61  E-value=0.038  Score=43.19  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .+|+|.|| |..|-.++..|.++|++|+.+++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999998 9999999999999999999999875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.45  E-value=0.061  Score=34.84  Aligned_cols=37  Identities=30%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCCHHHHHH-HHHHHHcCCcEEEEecCCC
Q 022277           56 VRKEDIVIVGAGIAGLAT-AVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~-A~~L~~~G~~V~viE~~~~   92 (300)
                      ....++-+||-|-+|+++ |..|.++|++|+--|+...
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            356789999999999877 9999999999999998754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.39  E-value=0.07  Score=38.68  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      .-.|+|+|+|..|+.++..++..|. +|++++.++.-
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            3569999999999999999999985 88888887753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.32  E-value=0.069  Score=40.36  Aligned_cols=36  Identities=11%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||+|-.|+-+|..|++.+.+++++=+...
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            468999999999999999999999998888776653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=0.048  Score=47.21  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~   91 (300)
                      ...+|+|||+|..|..+|..|...|+ +++|+|.+.
T Consensus        24 ~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          24 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            45799999999999999999999998 799999664

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.74  E-value=0.074  Score=38.28  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=30.0

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..-.|+|+|+ |+.|+.++..+...|. +|+++++++.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchh
Confidence            4457999995 9999999999988885 8999997763

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.50  E-value=0.13  Score=37.12  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~   92 (300)
                      ..-.|+|+|+|..|+.+...+...|. .|++.+.++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~   64 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHH
Confidence            44578999999999999998888996 5666776553

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.44  E-value=0.12  Score=41.98  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=31.8

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +..+|+|.| .|..|..++..|.++|++|+++++...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            456799998 799999999999999999999987653

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.18  E-value=0.24  Score=37.21  Aligned_cols=38  Identities=24%  Similarity=0.460  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCc
Q 022277           56 VRKEDIVIVGAGIAGLATAVSLQRLGI-GSLVIEQADSL   93 (300)
Q Consensus        56 ~~~~dVvIIGgG~aGl~~A~~L~~~G~-~V~viE~~~~~   93 (300)
                      -.+.+++|.|+|-+|+.+|..|.+.|. ++.++|+..-+
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            356899999999999999999999887 69999987654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.05  E-value=0.055  Score=38.47  Aligned_cols=35  Identities=11%  Similarity=0.189  Sum_probs=27.0

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC-------cEEEEecCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGI-------GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~-------~V~viE~~~   91 (300)
                      .+.+|.|||| |..|.++|+.|...++       ...++|...
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~   44 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP   44 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc
Confidence            4569999996 9999999999987543       356666544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.83  E-value=0.039  Score=37.84  Aligned_cols=37  Identities=24%  Similarity=0.111  Sum_probs=28.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCc-EEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQR-LGIG-SLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~-~G~~-V~viE~~~~~   93 (300)
                      ++++|+|+|||-+|-+++..+.+ .|++ |..+|-++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            45799999999999998887754 3665 5777877654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.80  E-value=0.14  Score=36.89  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|+|.|| |..|+.+...+...|.+|+.+++++.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccc
Confidence            3456888896 99999988888888999999987654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.78  E-value=0.18  Score=40.73  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=32.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+..|+|+|| |..|-.++..|.++|++|+++-|+..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4678999996 99999999999999999999988653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.66  E-value=0.17  Score=36.82  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|.|||.|.+|-..|..|...|.+|..+++...
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccc
Confidence            356899999999999999999999999999998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.14  Score=36.93  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....|+|+|| |..|+.+...+...|.+|+++.+++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            3457999996 9999998888888899999988654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.33  E-value=0.17  Score=40.73  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.2

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +..+|+|.| +|..|..++..|.++|++|.++++...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            457899999 689999999999999999999998754

