Citrus Sinensis ID: 022297

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVEFPHTGSIVRRE
ccccccHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccEEEccccccccccccccccEEEEccccccHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHcccEEEEEcccccccEEEEccccccEEEEEccHHHHHHHccccccEEEEccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEcccccccHHHHHHHHHccccEEEEEcccccccHHHHHHHHHccccccccccccc
cccHHHHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEcHHHHHHHHHcccEEEEcccccHHHHccccccEEEEEccHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccEEccccccccEEEEEcHHHHHHHHccEEEEccccccccHHHHHHHHHHHcccccccccccHHHHcHcHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHccccEEEEccHHHcHHHHHcccEEEEccccccEEEcc
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITneiihnptvNKRLEEMavqnipveegkkqfdvvnkgdvvvLPAFGAAVEEMVTLNnknvqivdttcpwvSKVWTSVekhkkgdytsiihgkysheetvataSFAGKYIIVKNMKEAEYVCDYIlggelngssstKEAFLEKFKKAVskgfdpdvdlVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLlvggtraipHTFKRLQktvefphtgsivrre
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPveegkkqfdvvNKGDVVVLPAFGAAVEEMVTLnnknvqivdttcPWVSKVWTsvekhkkgdytsiihgkysheeTVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAvskgfdpdvdlVKVGianqttmlkgeteeiGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRaiphtfkrlqktvefphtgsivrre
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVEFPHTGSIVRRE
********IIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNG*****EAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVEF**********
****YTS**IKKLKE*GFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVEFPHTGS*V***
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVEFPHTGSIVRRE
**QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVEFPHTGSIVRR*
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MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIRWLRKRSILSWLLVGGTRAIPHTFKRLQKTVEFPHTGSIVRRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
Q6AVG6459 4-hydroxy-3-methylbut-2-e yes no 0.846 0.551 0.853 1e-127
Q94B35466 4-hydroxy-3-methylbut-2-e yes no 0.849 0.545 0.799 1e-122
B1WTZ2402 4-hydroxy-3-methylbut-2-e yes no 0.812 0.604 0.670 2e-96
Q3M8X6402 4-hydroxy-3-methylbut-2-e yes no 0.812 0.604 0.638 1e-94
P58674402 4-hydroxy-3-methylbut-2-e yes no 0.812 0.604 0.638 2e-94
B0JVA7402 4-hydroxy-3-methylbut-2-e yes no 0.812 0.604 0.650 3e-94
B7KEG3402 4-hydroxy-3-methylbut-2-e yes no 0.812 0.604 0.630 7e-94
B8HWD3405 4-hydroxy-3-methylbut-2-e yes no 0.816 0.602 0.637 8e-94
Q5N249398 4-hydroxy-3-methylbut-2-e yes no 0.826 0.620 0.596 3e-93
Q31S64398 4-hydroxy-3-methylbut-2-e yes no 0.826 0.620 0.596 3e-93
>sp|Q6AVG6|ISPH_ORYSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1 Back     alignment and function desciption
 Score =  453 bits (1165), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/253 (85%), Positives = 233/253 (92%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           M+QEYTSD+IK LKENG ++TWG V VKLAE+YGFCWGVERAVQIAYEARKQFP+++IW+
Sbjct: 80  MSQEYTSDVIKTLKENGNQHTWGPVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDRIWL 139

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLE+M VQNIPV+ G K FDVV +GDVVVLPAFGAAVEEM TLN K V
Sbjct: 140 TNEIIHNPTVNKRLEDMGVQNIPVDAGIKDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKV 199

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVW  VEKHKKGDYTSIIHGKYSHEETVATASFAG YIIVKN+ EA YV
Sbjct: 200 QIVDTTCPWVSKVWNMVEKHKKGDYTSIIHGKYSHEETVATASFAGTYIIVKNIAEASYV 259

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGG+L+GSSSTKE FLEKFK AVS GFDPDVDLVKVGIANQTTMLKGETEEIGKLV
Sbjct: 260 CDYILGGQLDGSSSTKEEFLEKFKNAVSPGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 319

