Citrus Sinensis ID: 022437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQKMRE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHccHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccccccccccEEEEEEEEccccccEEEEEEEEccccccccccEEEEEEcccccccccccEcccccccccccccccccHHHHHHHHHHccccHHHcHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHcccHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
matasfsnlptrafspsyhnchqSFVIKNitrqipnphlinfsltctsstpnknktcrptvifasgggkggggswgsgggggggdddagfhNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALdtsfageaedvpiiSTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRtgntflgslMWVDYARWVGIQKMRE
Flexible Loop (DISEMBL)
matasfsnlptrafspsyHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFasgggkggggSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQKMRE
Low Complexity Region (SEG)
MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFAsgggkggggswgsgggggggdddagFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQKMRE
Disordered region (IsUnstruct)
***************PSYHNCHQSFVIKNITRQIPNPHLINFSLTCTS********CRPTVIF**************************FHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGI*****
Disordered Region (DISOPRED)
********LPTRAFSPSYHN*H*********RQIPNPHLINFSLTCTSSTPNKNKTCR**************************************IFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADD********TSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINAR**************PIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQ****
Disordered Region (DISEMBL)
MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQKMRE
Disordered Region (DISPRO)
*ATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFASG**K*******************GFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQKMRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
356542804	372	PREDICTED: uncharacterized protein LOC10	0.696	0.556	0.513	7e-65
224059600	382	predicted protein [Populus trichocarpa]	0.444	0.345	0.852	1e-64
225450009	380	PREDICTED: uncharacterized protein LOC10	0.444	0.347	0.852	2e-64
255553448	388	conserved hypothetical protein [Ricinus	0.387	0.296	0.838	5e-64
297736326	214	unnamed protein product [Vitis vinifera]	0.478	0.663	0.852	6e-64
356531649	376	PREDICTED: uncharacterized protein LOC10	0.447	0.353	0.823	1e-62
255544908	392	conserved hypothetical protein [Ricinus	0.478	0.362	0.788	3e-59
225435391	384	PREDICTED: uncharacterized protein LOC10	0.478	0.369	0.739	2e-58
115463661	378	Os05g0388600 [Oryza sativa Japonica Grou	0.464	0.365	0.768	4e-58
125552186	297	hypothetical protein OsI_19813 [Oryza sa	0.464	0.464	0.768	4e-58

>gi|356542804|ref|XP_003539855.1| PREDICTED: uncharacterized protein LOC100818590 [Glycine max]

 Score =  253 bits (646), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 148/288 (51%), Positives = 171/288 (59%), Gaps = 81/288 (28%)

Query: 91  HNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFR 150
            N  EA+  LA+AGR L  LP DLA A+EAGRVP +IVKR  ELEKS VFRWLLNFGGFR
Sbjct: 85  RNREEALLVLAEAGRPLEKLPADLAAAVEAGRVPGSIVKRLFELEKSAVFRWLLNFGGFR 144

Query: 151 ERLLADDLFLVA---------FTGTSYSLIQR---------------IGAIV-------- 178
           ERLLADDLFL           FT T+  L +R               + AIV        
Sbjct: 145 ERLLADDLFLAKVAMECGVGIFTKTAAELEKRKENFTKELDFVCADVVMAIVADFMLVWL 204

Query: 179 --------------------------RNGAKLFAVGTSASLV--------------GVGI 198
                                      N  ++   GTS SL+               VG 
Sbjct: 205 PAPTVSLRPPLAVSAGTIAKFFYGCPENAFQVALAGTSYSLIQRIGAIVRNGAKLFAVGT 264

Query: 199 TNALI---------NARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIE 249
             +LI         NARK +D SFA EAEDVPIISTS+AYGVYMAVSSNLRYQVLAGVIE
Sbjct: 265 GASLIGTGVTNALINARKVVDKSFAAEAEDVPIISTSIAYGVYMAVSSNLRYQVLAGVIE 324