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.11  E-value=0.17  Score=37.99  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHH--------------------HcCC-cEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQ--------------------RLGI-GSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~--------------------~~G~-~V~viE~~~~   92 (300)
                      ..+|+|||+|-+++=+|..|.                    +.|. +|.++-|...
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            579999999999999998887                    5677 6999988764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.86  E-value=0.21  Score=38.01  Aligned_cols=35  Identities=11%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ..|+|.|| |-.|.++|..|+++|.+|.++++....
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            57899998 557999999999999999999987643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.60  E-value=0.12  Score=35.18  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=27.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           60 DIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        60 dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .++|+|.|..|..++..|.  |.+|.++|.++..
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~   33 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDENV   33 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTH
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHH
Confidence            5899999999999999994  5678889987753

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.41  E-value=0.23  Score=38.10  Aligned_cols=32  Identities=34%  Similarity=0.336  Sum_probs=26.5

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           61 IVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        61 VvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      |+|.|| +-.|.++|..|++.|.+|++++++..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            455575 56899999999999999999998753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.29  E-value=0.22  Score=37.76  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .++|.|| +-.|.++|..|+++|.+|++.+++..
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4566676 66799999999999999999998764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.28  E-value=0.25  Score=36.59  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...+|+|-|-|-+|..+|..|.+.|.+|++.|.+.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            45789999999999999999999999999988654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=88.99  E-value=0.22  Score=38.65  Aligned_cols=35  Identities=20%  Similarity=0.089  Sum_probs=30.1

Q ss_pred             CCcEEEECC-C--HHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGA-G--IAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGg-G--~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.|| |  -.|.++|..|+++|.+|++.++++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467889986 3  4899999999999999999999864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.85  E-value=0.64  Score=29.24  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=28.3

Q ss_pred             CcEEEECCCHHHHH-HHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGIAGLA-TAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~aGl~-~A~~L~~~G~~V~viE~~~~   92 (300)
                      .+|-+||-|-+|++ +|..|.++|++|.--|+...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~   36 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET   36 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            46788998888874 48999999999999997753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.80  E-value=0.12  Score=36.59  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=22.4

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGI   82 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~   82 (300)
                      .+.+|.|||| |..|..+|+.|...++
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccc
Confidence            3569999997 9999999999998754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.71  E-value=0.22  Score=39.18  Aligned_cols=34  Identities=32%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             CCCcEEEECCC---HHHHHHHHHHHHcCCcEEEEecC
Q 022277           57 RKEDIVIVGAG---IAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        57 ~~~dVvIIGgG---~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      ....++|.||+   -.|.++|..|+++|.+|++..+.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            45678999975   58999999999999999998764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.70  E-value=0.2  Score=37.57  Aligned_cols=32  Identities=16%  Similarity=0.139  Sum_probs=27.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEe
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIE   88 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE   88 (300)
                      ...+|+|.|| |..|..++..|.++|.+|.|+.
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            3578999995 9999999999999998866654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.50  E-value=0.28  Score=37.79  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=27.1

Q ss_pred             cE-EEECCC-HHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DI-VIVGAG-IAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dV-vIIGgG-~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +| +|.||+ -.|.++|..|++.|.+|++.+|+..
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            55 555765 4799999999999999999998753

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.42  E-value=0.28  Score=38.85  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +|+|.|| |..|-.++..|.++|++|..+++...
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6889986 99999999999999999999998754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.23  Score=38.00  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=27.9

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .-++|.||+- .|.++|..|+++|.+|++.+|+..
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3455657665 699999999999999999999863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.34  E-value=0.29  Score=35.33  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=27.0

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC-------cEEEEecCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGI-------GSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~-------~V~viE~~~   91 (300)
                      ...+|.|+|| |..|.++|+.|+...+       .+.++|...
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~   65 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER   65 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence            4578999996 9999999999997532       456666544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=88.29  E-value=0.27  Score=38.67  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=27.5

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..++|.| +|-.|.++|..|++.|.+|++.+++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3455555 67789999999999999999999986