Query: 241 EKTMMRKFGVENM 253
           EKTMMR+FGVEN+
Sbjct: 320 EKTMMRRFGVENV 332
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 7EC: .EC: 1EC: .EC: 2
>sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1 Back     alignment and function description
>sp|B1WTZ2|ISPH_CYAA5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q3M8X6|ISPH_ANAVT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|P58674|ISPH_NOSS1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B0JVA7|ISPH_MICAN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B7KEG3|ISPH_CYAP7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B8HWD3|ISPH_CYAP4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q5N249|ISPH_SYNP6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q31S64|ISPH_SYNE7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
224105455 460 predicted protein [Populus trichocarpa] 0.846 0.55 0.881 1e-131
255556135 466 4-hydroxy-3-methylbut-2-enyl diphosphate 0.846 0.542 0.881 1e-130
189017050 426 putative chloroplast 4-hydroxy-3-methylb 0.849 0.596 0.874 1e-130
164605002 462 4-hydroxy-3-methylbut-2-enyl diphosphate 0.846 0.547 0.885 1e-130
195928050 462 4-hydroxy-3-methylbut-2-enyl diphosphate 0.846 0.547 0.877 1e-129
405789874371 putative 4-hydroxy-3-methylbut-2-enyl di 0.849 0.684 0.874 1e-129
388494250 453 unknown [Lotus japonicus] 0.846 0.558 0.861 1e-129
356538819 462 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.846 0.547 0.869 1e-129
114329246 459 hydroxymethylbutenyl diphosphate reducta 0.846 0.551 0.877 1e-129
356545301380 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.846 0.665 0.873 1e-129
>gi|224105455|ref|XP_002313816.1| predicted protein [Populus trichocarpa] gi|222850224|gb|EEE87771.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/253 (88%), Positives = 245/253 (96%)

Query: 1   MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
           MN+EYTSDIIKKLKENG+EYTWGNV VKLAE+YGFCWGVERAVQIAYEARKQFP++KIWI
Sbjct: 81  MNREYTSDIIKKLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPDDKIWI 140

Query: 61  TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
           TNEIIHNPTVNKRLEEM V+N+PVEEGKKQF+VVN GDVV+LPAFGAAV+EM+TL++KNV
Sbjct: 141 TNEIIHNPTVNKRLEEMEVENVPVEEGKKQFEVVNGGDVVILPAFGAAVDEMLTLSSKNV 200

Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
           QIVDTTCPWVSKVWT+VEKHKKGDYTSIIHGKY+HEETVATASFAGKYIIVK+MKEA YV
Sbjct: 201 QIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKDMKEAMYV 260

Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
           CDYILGGELNGSSST+E FLEKFK AVSKGFDPD DLVK+GIANQTTMLKGETE+IGKLV
Sbjct: 261 CDYILGGELNGSSSTREEFLEKFKNAVSKGFDPDSDLVKLGIANQTTMLKGETEDIGKLV 320

Query: 241 EKTMMRKFGVENM 253
           E+ MMRK+GVEN+
Sbjct: 321 ERIMMRKYGVENV 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556135|ref|XP_002519102.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] gi|223541765|gb|EEF43313.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|189017050|gb|ACD70402.1| putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|164605002|dbj|BAF98297.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|195928050|gb|ACG55683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|405789874|gb|AFS28680.1| putative 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, partial [Olea europaea] Back     alignment and taxonomy information
>gi|388494250|gb|AFK35191.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356538819|ref|XP_003537898.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|114329246|gb|ABI64152.1| hydroxymethylbutenyl diphosphate reductase [Camptotheca acuminata] Back     alignment and taxonomy information
>gi|356545301|ref|XP_003541082.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:2116164466 HDR "4-hydroxy-3-methylbut-2-e 0.846 0.542 0.802 1.8e-112
UNIPROTKB|Q749Y8282 ispH "4-hydroxy-3-methylbut-2- 0.685 0.726 0.266 1.3e-14
TIGR_CMR|GSU_2604282 GSU_2604 "penicillin tolerance 0.685 0.726 0.266 1.3e-14
TIGR_CMR|ECH_0502319 ECH_0502 "hydroxymethylbutenyl 0.675 0.633 0.289 1.8e-14
TIGR_CMR|APH_0380324 APH_0380 "4-hydroxy-3-methylbu 0.491 0.453 0.296 1.1e-11
TIGR_CMR|NSE_0438303 NSE_0438 "4-hydroxy-3-methylbu 0.408 0.402 0.320 3.4e-11
TIGR_CMR|CHY_1925 653 CHY_1925 "hydroxymethylbutenyl 0.481 0.220 0.259 1.2e-10
TIGR_CMR|DET_1344284 DET_1344 "hydroxymethylbutenyl 0.605 0.637 0.242 2.3e-09
UNIPROTKB|Q8EBI7318 ispH "4-hydroxy-3-methylbut-2- 0.458 0.430 0.284 6e-09
TIGR_CMR|SO_3529318 SO_3529 "penicillin tolerance 0.458 0.430 0.284 6e-09
TAIR|locus:2116164 HDR "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 203/253 (80%), Positives = 233/253 (92%)

