Citrus Sinensis ID: 022399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MLQNPSFPWLLHLSGFFSQRNWNCKTKHLQPLASPISSGKLMRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKANYHHG
ccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEcccccccEEEccccccEEEEEcccccHHHHHHHHHHcccccccccccccEEEccccccccccccccccccccccEEEEEEEEccccEEEcccccccHHHHHHHcccccccEEEEEEEEEEEcccEEEEEEEcc
ccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccHHHHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHcccccccEEEEEcccccccccEEccccEEEEcccccccEEEEEcccccEEEEccHHHHHHHHHHHHHccccccccccEEEEEEHcHcccccccccccccccccccEEEEEEEEcccEEEEEcccccHHHHHHHHccccccEEEEEEEEEEccccccEEcccccc
mlqnpsfpwllhLSGFfsqrnwncktkhlqplaspissgklmRYTAASFLRQNNMLFIRSFMVLFLCCITVKInlcfsgipyslktltldghlnfdEVHNAARdfgnryqllpsavlhpnsvsDIATTVKHIWEmgshseltvaarghghslqgqAQAHQGVVINmeslqgpkmqvyaENSFYVDVSGGELWINILHESVkyglapkswtdyLHLTVggtlsnagisgqafqhgpqisnvhqlevvtgkgeiincsekqnSELFHSVLGGLGQFGIITRarislepapdmvkanyhhg
MLQNPSFPWLLHLSGFFSQRNWNCKTKHLQPLASPISSGKLMRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARIslepapdmvkanyhhg
MLQNPSFPWLLHLSGFFSQRNWNCKTKHLQPLASPISSGKLMRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKANYHHG
******FPWLLHLSGFFSQRNWNCKTKHLQPLASPISSGKLMRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARG**********AHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISL**************
****PSFPWLLHLSGFFSQRNWN*********************TAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKANYHHG
MLQNPSFPWLLHLSGFFSQRNWNCKTKHLQPLASPISSGKLMRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKANYHHG
***NPSFPWLLHLSGFFSQRNWNCKTKHLQPLASPISSGKLMRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKANY***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLQNPSFPWLLHLSGFFSQRNWNCKTKHLQPLASPISSGKLMRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKANYHHG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query298 2.2.26 [Sep-21-2011]
Q9LY71 533 Cytokinin dehydrogenase 6 yes no 0.842 0.470 0.727 1e-106
O22213 575 Cytokinin dehydrogenase 1 no no 0.832 0.431 0.665 9e-98
Q75K78 521 Cytokinin dehydrogenase 9 yes no 0.714 0.408 0.694 9e-86
Q5JLP4 529 Cytokinin dehydrogenase 4 no no 0.704 0.396 0.661 7e-80
Q67YU0 540 Cytokinin dehydrogenase 5 no no 0.791 0.437 0.520 8e-61
Q9T0N8 534 Cytokinin dehydrogenase 1 N/A no 0.691 0.385 0.537 3e-57
Q9FUJ1 524 Cytokinin dehydrogenase 7 no no 0.634 0.360 0.568 2e-55
Q9LTS3 523 Cytokinin dehydrogenase 3 no no 0.647 0.369 0.551 4e-55
Q0JQ12 532 Cytokinin dehydrogenase 1 no no 0.637 0.357 0.528 1e-54
Q6YW50 524 Cytokinin dehydrogenase 7 no no 0.761 0.433 0.464 1e-54
>sp|Q9LY71|CKX6_ARATH Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana GN=CKX6 PE=2 SV=2 Back     alignment and function desciption
 Score =  384 bits (985), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/253 (72%), Positives = 214/253 (84%), Gaps = 2/253 (0%)

Query: 42  MRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNA 101
           M Y  AS LR+  ML +RSF +L L CI  K+  CFS    SLK L L GHL F+ VH+A
Sbjct: 1   MSYLHASLLRKRTMLIVRSFTILLLSCIAFKLACCFSSSISSLKALPLVGHLEFEHVHHA 60

Query: 102 ARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG 161
           ++DFGNRYQL+P AVLHP SVSDIA+T++HIW MG+HS+LTVAARG GHSLQGQAQ   G
Sbjct: 61  SKDFGNRYQLIPLAVLHPKSVSDIASTIRHIWMMGTHSQLTVAARGRGHSLQGQAQTRHG 120