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=0.51  Score=28.81  Aligned_cols=36  Identities=28%  Similarity=0.498  Sum_probs=28.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      +...|+|.|| |-+|..+...+...|.+|+.+-+++.
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            4567888887 88888877777778999998877653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=88.09  E-value=0.34  Score=35.68  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...|.|||-|-+|-.+|..|...|.+|..+++...
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            57899999999999999999999999999997654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.08  E-value=0.22  Score=37.74  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=29.1

Q ss_pred             cEEEECCC-HHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           60 DIVIVGAG-IAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        60 dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      +|+|.||+ -.|.++|..|+++|.+|+++++....
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            58888864 56999999999999999999998653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.95  E-value=0.35  Score=35.69  Aligned_cols=36  Identities=11%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ...|.|||.|-+|-.+|..|.-.|.+|..+++....
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccch
Confidence            468999999999999999999999999999987643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.81  E-value=0.29  Score=37.64  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             CCcEEEECCC---HHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAG---IAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG---~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.||+   -.|.++|..|++.|.+|++.++...
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            4568888863   3799999999999999999988754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.79  E-value=0.24  Score=38.28  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=29.4

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.||+- .|.++|..|++.|.+|++.+++..
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35667777664 799999999999999999999875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.43  Score=36.40  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=26.8

Q ss_pred             cEEEE--CCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIV--GAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvII--GgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +++||  |++-.|.++|..|+++|.+|++.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            45555  566779999999999999999999875

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=0.34  Score=36.97  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=28.5

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .-++|.||+- .|.++|..|+++|.+|++.+|+..
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4566777654 699999999999999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.86  E-value=0.31  Score=37.54  Aligned_cols=35  Identities=14%  Similarity=0.098  Sum_probs=28.9

Q ss_pred             CCCcEEEECC-CH--HHHHHHHHHHHcCCcEEEEecCC
Q 022277           57 RKEDIVIVGA-GI--AGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        57 ~~~dVvIIGg-G~--aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ....++|.|| |-  .|.++|..|++.|.+|++..++.
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            3467888884 43  79999999999999999998765

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.83  E-value=0.39  Score=36.99  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=25.6

Q ss_pred             cEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      -++|.||+ -.|.++|..|+++|.+|++.++++
T Consensus         6 ~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34454544 479999999999999999999875

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=86.74  E-value=1  Score=30.92  Aligned_cols=35  Identities=11%  Similarity=0.050  Sum_probs=25.7

Q ss_pred             CCeEEeCC--eEEEEEEcCCceEEEEEcCCcEEEcCEEEE
Q 022277          171 PESVQFSS--ELAKIETSGNGVTILELVNGTRIYANIVIG  208 (300)
Q Consensus       171 g~~i~~~~--~v~~i~~~~~~~~~v~~~~g~~~~ad~vV~  208 (300)
                      +++++.+.  ++.+++.....   +.+.+|+++.+|++++
T Consensus       102 ~I~~~~~~~~~~v~vd~~~~~---~~~~~Ge~v~yD~l~v  138 (141)
T d1fcda2         102 MIEWHPGPDSAVVKVDGGEMM---VETAFGDEFKADVINL  138 (141)
T ss_dssp             SEEEECSSTTCEEEEEETTTE---EEETTCCEEECSEEEE
T ss_pred             CceeeecCCceEEeecCCcEE---EEeCCCcEEeeeEEEe
Confidence            67888765  45566555443   7889999999999976

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.48  E-value=0.34  Score=37.11  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=29.0

Q ss_pred             CCcEEEECCCH---HHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGI---AGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~---aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.||+-   .|.++|..|++.|.+|++..+++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            45677887753   688999999999999999998764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.48  E-value=0.4  Score=37.09  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=27.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .-++|.|| +-.|.++|..|++.|.+|++.+++.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45666665 4579999999999999999999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.46  E-value=0.44  Score=36.30  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.|| +-.|.++|..|++.|.+|++.+++..
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            355677776 45899999999999999999998753