Query:     1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
             MN+EYTSDI++ LK NG+ Y+WG+V VKLA++YGFCWGVERAVQIAYEARKQFPEE++WI
Sbjct:    87 MNREYTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWI 146

Query:    61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
             TNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPAFGA V+EM  LN+K V
Sbjct:   147 TNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKV 206

Query:   121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
             QIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASFAGKYIIVKNMKEA YV
Sbjct:   207 QIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYV 266

Query:   181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
             CDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIANQTTMLKGETEEIG+L+
Sbjct:   267 CDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLL 326

Query:   241 EKTMMRKFGVENM 253
             E TMMRK+GVEN+
Sbjct:   327 ETTMMRKYGVENV 339
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS
GO:0046677 "response to antibiotic" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity" evidence=IGI
GO:0009507 "chloroplast" evidence=IDA
UNIPROTKB|Q749Y8 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2604 GSU_2604 "penicillin tolerance protein LytB" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0502 ECH_0502 "hydroxymethylbutenyl pyrophosphate reductase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0380 APH_0380 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0438 NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1925 CHY_1925 "hydroxymethylbutenyl pyrophosphate reductase/ribosomal protein S1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1344 DET_1344 "hydroxymethylbutenyl pyrophosphate reductase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EBI7 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3529 SO_3529 "penicillin tolerance protein LytB" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P58674ISPH_NOSS11, ., 1, 7, ., 1, ., 20.63850.81270.6044yesno
Q31S64ISPH_SYNE71, ., 1, 7, ., 1, ., 20.59680.82600.6206yesno
B7K4V8ISPH_CYAP81, ., 1, 7, ., 1, ., 20.62650.81270.6029yesno
Q31CR8ISPH_PROM91, ., 1, 7, ., 1, ., 20.58260.82940.6231yesno
B7KEG3ISPH_CYAP71, ., 1, 7, ., 1, ., 20.63050.81270.6044yesno
B2IZV5ISPH_NOSP71, ., 1, 7, ., 1, ., 20.61840.81270.6044yesno
B1WTZ2ISPH_CYAA51, ., 1, 7, ., 1, ., 20.67060.81270.6044yesno
Q10WA8ISPH_TRIEI1, ., 1, 7, ., 1, ., 20.59670.80930.6034yesno
Q7U9K4ISPH_SYNPX1, ., 1, 7, ., 1, ., 20.59830.81270.6090yesno
B1XPG7ISPH_SYNP21, ., 1, 7, ., 1, ., 20.63050.81270.6029yesno
A2BP63ISPH_PROMS1, ., 1, 7, ., 1, ., 20.58430.83270.6256yesno
A5GIF7ISPH_SYNPW1, ., 1, 7, ., 1, ., 20.60240.81270.6090yesno
Q7V329ISPH_PROMP1, ., 1, 7, ., 1, ., 20.58260.82940.6231yesno
A5GWG3ISPH_SYNR31, ., 1, 7, ., 1, ., 20.60070.82600.6083yesno
Q3M8X6ISPH_ANAVT1, ., 1, 7, ., 1, ., 20.63850.81270.6044yesno
B8HWD3ISPH_CYAP41, ., 1, 7, ., 1, ., 20.63740.81600.6024yesno
A2CCK3ISPH_PROM31, ., 1, 7, ., 1, ., 20.57420.81270.6105yesno
Q3B080ISPH_SYNS91, ., 1, 7, ., 1, ., 20.58100.82600.6190yesno
Q46HB0ISPH_PROMT1, ., 1, 7, ., 1, ., 20.59830.81270.6059yesno
A9BDN6ISPH_PROM41, ., 1, 7, ., 1, ., 20.58230.81270.6014yesno
A2C096ISPH_PROM11, ., 1, 7, ., 1, ., 20.59830.81270.6059yesno
Q7V4T7ISPH_PROMM1, ., 1, 7, ., 1, ., 20.57830.81270.6105yesno
B0JVA7ISPH_MICAN1, ., 1, 7, ., 1, ., 20.65060.81270.6044yesno
Q8DK29ISPH_THEEB1, ., 1, 7, ., 1, ., 20.62840.82600.6144yesno
Q94B35ISPH_ARATH1, ., 1, 7, ., 1, ., 20.79920.84940.5450yesno
Q0IDE5ISPH_SYNS31, ., 1, 7, ., 1, ., 20.59280.82600.6206yesno
Q6AVG6ISPH_ORYSJ1, ., 1, 7, ., 1, ., 20.85370.84610.5511yesno
Q5N249ISPH_SYNP61, ., 1, 7, ., 1, ., 20.59680.82600.6206yesno
Q3AN10ISPH_SYNSC1, ., 1, 7, ., 1, ., 20.60640.81270.6090yesno
A3PAY5ISPH_PROM01, ., 1, 7, ., 1, ., 20.58660.82940.6231yesno
A2BUP5ISPH_PROM51, ., 1, 7, ., 1, ., 20.58260.82940.6231yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.1.20.914
3rd Layer1.17.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HDR
SubName- Full=Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase; EC=1.17.1.2; Flags- Fragment; (460 aa)
(Populus trichocarpa)
Predicted Functional Partners:
HDS
SubName- Full=Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.1 [...] (742 aa)
  •  •• 0.952
estExt_fgenesh4_pm.C_660111
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC-1.17.7.1) (761 aa)
  •  •• 0.947
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
     •• 0.920
gw1.XV.832.1
hypothetical protein (236 aa)
     •  0.899
gw1.VII.3333.1
annotation not avaliable (311 aa)
     •  0.899
gw1.IV.3487.1
hypothetical protein (293 aa)
     •  0.899
gw1.II.860.1
hypothetical protein (306 aa)
     •  0.899
IspS
SubName- Full=Putative chloroplast isoprene synthase; Flags- Fragment; (536 aa)
     •  0.899
grail3.0137000601
hypothetical protein (134 aa)
     •  0.899
grail3.0106013901
diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
PLN02821460 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-buten 0.0
PRK13371387 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl d 1e-159
pfam02401280 pfam02401, LYTB, LytB protein 5e-55
COG0761294 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphos 3e-53
TIGR00216280 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2 2e-50
PRK12360281 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl d 6e-24
PRK01045298 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl dipho 8e-24
PRK00087 647 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d 1e-23
>gnl|CDD|215440 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
 Score =  523 bits (1350), Expect = 0.0
 Identities = 212/253 (83%), Positives = 231/253 (91%), Gaps = 1/253 (0%)

