Citrus Sinensis ID: 022402

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------

MLTSELRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

ccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHcccccHHHHHHHccccccEEEEEccccc

ccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccEccHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHccHHHccccccEEEEEcccccccEcHHHccHHHHHHHHcccEEEEEccccHEHHccccEEcHHHEEEEEEccHHHHHHHcccEEEEEEEEccccc

MLTSELRNLLKEILEDMkkdpethggppdcILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLAScqnlvprpwviddleTFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAandlpsindvtyPELIEIMSKLKDekgqlmgvdtsklliansgndlpviDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQfkcdslkigmvkhpevaqflggrlYDCVFKYNEVSS

MLTSELRNLLKEILEdmkkdpethggppDCILLCRLREQVLRELGFRdifkkvkdeenakaislfgdvvrlndVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVilaandlpsindvTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

MLTSELRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFkvkwskkawkkavIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS

****************************DCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYN****

**TSELRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE***

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		297	2.2.26 [Sep-21-2011]
Q949P3		367	Uncharacterized protein A	no	no	0.959	0.776	0.866	1e-144
Q9NVE7		773	Pantothenate kinase 4 OS=	yes	no	0.932	0.358	0.378	1e-47
Q5R5F8		773	Pantothenate kinase 4 OS=	yes	no	0.932	0.358	0.378	1e-47
Q8L5Y9		901	Pantothenate kinase 2 OS=	no	no	0.882	0.290	0.4	4e-47
Q4R4U1		773	Pantothenate kinase 4 OS=	N/A	no	0.932	0.358	0.378	6e-47
Q923S8		773	Pantothenate kinase 4 OS=	yes	no	0.858	0.329	0.388	3e-46
Q80YV4		820	Pantothenate kinase 4 OS=	no	no	0.932	0.337	0.327	6e-41

>sp\|Q949P3\|Y2734_ARATH Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1	Back alignment and function desciption

 Score =  509 bits (1311), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/285 (86%), Positives = 268/285 (94%)

Query: 13  ILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLN 72
           ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF  VV L+
Sbjct: 83  ILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLS 142

Query: 73  DVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLET 132
           D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLASCQNLVPRPWVIDDLE 
Sbjct: 143 DAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLEN 202

Query: 133 FKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPEL 192
           F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSIND+T  EL
Sbjct: 203 FQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTEL 262

Query: 193 IEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGR 252
            EI+S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADLVI+EGMGR
Sbjct: 263 TEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGR 322

Query: 253 GIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 297
           GIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV S
Sbjct: 323 GIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9NVE7\|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1	Back alignment and function description

>sp\|Q5R5F8\|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1	Back alignment and function description

>sp\|Q8L5Y9\|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2	Back alignment and function description

>sp\|Q4R4U1\|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2	Back alignment and function description

>sp\|Q923S8\|PANK4_RAT Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1	Back alignment and function description

>sp\|Q80YV4\|PANK4_MOUSE Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		297
225428330		367	PREDICTED: uncharacterized protein At2g1	0.962	0.779	0.895	1e-149
363806824		367	uncharacterized protein LOC100804454 [Gl	0.962	0.779	0.888	1e-146
297836456		367	hypothetical protein ARALYDRAFT_480618 [	0.959	0.776	0.884	1e-145
297798382		367	hypothetical protein ARALYDRAFT_491111 [	0.962	0.779	0.870	1e-145
21554145		367	unknown [Arabidopsis thaliana]	0.956	0.773	0.873	1e-143
388518505		366	unknown [Lotus japonicus]	0.959	0.778	0.863	1e-143
18418688		367	uncharacterized protein [Arabidopsis tha	0.956	0.773	0.869	1e-143
21554574		367	unknown [Arabidopsis thaliana]	0.959	0.776	0.863	1e-142
449454313		367	PREDICTED: uncharacterized protein At2g1	0.962	0.779	0.891	1e-142
55670842		367	Chain A, X-Ray Structure Of Gene Product	0.959	0.776	0.866	1e-142

>gi\|225428330\|ref\|XP_002283109.1\| PREDICTED: uncharacterized protein At2g17340 [Vitis vinifera] gi\|297744464\|emb\|CBI37726.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/286 (89%), Positives = 275/286 (96%)