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=86.22  E-value=0.51  Score=34.60  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ....|.|||.|-+|-..|..|...|.+|..+++...
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCccc
Confidence            346899999999999999999999999999998754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=86.16  E-value=0.38  Score=38.45  Aligned_cols=31  Identities=23%  Similarity=0.490  Sum_probs=27.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEecC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      +|+|+|| |..|-.++..|.+.|++|+++++.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            5888885 899999999999999999999864

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.11  E-value=0.44  Score=36.59  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=26.0

Q ss_pred             cEE-EECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIV-IVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVv-IIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      +|+ |-||+ -.|.++|..|++.|.+|++.+|+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            454 55654 479999999999999999999875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.01  E-value=0.43  Score=36.59  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.||+ -.|.++|..|++.|.+|++.+++..
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3567788875 4699999999999999999998753

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.95  E-value=0.51  Score=35.68  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.|| +-.|.++|..|++.|.+|++.+|+..
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            467888887 45799999999999999999998753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=85.85  E-value=0.43  Score=36.74  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=28.0

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .-++|.||+ -.|.++|..|++.|.+|++.+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456777874 479999999999999999999875

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.75  E-value=0.4  Score=37.58  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc----CC-------cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL----GI-------GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~----G~-------~V~viE~~~~~   93 (300)
                      .+.+|+|.|+|-+|+.+|..|...    |+       ++.++|+..-+
T Consensus        24 ~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv   71 (294)
T d1pj3a1          24 SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL   71 (294)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEEC
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCc
Confidence            467999999999999999987654    54       59999987644

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.60  E-value=0.48  Score=36.30  Aligned_cols=32  Identities=22%  Similarity=0.120  Sum_probs=27.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      -++|.|| +-.|.++|..|+++|.+|++.+++.
T Consensus         5 valITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4566676 4579999999999999999999875

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=85.44  E-value=0.47  Score=37.32  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc----CC-------cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL----GI-------GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~----G~-------~V~viE~~~~~   93 (300)
                      .+.+++|.|+|-+|+.+|..|.+.    |+       ++.++|+..-+
T Consensus        24 ~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv   71 (308)
T d1o0sa1          24 SQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV   71 (308)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEEC
T ss_pred             HHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCc
Confidence            467999999999999999888653    53       49999987644

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=85.39  E-value=0.5  Score=36.64  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=26.2

Q ss_pred             cEEEE-CC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIV-GA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvII-Gg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      -|+|| || +-.|.++|..|++.|.+|++..+..
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            36666 54 5689999999999999999988764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.30  E-value=0.4  Score=36.83  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=28.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...++|.|| +-.|.++|..|++.|.+|++.+++.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356778887 5579999999999999999999875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.29  E-value=0.74  Score=34.84  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCCCcC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQADSLR   94 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~~~~   94 (300)
                      ...++|.||+ -.|.++|..|++.|.+|++.+|+....
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            4567777766 479999999999999999999987653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.23  E-value=0.35  Score=37.47  Aligned_cols=35  Identities=20%  Similarity=0.400  Sum_probs=29.5

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.||+- .|.++|..|+++|.+|+++.|+..
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45678888765 699999999999999999998753

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=85.22  E-value=0.34  Score=39.25  Aligned_cols=44  Identities=11%  Similarity=0.140  Sum_probs=33.0

Q ss_pred             CCCeEEeCCeEEEEEEcCCceEEEEE--cC--C-----cEEEcCEEEEcCCCC
Q 022277          170 PPESVQFSSELAKIETSGNGVTILEL--VN--G-----TRIYANIVIGCDGIR  213 (300)
Q Consensus       170 ~g~~i~~~~~v~~i~~~~~~~~~v~~--~~--g-----~~~~ad~vV~A~G~~  213 (300)
                      .+++|+.+++|+.|..++++.+.|.+  .+  +     +++.||.||+|.|+-
T Consensus       236 g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai  288 (370)
T d3coxa1         236 GKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSV  288 (370)
T ss_dssp             TCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHH
T ss_pred             CCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHH
Confidence            36799999999999998776444433  22  2     258899999999964

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=84.96  E-value=0.59  Score=35.90  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=29.4