Query: 1   MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIW 59
           M  EY TSD++K LKENG  YTWG+V VKLA++YGFCWGVERAVQIAYEARKQFP+EK+W
Sbjct: 81  MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLW 140

Query: 60  ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119
           ITNEIIHNPTVNKRLEEM VQ I VEEG K F VV +GDVV+LPAFGA+VEEM TLN+KN
Sbjct: 141 ITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKN 200

Query: 120 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEY 179
           VQIVDTTCPWVSKVW +VEKHKK DYTS+IHGKY+HEETVATASFAGKYIIVKNMKEA Y
Sbjct: 201 VQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEATY 260

Query: 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL 239
           VCDYILGG+L+GSS TKE FLEKFK AVSKGFDPD DLVKVGIANQTTMLKGETEEIGKL
Sbjct: 261 VCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL 320

Query: 240 VEKTMMRKFGVEN 252
           +EKTMM+K+GVEN
Sbjct: 321 LEKTMMQKYGVEN 333

Length = 460
>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>gnl|CDD|217018 pfam02401, LYTB, LytB protein Back     alignment and domain information
>gnl|CDD|223832 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|232878 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>gnl|CDD|237075 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>gnl|CDD|234893 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
PLN02821460 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red 100.0
PRK13371387 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
COG0761294 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 100.0
PRK00087 647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 96.93
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 95.95
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 95.54
PRK00087 647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 94.59
PRK13371387 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 94.45
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 93.6
COG0761294 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu 92.06
PLN02821460 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red 90.46
PF02602231 HEM4: Uroporphyrinogen-III synthase HemD; InterPro 90.02
COG1587248 HemD Uroporphyrinogen-III synthase [Coenzyme metab 89.48
PRK05928249 hemD uroporphyrinogen-III synthase; Reviewed 86.69
COG1023300 Gnd Predicted 6-phosphogluconate dehydrogenase [Ca 83.84
COG3980318 spsG Spore coat polysaccharide biosynthesis protei 83.1
PF02571249 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: 81.54
PRK08057248 cobalt-precorrin-6x reductase; Reviewed 81.43
PRK05752255 uroporphyrinogen-III synthase; Validated 80.46
PF1454278 Acetyltransf_CG: GCN5-related N-acetyl-transferase 80.22
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
Probab=100.00  E-value=2.6e-85  Score=643.59  Aligned_cols=284  Identities=77%  Similarity=1.181  Sum_probs=267.0

Q ss_pred             CCccc-cchHHHHHHhcCceeeeeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCc
Q 022297            1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV   79 (299)
Q Consensus         1 ~~~~~-~s~~~~~~~~~~~~~~~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV   79 (299)
                      |+++| +|++|+.||++|+.++||.|+|++|+++||||||+|||++|+++++++++++||+||||||||+|+++|+++||
T Consensus        81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV  160 (460)
T PLN02821         81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV  160 (460)
T ss_pred             hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence            57899 99999999999999999999999999999999999999999999877767899999999999999999999999


Q ss_pred             EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCccee
Q 022297           80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV  159 (299)
Q Consensus        80 ~~v~~~~~~~~~~ei~~g~~VIIRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~  159 (299)
                      +++++.++..+++++++|++|||||||+||++++.|+++|+.|||||||||+|+|+.|+++.++||++||+|+++||||+
T Consensus       161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~  240 (460)
T PLN02821        161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV  240 (460)
T ss_pred             EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence            99987655567889998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCeEEEEcChhhHHhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHH
Q 022297          160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL  239 (299)
Q Consensus       160 Gi~g~~~~~~vv~~~~e~~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~  239 (299)
                      |+.||+++++||++++|++++|+|++.+|+.++.++++.|+++|+.++|++|||+.++.+++|+|||||+.++|++|+++
T Consensus       241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~  320 (460)
T PLN02821        241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL  320 (460)
T ss_pred             ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999876778999999999999999999999


Q ss_pred             HHHHhhhccCccc-------hhhhH-----------HhhcCCceEEEEEcCCCCCcchhHhhhhc
Q 022297          240 VEKTMMRKFGVEN-------MQCIR-----------WLRKRSILSWLLVGGTRAIPHTFKRLQKT  286 (299)
Q Consensus       240 l~~~~~~~~g~~~-------~~ei~-----------~l~~~~vd~~lvvG~~~s~~~~~~~~~~~  286 (299)
                      |++.|+++|||++       +++||           .|.++.+|+||||||+||||  -.||+..
T Consensus       321 l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSN--T~~L~eI  383 (460)
T PLN02821        321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSN--TSHLQEI  383 (460)
T ss_pred             HHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCcc--HHHHHHH
Confidence            9999999999876       46664           77678999999999999995  4567653

>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed Back     alignment and domain information
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>PRK08057 cobalt-precorrin-6x reductase; Reviewed Back     alignment and domain information
>PRK05752 uroporphyrinogen-III synthase; Validated Back     alignment and domain information
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
3dnf_A297 Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diph 3e-15
4eb3_A327 Crystal Structure Of Isph In Complex With Iso-hmbpp 3e-10
3f7t_A328 Structure Of Active Isph Shows A Novel Fold With A 3e-10
3t0g_A328 Isph:hmbpp (Substrate) Structure Of The T167c Mutan 3e-10
4h4c_A323 Isph In Complex With (e)-4-fluoro-3-methylbut-2-eny 3e-10
3urk_A324 Isph In Complex With Propynyl Diphosphate (1061) Le 4e-10
3t0f_A328 Isph:hmbpp (Substrate) Structure Of The E126d Mutan 7e-10
3szu_A328 Isph:hmbpp Complex Structure Of E126q Mutant Length 7e-10
3zgl_A332 Crystal Structures Of Escherichia Coli Isph In Comp 2e-09
3ke8_A326 Crystal Structure Of Isph:hmbpp-Complex Length = 32 2e-09
>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate Reductase, The Terminal Enzyme Of The Non-mevalonate Pathway Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 12/156 (7%)
Query: 25  VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
           V + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V     
Sbjct: 2   VDIIIAEHAGFCFGVKRAVKLAEESLKE-SQGKVYTLGPIIHNPQEVNRLKNLGVFPSQG 60
Query: 85  EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
           EE K+       GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  
Sbjct: 61  EEFKE-------GDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREG 113
Query: 145 YTSIIHGKYSHEETVATASFA----GKYIIVKNMKE 176
           Y  ++ G+ +H E + T  +     GK I+V+ +++
Sbjct: 114 YFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLED 149
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp Length = 327 Back     alignment and structure
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A [3fe-4s] Cluster In The Catalytic Centre Length = 328 Back     alignment and structure
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant Length = 328 Back     alignment and structure
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl Diphosphate Length = 323 Back     alignment and structure
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061) Length = 324 Back     alignment and structure
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant Length = 328 Back     alignment and structure
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant Length = 328 Back     alignment and structure
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex With Ambpp A Potent Inhibitor Of The Methylerythritol Phosphate Pathway Length = 332 Back     alignment and structure
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 4e-26
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 5e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Length = 297 Back     alignment and structure
 Score =  103 bits (260), Expect = 4e-26
 Identities = 45/157 (28%), Positives = 84/157 (53%), Gaps = 12/157 (7%)