Query: 162 VVINMESLQGPKMQVYAENSF--YVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGG 219
           +VI+MESL   K+QVY+ +S   YVDVSGGELWINILHE++KYGLAPKSWTDYLHLTVGG
Sbjct: 121 IVIHMESLHPQKLQVYSVDSPAPYVDVSGGELWINILHETLKYGLAPKSWTDYLHLTVGG 180

Query: 220 TLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITR 279
           TLSNAGISGQAF+HGPQISNVHQLE+VTGKGEI+NC+++QNS+LF+ VLGGLGQFGIITR
Sbjct: 181 TLSNAGISGQAFRHGPQISNVHQLEIVTGKGEILNCTKRQNSDLFNGVLGGLGQFGIITR 240

Query: 280 ARISLEPAPDMVK 292
           ARI+LEPAP MVK
Sbjct: 241 ARIALEPAPTMVK 253
Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: 2
>sp|O22213|CKX1_ARATH Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1 Back     alignment and function description
>sp|Q75K78|CKX9_ORYSJ Cytokinin dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CKX9 PE=2 SV=1 Back     alignment and function description
>sp|Q5JLP4|CKX4_ORYSJ Cytokinin dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CKX4 PE=2 SV=1 Back     alignment and function description
>sp|Q67YU0|CKX5_ARATH Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9T0N8|CKX1_MAIZE Cytokinin dehydrogenase 1 OS=Zea mays GN=CKX1 PE=1 SV=2 Back     alignment and function description
>sp|Q9FUJ1|CKX7_ARATH Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana GN=CKX7 PE=1 SV=1 Back     alignment and function description
>sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1 Back     alignment and function description
>sp|Q0JQ12|CKX1_ORYSJ Cytokinin dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CKX1 PE=2 SV=2 Back     alignment and function description
>sp|Q6YW50|CKX7_ORYSJ Cytokinin dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CKX7 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query298
224075800 517 cytokinin oxidase [Populus trichocarpa] 0.798 0.460 0.823 1e-116
255544111 530 Cytokinin dehydrogenase, putative [Ricin 0.842 0.473 0.796 1e-116
224114195 530 cytokinin oxidase [Populus trichocarpa] 0.842 0.473 0.788 1e-115
449451894 547 PREDICTED: cytokinin dehydrogenase 6-lik 0.885 0.482 0.742 1e-115
296085116 607 unnamed protein product [Vitis vinifera] 0.848 0.416 0.782 1e-112
225449955 529 PREDICTED: cytokinin dehydrogenase 6 [Vi 0.842 0.474 0.784 1e-112
255644805 490 unknown [Glycine max] 0.879 0.534 0.713 1e-107
356539470 552 PREDICTED: cytokinin dehydrogenase 6-lik 0.879 0.474 0.713 1e-106
357458651 547 Cytokinin dehydrogenase [Medicago trunca 0.885 0.482 0.691 1e-105
145339819 533 cytokinin oxidase/dehydrogenase 6 [Arabi 0.842 0.470 0.727 1e-104
>gi|224075800|ref|XP_002304773.1| cytokinin oxidase [Populus trichocarpa] gi|222842205|gb|EEE79752.1| cytokinin oxidase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/238 (82%), Positives = 223/238 (93%)

Query: 55  MLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNAARDFGNRYQLLPS 114
           MLFIRSFM+LFLCC+T++INLCFS  P SL+TL++DGH +FD+VH+AA+DFGNR+QLLP 
Sbjct: 1   MLFIRSFMILFLCCMTIRINLCFSSNPSSLRTLSVDGHFSFDDVHHAAKDFGNRFQLLPL 60

Query: 115 AVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKM 174
           AVL+P SVSDIATT++HIW+MG +SELTVAARGH HSLQGQAQAHQGVVINMESLQGPKM
Sbjct: 61  AVLYPKSVSDIATTIRHIWQMGPNSELTVAARGHSHSLQGQAQAHQGVVINMESLQGPKM 120

Query: 175 QVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHG 234
            VY  N+ YVD SGGELWI+IL E ++YGLAPKSWTDYLHLTVGGTLSNAG+SGQAF+HG
Sbjct: 121 HVYTGNNPYVDASGGELWIDILRECLEYGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHG 180