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...++|.|| +-.|.++|..|++.|.+|++.+|+.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467888885 4579999999999999999999975

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.81  E-value=0.54  Score=35.77  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=28.8

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...++|.||+ -.|.++|..|++.|.+|++.+|+.
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3567788864 579999999999999999999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.75  E-value=0.55  Score=36.17  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=26.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      -++|.|| +-.|.++|..|++.|.+|++.+|+.
T Consensus         7 valVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3445454 5679999999999999999999875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=84.67  E-value=0.65  Score=36.02  Aligned_cols=35  Identities=20%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.|| +-.|.++|..|++.|.+|++.+|+..
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            356777786 56799999999999999999998753

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.39  E-value=0.57  Score=35.93  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=29.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...++|.||+ -.|.++|..|+++|.+|++.+|+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3567888876 469999999999999999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.36  E-value=0.43  Score=36.55  Aligned_cols=33  Identities=18%  Similarity=0.155  Sum_probs=26.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .-++|.|| +-.|.++|..|++.|.+|++.+|+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            34555576 4579999999999999999999875

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.24  E-value=0.55  Score=35.82  Aligned_cols=35  Identities=20%  Similarity=0.163  Sum_probs=28.6

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..-++|.||+ -.|.++|..|++.|.+|++.+++..
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            3456677764 5799999999999999999998763

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=84.19  E-value=0.65  Score=33.76  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....|.|||.|-+|...|..|...|.+|..+++....
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP   79 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecccc
Confidence            3579999999999999999999999999999987643

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=0.64  Score=37.13  Aligned_cols=32  Identities=31%  Similarity=0.504  Sum_probs=28.8

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecC
Q 022277           59 EDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        59 ~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      .+|+|.| +|..|-.++..|.+.|++|+++|+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            5789988 5999999999999999999999864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=0.65  Score=35.33  Aligned_cols=34  Identities=21%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...++|.||+ -.|.++|..|++.|.+|++.+|+.
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4567787865 469999999999999999999875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.91  E-value=0.61  Score=35.80  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=28.2

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..-++|.||+ -.|.++|..|+++|.+|++.+|+.
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3457777765 459999999999999999999875

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=83.90  E-value=0.89  Score=34.75  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=28.5

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..-|+|.||+ -.|.++|..|++.|.+|+++.+...
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4567788876 4799999999999999988876653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.87  E-value=0.6  Score=35.86  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=28.8

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..-++|.||+ -.|.++|..|++.|.+|++.+|+.
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3557787875 479999999999999999999875

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.82  E-value=0.61  Score=35.82  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .-++|.||+ -.|.++|..|++.|.+|.+.+++..
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456677876 4699999999999999999998753

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.80  E-value=0.83  Score=33.17  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....|.|||-|.+|-..|..|...|.+|..+++....
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL   79 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeeccccccc
Confidence            4578999999999999999999999999999987643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=83.73  E-value=0.57  Score=37.75  Aligned_cols=32  Identities=25%  Similarity=0.187  Sum_probs=27.4

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           60 DIVIVG-AGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .|+|.| +|..|..++..|.+.|++|+.++|..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            456888 89999999999999999999999854

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=83.55  E-value=0.65  Score=35.22  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..++|.||+- .|.++|..|+++|.+|++..|+..
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4567778765 799999999999999999998764

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.52  E-value=0.8  Score=33.15  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      ....+.|||.|-.|-..|..|...|.+|..+++....
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             cceeeeeccccchhHHHHHHhhhccceEEeecCCCCh
Confidence            4578999999999999999999999999999987643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.41  E-value=0.76  Score=34.95  Aligned_cols=34  Identities=12%  Similarity=0.112  Sum_probs=28.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      .-++|.|| +-.|.++|..|++.|.+|++.+++..
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45666676 45799999999999999999998763

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.28  E-value=0.66  Score=36.57  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=28.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQA   90 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~   90 (300)
                      .+|+|.|| |..|..++..|.++|++|+.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            57889885 889999999999999999999863

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.7  Score=35.29  Aligned_cols=33  Identities=12%  Similarity=0.265  Sum_probs=28.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..++|.|| +-.|.++|..|++.|.+|++.+|+.
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45778786 5679999999999999999999875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.59  Score=36.76  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=28.2

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..-++|.||+ -.|.++|..|++.|.+|++.+|+.
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4567777764 469999999999999999999874

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=83.07  E-value=0.72  Score=36.11  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHc----CC-------cEEEEecCCCc
Q 022277           57 RKEDIVIVGAGIAGLATAVSLQRL----GI-------GSLVIEQADSL   93 (300)
Q Consensus        57 ~~~dVvIIGgG~aGl~~A~~L~~~----G~-------~V~viE~~~~~   93 (300)
                      .+.+++|.|+|.+|+.+|..|...    |+       ++.++|+..-+
T Consensus        24 ~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv   71 (298)
T d1gq2a1          24 SDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI   71 (298)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEEC
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcc
Confidence            468999999999999999988643    43       69999987654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=83.01  E-value=0.77  Score=36.92  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             CCeEEeCCeEEEEEEcCCceE--EEEEc--CC-----cEEEcCEEEEcCCCCh
Q 022277          171 PESVQFSSELAKIETSGNGVT--ILELV--NG-----TRIYANIVIGCDGIRS  214 (300)
Q Consensus       171 g~~i~~~~~v~~i~~~~~~~~--~v~~~--~g-----~~~~ad~vV~A~G~~s  214 (300)
                      +++|+.+++|+.|+.++++.+  .|...  ++     +++.|+.||+|.|+..
T Consensus       233 n~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~  285 (367)
T d1n4wa1         233 KVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLG  285 (367)
T ss_dssp             SEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHH
T ss_pred             CeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhc
Confidence            589999999999998876533  33332  22     2588999999999743

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=82.89  E-value=0.81  Score=34.86  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=28.0

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           59 EDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        59 ~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ..++|.| ++-.|.++|..|++.|.+|++.+++..
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4566667 456699999999999999999998864

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=82.86  E-value=0.71  Score=33.02  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=25.6

Q ss_pred             CCcEEEECCCHHHHHHHHH--HHHc----CCcEEEEecCCC
Q 022277           58 KEDIVIVGAGIAGLATAVS--LQRL----GIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~--L~~~----G~~V~viE~~~~   92 (300)
                      ..+|.|||||-.|.+.++.  |.+.    +.+++++|.++.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            3589999999999776543  3332    458999998763

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.79  E-value=0.8  Score=35.19  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=26.8

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      .-++|.|| +-.|.++|..|++.|.+|++.+++.
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            44555564 5579999999999999999999875

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.46  E-value=0.65  Score=37.84  Aligned_cols=30  Identities=23%  Similarity=0.538  Sum_probs=27.2

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHcCCcEEEEe
Q 022277           59 EDIVIVG-AGIAGLATAVSLQRLGIGSLVIE   88 (300)
Q Consensus        59 ~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE   88 (300)
                      .+|+|.| +|..|..++..|.+.|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            4688888 58999999999999999999997

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.28  E-value=0.75  Score=35.22  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=26.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..++|.|| +-.|.++|..|++.|.+|++.+++.
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45555565 4579999999999999999999875

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.11  E-value=0.54  Score=36.17  Aligned_cols=35  Identities=11%  Similarity=0.186  Sum_probs=28.1

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCC
Q 022277           58 KEDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        58 ~~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...++|.||+- .|.++|..|++.|.+|++.+++..
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35566666544 689999999999999999998753

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.10  E-value=0.67  Score=32.08  Aligned_cols=32  Identities=22%  Similarity=0.273  Sum_probs=25.2