Query: 26  KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85
            + +AE  GFC+GV+RAV++A E+ K+  + K++    IIHNP    RL+ + V      
Sbjct: 3   DIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVF---PS 58

Query: 86  EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145
           +     +   +GD V++ + G   E+   L  K ++++D TCP+V  V  +V +  +  Y
Sbjct: 59  Q----GEEFKEGDTVIIRSHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGY 114

Query: 146 TSIIHGKYSHEETVATA----SFAGKYIIVKNMKEAE 178
             ++ G+ +H E + T     +  GK I+V+ +++  
Sbjct: 115 FVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIG 151
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 100.0
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 100.0
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 95.88
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 95.45
3d8t_A286 Uroporphyrinogen-III synthase; heme biosynthesis, 88.72
2xdq_A460 Light-independent protochlorophyllide reductase S; 82.58
1wcw_A261 Uroporphyrinogen III synthase; congenital erythrop 81.77
1s3l_A190 Hypothetical protein MJ0936; phosphodiesterase, nu 80.71
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-71  Score=527.23  Aligned_cols=221  Identities=24%  Similarity=0.345  Sum_probs=199.4

Q ss_pred             eeceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeeccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEE
Q 022297           22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV  101 (299)
Q Consensus        22 ~~~M~IilA~~~GFC~GVkRAV~~a~~~~~~~~~~~VytlG~LIHN~~Vv~~L~~~GV~~v~~~~~~~~~~ei~~g~~VI  101 (299)
                      -|.|.|++|+++||||||+|||++|+++++++ +.+||++|||||||+|+++|+++|+.++++      ++++++|++||
T Consensus        10 ~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve~------l~ev~~g~~VI   82 (328)
T 3szu_A           10 HGSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFIEQ------ISEVPDGAILI   82 (328)
T ss_dssp             ---CEEEECSSCSCCHHHHHHHHHHHHHHHHH-CSCEEEESCSSSCHHHHHHHHHTTEEEESS------GGGSCTTCEEE
T ss_pred             CCceEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCccCHHHHHHHHHCCCEEecc------hhhCCCCCEEE
Confidence            47899999999999999999999999999876 458999999999999999999999999974      68889999999


Q ss_pred             EcCCCCCHHHHHHHHhcCCeEEeCCChhhHHHHHHHHHHhhCCCeEEEEecCCCcceeeecccC--C--eEEEEcChhhH
Q 022297          102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKEA  177 (299)
Q Consensus       102 IRAHGvs~~v~~~l~~kgl~VIDATCP~V~kv~~~v~~~~~~GY~IVIiGd~~HPEV~Gi~g~~--~--~~~vv~~~~e~  177 (299)
                      |||||+||+++++|+++|++|||||||||+|+|++|++++++||+|||||+++||||+|++||+  +  .+++|++++|+
T Consensus        83 irAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv  162 (328)
T 3szu_A           83 FSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDV  162 (328)
T ss_dssp             ECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHH
T ss_pred             EECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999  3  68999999999


Q ss_pred             HhhhhhhccCccCCCCccHHHHHHHHHHhhcCCCCCCCCCceeEEEEccccChHHHHHHHHHHHHHhhhccCccchhhhH
Q 022297          178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENMQCIR  257 (299)
Q Consensus       178 ~~l~~~~~~~q~~~tt~~~e~f~~~~~~~~~~~~d~~~~~~kv~Iv~QTT~~~~~~~~i~~~l~~~~~~~~g~~~~~ei~  257 (299)
                      +.|.                               + .++.++++++||||+.++|++|+++|++.++...++. .++||
T Consensus       163 ~~l~-------------------------------~-~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~~~~-~ntIC  209 (328)
T 3szu_A          163 WKLT-------------------------------V-KNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPR-KDDIC  209 (328)
T ss_dssp             HHCC-------------------------------C-SCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCBCCS-SCSCC
T ss_pred             HhCC-------------------------------c-CCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccccCC-CCCcC
Confidence            8762                               1 2346999999999999999999999999999988763 37774


Q ss_pred             -----------HhhcCCceEEEEEcCCCCCcchhHhhhh
Q 022297          258 -----------WLRKRSILSWLLVGGTRAIPHTFKRLQK  285 (299)
Q Consensus       258 -----------~l~~~~vd~~lvvG~~~s~~~~~~~~~~  285 (299)
                                 .| ++.+|+||||||+|||  |-+||..
T Consensus       210 ~AT~~RQ~av~~l-A~~vD~miVVGg~nSS--NT~rL~e  245 (328)
T 3szu_A          210 YATTNRQEAVRAL-AEQAEVVLVVGSKNSS--NSNRLAE  245 (328)
T ss_dssp             HHHHHHHHHHHHH-HHHCSEEEEECCTTCH--HHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHhCCEEEEeCCCCCc--hHHHHHH
Confidence                       67 7789999999999999  5567764
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A Back     alignment and structure
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus} Back     alignment and structure
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A Back     alignment and structure
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d1wd7a_254 Probable uroporphyrinogen-III synthase {Thermus th 80.48
>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: HemD-like
superfamily: HemD-like
family: HemD-like
domain: Probable uroporphyrinogen-III synthase
species: Thermus thermophilus [TaxId: 274]

Probab=80.48  E-value=13  Score=30.36  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=56.6

Q ss_pred             CceEEeeccccCHHHHHHHHhcCcEEe--cCCccccccccccCC-CEEEEcCCC-CCHHHHHHHHhcCCeEEeCCC----
Q 022297           56 EKIWITNEIIHNPTVNKRLEEMAVQNI--PVEEGKKQFDVVNKG-DVVVLPAFG-AAVEEMVTLNNKNVQIVDTTC----  127 (299)
Q Consensus        56 ~~VytlG~LIHN~~Vv~~L~~~GV~~v--~~~~~~~~~~ei~~g-~~VIIRAHG-vs~~v~~~l~~kgl~VIDATC----  127 (299)
                      .++++.|+     ..-+.|++.|+...  .+......++.+.++ ..++++.+| ..+...+.|+++|..+....|    
T Consensus        85 ~~i~aVG~-----~Ta~aL~~~G~~~~~~~~~~s~~l~~~~~~~~~~~l~~~~~~~~~~L~~~L~~~G~~v~~v~~Y~t~  159 (254)
T d1wd7a_          85 AFRLARGA-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHL  159 (254)
T ss_dssp             SEEEESSH-----HHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCEEEEEECSSSCCHHHHHHHHHTTEEEEEECSEECC
T ss_pred             CeEEEECH-----HHHHHHHHcCCCCccCCchhHHHHHHHHhcCCCEEEEecccCCcHHHHHHHHhccCcceEEEEeeee
Confidence            57999995     56689999999743  222112233444444 357888887 667888999999988754433    


Q ss_pred             hhhHHHHHHHHHHhhCCCeEEEEe
Q 022297          128 PWVSKVWTSVEKHKKGDYTSIIHG  151 (299)
Q Consensus       128 P~V~kv~~~v~~~~~~GY~IVIiG  151 (299)
                      |.-.......+.+.+.+..+|++-
T Consensus       160 ~~~~~~~~l~~~l~~~~~d~V~ft  183 (254)
T d1wd7a_         160 PDPEGILRLEEALLRGEVDALAFV  183 (254)
T ss_dssp             BCHHHHHHHHHHHHTTCCSEEEES
T ss_pred             ccccChHHHHHHHhcCCceEEEeC
Confidence            433444444555555555555543