Query: 12  EILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRL 71
           EILED+KKDPE+HGGPPDC+LLCRLREQVLRELGFRDIFKKVKDEENAKAISLF +VV L
Sbjct: 82  EILEDLKKDPESHGGPPDCVLLCRLREQVLRELGFRDIFKKVKDEENAKAISLFENVVHL 141

Query: 72  NDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLE 131
           ND IEDE KR+E+L+RGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDL+
Sbjct: 142 NDAIEDESKRLENLVRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLD 201

Query: 132 TFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPE 191
           +FK+KWS+K+WKK +IFVDNSGADIILGILPFARELLR G+QV+LAANDLPSINDVTYPE
Sbjct: 202 SFKLKWSRKSWKKVIIFVDNSGADIILGILPFARELLRCGSQVVLAANDLPSINDVTYPE 261

Query: 192 LIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMG 251
           LIEI++KLKDE GQL+GVDTS LLIANSGNDLPVIDLT +SQELAYLASDADLVILEGMG
Sbjct: 262 LIEIIAKLKDENGQLVGVDTSNLLIANSGNDLPVIDLTRISQELAYLASDADLVILEGMG 321

Query: 252 RGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 297
           RGIETNLYAQFKCDSLKIGMVKH EVAQFLGGRLYDCVFKYNEV S
Sbjct: 322 RGIETNLYAQFKCDSLKIGMVKHLEVAQFLGGRLYDCVFKYNEVLS 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|363806824\|ref\|NP_001242288.1\| uncharacterized protein LOC100804454 [Glycine max] gi\|255641170\|gb\|ACU20862.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|297836456\|ref\|XP_002886110.1\| hypothetical protein ARALYDRAFT_480618 [Arabidopsis lyrata subsp. lyrata] gi\|297331950\|gb\|EFH62369.1\| hypothetical protein ARALYDRAFT_480618 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297798382\|ref\|XP_002867075.1\| hypothetical protein ARALYDRAFT_491111 [Arabidopsis lyrata subsp. lyrata] gi\|297312911\|gb\|EFH43334.1\| hypothetical protein ARALYDRAFT_491111 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|21554145\|gb\|AAM63225.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|388518505\|gb\|AFK47314.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|18418688\|ref\|NP_567984.1\| uncharacterized protein [Arabidopsis thaliana] gi\|17063179\|gb\|AAL32984.1\| unknown protein [Arabidopsis thaliana] gi\|23506025\|gb\|AAN28872.1\| At4g35360/F23E12_80 [Arabidopsis thaliana] gi\|332661103\|gb\|AEE86503.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21554574\|gb\|AAM63619.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449454313\|ref\|XP_004144900.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus] gi\|449471318\|ref\|XP_004153274.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus] gi\|449500143\|ref\|XP_004161016.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|55670842\|pdb\|1XFI\|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 gi\|150261469\|pdb\|2Q40\|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At2g17340	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		297
TAIR\|locus:2122123		367	AT4G35360 "AT4G35360" [Arabido	0.956	0.773	0.841	1.1e-124
TAIR\|locus:2827544		367	AT2G17340 "AT2G17340" [Arabido	0.959	0.776	0.838	4.9e-124
TAIR\|locus:2827582		361	AT2G17320 "AT2G17320" [Arabido	0.956	0.786	0.788	6.4e-115
WB\|WBGene00006862		755	pnk-4 [Caenorhabditis elegans	0.973	0.382	0.366	8.4e-47
TAIR\|locus:2116490		901	PANK2 "pantothenate kinase 2"	0.612	0.201	0.376	1.3e-46
UNIPROTKB\|E2QXZ0		773	PANK4 "Uncharacterized protein	0.932	0.358	0.371	2.2e-45
UNIPROTKB\|I3LPY8		780	PANK4 "Uncharacterized protein	0.932	0.355	0.363	6.5e-45
UNIPROTKB\|E9PHT6		734	PANK4 "Pantothenate kinase 4"	0.932	0.377	0.371	7.1e-45
UNIPROTKB\|Q9NVE7		773	PANK4 "Pantothenate kinase 4"	0.932	0.358	0.371	1e-44
UNIPROTKB\|F1MLD0		773	PANK4 "Uncharacterized protein	0.932	0.358	0.360	4.7e-44