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC---cEEEEec
Q 022277           58 KEDIVIVGA-GIAGLATAVSLQRLGI---GSLVIEQ   89 (300)
Q Consensus        58 ~~dVvIIGg-G~aGl~~A~~L~~~G~---~V~viE~   89 (300)
                      +.+|.|||| |.+|..+...|.++++   ++..+-.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s   37 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS   37 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence            468999998 9999999999987653   5555543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.04  E-value=0.74  Score=32.23  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=22.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCcE
Q 022277           59 EDIVIVGA-GIAGLATAVSLQRLGIGS   84 (300)
Q Consensus        59 ~dVvIIGg-G~aGl~~A~~L~~~G~~V   84 (300)
                      ++|+|||| |.+|..+-..|.++.+.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~   28 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPI   28 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCc
Confidence            68999999 999999999998886543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.67  E-value=0.88  Score=35.09  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=27.8

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVG-AGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIG-gG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...++|.| ++-.|.++|..|+++|.+|++.+++.
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            45666777 45668999999999999999999875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=0.9  Score=36.07  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=27.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcC-CcEEEEecCC
Q 022277           60 DIVIVGA-GIAGLATAVSLQRLG-IGSLVIEQAD   91 (300)
Q Consensus        60 dVvIIGg-G~aGl~~A~~L~~~G-~~V~viE~~~   91 (300)
                      +|+|.|| |..|-.++..|.+.| .+|..+++..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            5899986 899999999999998 5899998754

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.98  E-value=1.1  Score=31.93  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Q 022277           58 KEDIVIVGAGIAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        58 ~~dVvIIGgG~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ...|+|||=|.=|-+=|+.|+..|++|+|==|..
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~g   49 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCC
Confidence            5799999999999999999999999999966554

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.83  E-value=0.98  Score=35.52  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=27.5

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCCc
Q 022277           59 EDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADSL   93 (300)
Q Consensus        59 ~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~~   93 (300)
                      .-++|-||+- .|.++|..|+++|.+|++.+++...
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~   43 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF   43 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence            3455656554 5899999999999999999987654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.61  E-value=1.1  Score=32.89  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=25.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCcEEEE
Q 022277           58 KEDIVIVGA-GIAGLATAVSLQRLGIGSLVI   87 (300)
Q Consensus        58 ~~dVvIIGg-G~aGl~~A~~L~~~G~~V~vi   87 (300)
                      +.+|+|.|| |..|-.+...|.+.|..+.|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            368999999 999999999999999844333

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.50  E-value=0.65  Score=35.94  Aligned_cols=33  Identities=18%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..++|.||+ -.|.++|..|++.|.+|++.+|+.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456666754 468999999999999999999875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=80.49  E-value=0.72  Score=35.03  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=26.7

Q ss_pred             cEEEECCC-HHHHHHHHHHHHcCCcEEEEecCCC
Q 022277           60 DIVIVGAG-IAGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        60 dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      -++|.||+ -.|.++|..|++.|.+|++.+++..
T Consensus         6 ~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            45555754 4699999999999999999998763

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.44  E-value=0.65  Score=35.98  Aligned_cols=33  Identities=18%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..++|.||+ -.|.++|..|++.|.+|++.+++.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            446666654 468999999999999999999875

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.35  E-value=0.66  Score=35.52  Aligned_cols=33  Identities=15%  Similarity=0.155  Sum_probs=26.6

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHcCCcEEEEecCC
Q 022277           59 EDIVIVGAG-IAGLATAVSLQRLGIGSLVIEQAD   91 (300)
Q Consensus        59 ~dVvIIGgG-~aGl~~A~~L~~~G~~V~viE~~~   91 (300)
                      ..++|.||+ -.|.++|..|++.|.+|++.+++.
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            445555654 468999999999999999999875

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=80.24  E-value=2.1  Score=30.19  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHHcCCcEEEEecCCC
Q 022277           57 RKEDIVIVGAGI-AGLATAVSLQRLGIGSLVIEQADS   92 (300)
Q Consensus        57 ~~~dVvIIGgG~-aGl~~A~~L~~~G~~V~viE~~~~   92 (300)
                      ...+|+|||.+. .|.-+|..|.++|..|++++....
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~   72 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK   72 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhccccccccccc
Confidence            568999999887 899999999999999999987663