Query: 250 QRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQKMRE 297
           QRILEPLLH++K++L+A+CFA RTGNTFLGSL+WVDYARWVG+QK+R+
Sbjct: 325 QRILEPLLHQHKLMLSAVCFAVRTGNTFLGSLLWVDYARWVGVQKIRD 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059600|ref|XP_002299927.1| predicted protein [Populus trichocarpa] gi|222847185|gb|EEE84732.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/142 (85%), Positives = 132/142 (92%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           D+ F VA  GTSYS +QRIGAI+RNGAKLFAVGT ASLVGVGITNALINARKALD SFAG
Sbjct: 241 DNAFQVALAGTSYSFLQRIGAILRNGAKLFAVGTGASLVGVGITNALINARKALDKSFAG 300

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           EAEDVPI+STSVAYGVYMAVSSNLRYQ+LAGVIEQR+LEP+LH+ K+IL+AICF  RTGN
Sbjct: 301 EAEDVPILSTSVAYGVYMAVSSNLRYQILAGVIEQRLLEPMLHQQKVILSAICFVVRTGN 360

Query: 276 TFLGSLMWVDYARWVGIQKMRE 297
           TFLGSLMWVDYARWVGIQK+RE
Sbjct: 361 TFLGSLMWVDYARWVGIQKIRE 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450009|ref|XP_002274472.1| PREDICTED: uncharacterized protein LOC100255131 [Vitis vinifera]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/142 (85%), Positives = 131/142 (92%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           D+ F VA  GTSYS +QRIGAIVRNGAKLFAVGT ASLVG GITNALINARKA D SFA 
Sbjct: 239 DNAFQVALAGTSYSFLQRIGAIVRNGAKLFAVGTGASLVGTGITNALINARKAFDKSFAA 298

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLH++K++L+A+CFA RTGN
Sbjct: 299 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHQHKLMLSAVCFAVRTGN 358

Query: 276 TFLGSLMWVDYARWVGIQKMRE 297
           TFLGSLMWVDYARW+GIQK+RE
Sbjct: 359 TFLGSLMWVDYARWIGIQKIRE 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553448|ref|XP_002517765.1| conserved hypothetical protein [Ricinus communis] gi|223543037|gb|EEF44572.1| conserved hypothetical protein [Ricinus communis]

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/142 (83%), Positives = 131/142 (92%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           D+ F VA  GTSYS +QR+GAIVRNG KLFAVGTSASLVGVG+TN LINARK LD SFAG
Sbjct: 247 DNAFQVALAGTSYSFLQRVGAIVRNGGKLFAVGTSASLVGVGVTNILINARKILDKSFAG 306

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           EAEDVPI+STS+ YGVYMAVSSNLRYQ+LAGVIEQRILEPLLH++K+IL+AICFA RTGN
Sbjct: 307 EAEDVPIVSTSIGYGVYMAVSSNLRYQILAGVIEQRILEPLLHQHKVILSAICFAVRTGN 366

Query: 276 TFLGSLMWVDYARWVGIQKMRE 297
           TFLGSLMWVDYARWVGIQK+RE
Sbjct: 367 TFLGSLMWVDYARWVGIQKIRE 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736326|emb|CBI24964.3| unnamed protein product [Vitis vinifera]

 Score =  250 bits (638), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/142 (85%), Positives = 131/142 (92%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           D+ F VA  GTSYS +QRIGAIVRNGAKLFAVGT ASLVG GITNALINARKA D SFA 
Sbjct: 73  DNAFQVALAGTSYSFLQRIGAIVRNGAKLFAVGTGASLVGTGITNALINARKAFDKSFAA 132

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLH++K++L+A+CFA RTGN
Sbjct: 133 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHQHKLMLSAVCFAVRTGN 192

Query: 276 TFLGSLMWVDYARWVGIQKMRE 297
           TFLGSLMWVDYARW+GIQK+RE
Sbjct: 193 TFLGSLMWVDYARWIGIQKIRE 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531649|ref|XP_003534389.1| PREDICTED: uncharacterized protein LOC100808020 [Glycine max]

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 132/142 (92%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           ++ F VA  GTSYSLIQRIGAIVRNGAKLFAVGT ASL+G G+TNALINARK +D SFA 
Sbjct: 235 ENAFQVALAGTSYSLIQRIGAIVRNGAKLFAVGTGASLIGTGVTNALINARKVVDKSFAA 294

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           EAEDVPIISTS+AYGVYMAVSSNLRYQVLAGVIEQRILEPLLH++K++L+AICFA RTGN
Sbjct: 295 EAEDVPIISTSIAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHQHKLMLSAICFAVRTGN 354

Query: 276 TFLGSLMWVDYARWVGIQKMRE 297
           TFLGSL+WVDYARWVG+QK+R+
Sbjct: 355 TFLGSLLWVDYARWVGVQKIRD 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544908|ref|XP_002513515.1| conserved hypothetical protein [Ricinus communis] gi|223547423|gb|EEF48918.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 130/142 (91%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           D+ F VA  GTSYSL+QR+GAIVRNGAKLFAVGT++SLVG  +TNALINARKA+D S AG
Sbjct: 245 DNAFQVALAGTSYSLLQRLGAIVRNGAKLFAVGTTSSLVGTAVTNALINARKAVDKSSAG 304

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           E E+VPI+STSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLH++K++L+AICFA RTGN
Sbjct: 305 EVENVPIVSTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHQHKLMLSAICFAVRTGN 364

Query: 276 TFLGSLMWVDYARWVGIQKMRE 297
           T+LGSL+WVDYAR +GIQK +E
Sbjct: 365 TYLGSLLWVDYARLIGIQKAQE 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435391|ref|XP_002285363.1| PREDICTED: uncharacterized protein LOC100265633 [Vitis vinifera]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/142 (73%), Positives = 132/142 (92%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           ++ F VA  GTS+S +QRIGAIVRNG+KLFAVGT++SLVG  +TNA+INARKA+D+S AG
Sbjct: 240 ENAFQVALAGTSFSFLQRIGAIVRNGSKLFAVGTTSSLVGTLVTNAIINARKAVDSSSAG 299

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           E EDVP++STSVAYGVYMA+SSNLRYQV+AGV+EQRILEP+LH++K++L+A+CFA RTGN
Sbjct: 300 EVEDVPVLSTSVAYGVYMAISSNLRYQVVAGVVEQRILEPMLHKHKLLLSALCFAVRTGN 359

Query: 276 TFLGSLMWVDYARWVGIQKMRE 297
           TFLGSL+WVDYARWVG+QK++E
Sbjct: 360 TFLGSLLWVDYARWVGVQKVQE 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115463661|ref|NP_001055430.1| Os05g0388600 [Oryza sativa Japonica Group] gi|54287600|gb|AAV31344.1| unknown protein [Oryza sativa Japonica Group] gi|113578981|dbj|BAF17344.1| Os05g0388600 [Oryza sativa Japonica Group] gi|215740932|dbj|BAG97427.1| unnamed protein product [Oryza sativa Japonica Group] gi|222631454|gb|EEE63586.1| hypothetical protein OsJ_18403 [Oryza sativa Japonica Group]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 126/138 (91%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           D+ F VA  GTSYSL+QR+GAI+RNGAKLFAVGTSASL+G G+TNALI ARKA+   F G
Sbjct: 241 DNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTSASLIGTGVTNALIKARKAVSKDFEG 300

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           E+ED+PI+STSVAYGVYMAVSSNLRYQ+LAGVIEQR+LEPLLH +K++L+A+CFA RTGN
Sbjct: 301 ESEDIPIVSTSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHHHKLVLSALCFAVRTGN 360

Query: 276 TFLGSLMWVDYARWVGIQ 293
           TFLGSL+WVDYA+W+GIQ
Sbjct: 361 TFLGSLLWVDYAKWIGIQ 378

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125552186|gb|EAY97895.1| hypothetical protein OsI_19813 [Oryza sativa Indica Group]

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 126/138 (91%)

Query: 156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
           D+ F VA  GTSYSL+QR+GAI+RNGAKLFAVGTSASL+G G+TNALI ARKA+   F G
Sbjct: 160 DNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTSASLIGTGVTNALIKARKAVSKDFEG 219

Query: 216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
           E+ED+PI+STSVAYGVYMAVSSNLRYQ+LAGVIEQR+LEPLLH +K++L+A+CFA RTGN
Sbjct: 220 ESEDIPIVSTSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHHHKLVLSALCFAVRTGN 279

Query: 276 TFLGSLMWVDYARWVGIQ 293
           TFLGSL+WVDYA+W+GIQ
Sbjct: 280 TFLGSLLWVDYAKWIGIQ 297

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:505006615	386	AT5G12470 "AT5G12470" [Arabido	0.468	0.360	0.733	5.9e-74
TAIR|locus:2063136	735	AT2G40400 [Arabidopsis thalian	0.478	0.193	0.351	7.6e-28
TAIR|locus:2078446	745	AT3G56140 "AT3G56140" [Arabido	0.478	0.190	0.344	2.7e-27
TAIR|locus:2077828	339	AT3G08630 "AT3G08630" [Arabido	0.434	0.380	0.343	1.3e-13
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.451	0.309	0.303	1.8e-13
TAIR|locus:2077838	337	AT3G08640 "AT3G08640" [Arabido	0.434	0.382	0.328	5e-13
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.468	0.321	0.306	5.9e-13

TAIR|locus:505006615 AT5G12470 "AT5G12470" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
 Identities = 102/139 (73%), Positives = 123/139 (88%)

Query:   156 DDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAG 215
             D+ F VA +GTSY+L+QR+GAI RNGAKLFAVGT++SLVG  ITNA I ARKA+D +  G
Sbjct:   246 DNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKAVDQNSEG 305

Query:   216 EAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGN 275
             E E VPI+STSVAYGVYMAVSSNLRYQ++AGVIEQR+LEP+LH++K+ L+A+CFA RTGN
Sbjct:   306 EVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQHKLALSALCFAVRTGN 365

Query:   276 TFLGSLMWVDYARWVGIQK 294
             TFLGSL+WVDYAR +GIQK
Sbjct:   366 TFLGSLLWVDYARLIGIQK 384

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2063136 AT2G40400 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
 Identities = 51/145 (35%), Positives = 83/145 (57%)

Query:   154 LADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSF 213
             + D+ F  +  G  ++L  RI +++  G KL  VG  +S   VG +NAL   RK +    
Sbjct:   559 IPDNAFQKSLGGQEWTLSLRIASVIIGGLKLAGVGVVSSFAAVGSSNALYAIRKFIKPEL 618

Query:   214 A-GE-AEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAF 271
               GE A+  P++ T++ YG Y+  SSN+RYQ++AG+IE RI + L  +  +++  I F  
Sbjct:   619 GVGEQAKRSPMLKTALVYGGYLGTSSNIRYQIIAGLIEHRISDELSSQ-PLLVNMISFVV 677

Query:   272 RTGNTFLGSLMWVDYARWVGIQKMR 296
             R  N++ G+  W+D AR  G+Q  +
Sbjct:   678 RVANSYFGTQQWIDLARSTGLQTQK 702

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2078446 AT3G56140 "AT3G56140" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 50/145 (34%), Positives = 85/145 (58%)

Query:   154 LADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSF 213
             + D+ F  +  G  ++L  RI +++  G KL  VG  +S   VG +NAL  ARK +    
Sbjct:   568 IPDNAFQKSLAGREWNLNLRIASVIVGGLKLAGVGVVSSFAAVGASNALNIARKVIKPEL 627

Query:   214 --AGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAF 271
               A + +  P++ T++ YG ++  S+NLRYQ++AG+IE R+ + L  +  +++ AI F  
Sbjct:   628 VVAEKPKRSPLLKTAMVYGGFLGTSANLRYQIIAGLIEHRLSDELSSQ-PLLVNAISFVV 686

Query:   272 RTGNTFLGSLMWVDYARWVGIQKMR 296
             RT N++ G+  W+D AR  G+Q  +
Sbjct:   687 RTLNSYFGTQQWIDLARSTGLQTQK 711

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2077828 AT3G08630 "AT3G08630" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 47/137 (34%), Positives = 71/137 (51%)

Query:   163 FTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPI 222
             F   +++L+ R G +V  G     VG +A LVG  I+N LI  RK +D SF    +  P 
Sbjct:   193 FEQGNFTLMNRFGTLVYKGMVFATVGLAAGLVGTAISNGLIMLRKKIDPSFETPNKPPPT 252

Query:   223 ISTSVAYGVYMAVSSNLRYQVLAGV--IEQRILEPLLHENKIILAAICFAFRTGNTFLGS 280
             +  S+ +  +M VS+N+RYQ L G   + ++ L PL+ +  +I      A R  N  LG 
Sbjct:   253 LLNSLTWATHMGVSANVRYQTLNGAEFLLEKSLPPLVFKTSVI------ALRVVNNVLGG 306

Query:   281 LMWVDYARWVGIQKMRE 297
             + +V  AR  G Q + E
Sbjct:   307 MSFVTLARMTGSQSVEE 323

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 44/145 (30%), Positives = 75/145 (51%)

Query:   154 LADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSF 213
             L   +F     G  +S+ QRI      G    +VG    L+G GI N ++ A++++  S 
Sbjct:   295 LPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKS- 353

Query:   214 AGEAEDVPI---ISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFA 270
                 EDVPI     ++  +GV++ +SSN RYQ++ G+  +R++E      +I + A+ F 
Sbjct:   354 ---EEDVPIPPLFESAALWGVFLGLSSNARYQIINGL--ERVVEGSTAAKRIPVVAMAFT 408

Query:   271 F--RTGNTFLGSLMWVDYARWVGIQ 293
                R  N   G + +VD+A+  G+Q
Sbjct:   409 VGVRFANNVYGGMQFVDWAKLSGVQ 433

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077838 AT3G08640 "AT3G08640" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 45/137 (32%), Positives = 71/137 (51%)

Query:   163 FTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPI 222
             F   S++++ R G +V  G    +VG +A LVG  I+N LI  RK +D SF    +  P 
Sbjct:   196 FEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPT 255

Query:   223 ISTSVAYGVYMAVSSNLRYQVLAGV--IEQRILEPLLHENKIILAAICFAFRTGNTFLGS 280
             +  S+ +  +M VS+N RYQ L G+  +  ++L PL+ +  +I+       R  N   G 
Sbjct:   256 VLNSLTWATHMGVSANARYQTLNGIEFLLAKVLPPLVFKTSVIV------LRCANNVAGG 309

Query:   281 LMWVDYARWVGIQKMRE 297
             + +V  AR  G Q + E
Sbjct:   310 MSFVLLARMTGSQSVEE 326

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
 Identities = 46/150 (30%), Positives = 75/150 (50%)

Query:   149 FRERLLADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKA 208
             F    L   +F     G  +S  QR+      G    AVG    +VG GI N ++ A++ 
Sbjct:   289 FAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRN 348

Query:   209 LDTSFAGEAEDVPI---ISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILA 265
             ++ S     E++P+   I ++  +GV+++VSSN RYQ++ G+  +R++E      K   A
Sbjct:   349 INKS----EENIPVPPLIKSAALWGVFLSVSSNTRYQIINGL--ERVVEASPFAKKFPPA 402

Query:   266 AICFAF--RTGNTFLGSLMWVDYARWVGIQ 293
             A+ F    R  N   G + +VD+AR  G Q
Sbjct:   403 AMAFTVGVRLANNIYGGMQFVDWARLSGCQ 432

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	4e-30
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	1e-04

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score =  111 bits (280), Expect = 4e-30
 Identities = 42/94 (44%), Positives = 59/94 (62%)

Query: 154 LADDLFLVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSF 213
           L  ++F     G SYSL QR G +   GAKL AVG  A LVG  I+NAL+ ARKA+D + 
Sbjct: 85  LPSNVFEKGLPGRSYSLQQRFGTVFYKGAKLAAVGFIAGLVGQAISNALMAARKAVDKNS 144

Query: 214 AGEAEDVPIISTSVAYGVYMAVSSNLRYQVLAGV 247
               +  P+  T++ +G ++ VS+NLRYQ+L G+
Sbjct: 145 EESVKVPPLFKTALLWGAFLGVSANLRYQLLNGL 178

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 17/103 (16%)

Query: 4   ASFSNLPTRAFSPSYHNCH------QSFVIKNITRQIPNPHLINFSLTCTSST------- 50
            S S + + A S S  +         S   ++ TR      +   +    SS+       
Sbjct: 2   RSSSTMVSAAASTSLSSSRPQLSSFSSRSPQSATRSPRASSIKCSASASASSSATSSSAS 61

Query: 51  ----PNKNKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAG 89
                         +    GGG GG G +G GGGGGGG     
Sbjct: 62  LVANGAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGW 104

Length = 796

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
PF11891	180	DUF3411: Domain of unknown function (DUF3411); Int	100.0
PF02979	188	NHase_alpha: Nitrile hydratase, alpha chain; Inter	82.52
COG4907	595	Predicted membrane protein [Function unknown]	81.43

>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=1.4e-38  Score=281.79  Aligned_cols=87  Identities=53%  Similarity=0.833  Sum_probs=85.4

Q ss_pred             hhccCCCCchhhhHHHHhhcchhhhhhhhhHhhHHHHHHHHHHHHHHhcCcCCCCCCCCCCchhhhhHHHHHhhcchhhH
Q 022437          161 VAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVAYGVYMAVSSNLR  240 (297)
Q Consensus       161 ~a~pg~~fsl~qR~aa~v~KGa~l~~VGf~aGlvG~glSN~L~a~RK~~dpsf~~~~~~pPil~tA~~wg~fMGvSSNlR  240 (297)
                      +++||++||++||++||+|||++|++|||+||++|+++||+|+++||++||+||+++++||+++||++||+|||+|||+|
T Consensus        93 ~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~~~g~fmGvSsNlR  172 (180)
T PF11891_consen   93 KGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTALGWGAFMGVSSNLR  172 (180)
T ss_pred             cCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHhhhHhHH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 022437          241 YQVLAGV  247 (297)
Q Consensus       241 YQiL~Gl  247 (297)
                      ||+|||+
T Consensus       173 YQil~Gi  179 (180)
T PF11891_consen  173 YQILNGI  179 (180)
T ss_pred             HHHHcCC
Confidence            9999998

This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.

>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4

Probab=82.52  E-value=0.77  Score=42.10  Aligned_cols=44  Identities=36%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             HHHcCCCCHHHHHHHHhcccc---hh--hHhhhh---ccchhhhhccchhhh
Q 022437          117 AIEAGRVPAAIVKRYLELEKS---PV--FRWLLN---FGGFRERLLADDLFL  160 (297)
Q Consensus       117 A~e~G~Vs~~~L~rfl~l~~~---p~--~~~l~r---f~gfR~RlLADP~FL  160 (297)
                      -+|.|.|+++.+.++.+...+   |-  .+.+.|   -|+||+|||+||.=.
T Consensus        16 l~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~Dp~FK~rLLaD~~aA   67 (188)
T PF02979_consen   16 LIEKGLITPAEVDRIIETYESRVGPRNGARVVARAWTDPAFKARLLADPTAA   67 (188)
T ss_dssp             HHHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHHSHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHhccCccccceeehhhhCCHHHHHHHHHCHHHH
Confidence            368999999999998887654   43  123333   499999999999855

2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....

>COG4907 Predicted membrane protein [Function unknown]

Probab=81.43  E-value=0.98  Score=46.79  Aligned_cols=8  Identities=25%  Similarity=0.434  Sum_probs=3.4

Q ss_pred             eccccCCC
Q 022437           28 KNITRQIP   35 (297)
Q Consensus        28 ~~~~~~~~   35 (297)
                      ||-+|--.
T Consensus       551 ~nysr~~~  558 (595)
T COG4907         551 NNYSRSFN  558 (595)
T ss_pred             cchhhhhc
Confidence            44444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	93.1

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=93.10  E-value=0.0093  Score=56.32  Aligned_cols=9  Identities=0%  Similarity=-0.164  Sum_probs=3.8

Q ss_pred             ccCCCCCcc
Q 022437           31 TRQIPNPHL   39 (297)
Q Consensus        31 ~~~~~~~~~   39 (297)
                      .+.+..++.
T Consensus       246 ~~~~~~L~~  254 (358)
T 2pk2_A          246 EKTPNRLKR  254 (358)
T ss_dssp             TTCTTHHHH
T ss_pred             HhCcccccc
Confidence            344444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1ugpa_	203	Cobalt-containing nitrile hydratase {Pseudonocardi	80.9
d1v29a_	203	Cobalt-containing nitrile hydratase {Bacillus smit	80.29

>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}

class: Alpha and beta proteins (a+b)
fold: Nitrile hydratase alpha chain
superfamily: Nitrile hydratase alpha chain
family: Nitrile hydratase alpha chain
domain: Cobalt-containing nitrile hydratase
species: Pseudonocardia thermophila [TaxId: 1848]

Probab=80.90  E-value=0.37  Score=41.24  Aligned_cols=44  Identities=30%  Similarity=0.487  Sum_probs=33.5

Q ss_pred             HHHcCCCCHHHHHHHHhc-cc--chhh--Hhhhh---ccchhhhhccchhhh
Q 022437          117 AIEAGRVPAAIVKRYLEL-EK--SPVF--RWLLN---FGGFRERLLADDLFL  160 (297)
Q Consensus       117 A~e~G~Vs~~~L~rfl~l-~~--~p~~--~~l~r---f~gfR~RlLADP~FL  160 (297)
                      -+|.|+|+++.+.++.+. +.  .|..  +.+.|   -+.||+|||+|+.=-
T Consensus        27 LieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~aA   78 (203)
T d1ugpa_          27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEA   78 (203)
T ss_dssp             HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            468999999999999994 43  4652  23333   499999999999754

>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}

class: Alpha and beta proteins (a+b)
fold: Nitrile hydratase alpha chain
superfamily: Nitrile hydratase alpha chain
family: Nitrile hydratase alpha chain
domain: Cobalt-containing nitrile hydratase
species: Bacillus smithii [TaxId: 1479]

Probab=80.29  E-value=0.37  Score=41.21  Aligned_cols=44  Identities=23%  Similarity=0.364  Sum_probs=33.3

Q ss_pred             HHHcCCCCHHHHHHHHh-ccc--chh--hHhhhh---ccchhhhhccchhhh
Q 022437          117 AIEAGRVPAAIVKRYLE-LEK--SPV--FRWLLN---FGGFRERLLADDLFL  160 (297)
Q Consensus       117 A~e~G~Vs~~~L~rfl~-l~~--~p~--~~~l~r---f~gfR~RlLADP~FL  160 (297)
                      -+|.|+|+++.+.+.++ ++.  .|.  .+.+.|   -+.||+|||+|+.=-
T Consensus        26 LieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~aA   77 (203)
T d1v29a_          26 LIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPETV   77 (203)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHH
Confidence            46899999999999998 444  364  233333   499999999999754