TAIR\|locus:2122123 AT4G35360 "AT4G35360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
 Identities = 239/284 (84%), Positives = 255/284 (89%)

Query:    12 EILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRL 71
             EILED+KKDPE+HGGPPDCILLCR+RE +LRELGFRDIFKKVKDEENAKAISLF +VVRL
Sbjct:    82 EILEDLKKDPESHGGPPDCILLCRIRELILRELGFRDIFKKVKDEENAKAISLFPEVVRL 141

Query:    72 NDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLE 131
             +D I DEGKR+E+L+RGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLV RPWVIDDL+
Sbjct:   142 SDAINDEGKRIENLVRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVSRPWVIDDLD 201

Query:   132 TFXXXXXXXXXXXXXIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPE 191
              F             IFVDNSGADIILGILPFARE+LR G QV+LAAN+LPSINDVTY E
Sbjct:   202 NFQARWLKKPWKKAVIFVDNSGADIILGILPFAREMLRLGMQVVLAANELPSINDVTYIE 261

Query:   192 LIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMG 251
             L EI+SKL DE GQLMGVDTS LLIANSGNDLPVIDL  VSQE+AYL+SDADLVILEGMG
Sbjct:   262 LAEILSKLNDENGQLMGVDTSNLLIANSGNDLPVIDLARVSQEVAYLSSDADLVILEGMG 321

Query:   252 RGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEV 295
             RGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCV KYNEV
Sbjct:   322 RGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVIKYNEV 365

GO:0004594 "pantothenate kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

TAIR\|locus:2827544 AT2G17340 "AT2G17340" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2827582 AT2G17320 "AT2G17320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00006862 pnk-4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

TAIR\|locus:2116490 PANK2 "pantothenate kinase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXZ0 PANK4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LPY8 PANK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PHT6 PANK4 "Pantothenate kinase 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NVE7 PANK4 "Pantothenate kinase 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MLD0 PANK4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		297
pfam01937		315	pfam01937, DUF89, Protein of unknown function DUF8	2e-71
PLN02902		876	PLN02902, PLN02902, pantothenate kinase	9e-68
COG1578		285	COG1578, COG1578, Uncharacterized conserved protei	6e-07

>gnl\|CDD\|216798 pfam01937, DUF89, Protein of unknown function DUF89	Back alignment and domain information

 Score =  222 bits (568), Expect = 2e-71
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 14/294 (4%)

Query: 4   SELRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAIS 63
            ++   L E+  +++ DP      P     C L  ++L   G  D FK+ K+  N KA++
Sbjct: 28  KKIIGELSELKAELQTDPPLPPLAPWLFAECYLYRRLLEAFGNYDPFKEQKELSNEKALA 87

Query: 64  LFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPR 123
              ++    + +EDE +  + L++    GNI DLG     E   +D     +  +  + R
Sbjct: 88  AVPELAERLEELEDEEELFKELLKISLWGNIIDLGLLAG-EDSQED---QESELRKALER 143

Query: 124 PWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR--RGTQVILAANDL 181
           P ++DD +    +      K+    +DN+G +++  +L  A ELLR    T+V+L    +
Sbjct: 144 PILVDDTDALWERLKGSRAKRVDYVLDNAGFELVFDLL-LAEELLRSGLATKVVLHVKGI 202

Query: 182 PSINDVTYPELIEIMSKLKDEKGQLMGVDTS----KLLIANSGNDLPVIDLTAVSQELAY 237
           P +NDVT  +   ++ +L D      G+D      KL+ + S    P ID   +S EL  
Sbjct: 203 PFVNDVTMEDAEWLLEQLADHSALGAGLDELLKLGKLIDSGSDFWTPGIDFWEMSPELYE 262

Query: 238 LASDADLVILEGMG--RGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCV 289
             S ADLVI +G    R +  +         L +   K   VA  L G L + +
Sbjct: 263 ELSKADLVIFKGDLNYRKLTGDRDWPPTTPILALRTAKCDVVAGLLVG-LGEKL 315

This family has no known function. Length = 315

>gnl\|CDD\|215489 PLN02902, PLN02902, pantothenate kinase	Back alignment and domain information

>gnl\|CDD\|224494 COG1578, COG1578, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		297
COG1578		285	Uncharacterized conserved protein [Function unknow	100.0
PLN02902		876	pantothenate kinase	100.0
PF01937		355	DUF89: Protein of unknown function DUF89; InterPro	100.0
KOG4584		348	consensus Uncharacterized conserved protein [Gener	100.0
KOG3870		434	consensus Uncharacterized conserved protein [Funct	100.0

>COG1578 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=3.3e-57  Score=404.94  Aligned_cols=251  Identities=23%  Similarity=0.303  Sum_probs=226.1

Q ss_pred             HHHHHHHHHHHHcccCCCCCCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 022402            5 ELRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVES   84 (297)
Q Consensus         5 ~~~~~~~~~~~~l~~~~~~~~~~~e~~l~~~i~~~~~~~~g~~DPf~~~K~~~n~~a~~~~~~l~~~l~~~~~~~~~l~~   84 (297)
                      .+|.++.+.++.+++.......|+  ++..++|+.+++++|+.|||++.|+++|+.|++.++.+++.   +++..++|.+
T Consensus        28 ~~~~~~~~~~~lls~~y~~~~~~a--~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~vr~~---~~~~~~dl~~  102 (285)
T COG1578          28 LRSRIMSEALKLLSEEYGESAVPA--IAGTLIHREVYKILGNEDPYKEYKRRANEIALKVLPKVREN---IEDTPEDLKT  102 (285)
T ss_pred             HHHHHHHHHHHHHHhhhCcCCCcH--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhc---ccCChHHHHH
Confidence            489999999998888522233334  49999999999999999999999999999999999999873   3444578999


Q ss_pred             HHHHHHhhhhhhccchhhhhhhcccCCCHHHHHhhhCCCCCccCcHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHH
Q 022402           85 LIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFA  164 (297)
Q Consensus        85 ~lr~al~GN~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~l~~~L~~~~~~~i~~i~DNaGeeiv~Dll~L~  164 (297)
                      ++++|+.||.||||+.+..      .+++++.+.++++.++.+||++.+.+.|++  + +|+||+||||| ++||++ |+
T Consensus       103 Avk~ai~GN~iDfgv~G~~------~~~lee~~~~~~~~~l~i~d~~k~~~~l~~--a-~VlYl~DNaGE-i~FD~v-li  171 (285)
T COG1578         103 AVKLAIVGNVIDFGVLGFS------PFDLEEEVEKLLDAELYIDDSPKLLELLKN--A-SVLYLTDNAGE-IVFDKV-LI  171 (285)
T ss_pred             HHHHHHHhcceeeccccCC------HhHHHHHHHHhhcCcccccchHHHHHHhcc--C-cEEEEecCCcc-HHHHHH-HH
Confidence            9999999999999998631      367889999999999999999999999985  3 99999999998 999997 99


Q ss_pred             HHHHhCCCEEEEEecCCcccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccCcE
Q 022402          165 RELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADL  244 (297)
Q Consensus       165 ~~L~~~g~~V~~~vK~~P~vnDvT~~D~~~~l~~l~~~d~~l~~l~~~~~~vi~~G~~~~~~~l~~~s~el~~~l~~aDL  244 (297)
                      +.+.++|.+|+++||++|++||||++|+...            ++++ .++||+||+..+|..+.++|.||+++|.+||+
T Consensus       172 e~ik~~~~~vv~vVrg~PIlnDaT~EDak~~------------~i~~-i~~vittG~~~vGi~l~d~s~Ef~~~f~~adl  238 (285)
T COG1578         172 EVIKELGKKVVVVVRGGPILNDATMEDAKEA------------GIDE-IAKVITTGSDIVGIWLEDVSEEFREAFESADL  238 (285)
T ss_pred             HHHHhcCCceEEEEcCCceechhhHHHHHHc------------Ccch-hheeecCCCCcceeeHHhccHHHHHHhccCCE
Confidence            9999999999999999999999999999975            8887 67999999999999999999999999999999


Q ss_pred             EEEecCCCCC------CcccceeeccccccccccCCHHHHHHhCCcccCEEEEe
Q 022402          245 VILEGMGRGI------ETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKY  292 (297)
Q Consensus       245 VI~KG~~Ny~------~~~i~~~f~~~~l~l~~~KC~~va~~lg~~~~~~v~~~  292 (297)
                      ||+||||||+      ++++||+|        +|||++||+.+|||+|+.|++.
T Consensus       239 IIaKG~gNfE~LsE~~~~piffLL--------~AKC~~VAr~lgV~~G~~V~~~  284 (285)
T COG1578         239 IIAKGQGNFETLSEEEDKPIFFLL--------KAKCDPVARELGVPRGANVAKR  284 (285)
T ss_pred             EEecCccccccccccCCCcEEeee--------cccCchHHHHhCCCCCCeeeec
Confidence            9999999993      35898877        6999999999999999999985

>PLN02902 pantothenate kinase	Back alignment and domain information

>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins	Back alignment and domain information

>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>KOG3870 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		297
1xfi_A		367	X-Ray Structure Of Gene Product From Arabidopsis Th		1e-138

>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 Length = 367

Back alignment and structure

Iteration: 1

Score = 486 bits (1250), Expect = e-138, Method: Compositional matrix adjust. Identities = 239/285 (83%), Positives = 258/285 (90%) Query: 13 ILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLN 72 ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF VV L+ Sbjct: 83 ILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLS 142 Query: 73 DVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLET 132 D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLASCQNLVPRPWVIDDLE Sbjct: 143 DAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLEN 202 Query: 133 FXXXXXXXXXXXXXIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPEL 192 F IFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSIND+T EL Sbjct: 203 FQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTEL 262 Query: 193 IEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGR 252 EI+S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADLVI+EGMGR Sbjct: 263 TEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGR 322 Query: 253 GIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 297 GIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV S Sbjct: 323 GIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367

PyMOL of 1xfi

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		297
1xfi_A		367	Unknown protein; structural genomics, protein stru	1e-111
2ffj_A		300	Conserved hypothetical protein; structural genomic	6e-59
2g8l_A		299	287AA long hypothetical protein; structural genomi	5e-58

>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A Length = 367	Back alignment and structure

 Score =  324 bits (832), Expect = e-111
 Identities = 247/293 (84%), Positives = 269/293 (91%)

Query: 5   ELRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISL 64
           +       ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISL
Sbjct: 75  KFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISL 134

Query: 65  FGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRP 124
           F  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLASCQNLVPRP
Sbjct: 135 FPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRP 194

Query: 125 WVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI 184
           WVIDDLE F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSI
Sbjct: 195 WVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSI 254

Query: 185 NDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADL 244
           ND+T  EL EI+S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADL
Sbjct: 255 NDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADL 314

Query: 245 VILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 297
           VI+EGMGRGIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV S
Sbjct: 315 VIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367

PyMOL of 1xfi

>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1 Length = 300	Back alignment and structure

>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1 Length = 299	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		297
1xfi_A		367	Unknown protein; structural genomics, protein stru	100.0
2g8l_A		299	287AA long hypothetical protein; structural genomi	100.0
2ffj_A		300	Conserved hypothetical protein; structural genomic	100.0
3pt1_A		471	UPF0364 protein YMR027W; alpha/beta fold, carbohyd	100.0

>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A	Back alignment and structure

Probab=100.00  E-value=1.7e-67  Score=501.92  Aligned_cols=293  Identities=84%  Similarity=1.307  Sum_probs=255.3

Q ss_pred             HHHHHHHHHHHHcccCCCCCCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 022402            5 ELRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVES   84 (297)
Q Consensus         5 ~~~~~~~~~~~~l~~~~~~~~~~~e~~l~~~i~~~~~~~~g~~DPf~~~K~~~n~~a~~~~~~l~~~l~~~~~~~~~l~~   84 (297)
                      ++.+.|.+.++.+.++|+++++|+.|.+..++++++.+.+|.+|||+++|+++|..|+++++.+.+.+++++++.++|.+
T Consensus        75 ~f~~~~~~~l~~l~~~p~~~g~~~~~r~~~~~~~~il~~~g~~DPf~~~K~~~n~~al~~l~~l~~~l~~~~~~~~~l~~  154 (367)
T 1xfi_A           75 KFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLEN  154 (367)
T ss_dssp             HHHHHHHHHHHHHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCccccCCcchHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            35678888899999999999998788999999999999999999999999999999999999999888777656679999


Q ss_pred             HHHHHHhhhhhhccchhhhhhhcccCCCHHHHHhhhCCCCCccCcHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHH
Q 022402           85 LIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFA  164 (297)
Q Consensus        85 ~lr~al~GN~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~l~~~L~~~~~~~i~~i~DNaGeeiv~Dll~L~  164 (297)
                      ++|+++|||++|||+....+.|+++..++.+.++++.+++|++||++++|++|++.++++|+||+||||+|+|+|++|||
T Consensus       155 llr~al~GN~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~lvdd~~~l~~~L~~~~~k~Vl~v~DNAG~Eiv~D~L~La  234 (367)
T 1xfi_A          155 LVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFA  234 (367)
T ss_dssp             HHHHHHHHHHC---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHH
T ss_pred             HHHHHHHHhccccccccccccccccCCCHHHHHHHhhccCCCcCCHHHHHHHhcccCCCEEEEEecCCCchhhccHHHHH
Confidence            99999999999999987544444445678888888778899999999999999865568999999999988999943599


Q ss_pred             HHHHhCCCEEEEEecCCcccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccCcE
Q 022402          165 RELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADL  244 (297)
Q Consensus       165 ~~L~~~g~~V~~~vK~~P~vnDvT~~D~~~~l~~l~~~d~~l~~l~~~~~~vi~~G~~~~~~~l~~~s~el~~~l~~aDL  244 (297)
                      ++|+++|++|++|||++||+||||++|+.|+|++++.++..++.++++++.|+++|+++||++|+++|++|++.|++|||
T Consensus       235 ~~Ll~~g~kVvl~vK~~P~vnDvT~~D~~~~L~~l~~~~~~L~~l~~g~l~vi~~G~~~~~~~l~~~s~el~~~l~~ADL  314 (367)
T 1xfi_A          235 RELLRRGAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADL  314 (367)
T ss_dssp             HHHHHTTCEEEEEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSE
T ss_pred             HHHHHcCCEEEEEECCcCceeeCCHHHHHHHHHHHHhcchhhhhhccCcEEEEcCCCCCCCcChHHCCHHHHHHHccCCE
Confidence            99999999999999999999999999999999998766566778999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCcccceeeccccccccccCCHHHHHHhCCcccCEEEEeccCCC
Q 022402          245 VILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS  297 (297)
Q Consensus       245 VI~KG~~Ny~~~~i~~~f~~~~l~l~~~KC~~va~~lg~~~~~~v~~~~~~~~  297 (297)
                      ||+||||||+++++++.|+|++++|+++||++||+.+||++|++||+++.+++
T Consensus       315 VI~KG~gNyl~t~~~~~f~~~i~~L~~iKc~~vA~~lg~~~~~~V~~~~~~~~  367 (367)
T 1xfi_A          315 VIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS  367 (367)
T ss_dssp             EEEESHHHHTTBSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC--
T ss_pred             EEEECCCCCCccchhhhcCcchhHHHhhCcHHHHHHhCCCcCCEEEEeCCCCC
Confidence            99999999998998889999999999999999999999999999999998764

PyMOL of 1xfi

>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1	Back alignment and structure

>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1	Back alignment and structure

>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		297
d1xfia_		360	e.50.1.1 (A:) Hypothetical protein At2g17340 {Thal	1e-121
d2ffja1		282	e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Ar	1e-49
d2g8la1		284	e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Py	2e-42

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 360	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  348 bits (894), Expect = e-121
 Identities = 246/285 (86%), Positives = 267/285 (93%)

Query: 11  KEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVR 70
             ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEENAKAISLF  VV 
Sbjct: 76  AGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVS 135

Query: 71  LNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDL 130
           L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLASCQNLVPRPWVIDDL
Sbjct: 136 LSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDL 195

Query: 131 ETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYP 190
           E F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSIND+T  
Sbjct: 196 ENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCT 255

Query: 191 ELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGM 250
           EL EI+S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADLVI+EGM
Sbjct: 256 ELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGM 315

Query: 251 GRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEV 295
           GRGIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV
Sbjct: 316 GRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 360

PyMOL of d1xfia_

>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 282	Back information, alignment and structure

>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus horikoshii [TaxId: 53953]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		297
d1xfia_		360	Hypothetical protein At2g17340 {Thale cress (Arabi	100.0
d2ffja1		282	Hypothetical protein AF1104 {Archaeoglobus fulgidu	100.0
d2g8la1		284	Hypothetical protein PH1575 {Pyrococcus horikoshii	100.0

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-65  Score=478.79  Aligned_cols=290  Identities=85%  Similarity=1.317  Sum_probs=256.9

Q ss_pred             HHHHHHHHHHHcccCCCCCCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 022402            6 LRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESL   85 (297)
Q Consensus         6 ~~~~~~~~~~~l~~~~~~~~~~~e~~l~~~i~~~~~~~~g~~DPf~~~K~~~n~~a~~~~~~l~~~l~~~~~~~~~l~~~   85 (297)
                      +.+.|.+.+..+..+|.++++++.+.+..++++.+.+.+|..|||+++|+++|+.|++.++.+.+.++.+.++.+++.++
T Consensus        71 f~~~y~~~L~~l~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~  150 (360)
T d1xfia_          71 FAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENL  150 (360)
T ss_dssp             HHHHHHHHHHHHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcccCcccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            66788899999999988899998877888999999999999999999999999999999999999998888778899999


Q ss_pred             HHHHHhhhhhhccchhhhhhhcccCCCHHHHHhhhCCCCCccCcHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHH
Q 022402           86 IRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFAR  165 (297)
Q Consensus        86 lr~al~GN~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~l~~~L~~~~~~~i~~i~DNaGeeiv~Dll~L~~  165 (297)
                      +|++++||+||||+....+.++.++.++.+.++++.+++|.+||++.|.++|.+.++++|+|++|||||.+|..++|+++
T Consensus       151 vr~aiAGNifD~Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe~Vfd~lL~~~r  230 (360)
T d1xfia_         151 VRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFAR  230 (360)
T ss_dssp             HHHHHHHHHC---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHH
T ss_pred             HHHHHHHHhhhcccccchhhhccccchHHHHHHHhhcCCCccccHHHHHHHHhcCCcceEEEEecCCchHHHHHHHHHHH
Confidence            99999999999999876666666678999999999999999999999999998766789999999999944444456789


Q ss_pred             HHHhCCCEEEEEecCCcccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccCcEE
Q 022402          166 ELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLV  245 (297)
Q Consensus       166 ~L~~~g~~V~~~vK~~P~vnDvT~~D~~~~l~~l~~~d~~l~~l~~~~~~vi~~G~~~~~~~l~~~s~el~~~l~~aDLV  245 (297)
                      +|+++|++|+++||+.|++||||++|+..++.+++.+++.+.|++++...|++||+..||+++.++|+||.+++++||||
T Consensus       231 ell~~g~~V~l~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~~~~aDLV  310 (360)
T d1xfia_         231 ELLRRGAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLV  310 (360)
T ss_dssp             HHHHTTCEEEEEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEE
T ss_pred             HHhcCCCeEEEEECCCcchhhhhHHHHHHHHHHHhhhhhHhhhhcccceEEecCCCCCCCcChHhCCHHHHHHHhcCCEE
Confidence            99999999999999999999999999999999999999998899988889999999999999999999999999999999


Q ss_pred             EEecCCCCCCcccceeeccccccccccCCHHHHHHhCCcccCEEEEeccC
Q 022402          246 ILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEV  295 (297)
Q Consensus       246 I~KG~~Ny~~~~i~~~f~~~~l~l~~~KC~~va~~lg~~~~~~v~~~~~~  295 (297)
                      |+|||||.+|+|++..|+|++|||+|+||++||+++|+++||+||+++++
T Consensus       311 I~KGMGr~~~tN~~a~f~c~~lkL~~vK~~~vA~~lGg~~~d~V~k~~~~  360 (360)
T d1xfia_         311 IVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV  360 (360)
T ss_dssp             EEESHHHHTTBSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC
T ss_pred             EEcCCcchhhccchhhcCCCeehhhhhcCHHHHHHhCCccccEEEEecCC
Confidence            99999998899999999999999999999999999999999999999875

PyMOL of d1xfia_

>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure