Citrus Sinensis ID: 022430

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHHHHEEEEEEHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHccccccEEEEHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccEEEEEHHEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHccccccccccccccccccccccccccccccccccHccccccccccccccccHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHcc
Coil and Loop (DISEMBL)
MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYvfnpaligsnlAETITYQSLISLWFMPVNILLSFLIGSALAWILIKItrtpphlqglvigccsagnmGNLLLIIVPAvceesnspfgdtsvcsSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNksvsdagtnkdsrihiissgesstniflessrkpllhssdrrspddsqiqaetrstksrfpfLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIgtispfrkvivgesaplrvldssAALVG
Flexible Loop (DISEMBL)
MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIIssgesstniflessrkpllhssdrrspddsqiqaetrstksrfpfldkMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGesaplrvldssaalvg
Low Complexity Region (SEG)
MEILDLFEVALMPIlkvllvtalglvlAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG
Disordered region (IsUnstruct)
**ILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSV**********************************************************FLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRV*********
Disordered Region (DISOPRED)
*EILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNS*FGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLY*****************************************************************DKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG
Disordered Region (DISEMBL)
MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKP*******************RSTKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG
Disordered Region (DISPRO)
*EILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYL************************************************************FPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
118481907	405	unknown [Populus trichocarpa]	0.959	0.703	0.616	5e-97
224115416	388	predicted protein [Populus trichocarpa]	0.902	0.690	0.606	1e-96
296088501	418	unnamed protein product [Vitis vinifera]	0.989	0.703	0.578	4e-94
255575247	390	auxin:hydrogen symporter, putative [Rici	0.848	0.646	0.623	1e-93
224061559	374	predicted protein [Populus trichocarpa]	0.855	0.679	0.572	9e-87
359476971	365	PREDICTED: uncharacterized protein LOC10	0.905	0.736	0.552	1e-85
225431659	418	PREDICTED: uncharacterized transporter C	0.952	0.677	0.519	1e-82
255571127	434	auxin:hydrogen symporter, putative [Rici	0.949	0.649	0.569	1e-78
357517519	403	Transporter, putative [Medicago truncatu	0.946	0.697	0.479	1e-75
255575251	447	auxin:hydrogen symporter, putative [Rici	0.983	0.653	0.488	3e-75

>gi|118481907|gb|ABK92888.1| unknown [Populus trichocarpa]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 183/297 (61%), Positives = 225/297 (75%), Gaps = 12/297 (4%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M  LDLF   LMP+LKVLL+T LGL LA+DRIDLLG +  H +NNLVFY+F PAL+ S L
Sbjct: 1   MGFLDLFVAPLMPVLKVLLITGLGLFLALDRIDLLGANARHYMNNLVFYLFGPALVVSQL 60

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
            ETIT+QSL +LWFMPVNILL+F+IGS LAWILIKIT+TPPHLQGLVIGCCSAGN+GNLL
Sbjct: 61  GETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLVIGCCSAGNLGNLL 120

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
           LIIVPAVC ESNSPFGD+++CS+ G  YASLSMAVGAIYIWTYVY +M +Y +KS  D  
Sbjct: 121 LIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAVGAIYIWTYVYIIMRIYSDKSAEDTD 180

Query: 181 TNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMR 240
           TN+      IS  ES   + L  SRK     S   S +D   +     +  +   ++K+ 
Sbjct: 181 TNQP-----ISDSESYKALLL--SRKN--SGSSGCSKED---ELPLTISGEKLTVMEKIF 228

Query: 241 QRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297
           Q + KFT KI+LKM+FAP+TIAAI GF+IGT+SP R +++G+SAPLRV+D SA+L+G
Sbjct: 229 QSVKKFTAKINLKMVFAPATIAAICGFIIGTVSPIRILMIGDSAPLRVIDRSASLLG 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115416|ref|XP_002317029.1| predicted protein [Populus trichocarpa] gi|222860094|gb|EEE97641.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/297 (60%), Positives = 219/297 (73%), Gaps = 29/297 (9%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M  LDLF  ALMP+LKVLL+T LGL LA+DRIDLLG +  H +NNLVFY+F PAL+ S L
Sbjct: 1   MGFLDLFVAALMPVLKVLLITGLGLFLALDRIDLLGANARHYMNNLVFYLFGPALVVSQL 60

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
            ETIT+QSL +LWFMPVNILL+F+IGS LAWILIKIT+TPPHLQGLVIGCCSAGN+GNLL
Sbjct: 61  GETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLVIGCCSAGNLGNLL 120

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
           LIIVPAVC ESNSPFGD+++CS+ G  YASLSMAVGAIYIWTYVY +M +Y +KS  D  
Sbjct: 121 LIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAVGAIYIWTYVYIIMRIYSDKSAEDTD 180

Query: 181 TNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMR 240
           TN+      IS  ES   + L                        +R       F++K+ 
Sbjct: 181 TNQP-----ISDSESYKALLL------------------------SRKNSGSSGFMEKIF 211

Query: 241 QRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297
           Q + KFT KI+LKM+FAP+TIAAI GF+IGT+SP R +++G+SAPLRV+D SA+L+G
Sbjct: 212 QSVKKFTAKINLKMVFAPATIAAICGFIIGTVSPIRILMIGDSAPLRVIDRSASLLG 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088501|emb|CBI37492.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 174/301 (57%), Positives = 227/301 (75%), Gaps = 7/301 (2%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M  L LF VAL+PILKVLLVT +GL++A++RIDLLG +   +LN +VFYVFNPAL+ SNL
Sbjct: 1   MGFLSLFVVALVPILKVLLVTGVGLLIALERIDLLGANARRNLNAIVFYVFNPALVSSNL 60

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
           A+TIT+ SL+++WFMPVNILL+F+IGSAL W+LIKITRTP HLQGLV+GCCSAGN+GNLL
Sbjct: 61  AKTITFSSLVTMWFMPVNILLTFVIGSALGWVLIKITRTPQHLQGLVLGCCSAGNLGNLL 120

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
           LII+PA+CEE ++PFGD+  CS+ G+AYASLS+A+GAI IW+YVY +M +  NK   +  
Sbjct: 121 LIIIPAICEEEDNPFGDSD-CSTNGEAYASLSLAIGAIGIWSYVYTIMRISANKCKKEIN 179

Query: 181 TNKDSRIHIISSGESSTNIFLESSRKPLLHSSD----RRSPDDSQIQAETRSTKSRFPFL 236
            + DS I I +SGE +  I  E   + LL S D    R   D+ ++       K + PFL
Sbjct: 180 LD-DSTISIRTSGE-TLEILSEGCTEALLPSKDCPSSRECSDEVELAHAGSEGKQKVPFL 237

Query: 237 DKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALV 296
           +K++Q++    EKIDLK +FAPSTI  I+GF IG ISP RK+I+G+SAPL V++SSA  V
Sbjct: 238 EKIKQQVEILMEKIDLKKVFAPSTIGVIVGFFIGLISPIRKLIIGDSAPLHVIESSAYFV 297

Query: 297 G 297
           G
Sbjct: 298 G 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575247|ref|XP_002528527.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223532029|gb|EEF33839.1| auxin:hydrogen symporter, putative [Ricinus communis]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/279 (62%), Positives = 211/279 (75%), Gaps = 27/279 (9%)

Query: 19  LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN 78
           +VT +GL LA+DRIDLLG +  H+LNNLVFYVF+PAL+ S L ETIT+ SL+SLWFMPVN
Sbjct: 19  IVTGIGLSLALDRIDLLGPNARHNLNNLVFYVFSPALVVSQLGETITFSSLVSLWFMPVN 78

Query: 79  ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDT 138
           ILL+F+IGSALAW+LIKIT+TPPHLQGLVIGCCSAGN+GNLLLIIVPAVCEESNSPFGD+
Sbjct: 79  ILLTFIIGSALAWVLIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCEESNSPFGDS 138

Query: 139 SVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTN 198
           + CS+YG+AYASLSMAVGA+YIWTYVY++M +Y +KS     TN                
Sbjct: 139 TTCSTYGEAYASLSMAVGAVYIWTYVYFIMRIYADKSNEAVDTN---------------- 182

Query: 199 IFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKIDLKMIFAP 258
              ES R+ LL S D  +   + + A+    ++         QRI  F  K+DLKM+FAP
Sbjct: 183 ---ESFRESLLPSRDIPASSSNSLHAQLLRKRT--------FQRIKNFAGKVDLKMVFAP 231

Query: 259 STIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297
           STIAAIIGF IG++S  RK+I+G SAPLRVLDSSAAL+G
Sbjct: 232 STIAAIIGFTIGSVSAIRKLIIGTSAPLRVLDSSAALLG 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061559|ref|XP_002300540.1| predicted protein [Populus trichocarpa] gi|222847798|gb|EEE85345.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (835), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 170/297 (57%), Positives = 208/297 (70%), Gaps = 43/297 (14%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M  LDLF VA++P+LKVLL+T +GL LA+DRIDLLG +    LNNL+FYVF+PAL+ S L
Sbjct: 1   MGFLDLFVVAMVPVLKVLLITLVGLFLALDRIDLLGSTARPYLNNLIFYVFSPALVSSQL 60

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
           A TIT QSL SLWFMPVNILL+F+IGS LAWILIKITRTPPHLQGLVIGCCSAGN+GNLL
Sbjct: 61  AGTITLQSLASLWFMPVNILLTFIIGSVLAWILIKITRTPPHLQGLVIGCCSAGNLGNLL 120

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
           LIIVPAVC ESNSPFGD++VCSSYG AYASLSMAVGAIYIWTYVY +M +Y +       
Sbjct: 121 LIIVPAVCNESNSPFGDSTVCSSYGMAYASLSMAVGAIYIWTYVYIIMRIYAD------- 173

Query: 181 TNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMR 240
                     +S E++ N+ +  S +  +H S                        DK++
Sbjct: 174 ----------NSAENTKNVSIADSER--VHLS------------------------DKIK 197

Query: 241 QRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297
           Q     + K++LK +FAPST AAI GF+IG I   R  ++G SAPL V++ SA+L+G
Sbjct: 198 QCFRMISRKLNLKAVFAPSTTAAIAGFIIGVIPQIRNSLIGASAPLHVVEDSASLIG 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476971|ref|XP_002263557.2| PREDICTED: uncharacterized protein LOC100249991 [Vitis vinifera]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/297 (55%), Positives = 214/297 (72%), Gaps = 28/297 (9%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M  L LF VAL+PILKVLLVT +GL++A++RIDLLG +   +LN +VFYVFNPAL+ SNL
Sbjct: 1   MGFLSLFVVALVPILKVLLVTGVGLLIALERIDLLGANARRNLNAIVFYVFNPALVSSNL 60

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
           A+TIT+ SL+++WFMPVNILL+F+IGSAL W+LIKITRTP HLQGLV+GCCSAGN+GNLL
Sbjct: 61  AKTITFSSLVTMWFMPVNILLTFVIGSALGWVLIKITRTPQHLQGLVLGCCSAGNLGNLL 120

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
           LII+PA+CEE ++PFGD+  CS+ G+AYASLS+A+GAI IW+YVY +M +  NK   +  
Sbjct: 121 LIIIPAICEEEDNPFGDSD-CSTNGEAYASLSLAIGAIGIWSYVYTIMRISANKCKKE-- 177

Query: 181 TNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMR 240
                    I+  +S+    L S   P    S R   D+ Q+  +            K++
Sbjct: 178 ---------INLDDSTIKALLPSKDCP----SSRECSDEVQVLRK------------KIK 212

Query: 241 QRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297
           Q++    EKIDLK +FAPSTI  I+GF IG ISP RK+I+G+SAPL V++SSA  VG
Sbjct: 213 QQVEILMEKIDLKKVFAPSTIGVIVGFFIGLISPIRKLIIGDSAPLHVIESSAYFVG 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431659|ref|XP_002264606.1| PREDICTED: uncharacterized transporter C5D6.04 isoform 1 [Vitis vinifera] gi|359476983|ref|XP_003631924.1| PREDICTED: uncharacterized transporter C5D6.04 isoform 2 [Vitis vinifera]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/312 (51%), Positives = 212/312 (67%), Gaps = 29/312 (9%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M    LF  ALMPILKVL+VT +GL +A++RIDLLG +  H LN LVFY+F PAL+ SNL
Sbjct: 1   MGFWSLFVTALMPILKVLVVTGIGLFIALERIDLLGPTARHHLNTLVFYIFYPALVASNL 60

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
           A+T+T  SL ++WFMPVNILL+F+IGSAL WILIKITR P HL  L++GCCSAGNMGNL 
Sbjct: 61  ADTVTASSLATMWFMPVNILLTFIIGSALGWILIKITRPPQHLHALILGCCSAGNMGNLF 120

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
            II+PA+CEES++PFG +S CS+ G AYASLS A+GAI +WTYVY +M +        + 
Sbjct: 121 FIIIPAICEESDNPFG-SSDCSTDGDAYASLSSALGAIGVWTYVYMIMRM--------SA 171

Query: 181 TNKDSRIHIISSGESSTNIFLESSRKPLLHSSD---------RRSP------DDSQIQAE 225
           T     I++ +S  S     + +SR+ L  SSD         R SP      D+ ++  +
Sbjct: 172 TKCKGEINLCNSTTS-----VRTSREALEISSDCCTEALLPPRDSPRSGNWSDEEELPHD 226

Query: 226 TRSTKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAP 285
               KS  PF +K++Q++  F EK + K +F PSTI  I GF IG I P RK+I+G+SAP
Sbjct: 227 GSEEKSEVPFSEKIKQKVKIFMEKTNFKQVFTPSTIGVIFGFFIGLIPPIRKLIIGDSAP 286

Query: 286 LRVLDSSAALVG 297
           LRV++SSA L+G
Sbjct: 287 LRVIESSATLLG 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571127|ref|XP_002526514.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223534189|gb|EEF35905.1| auxin:hydrogen symporter, putative [Ricinus communis]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/297 (56%), Positives = 217/297 (73%), Gaps = 15/297 (5%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M   DLF VALMP+LKVLLVTA+GL LA D I LLG S  + LNNLVFYVF+PALIGS+L
Sbjct: 33  MGFWDLFVVALMPVLKVLLVTAIGLFLATDGIHLLGASARNHLNNLVFYVFSPALIGSSL 92

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
           A T+T  SL++LWFMPVNILL+F+IGSAL W L+KIT TP HL G +I CCSAGN+GNLL
Sbjct: 93  ANTVTLDSLVTLWFMPVNILLTFIIGSALGWALVKITHTPKHLHGTIISCCSAGNLGNLL 152

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
           LII+PA+CEE+NSPFGD++ CS+YG+AYASLSMAV AIYIW+YVYY+M    +    +  
Sbjct: 153 LIILPALCEENNSPFGDSTACSAYGQAYASLSMAVLAIYIWSYVYYIMRASASDESKEIN 212

Query: 181 TNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMR 240
            N ++ I I   GE+S   + E+     L S D   P    + AE + +      L ++R
Sbjct: 213 GN-NTTIIISPCGETSD--YTEA-----LLSEDV--PTTENLPAELQES-----ILQRIR 257

Query: 241 QRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297
           Q I++   K++++M+ APSTIAA+ GF IG ISP RK+++G+SAPLRV+ SSA L+G
Sbjct: 258 QCISRIAGKMNVRMVLAPSTIAAMAGFAIGIISPIRKIMIGDSAPLRVIYSSANLLG 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517519|ref|XP_003629048.1| Transporter, putative [Medicago truncatula] gi|355523070|gb|AET03524.1| Transporter, putative [Medicago truncatula]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/298 (47%), Positives = 208/298 (69%), Gaps = 17/298 (5%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M  + L  VA +P++KVLL++ALGL LAID++D+LG      +NNLVFYVFNP+L+GSNL
Sbjct: 1   MGFMQLLYVASLPVMKVLLISALGLFLAIDQVDVLGADARKRVNNLVFYVFNPSLVGSNL 60

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
           AET+T  ++++LWFMPVN+L +F++GSALAWI+IKITR P HL+GL++GCCSAGN+GNL 
Sbjct: 61  AETLTSDNVLTLWFMPVNVLATFILGSALAWIVIKITRPPKHLEGLILGCCSAGNLGNLP 120

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKS-VSDA 179
           +II+PA+C+E  SPFGD  +C  YG AY SLSMA+GA+ +WTYVY +M +  +++ +  +
Sbjct: 121 IIIIPAICKEKGSPFGDPVLCHKYGMAYVSLSMAIGAVLLWTYVYNIMRISTSRAKLMTS 180

Query: 180 GTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKM 239
           G   +S+ + IS   +     L+ +   LL ++D                + +  F DK+
Sbjct: 181 GVISESQQYNISVTNNPAKDALDDAYTLLLPNTDF---------------EEKVSFSDKV 225

Query: 240 RQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG 297
           +  +   +  I+ K IFAPSTI  IIGF IG I+P RK++VG +APL V++ SA+++G
Sbjct: 226 KCHLRNISNNINFKTIFAPSTI-GIIGFCIGVINPIRKLMVGNNAPLHVVEDSASMLG 282

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575251|ref|XP_002528529.1| auxin:hydrogen symporter, putative [Ricinus communis] gi|223532031|gb|EEF33841.1| auxin:hydrogen symporter, putative [Ricinus communis]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/303 (48%), Positives = 205/303 (67%), Gaps = 11/303 (3%)

Query: 1   MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
           M +LD+F  +++P++KVLL+TA+G  LAID +D+LG      LNN+VF+VFNPAL+GSN+
Sbjct: 1   MGLLDIFIASVIPVVKVLLITAVGSFLAIDYVDILGVDARKHLNNIVFFVFNPALVGSNI 60

Query: 61  AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
           A+ IT +S+  LWFMP+NIL++F+IGS L W+LIK T+ P  L GLV+GCCSAGN+GNL 
Sbjct: 61  AKYITLRSMGVLWFMPLNILITFIIGSMLGWLLIKSTKAPHELWGLVLGCCSAGNLGNLP 120

Query: 121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
           +II+P VC+E  SPFGD  VC ++G AYASLSMA+G+IY+W+YVY ++ LY NK   D G
Sbjct: 121 MIIIPTVCKERGSPFGDVDVCYTHGLAYASLSMAIGSIYMWSYVYNIVRLYSNK---DCG 177

Query: 181 TNKDSRI--HIISSGESSTNIFLESSRKPLL----HSSDRRSPDDSQIQAETRSTKSRFP 234
             K   I     SSGE+  N+       PLL     S D    D  +++      K    
Sbjct: 178 GTKLDAITKGAKSSGETPKNLS-RCCTGPLLPLENSSRDEEHMDCFELECTLSKEKEEVS 236

Query: 235 FLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAA 294
            LD+++Q +   TE   LK +FAPST  A+IGF+IGT    R+ ++G++APL V+  SA+
Sbjct: 237 ILDRIKQGLQMVTE-FKLKRLFAPSTTGAVIGFIIGTTPQLREALIGDNAPLHVIPDSAS 295

Query: 295 LVG 297
           L+G
Sbjct: 296 LLG 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2011731	390	AT1G76520 "AT1G76520" [Arabido	0.666	0.507	0.495	1.2e-69
TAIR|locus:2011746	415	AT1G76530 "AT1G76530" [Arabido	0.942	0.674	0.397	1.6e-56
TAIR|locus:2156847	395	AT5G65980 "AT5G65980" [Arabido	0.565	0.425	0.488	1.6e-53
TAIR|locus:2053908	396	AT2G17500 [Arabidopsis thalian	0.919	0.689	0.362	8.4e-42
TAIR|locus:2026366	457	AT1G71090 "AT1G71090" [Arabido	0.548	0.356	0.337	1.1e-30
TAIR|locus:2185123	431	AT5G01990 "AT5G01990" [Arabido	0.962	0.663	0.286	2.7e-29

TAIR|locus:2011731 AT1G76520 "AT1G76520" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 100/202 (49%), Positives = 140/202 (69%)

Query:     1 MEILDLFEVALMPIXXXXXXXXXXXXXAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
             +++L+LF  +  P+             A+D ++LLGH     LNN+VFYVF+P+LIGS L
Sbjct:     2 VKLLELFITSSKPVVEILLITSVGFYMALDGVNLLGHDARKYLNNIVFYVFSPSLIGSRL 61

Query:    61 AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
             A+++TY+SL+ +WFMPVN+LL+F+IGS L WI+I IT+ P HL+GL++GCC+AGN+GN+ 
Sbjct:    62 ADSVTYESLVKMWFMPVNVLLTFIIGSLLGWIVIVITKPPSHLRGLILGCCAAGNLGNMP 121

Query:   121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVS--- 177
             LII+PAVC+E   PFGD   C  YG  Y +LSMA+G+IYIWTYVY +M +  N  V    
Sbjct:   122 LIIIPAVCKEKGGPFGDPESCQKYGMGYVALSMAMGSIYIWTYVYNLMRVLSNSPVETPP 181

Query:   178 DAGTNKDS-RIHIISSGESSTN 198
                +N DS ++ +ISS E   N
Sbjct:   182 SVESNYDSYKVPLISSKEEENN 203

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015824 "proline transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2011746 AT1G76530 "AT1G76530" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 122/307 (39%), Positives = 188/307 (61%)

Query:     1 MEILDLFEVALMPIXXXXXXXXXXXXXAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
             M++L+LF  +  P+             A+D ++LLGH     LNN+VFYVF+P+LIGS L
Sbjct:     1 MKLLELFIASSKPVVETLLITSVGFYLALDTVNLLGHDARKHLNNIVFYVFSPSLIGSRL 60

Query:    61 AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
             A+++TY+SL+ +WFMPVN+LL+F+IGS L WI+I IT+ P  L+GL+I CC++GN+G + 
Sbjct:    61 ADSVTYESLVKMWFMPVNVLLTFMIGSLLGWIVIVITKPPSQLRGLIISCCASGNLGTMP 120

Query:   121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYV--YYV-------MSLY 171
             LII+PA+C+E   PFGD+  C  YG  Y +LSM    I ++ +   +YV       M LY
Sbjct:   121 LIIIPAICKEKGGPFGDSESCEKYGMGYVTLSMTAFFISVYKHDTNWYVSGGNGLLMDLY 180

Query:   172 LNKSVSDAGTNKDSRIHIISSG-ESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTK 230
             +N     + +  ++  H I S  + S  + L SS++      + +  D+ Q+        
Sbjct:   181 INLMRVLSNSPVETHTHSIESNYDDSCKVQLISSKE------EEKEEDNHQV-------- 226

Query:   231 SRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLD 290
              R+   ++++QR+   ++K++L  IFAP+TIAAII  VIG I+P R +I+G  AP RV+ 
Sbjct:   227 GRW---EEVKQRVVSLSKKVNLGSIFAPATIAAIIALVIGLITPLRNLIIGTVAPFRVIQ 283

Query:   291 SSAALVG 297
              S  L+G
Sbjct:   284 DSLTLLG 290

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2156847 AT5G65980 "AT5G65980" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 82/168 (48%), Positives = 110/168 (65%)

Query:     1 MEILDLFEVALMPIXXXXXXXXXXXXXAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
             M  L+L EVA MPI             A D   LL      S+N LVF VF P ++ +NL
Sbjct:     1 MGFLELLEVASMPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANL 60

Query:    61 AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
             AET+T Q +IS WFMP+N+ ++FL+G  L W+++K+    P L GL+I  C++GNMGNL+
Sbjct:    61 AETVTLQDIISWWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLM 120

Query:   121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168
             LI+VPA+C+E  SPFG+ SVC S G +YAS SMA+G  YIWTY Y ++
Sbjct:   121 LILVPAICDEEGSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLV 168

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2053908 AT2G17500 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 104/287 (36%), Positives = 158/287 (55%)

Query:     1 MEILDLFEVALMPIXXXXXXXXXXXXXAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNL 60
             M    L EVA MP+             A DR  L      +S+N +VF +F PAL+ +NL
Sbjct:     1 MGFWSLLEVASMPVIQVLFMSLVGAFMASDRCKLFPVEARNSMNKVVFVLFAPALMFANL 60

Query:    61 AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLL 120
             A+T+T + +IS WFMPVN+ L+FLIG  L W+++KI + PP+L+GL++  CSAGNMGNL 
Sbjct:    61 AQTVTLEDIISWWFMPVNMGLTFLIGGLLGWLVVKILKPPPYLEGLIVATCSAGNMGNLP 120

Query:   121 LIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAG 180
             +I+VPA+C+E  SPFG+ SVC + G +YAS SMA+G  YIWTY + ++      ++    
Sbjct:   121 IILVPAICDEDKSPFGNRSVCRTVGLSYASFSMALGGFYIWTYTFRLIK---GSAMKVQA 177

Query:   181 TNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDK-M 239
               +  +I I SS     N  LE+  K  L  +     ++  ++ +T   +    FL + +
Sbjct:   178 IEESEKIAIKSS-----NSDLEADHKTHLLGAPE-DKENKVVKEKTGFWRKGVDFLHEIL 231

Query:   240 RQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPL 286
              + +   T    +  IF    +  +   +IG  +P R  IV  +A L
Sbjct:   232 EELLAPPTLGAIIGFIFG--AVRWLRNLIIGDDAPLR--IVQSTAKL 274

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2026366 AT1G71090 "AT1G71090" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
 Identities = 56/166 (33%), Positives = 91/166 (54%)

Query:     3 ILDLFEVALMPIXXXXXXXXXXXXXAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAE 62
             ++D+    ++P+             A  +  L+  +    L+ LVF +F P LI + L E
Sbjct:    13 VVDILS-GVVPLLKLICLTVIGLLLAHPKTQLVPRATFRLLSKLVFALFLPCLIFTELGE 71

Query:    63 TITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLI 122
             +IT  +++  WF+PVN+LLS ++GS + ++++ I R PP      I   + GN GNLLL 
Sbjct:    72 SITLDNIVQWWFIPVNVLLSAVVGSLIGYLVVLICRPPPEFNRFTIVMTAFGNTGNLLLA 131

Query:   123 IVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168
             IV +VC    +PFG    C+S G +Y S +  V  I ++T VY++M
Sbjct:   132 IVSSVCHTKTNPFGPN--CNSRGVSYVSFAQWVAVILVYTVVYHMM 175

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2185123 AT5G01990 "AT5G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 85/297 (28%), Positives = 145/297 (48%)

Query:     3 ILDLFEVALMPIXXXXXXXXXXXXXAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAE 62
             +L   ++A+MPI             A   +++L  S    LN LVF +  P LI S L +
Sbjct:    24 VLGTIKIAVMPIAKVFTMCFLGLLMASKYVNILPPSGRKLLNGLVFSLLLPCLIFSQLGQ 83

Query:    63 TITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTP-PHLQGLVIGCCSAGNMGNLLL 121
              +T Q ++  WF+PVN++L  + GS + +I+  I R P P+ +  +I     GN+GN+ L
Sbjct:    84 AVTLQKMLQWWFIPVNVVLGTISGSIIGFIVASIVRPPYPYFKFTIIQI-GVGNIGNVPL 142

Query:   122 IIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGT 181
             +++ A+C ++++PFGD+  CS  G AY S    VGAI ++TYVY + +    +       
Sbjct:   143 VLLAALCRDTSNPFGDSEKCSIDGTAYISFGQWVGAIILYTYVYQMFAPP-PEGFDAEEE 201

Query:   182 NKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQ 241
             N   +   + +      +  ++  K    + D      ++ +    S K       K+ Q
Sbjct:   202 NLALKTLPVDAAPEQVPLLTQNFPKDFSPTQDLLPVQSTEPRGRGVSRKG------KIAQ 255

Query:   242 RINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPF-RKVIVGESAPLRVLDSSAALVG 297
                   EK+ LK I  P+ +A+I+  ++G I PF +K+I    APL     S  ++G
Sbjct:   256 IFVFLYEKLKLKQIVQPAIVASILAMILGAI-PFTKKLIFTNGAPLFFFTDSCMILG 311


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      297       284   0.00085  115 3  11 22  0.46    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  181 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.51u 0.15s 24.66t   Elapsed:  00:00:01
  Total cpu time:  24.51u 0.15s 24.66t   Elapsed:  00:00:01
  Start:  Thu May  9 22:31:19 2013   End:  Thu May  9 22:31:20 2013

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	2e-27
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	1e-09

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  108 bits (271), Expect = 2e-27
 Identities = 59/274 (21%), Positives = 105/274 (38%), Gaps = 69/274 (25%)

Query: 9   VALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQS 68
             +  +L V L+  LG +     I  L       +N LV Y   P LI S+++  +T + 
Sbjct: 1   TVVEAVLPVFLIMLLGYLAGKSGI--LPPDQASGINKLVVYFALPLLIFSSISTNVTLEM 58

Query: 69  LISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVC 128
           ++  W +PV ++L   I   + +++ KI + P   +G++I   +  N G L L ++ A+ 
Sbjct: 59  IVDFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALY 118

Query: 129 EESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIH 188
            E              G +YA +S+ +G I IWT  Y+++        S       S   
Sbjct: 119 GE-------------EGLSYAIISVVLGVIIIWTLGYFLIE-------SRGAKRDKSEE- 157

Query: 189 IISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTE 248
              SG++S ++ L      LL                                       
Sbjct: 158 ---SGDTSGSMTLLILIVVLL--------------------------------------- 175

Query: 249 KIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGE 282
               K+I  P T A+++G ++G +     +I  E
Sbjct: 176 ----KLILNPPTYASLLGLILGLVGFLLPLIFPE 205

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 33/170 (19%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 6   LFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETIT 65
           +  +    +L + L+  LG +L   R  +L       L+ LV YV  PAL+ +++A    
Sbjct: 1   MMMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADL 58

Query: 66  YQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVP 125
              L  L  +  +++ + L    LA I   + +       +     +  N+G L L +  
Sbjct: 59  -SGLADLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVAL 117

Query: 126 AVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKS 175
           ++       FG+  +      AYA + + +G   ++T    +++     +
Sbjct: 118 SL-------FGEKGL------AYAVIFLIIGLFLMFTLGVILLARSGGGT 154

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
KOG2722	408	consensus Predicted membrane protein [Function unk	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	100.0
COG0679	311	Predicted permeases [General function prediction o	99.86
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.85
PRK09903	314	putative transporter YfdV; Provisional	99.81
TIGR00841	286	bass bile acid transporter. Functionally character	96.55
COG0385	319	Predicted Na+-dependent transporter [General funct	94.2
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	92.27
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	92.06
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	89.95
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	89.7
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	88.67

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=5.4e-66  Score=479.28  Aligned_cols=283  Identities=44%  Similarity=0.759  Sum_probs=239.9

Q ss_pred             CcHHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH
Q 022430            1 MEILDLFEVAL--MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN   78 (297)
Q Consensus         1 m~~~~~~~~a~--~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~   78 (297)
                      ||+++.+-.|.  +|+++|++++.+|+++|+++.|++++++||.+|++||++|+|||||+++++++|.+++.+||+||++
T Consensus         2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn   81 (408)
T KOG2722|consen    2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN   81 (408)
T ss_pred             chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence            78999988888  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhH
Q 022430           79 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI  158 (297)
Q Consensus        79 ~~~~~~i~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i  158 (297)
                      .++++++|.++||+++|++|+|++.||++++||+|||+|+||+.+++|+|++++.|||++|.|.+||++|++++++++++
T Consensus        82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i  161 (408)
T KOG2722|consen   82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI  161 (408)
T ss_pred             HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccc-cccCCCCCCccccccCCCCCcccccccCCcCcCCCCCCCCCCCcchhhhhhhccCCCCchhh
Q 022430          159 YIWTYVYYVMSLYLNKS-VSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLD  237 (297)
Q Consensus       159 ~~wt~G~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (297)
                      ++|||+|+++.++..+. ...++.+-|.  ..+.....+.+++++++++|+++.+.+++  .++          ....|.
T Consensus       162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~--~~~~~~~~s~e~~~~~~~k~~ll~~~en~--~~~----------~~g~~~  227 (408)
T KOG2722|consen  162 LRWTYVYRMLLPPNLELMSALKESPVEA--LLESVPQPSVESDEDSTCKTLLLASKENR--NNQ----------VVGREG  227 (408)
T ss_pred             EEEEEEeeeecCCchhhhhcCChhhhhh--hhhccCCCCcccccccccccccccccccC--CCc----------eeeccc
Confidence            99999999887764322 1112101110  00000011123344556777776555441  111          112455


Q ss_pred             HHHHHHHHHhhhhhhhhccChhHHHHHHHHHhhcccccccccccCCCCchhhhhhhhhcC
Q 022430          238 KMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG  297 (297)
Q Consensus       238 k~~~~~~~~~~~~~l~~~~~Pp~iaai~g~ivG~vP~Lr~~~f~~~apL~~i~dS~~~lG  297 (297)
                      |.+++.+...++.+++++++|||+|+++|+++|.||||||++|++|||||++|||++++|
T Consensus       228 ~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG  287 (408)
T KOG2722|consen  228 KVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLG  287 (408)
T ss_pred             cceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhc
Confidence            566666667777789999999999999999999999999999999999999999999998

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=100.00  E-value=7.5e-35  Score=279.28  Aligned_cols=268  Identities=28%  Similarity=0.454  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHH
Q 022430            9 VALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSA   88 (297)
Q Consensus         9 ~a~~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~   88 (297)
                      +++++++++++++++||+++  |+|+++++..+.+|++|+++++|||+|++++++.+.+++.++|+++++.++.++++++
T Consensus         1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (385)
T PF03547_consen    1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL   78 (385)
T ss_pred             CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence            36789999999999999999  9999999999999999999999999999999998999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHH
Q 022430           89 LAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM  168 (297)
Q Consensus        89 lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll  168 (297)
                      +++++.|++|.|+++++.+..+|+|+|++++|+|++.++       ||+      +|++|+++|.+++++++|++|+.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~  145 (385)
T PF03547_consen   79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLL  145 (385)
T ss_pred             HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999998       565      8999999999999999999999999


Q ss_pred             hhccccccccCCCCCCccc--cccCCCCCcc-------ccccc-CCcCcCCCC-CCCCCCCcchhhhhhhccCCCCchhh
Q 022430          169 SLYLNKSVSDAGTNKDSRI--HIISSGESST-------NIFLE-SSRKPLLHS-SDRRSPDDSQIQAETRSTKSRFPFLD  237 (297)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~-~~~~t~~lp-~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (297)
                      +.++++.+..++.+.+.++  +.+.++++..       ..+++ .+++++... +..+++..+.. +...+.+.....+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  224 (385)
T PF03547_consen  146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSV-STSPSPSNSTGAEQ  224 (385)
T ss_pred             cccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhh-ccCCcccccchhhh
Confidence            8765443221110100000  0000000000       00000 001111110 00000000000 00000111123333


Q ss_pred             HHHHHHHHHhhhhhhhhccChhHHHHHHHHHhhcccccccccccCCCCchhhhhhhhhcC
Q 022430          238 KMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVG  297 (297)
Q Consensus       238 k~~~~~~~~~~~~~l~~~~~Pp~iaai~g~ivG~vP~Lr~~~f~~~apL~~i~dS~~~lG  297 (297)
                      +..++.+....+.-.+.++|||++|+++|+++|++|+++++++.     .|++++++.||
T Consensus       225 ~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg  279 (385)
T PF03547_consen  225 KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLG  279 (385)
T ss_pred             hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHH
Confidence            44333344333333688999999999999999999999999998     69999999886

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>COG0679 Predicted permeases [General function prediction only]

Probab=99.86  E-value=8.1e-21  Score=178.62  Aligned_cols=149  Identities=23%  Similarity=0.331  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHH
Q 022430            7 FEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIG   86 (297)
Q Consensus         7 ~~~a~~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~   86 (297)
                      +...+.+++++++++++||+++  |.|.++++..+.+|++|+|+++|||+|.+++++ +.+...++..+.+..+.+.+..
T Consensus         2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~-~~~~~~~~~~~~~~~~~~~~~~   78 (311)
T COG0679           2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATA-DLSGLADLGLIVASLVATLLAF   78 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhC-CcchhhhHHHHHHHHHHHHHHH
Confidence            4567889999999999999999  999999999999999999999999999999999 5655566666666666666666


Q ss_pred             HHHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHH
Q 022430           87 SALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYY  166 (297)
Q Consensus        87 ~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~  166 (297)
                      .+...+..|..+.++++++.+..+.+|+|++++|+|+..++       ||+      +|++|..+|+.+.++..|++|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~~  145 (311)
T COG0679          79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGVI  145 (311)
T ss_pred             HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666788888888889999999999999999998885       898      89999999999999999999999


Q ss_pred             HHhhc
Q 022430          167 VMSLY  171 (297)
Q Consensus       167 ll~~~  171 (297)
                      .+.+.
T Consensus       146 ~l~~~  150 (311)
T COG0679         146 LLARS  150 (311)
T ss_pred             HHHHh
Confidence            88765

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.85  E-value=1.2e-20  Score=177.82  Aligned_cols=148  Identities=18%  Similarity=0.191  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcc-hhhhhhHHHHHHHHHH
Q 022430            6 LFEVALMPILKVLLVTALGLVL-AIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQ-SLISLWFMPVNILLSF   83 (297)
Q Consensus         6 ~~~~a~~~vl~vlli~~~G~~l-a~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~-~l~~~~~i~v~~~~~~   83 (297)
                      .++..++.++++++++++||++ .  |+|+++++..+.+|++++|+++||++|+++++. +.+ .....+...+.....+
T Consensus         2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~-~~~~~~~~~~~~~~~~~~~~   78 (321)
T TIGR00946         2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTT-LADILQKSQSPVVLFLWGAF   78 (321)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999 8  999999999999999999999999999999986 443 3344445555555667


Q ss_pred             HHHHHHHHHHHH-HhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccch---hhHHHHHHHhhhHH
Q 022430           84 LIGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYG---KAYASLSMAVGAIY  159 (297)
Q Consensus        84 ~i~~~lg~l~~~-i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g---~~Y~~~~~~~~~i~  159 (297)
                      +..++++|.+.| .+|.+++.++.+..+++++|++++++|++.++       ||+      +|   ..|+..+...+++.
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~~~~  145 (321)
T TIGR00946        79 SGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGAVLM  145 (321)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhccchh
Confidence            788899999998 88889899999999999999999999999997       886      45   88999999999999


Q ss_pred             HHHHHHHHHh
Q 022430          160 IWTYVYYVMS  169 (297)
Q Consensus       160 ~wt~G~~ll~  169 (297)
                      .|++|+.+..
T Consensus       146 ~~~~~~~~~~  155 (321)
T TIGR00946       146 TIALGLFLVS  155 (321)
T ss_pred             HHHHHHHHhc
Confidence            9999986654

>PRK09903 putative transporter YfdV; Provisional

Probab=99.81  E-value=7.8e-19  Score=165.17  Aligned_cols=147  Identities=13%  Similarity=0.193  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHH
Q 022430           11 LMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALA   90 (297)
Q Consensus        11 ~~~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~lg   90 (297)
                      ++.++++++++++||+++  |+|+++++..+.+|++++|+++||++|.++.+. +.+++.+-+...+...+.++++++++
T Consensus         6 ~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (314)
T PRK09903          6 IGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFS   82 (314)
T ss_pred             HHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            456799999999999999  999999999999999999999999999999886 77766534555677777788888888


Q ss_pred             HHHHH-HhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHHh
Q 022430           91 WILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS  169 (297)
Q Consensus        91 ~l~~~-i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll~  169 (297)
                      |++.| ..|.+++.++.....++++|++++++|+++++       ||++..   .|+.|..++. +.+++.|++|..+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~~-~~~~~~~~~g~~~~~  151 (314)
T PRK09903         83 WFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIISI-IVNAITIPIGLYLLN  151 (314)
T ss_pred             HHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHHH-HHHHHHHHHHHHHHc
Confidence            88875 56777677777888899999999999999996       886200   1565666544 578899999998886


Q ss_pred             hc
Q 022430          170 LY  171 (297)
Q Consensus       170 ~~  171 (297)
                      .+
T Consensus       152 ~~  153 (314)
T PRK09903        152 PS  153 (314)
T ss_pred             cc
Confidence            43

>TIGR00841 bass bile acid transporter

Probab=96.55  E-value=0.068  Score=49.87  Aligned_cols=136  Identities=12%  Similarity=0.115  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhh-hhHHHHHHHHHHHHHHHHHHH
Q 022430           14 ILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWI   92 (297)
Q Consensus        14 vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~-~~~i~v~~~~~~~i~~~lg~l   92 (297)
                      ...+++=..+|..+++.. +-+.+...+ ++++.. +++=++++.-++.+  .+.+.+ .|.+.+..++..++++.+||+
T Consensus       140 ~~~v~vPl~lG~~~r~~~-p~~~~~~~~-~~~~s~-~~l~liv~~~~~~~--~~~i~~~~~~~~~~~~ll~~~~~~~g~~  214 (286)
T TIGR00841       140 LVAVLIPVSIGMLVKHKL-PQIAKIILK-VGLISV-FLLSVIIAVVGGIN--VENLATIGPLLLLVGILLPLAGFLLGYL  214 (286)
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHh-CchHHH-HHHHHHHHHHHHhh--HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            566677778888877311 111111112 333322 22223444444433  233332 344445556777899999999


Q ss_pred             HHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHH
Q 022430           93 LIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYV  164 (297)
Q Consensus        93 ~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G  164 (297)
                      ++|.+|.+++++......++..|++ +.+.+..+.       |+.  +...-+..|...++..+.++.+-+.
T Consensus       215 ~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~--~~a~~~~~~~v~~~~~~~~~a~~~~  276 (286)
T TIGR00841       215 LAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP--EVAVPSAIFPLIYALFQLAFALLFL  276 (286)
T ss_pred             HHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888889999988 777765553       542  1222355666677777776665443

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=94.20  E-value=2  Score=40.81  Aligned_cols=137  Identities=16%  Similarity=0.034  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhHHh--hhhHHHHHHHhhHHHHHHhhccCCcchhhhhh-HHHHHHHHHHHHHHHHHH
Q 022430           15 LKVLLVTALGLVLAIDRIDLLGHSVTH--SLNNLVFYVFNPALIGSNLAETITYQSLISLW-FMPVNILLSFLIGSALAW   91 (297)
Q Consensus        15 l~vlli~~~G~~la~~~~~~l~~~~~~--~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~-~i~v~~~~~~~i~~~lg~   91 (297)
                      ..+++=..+|-++.  +  ++++-..+  ..=..+-...+=+.++...+.+  .+++.... .+.+..++...+++.+||
T Consensus       168 ~~vllP~~LG~~~r--~--~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~--~~~~~~~~~~v~~~v~~~n~lg~~~gy  241 (319)
T COG0385         168 LQVLLPFVLGQLLR--P--LLPKWVERLKKALPPVSVLSILLIVYAAFSAA--VENGIWSGLLIFVAVILHNLLGLLLGY  241 (319)
T ss_pred             HHHHHHHHHHHHHH--H--HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566777665  2  12222211  2222233344445566666554  34444333 444455778899999999


Q ss_pred             HHHHHhcCCCcccceeeeecccCCcc-hhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHHHhh
Q 022430           92 ILIKITRTPPHLQGLVIGCCSAGNMG-NLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSL  170 (297)
Q Consensus        92 l~~~i~~~p~~~rg~~i~~~~f~Nt~-~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~ll~~  170 (297)
                      ..+|.++.|+..+..+..|++-.|.+ ..|++-  +        |.+.    ....--..+|....++..=.++.++=++
T Consensus       242 ~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~--~--------f~~~----~~~alP~aif~~~q~~~~a~la~~~~~~  307 (319)
T COG0385         242 FGARLLGFDKADEITIAIEGGMQNLGLGAALAA--A--------FFGN----PLMALPLAIFSVWQNMSGAVLAGLYARR  307 (319)
T ss_pred             HHHHHhCCChhheeeEEEeeccccHHHHHHHHH--h--------cCCC----chhHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988876 355553  1        2220    1334444556666666655566555554


Q ss_pred             c
Q 022430          171 Y  171 (297)
Q Consensus       171 ~  171 (297)
                      .
T Consensus       308 ~  308 (319)
T COG0385         308 I  308 (319)
T ss_pred             c
Confidence            3

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=92.27  E-value=2.6  Score=39.94  Aligned_cols=130  Identities=16%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHhhccCCCChhH--HhhhhHHHHHHHhhHHHHHHhhccCCcch---h--hhhhHHHHHHHHHHHHHH
Q 022430           15 LKVLLVTALGLVLAIDRIDLLGHSV--THSLNNLVFYVFNPALIGSNLAETITYQS---L--ISLWFMPVNILLSFLIGS   87 (297)
Q Consensus        15 l~vlli~~~G~~la~~~~~~l~~~~--~~~ls~lv~~vflP~Lif~~l~~~~t~~~---l--~~~~~i~v~~~~~~~i~~   87 (297)
                      +.+++=..+|-+++  +.  +++..  .|..-+.+-...+-.+++++...++..+-   +  ..+..+.+..+....+.+
T Consensus       165 ~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  240 (313)
T PF13593_consen  165 LTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL  240 (313)
T ss_pred             HHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence            45555566687666  21  22221  12334444556666777777766633222   2  223333344456667778


Q ss_pred             HHHHHHHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhh
Q 022430           88 ALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGA  157 (297)
Q Consensus        88 ~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~  157 (297)
                      .++|..+|.++.+++.+-.+.. |+-..+..+++++...+       |++.+ .......-+.+|....-
T Consensus       241 ~~~~~~~r~~~~~~~d~iA~~F-~gs~Ksl~~gvpl~~~l-------f~~~~-~~~~~~lP~~iyh~~Ql  301 (313)
T PF13593_consen  241 VLGWLAARLLGFSRPDRIAVLF-CGSQKSLALGVPLASIL-------FPGHP-DLGLIVLPLMIYHPLQL  301 (313)
T ss_pred             HHHHHHHhhcCCChhhEEEEEE-EcCcCcchhHHHHHHHH-------ccccc-ccchhhhHHHHHHHHHH
Confidence            8999999999999988765555 45588888888888776       55321 22234445555555443

>TIGR00832 acr3 arsenical-resistance protein

Probab=92.06  E-value=1  Score=42.93  Aligned_cols=105  Identities=12%  Similarity=0.090  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHhhcc-----CCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhh----hHHHHHHHHHHHH
Q 022430           15 LKVLLVTALGLVLAIDRI-----DLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL----WFMPVNILLSFLI   85 (297)
Q Consensus        15 l~vlli~~~G~~la~~~~-----~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~----~~i~v~~~~~~~i   85 (297)
                      ..+++=..+|..+++...     ++..++..+.++.+.. +++=..++...+.+  .+.+.+.    +.+....++...+
T Consensus       182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~--~~~i~~~~~~i~~~~~~v~l~~~~  258 (328)
T TIGR00832       182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQ--GETIIELPLDIALIAIPLLIYFYI  258 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHH
Confidence            344455566776663222     2222233444555444 33334555555554  3434433    2333344677889


Q ss_pred             HHHHHHHHHHHhcCCCcccceeeeecccCCcc-hhHHH
Q 022430           86 GSALAWILIKITRTPPHLQGLVIGCCSAGNMG-NLLLI  122 (297)
Q Consensus        86 ~~~lg~l~~~i~~~p~~~rg~~i~~~~f~Nt~-~Lpl~  122 (297)
                      ++.+||+++|.+|.+++++..+..+++..|.+ .++++
T Consensus       259 ~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA  296 (328)
T TIGR00832       259 MFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVA  296 (328)
T ss_pred             HHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHH
Confidence            99999999999999999998888888888865 34444

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=89.95  E-value=4.5  Score=39.40  Aligned_cols=135  Identities=17%  Similarity=0.130  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCh-hHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 022430           14 ILKVLLVTALGLVLAIDRIDLLGH-SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWI   92 (297)
Q Consensus        14 vl~vlli~~~G~~la~~~~~~l~~-~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~~~~~~~i~~~lg~l   92 (297)
                      ...++.+..+|...+  ...+... .....+..+..++|     |..++...++.++.+-..+.++.++...+-.++-++
T Consensus       240 ~~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~  312 (378)
T PF05684_consen  240 TWLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI  312 (378)
T ss_pred             HHHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            345666677777666  3333333 55666777766665     577888889999999444555556666777777888


Q ss_pred             HHHHhcCCCcccceeeeecccCCcchhHHHHHHhhhhcCCCCCCCccccccchhhHHHHHHHhhhHHHHHHHHHH
Q 022430           93 LIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYV  167 (297)
Q Consensus        93 ~~~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al~~~~~~~Fg~~~~~~~~g~~Y~~~~~~~~~i~~wt~G~~l  167 (297)
                      ++|++|.|.+    .+..++..|.|.-.-+-..|-.+. .       +-..-|+..-.+.|+++|.+=+..|+-+
T Consensus       313 ~~kl~k~~l~----~~~vAS~AnIGGpaTA~a~A~a~~-~-------~Lv~pgvL~gvlGyaiGty~G~~va~~l  375 (378)
T PF05684_consen  313 LGKLFKIDLF----ELLVASNANIGGPATAPAVAAAKG-P-------SLVPPGVLMGVLGYAIGTYLGLAVAQLL  375 (378)
T ss_pred             HHHHHCCCHH----HHHHHhhcccCCcchHHHHHHhcC-C-------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999954    444577888887666544443332 1       1222588888889999998888887643

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=89.70  E-value=1.5  Score=42.14  Aligned_cols=88  Identities=11%  Similarity=0.064  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhhccCCCChhHHh---hhhHHHHHHHhhHHHH-HHhhccCCcchhhhhh--HHHHHHHHHHHHHHHHH
Q 022430           17 VLLVTALGLVLAIDRIDLLGHSVTH---SLNNLVFYVFNPALIG-SNLAETITYQSLISLW--FMPVNILLSFLIGSALA   90 (297)
Q Consensus        17 vlli~~~G~~la~~~~~~l~~~~~~---~ls~lv~~vflP~Lif-~~l~~~~t~~~l~~~~--~i~v~~~~~~~i~~~lg   90 (297)
                      ...++.+|.++.  ..|+++++..+   ...|++.+.+++.+++ ..++.. +++++.+..  +..+.++.+.+-..+.+
T Consensus       207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t-~l~~L~~a~t~~~vviiv~~Vlg~ii~s  283 (347)
T TIGR00783       207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYI-DLDDLVAALSWQFVVICLSVVVAMILGG  283 (347)
T ss_pred             HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-CHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence            456777888888  99999998755   5555666667776666 455555 899998854  23333333333334555


Q ss_pred             HHHHHHhcCCCccccee
Q 022430           91 WILIKITRTPPHLQGLV  107 (297)
Q Consensus        91 ~l~~~i~~~p~~~rg~~  107 (297)
                      +++.|+++.=+-..+.+
T Consensus       284 ~lvGKllG~YPiE~aIt  300 (347)
T TIGR00783       284 AFLGKLMGMYPVESAIT  300 (347)
T ss_pred             HHHHHHhCCChHHHHHH
Confidence            78899998765554443

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=88.67  E-value=7.2  Score=38.00  Aligned_cols=82  Identities=17%  Similarity=0.237  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhhhHHHHH----HHHHHHHHHH
Q 022430           13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN----ILLSFLIGSA   88 (297)
Q Consensus        13 ~vl~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~~~i~v~----~~~~~~i~~~   88 (297)
                      -+-.++++.+.|.+++  ..|++|.+....+...+...++|..++--+-+. |+.++.+...=++.    ..+.+++|..
T Consensus        24 ~l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG~~  100 (378)
T PF05684_consen   24 YLPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIGAV  100 (378)
T ss_pred             hcCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3445678888899999  899996666677888999999999888888777 88887776543333    3456666777


Q ss_pred             HHHHHHHHh
Q 022430           89 LAWILIKIT   97 (297)
Q Consensus        89 lg~l~~~i~   97 (297)
                      +++.+.+..
T Consensus       101 va~~l~~~~  109 (378)
T PF05684_consen  101 VAFLLFGGF  109 (378)
T ss_pred             HHHHHHhhc
Confidence            776665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	96.57

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=96.57  E-value=0.03  Score=51.99  Aligned_cols=107  Identities=20%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhhccCCCChhHHhhhhHHHHHHHhhHHHHHHhhccCCcchhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 022430           16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSFLIGSALAWILI   94 (297)
Q Consensus        16 ~vlli~~~G~~la~~~~~~l~~~~~~~ls~lv~~vflP~Lif~~l~~~~t~~~l~~~-~~i~v~~~~~~~i~~~lg~l~~   94 (297)
                      .+++=..+|.+++....++ .+...+.+.++.. +.+=..++..++.+  .+.+.+. +.+....++..++++.+||.++
T Consensus       174 ~vllP~~lG~l~r~~~~~~-~~~~~~~l~~~s~-~~illiv~~~~~~~--~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~  249 (332)
T 3zux_A          174 MVLLPIVLGLIVHKVLGSK-TEKLTDALPLVSV-AAIVLIIGAVVGAS--KGKIMESGLLIFAVVVLHNGIGYLLGFFAA  249 (332)
T ss_dssp             HTHHHHHHHHHHHHHHGGG-GHHHHTTHHHHHH-HHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHH-HHHHHHhHHHHHhh--hHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677888777422222 1223333333221 11112222223332  3344332 2333344666789999999999


Q ss_pred             HHhcCCCcccceeeeecccCCcchhHHHHHHhh
Q 022430           95 KITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV  127 (297)
Q Consensus        95 ~i~~~p~~~rg~~i~~~~f~Nt~~Lpl~l~~al  127 (297)
                      |.+|.+++.+..+...|+..|+ .+++++..+.
T Consensus       250 r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~  281 (332)
T 3zux_A          250 KWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH  281 (332)
T ss_dssp             HHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred             HHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH
Confidence            9999998888776666888888 4777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00