Query: 235 PQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVK 292
           PQISNVHQ+EVVTGKGE++NCSEKQNS+LFHSVLGGLGQFGIITRARISLEPAPDMVK
Sbjct: 181 PQISNVHQMEVVTGKGEVLNCSEKQNSDLFHSVLGGLGQFGIITRARISLEPAPDMVK 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544111|ref|XP_002513118.1| Cytokinin dehydrogenase, putative [Ricinus communis] gi|223548129|gb|EEF49621.1| Cytokinin dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224114195|ref|XP_002332424.1| cytokinin oxidase [Populus trichocarpa] gi|222832377|gb|EEE70854.1| cytokinin oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449451894|ref|XP_004143695.1| PREDICTED: cytokinin dehydrogenase 6-like [Cucumis sativus] gi|449532192|ref|XP_004173066.1| PREDICTED: cytokinin dehydrogenase 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296085116|emb|CBI28611.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225449955|ref|XP_002270841.1| PREDICTED: cytokinin dehydrogenase 6 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255644805|gb|ACU22904.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356539470|ref|XP_003538221.1| PREDICTED: cytokinin dehydrogenase 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357458651|ref|XP_003599606.1| Cytokinin dehydrogenase [Medicago truncatula] gi|355488654|gb|AES69857.1| Cytokinin dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|145339819|ref|NP_191903.3| cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana] gi|322510019|sp|Q9LY71.2|CKX6_ARATH RecName: Full=Cytokinin dehydrogenase 6; AltName: Full=Cytokinin oxidase 6; Short=AtCKX6; Short=AtCKX7; Short=CKO6; Flags: Precursor gi|332646961|gb|AEE80482.1| cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query298
TAIR|locus:2087423 533 CKX6 "cytokinin oxidase/dehydr 0.842 0.470 0.727 1.5e-97
TAIR|locus:2062714 575 CKX1 "cytokinin oxidase/dehydr 0.818 0.424 0.675 1.6e-88
UNIPROTKB|Q5JLP4 529 CKX4 "Cytokinin dehydrogenase 0.704 0.396 0.666 8.1e-76
TAIR|locus:2018437 540 CKX5 "cytokinin oxidase 5" [Ar 0.771 0.425 0.528 9.3e-59
UNIPROTKB|Q5ZAY9 534 CKX5 "Cytokinin dehydrogenase 0.771 0.430 0.504 1.6e-54
UNIPROTKB|Q8LNV6 527 CKX3 "Cytokinin dehydrogenase 0.768 0.434 0.504 2.4e-53
TAIR|locus:1005716173 524 CKX7 "cytokinin oxidase 7" [Ar 0.634 0.360 0.573 4.4e-52
TAIR|locus:2164615 523 CKX3 "cytokinin oxidase 3" [Ar 0.647 0.369 0.551 9.2e-52
TAIR|locus:2134423 524 CKX4 "cytokinin oxidase 4" [Ar 0.704 0.400 0.5 4.6e-50
TAIR|locus:2050349 501 CKX2 "cytokinin oxidase 2" [Ar 0.751 0.447 0.463 2.9e-48
TAIR|locus:2087423 CKX6 "cytokinin oxidase/dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 184/253 (72%), Positives = 214/253 (84%)

Query:    42 MRYTAASFLRQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVHNA 101
             M Y  AS LR+  ML +RSF +L L CI  K+  CFS    SLK L L GHL F+ VH+A
Sbjct:     1 MSYLHASLLRKRTMLIVRSFTILLLSCIAFKLACCFSSSISSLKALPLVGHLEFEHVHHA 60

Query:   102 ARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG 161
             ++DFGNRYQL+P AVLHP SVSDIA+T++HIW MG+HS+LTVAARG GHSLQGQAQ   G
Sbjct:    61 SKDFGNRYQLIPLAVLHPKSVSDIASTIRHIWMMGTHSQLTVAARGRGHSLQGQAQTRHG 120

Query:   162 VVINMESLQGPKMQVYAENSF--YVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGG 219
             +VI+MESL   K+QVY+ +S   YVDVSGGELWINILHE++KYGLAPKSWTDYLHLTVGG
Sbjct:   121 IVIHMESLHPQKLQVYSVDSPAPYVDVSGGELWINILHETLKYGLAPKSWTDYLHLTVGG 180

Query:   220 TLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITR 279
             TLSNAGISGQAF+HGPQISNVHQLE+VTGKGEI+NC+++QNS+LF+ VLGGLGQFGIITR
Sbjct:   181 TLSNAGISGQAFRHGPQISNVHQLEIVTGKGEILNCTKRQNSDLFNGVLGGLGQFGIITR 240

Query:   280 ARISLEPAPDMVK 292
             ARI+LEPAP MVK
Sbjct:   241 ARIALEPAPTMVK 253
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009690 "cytokinin metabolic process" evidence=IEA
GO:0009823 "cytokinin catabolic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0019139 "cytokinin dehydrogenase activity" evidence=IEA;ISS;TAS
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010103 "stomatal complex morphogenesis" evidence=TAS
TAIR|locus:2062714 CKX1 "cytokinin oxidase/dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JLP4 CKX4 "Cytokinin dehydrogenase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2018437 CKX5 "cytokinin oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZAY9 CKX5 "Cytokinin dehydrogenase 5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LNV6 CKX3 "Cytokinin dehydrogenase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:1005716173 CKX7 "cytokinin oxidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164615 CKX3 "cytokinin oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134423 CKX4 "cytokinin oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050349 CKX2 "cytokinin oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LY71CKX6_ARATH1, ., 5, ., 9, 9, ., 1, 20.72720.84220.4709yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.5.99.120.824
3rd Layer1.5.990.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.02200015
cytokinin oxidase (EC-1.5.99.12) (530 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
PLN02441 525 PLN02441, PLN02441, cytokinin dehydrogenase 1e-158
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 3e-24
COG0277 459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 4e-22
TIGR01679 419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 5e-09
TIGR01678 438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 1e-08
TIGR00387 413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 0.001
PLN02805 555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.004
>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase Back     alignment and domain information 
 Score =  450 bits (1160), Expect = e-158
 Identities = 151/248 (60%), Positives = 191/248 (77%), Gaps = 8/248 (3%)

Query: 51  RQNNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFDEVH--NAARDFGNR 108
            ++ ML +R  ++LFL  +T  + LC S      K L+LDGHL+FD V   +A++DFGN 
Sbjct: 1   AKSLMLSLRLLLILFLSSLTSSVGLCSSPSSLLPKLLSLDGHLSFDPVSTASASKDFGNL 60

Query: 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMES 168
              LP+AVL+P+SV DIA+ V+  +  GS S LTVAARGHGHSL GQAQA  GVV++M S
Sbjct: 61  VHSLPAAVLYPSSVEDIASLVRAAY--GSSSPLTVAARGHGHSLNGQAQAPGGVVVDMRS 118

Query: 169 LQG----PKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNA 224
           L+G    P + V + +  YVDVSGGELWI++L  ++K+GLAP+SWTDYL+LTVGGTLSNA
Sbjct: 119 LRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNA 178

Query: 225 GISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISL 284
           GISGQAF+HGPQISNV +L+VVTGKGE++ CS  QNS+LF +VLGGLGQFGIITRARI+L
Sbjct: 179 GISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIAL 238

Query: 285 EPAPDMVK 292
           EPAP  V+
Sbjct: 239 EPAPKRVR 246

Length = 525
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 298
PLN02441 525 cytokinin dehydrogenase 100.0
KOG1231 505 consensus Proteins containing the FAD binding doma 100.0
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230 499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01678 438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679 419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
PLN02805 555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
COG0277 459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 100.0
TIGR00387 413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282 352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PRK11183 564 D-lactate dehydrogenase; Provisional 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.96
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.94
KOG4730 518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.93
KOG1232 511 consensus Proteins containing the FAD binding doma 99.92
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.91
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.91
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.89
PRK13903 363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.89
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
KOG1233 613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.84
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.82
PRK00046 334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.81
PRK14648 354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.79
KOG1262 543 consensus FAD-binding protein DIMINUTO [General fu 99.68
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.49
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 97.38
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 97.0
PRK09799258 putative oxidoreductase; Provisional 96.87
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 96.61
PLN02906 1319 xanthine dehydrogenase 95.81
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 95.79
TIGR03195 321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 95.3
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 94.99
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 94.9
COG1319284 CoxM Aerobic-type carbon monoxide dehydrogenase, m 94.02
PLN00192 1344 aldehyde oxidase 92.88
COG4630 493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 91.7
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-45  Score=363.50  Aligned_cols=241  Identities=61%  Similarity=0.953  Sum_probs=218.4

Q ss_pred             hhHHHHHHHHHHHhhhccccccccccCchhhhccccCCCeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHH
Q 022399           53 NNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVK  130 (298)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~l~~l~~~g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk  130 (298)
                      .....+++++++++++.+.....|++........+.+.+++.+|  ++..+++||++.+...|.+|++|+|++||+++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr   82 (525)
T PLN02441          3 SLMLSLRLLLILFLSSLTSSVGLCSSPSSLLPKLLSLDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVR   82 (525)
T ss_pred             chHHHHHHHHHHHHHHhhhccCcccCcccccccccccCceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHH
Confidence            44566899999999999999888876333333334468999988  7888999999999999999999999999999999


Q ss_pred             HHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCC-----eEEEcCCCceEEEEcCCccHHHHHHHHHhCCCc
Q 022399          131 HIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGP-----KMQVYAENSFYVDVSGGELWINILHESVKYGLA  205 (298)
Q Consensus       131 ~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i-----~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~  205 (298)
                      .|++  +.++++|++||+|||+.|++...+|++|||++||++     .++++.+. .+|+|+||++|.++++++.++|++
T Consensus        83 ~A~~--~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~Ln~i~~~~~ii~vd~~~-~~VtV~aG~~~~dv~~~l~~~Gla  159 (525)
T PLN02441         83 AAYG--SSSPLTVAARGHGHSLNGQAQAPGGVVVDMRSLRGGVRGPPVIVVSGDG-PYVDVSGGELWIDVLKATLKHGLA  159 (525)
T ss_pred             HHhh--ccCCceEEEECCCcCCCCCccCCCeEEEECCCCCCcCccCceEEEcCCC-CEEEEcCCCCHHHHHHHHHHCCCc
Confidence            9973  127899999999999999999888999999999992     26788777 899999999999999999999999


Q ss_pred             cccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCCCCchhHHHHhcCCCCceEEEEEEEEeE
Q 022399          206 PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLE  285 (298)
Q Consensus       206 ~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~~~~dLf~a~~gs~G~~GIIt~~tl~l~  285 (298)
                      |++++++..+||||+++++|+|+++++||.+.|+|.++|||+++|++++|++++|+|||||++||+|+|||||++||+++
T Consensus       160 P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~  239 (525)
T PLN02441        160 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALE  239 (525)
T ss_pred             cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeec
Q 022399          286 PAPDMVKANYH  296 (298)
Q Consensus       286 p~~~~~~~~~i  296 (298)
                      |+|+.++|+++
T Consensus       240 Pap~~v~~~~~  250 (525)
T PLN02441        240 PAPKRVRWIRV  250 (525)
T ss_pred             ecCCceEEEEE
Confidence            99999999764

>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion] Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
3s1d_A 516 Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROG 2e-59
2qpm_A 516 Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROG 3e-59
2qkn_A 516 Crystal Structure Of Maize Cytokinin OxidaseDEHYDRO 3e-59
3s1e_A 516 Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROG 3e-59
1w1o_A 534 Native Cytokinin Dehydrogenase Length = 534 4e-59
3s1f_A 516 Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROG 1e-58
2exr_A 524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 7e-55
2bvf_A 459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 3e-12
4aut_A 468 Crystal Structure Of The Tuberculosis Drug Target D 1e-08
4fdn_A 481 Mycobacterium Tuberculosis Dpre1 In Complex With Ct 5e-06
2vfr_A 422 Alditol Oxidase From Streptomyces Coelicolor A3(2): 1e-05
4g3t_A 403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 3e-05
3pm9_A 476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 3e-04
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenosine Length = 516 Back     alignment and structure 
Iteration: 1

 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 150/214 (70%), Gaps = 8/214 (3%)
Query: 81  PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
           P SL  L LDG L  D    AA   DFGN    LP+AVL+P+S +D+   +         
Sbjct: 17  PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
              T+A RG GHSL GQA A  GVV+NM SL      P++ V A+   YVD  G ++WI+
Sbjct: 76  WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
           +L  S+  G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++ 
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAP 288
           CS++ N++LF +VLGGLGQFG+ITRARI++EPAP
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAP 228
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Benzylurea Inhibitor Cpbu Length = 516 Back     alignment and structure
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu Length = 516 Back     alignment and structure
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine Length = 516 Back     alignment and structure
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase Length = 534 Back     alignment and structure
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With N6-Isopentenyladenine Length = 516 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 - Hexagonal Crystal Form Length = 481 Back     alignment and structure
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native Enzyme Length = 422 Back     alignment and structure
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 4e-74
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 2e-68
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 3e-29
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 5e-29
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-26
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 3e-21
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 5e-21
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 7e-21
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 2e-18
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 5e-18
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 7e-18
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 7e-16
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-14
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 3e-14
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 3e-14
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 9e-11
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 7e-09
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-07
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
 Score =  235 bits (601), Expect = 4e-74
 Identities = 112/219 (51%), Positives = 146/219 (66%), Gaps = 6/219 (2%)

Query: 80  IPYSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGS 137
            P SL  L LDG L  D      A+ DFGN    LP+AVL+P+S  D+   +        
Sbjct: 34  WPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPG 93

Query: 138 HSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVY---AENSFYVDVSGGELWIN 194
               T+A RG GHSL GQA A  GVV+NM SL           + +  YVD  G ++WI+
Sbjct: 94  -WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWID 152

Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
           +L  S+  G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++ 
Sbjct: 153 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 212

Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKA 293
           CS++ N++LF +VLGGLGQFG+ITRARI++EPAP   + 
Sbjct: 213 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARW 251
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query298
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 100.0
4bby_A 658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
3tsh_A 500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.98
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.97
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 99.97
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.97
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.97
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.96
1hsk_A 326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.95
3i99_A 357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.94
1uxy_A 340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.92
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.88
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.83
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.83
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 98.19
2w3s_A 462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 98.17
3nvz_B 305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 97.72
1t3q_C 288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 97.59
3hrd_C 296 Nicotinate dehydrogenase FAD-subunit; selenium lig 97.16
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 95.34
1rm6_B 324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 90.71
3zyv_A 1335 AOH1; oxidoreductase, molybdenum cofactor; HET: MT 87.96
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
Probab=100.00  E-value=9.6e-39  Score=317.13  Aligned_cols=214  Identities=53%  Similarity=0.864  Sum_probs=190.9

Q ss_pred             CchhhhccccCCCeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCC-CceEEEeCCCcCCCCC
Q 022399           79 GIPYSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHS-ELTVAARGHGHSLQGQ  155 (298)
Q Consensus        79 ~~~~~l~~l~~~g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~-~~~v~vrGgGhs~~g~  155 (298)
                      +..++|+++.+++++.+|  .+..+.+||+..+...|.+|++|+|++||+++|++|++  ..+ ++|+.++|+|||+.|.
T Consensus        33 ~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~--~~~~~~~v~~~G~G~~~~g~  110 (534)
T 1w1o_A           33 PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANS--TPGWPYTIAFRGRGHSLMGQ  110 (534)
T ss_dssp             -------CTTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHH--CTTCCCCEEEESSCCCSSST
T ss_pred             HHHHHHHhcCCCceEecCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHh--cCCCCceEEEECCCCCCCCC
Confidence            445678877778999998  67789999998889999999999999999999999995  114 8999999999999998


Q ss_pred             ccCCCeEEEEcCCCCCC----eEEEcCCCceEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCcc
Q 022399          156 AQAHQGVVINMESLQGP----KMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAF  231 (298)
Q Consensus       156 ~~~~~gvvIdm~~l~~i----~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~  231 (298)
                      +.+.+|++|||++||+|    .+++++++ .+|+|+||++|.+|++++.++|+.++++++...+||||.++++|.|+.+.
T Consensus       111 ~~~~~gvvi~l~~m~~i~~~~~~~~d~~~-~~v~v~aGv~~~~l~~~~~~~Gl~~~~~~~~~~~tvGG~v~~~g~g~~~~  189 (534)
T 1w1o_A          111 AFAPGGVVVNMASLGDAAAPPRINVSADG-RYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAF  189 (534)
T ss_dssp             TCCTTSEEEEGGGGGCSSSSCSEEECTTS-SEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHH
T ss_pred             cCCCCeEEEECccccccccCccEEEcCCC-CEEEECCCcCHHHHHHHHHHCCCcccCCCCCCCEEeceeccCCCcccccc
Confidence            88778999999999986    36888777 79999999999999999999999988888888899999999888899999


Q ss_pred             ccCcccccEeEEEEEccCCeEEEecCCCCchhHHHHhcCCCCceEEEEEEEEeEeCCCceeeee
Q 022399          232 QHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKANY  295 (298)
Q Consensus       232 ~~G~~~d~V~~levV~~~Gev~~~s~~~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~~~  295 (298)
                      +||.++|+|+++|+|++||+++++++.+++||||+++||.|+|||||+++|+++|.|+...|..
T Consensus       190 ~yG~~~d~v~~~evV~~dG~v~~~~~~~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~  253 (534)
T 1w1o_A          190 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVR  253 (534)
T ss_dssp             HHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEE
T ss_pred             ccccHhhhEEEEEEEeCCccEEEECCCCChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999877654
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 298
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 4e-36
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 8e-17
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 2e-11
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 1e-09
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 2e-09
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score =  126 bits (318), Expect = 4e-36
 Identities = 108/206 (52%), Positives = 141/206 (68%), Gaps = 6/206 (2%)

Query: 87  LTLDGHLNFDEVH--NAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVA 144
           L LDG L  D      A+ DFGN    LP+AVL+P+S  D+   +            T+A
Sbjct: 2   LALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTP-GWPYTIA 60

Query: 145 ARGHGHSLQGQAQAHQGVVINMESLQGPKMQV---YAENSFYVDVSGGELWINILHESVK 201
            RG GHSL GQA A  GVV+NM SL           + +  YVD  G ++WI++L  S+ 
Sbjct: 61  FRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLA 120

Query: 202 YGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNS 261
            G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++ CS++ N+
Sbjct: 121 RGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA 180

Query: 262 ELFHSVLGGLGQFGIITRARISLEPA 287
           +LF +VLGGLGQFG+ITRARI++EPA
Sbjct: 181 DLFDAVLGGLGQFGVITRARIAVEPA 206
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query298
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 100.0
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.97
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.94
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.94
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.91
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 97.19
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 97.07
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.84
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 96.54
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 96.43
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 96.15
d1f0xa1 294 D-lactate dehydrogenase {Escherichia coli [TaxId: 81.88
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.6e-44  Score=315.67  Aligned_cols=196  Identities=56%  Similarity=0.924  Sum_probs=186.2

Q ss_pred             ccCCCeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCC---CceEEEeCCCcCCCCCccCCCe
Q 022399           87 LTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHS---ELTVAARGHGHSLQGQAQAHQG  161 (298)
Q Consensus        87 l~~~g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~---~~~v~vrGgGhs~~g~~~~~~g  161 (298)
                      +.++|+|.+|  .+..+++||++.+...|.+|++|+|++||+++|++|++    +   ++||++||+||++.+.+..+++
T Consensus         2 ~~~~g~v~td~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~----~~~~~~~v~~rggGhs~~g~s~~~~~   77 (206)
T d1w1oa2           2 LALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANS----TPGWPYTIAFRGRGHSLMGQAFAPGG   77 (206)
T ss_dssp             TTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHH----CTTCCCCEEEESSCCCSSSTTCCTTS
T ss_pred             ccCCcEEEcCHHHhhhhEECcccCcccCCCEEEEcCCHHHHHHHHHHHHh----CCCCCeEEEEECCCCCcccCcccCCC
Confidence            5788999999  78889999999899999999999999999999999998    5   6899999999999999888889


Q ss_pred             EEEEcCCCCCCe----EEEcCCCceEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCccccCccc
Q 022399          162 VVINMESLQGPK----MQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQI  237 (298)
Q Consensus       162 vvIdm~~l~~i~----i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~  237 (298)
                      ++|||++||++.    +++|++. .+++||||++|.||.+++.++|+.++..++...+||||+++++|+|+.+.+||..+
T Consensus        78 ividl~~l~~i~~~~~~~id~~~-~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~  156 (206)
T d1w1oa2          78 VVVNMASLGDAAAPPRINVSADG-RYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQI  156 (206)
T ss_dssp             EEEEGGGGGCSSSSCSEEECTTS-SEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGG
T ss_pred             EeeeccccceeeeceeEEEecCC-CEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeeccccceecccccccee
Confidence            999999999873    7899888 89999999999999999999999988888889999999999999999999999999


Q ss_pred             ccEeEEEEEccCCeEEEecCCCCchhHHHHhcCCCCceEEEEEEEEeEeC
Q 022399          238 SNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPA  287 (298)
Q Consensus       238 d~V~~levV~~~Gev~~~s~~~~~dLf~a~~gs~G~~GIIt~~tl~l~p~  287 (298)
                      |+|+++|+|+++|+++++++++++||||+++|++|+|||||+++||++|+
T Consensus       157 d~v~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         157 SNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             GSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEEC
T ss_pred             eeeeEEEEEcCCCcEEEECCCCCHHHHHHHhhCCCccEeEEEEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999996
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure