Citrus Sinensis ID: 022473

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MSGNANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSEEDACDEDDDEDGEDGEDGGDDPDGAYDLDDNHEHRTVIKCEPHVAFSGV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccEEccccEEcccccccccccccccEEEEccccccccccccccEEEEEEccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccEEEccEEEccccccccHHHccccEEEEEcccccccccccccEEEEEEccccccHHHHHHHHHHcccccccccccccccccHHHHHHcccccccHHHHHccccccEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEccc
Coil and Loop (DISEMBL)
msgnankrlrpnppsqvpesgdsgifnERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIEtlangapngringGWHALAKLMFHccgcestrnfkvskaspahfvqasrfsktsgrsfltkkcrgdllyvsdpcehpmgnkeddlgiFRGVFRGFLKSTTRACLIRRRVELEervkcpycgarvwsmtaarlVPKSAARrlgshdgglEYFVCINGhlhgscwlvplsseedacdedddedgedgedggddpdgaydlddnhehrtvikcephvafsgv
Flexible Loop (DISEMBL)
msgnankrlrpnppsqvpesgdsGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIEtlangapngRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFvqasrfsktsgrsfltkKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIrrrveleervkcpycgarvwsmtaaRLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSEEDACDEDDDEDGEDGEDGGDDPDGAYDLDDNHEHRTVIKCEPHVAFSGV
Low Complexity Region (SEG)
MSGNANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIrrrveleervKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSeedacdedddedgedgedggddpdgaydlddNHEHRTVIKCEPHVAFSGV
Disordered region (IsUnstruct)
***********************GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRF****GRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPL****************************************************
Disordered Region (DISOPRED)
***************************ERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPR*****************WHALAKLMFHCCGCESTRN*KVSKASPAHFVQA*********SFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLV******************************YDLDDNHEHRTVIKCEPHVAFS**
Disordered Region (DISEMBL)
*******************SGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSE*****************GGDDPDGAYDLDDNHEHRTVIKCEPHVAFSGV
Disordered Region (DISPRO)
***********************GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP***************************GAYDLDDNHEHRTVIKCEPHVAFSG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGNANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSEEDACDEDDDEDGEDGEDGGDDPDGAYDLDDNHEHRTVIKCEPHVAFSGV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q93ZT5	272	EID1-like F-box protein 3	yes	no	0.820	0.893	0.658	8e-93
Q9LF38	293	EID1-like F-box protein 1	no	no	0.817	0.825	0.423	4e-55
Q9FLZ8	249	EID1-like F-box protein 2	no	no	0.760	0.903	0.407	3e-48

>sp|Q93ZT5|EDL3_ARATH EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1

 Score =  340 bits (872), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 160/243 (65%), Positives = 193/243 (79%)

Query: 4   NANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLL 63
           N N+RL+ N PS++P SG SGI NER+L+LVFES+ WD+H LC  ASL R+  AIA R+L
Sbjct: 13  NTNRRLKFNQPSRLPNSGKSGIENERVLVLVFESISWDIHTLCTIASLSRRFCAIARRIL 72

Query: 64  WRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQ 123
           WR+LC  RAP M+  L+   P+GRI+GGWHALAKLMF C G ESTR F +S+ +  HF  
Sbjct: 73  WRRLCVNRAPGMVAALSGEDPSGRIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFAC 132

Query: 124 ASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIR 183
            SRFSKTSGR FL K CR DLLY+SDPCEH     ++ LG+FRGVFR F++S TR CL+R
Sbjct: 133 ESRFSKTSGRFFLPKNCRRDLLYMSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVR 192

Query: 184 RRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP 243
           R+  LEE+V+CPYCG RVWSMTAARLVPKSAARRLGS +GGLE+FVC+NGHLHG+CWL+P
Sbjct: 193 RQAALEEKVRCPYCGGRVWSMTAARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIP 252

Query: 244 LSS 246
           LSS
Sbjct: 253 LSS 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis thaliana GN=EDL1 PE=2 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/243 (42%), Positives = 148/243 (60%), Gaps = 1/243 (0%)

Query: 24  GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGA 83
           G  NE +LLLVF+ + W+  ++   + + R     A+R+LW++ C+ RAP+M+  L +  
Sbjct: 20  GHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSG 79

Query: 84  PNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGD 143
            +  I+G W AL KL+ +C GC     F  S   P HFV  +RFS+T GRS L  +CR D
Sbjct: 80  SHC-IDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRTRFSRTLGRSLLPPQCRTD 138

Query: 144 LLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWS 203
           +LYV DPCEH    +E D+G+FRG+F+ F  S  R  +I + V       CPYC A++WS
Sbjct: 139 VLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPFHPSEVCPYCKAKLWS 198

Query: 204 MTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSEEDACDEDDDEDGEDGE 263
           M  A+++P+SA  RL +++  +EYFVC+NGHL G C L PLS  EDA   +D+   E  +
Sbjct: 199 MLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLSDSEDAIPSEDNNHTEKKQ 258

Query: 264 DGG 266
           D G
Sbjct: 259 DNG 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLZ8|EDL2_ARATH EID1-like F-box protein 2 OS=Arabidopsis thaliana GN=EDL2 PE=2 SV=1

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 143/228 (62%), Gaps = 3/228 (1%)

Query: 24  GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGA 83
           G  +E +L L+ + + W+ +++   + + +    +A+RLLW++ C  RAP+M+  L +  
Sbjct: 20  GHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDLQSSG 79

Query: 84  PNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGD 143
            +  ++G W AL KL+ +C G      F   + S  HFV  +RFS+TSGRSFL  +CR D
Sbjct: 80  SHS-VDGSWRALGKLLIYCSGSSKGGLFNDVQIS-GHFVHRTRFSRTSGRSFLPPQCRTD 137

Query: 144 -LLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVW 202
            +LYVSDPCEH    ++ DLG FRG+F+ F  S  R  LI++         CPYC A++W
Sbjct: 138 DILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKGTPFHPTEVCPYCKAKLW 197

Query: 203 SMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSEEDA 250
           SM  A+++P+SA+ RLG+++  +EY+VC+NGH+ G C L+PLS  E A
Sbjct: 198 SMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPLSDSEGA 245

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
225436956	300	PREDICTED: EID1-like F-box protein 3-lik	0.820	0.81	0.773	1e-111
449533689	313	PREDICTED: EID1-like F-box protein 3-lik	0.841	0.795	0.742	1e-108
449444911	313	PREDICTED: EID1-like F-box protein 3-lik	0.841	0.795	0.738	1e-108
255584710	279	conserved hypothetical protein [Ricinus	0.837	0.888	0.721	1e-105
14210079	291	circadian clock coupling factor ZGT [Nic	0.837	0.852	0.677	1e-97
297821222	268	hypothetical protein ARALYDRAFT_486810 [	0.854	0.944	0.656	2e-95
7573435	377	putative protein [Arabidopsis thaliana]	0.820	0.644	0.658	1e-91
18412596	272	EID1-like F-box protein 3 [Arabidopsis t	0.820	0.893	0.658	5e-91
414880100	362	TPA: hypothetical protein ZEAMMB73_31409	0.804	0.657	0.560	1e-75
357131159	289	PREDICTED: EID1-like F-box protein 3-lik	0.746	0.764	0.575	2e-72

>gi|225436956|ref|XP_002276328.1| PREDICTED: EID1-like F-box protein 3-like [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/243 (77%), Positives = 218/243 (89%)

Query: 4   NANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLL 63
           +AN+RLR N P    +SG+SGI NERIL+L+FES+ WD+H+LC  ++++RKLRA+A RLL
Sbjct: 2   SANQRLRLNSPGPASDSGESGILNERILVLIFESIKWDIHVLCAASAVNRKLRAVATRLL 61

Query: 64  WRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQ 123
           WR+LC  RAPRM+  LA GAPNGR+ GGWHALAKLMF CCGCESTR+F+VS+ SP HFV+
Sbjct: 62  WRELCVYRAPRMVTALATGAPNGRLGGGWHALAKLMFFCCGCESTRHFRVSRPSPGHFVK 121

Query: 124 ASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIR 183
            SRFSKTSGRSFLTKKC GDLLYVSDPCEHPMG +EDDLGI+RGVFRGF++S TRACLIR
Sbjct: 122 ESRFSKTSGRSFLTKKCSGDLLYVSDPCEHPMGEREDDLGIYRGVFRGFMRSKTRACLIR 181

Query: 184 RRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP 243
           R+V+LEERV CPYCGARVWSMTAARLVPKSAARRLG+HDGGLEYFVC+NGHLHG+CWLVP
Sbjct: 182 RQVKLEERVCCPYCGARVWSMTAARLVPKSAARRLGTHDGGLEYFVCLNGHLHGTCWLVP 241

Query: 244 LSS 246
           LSS
Sbjct: 242 LSS 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533689|ref|XP_004173804.1| PREDICTED: EID1-like F-box protein 3-like [Cucumis sativus]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/249 (74%), Positives = 211/249 (84%)

Query: 1   MSGNANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE 60
           M+ N N+R +P+P  Q  ES DSGIFNERILLLVF ++ WDL  LC+TASL+RKLRAIAE
Sbjct: 1   MNANTNRRFKPSPSPQGSESDDSGIFNERILLLVFRTIKWDLRTLCITASLNRKLRAIAE 60

Query: 61  RLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAH 120
           RLLWR+LC  RAPRM+  L  GAPN R+ GGW+ALAKLMF CCGC+S+R+FKV++  P H
Sbjct: 61  RLLWRELCFNRAPRMLAALTTGAPNARVGGGWNALAKLMFFCCGCQSSRHFKVAQPLPGH 120

Query: 121 FVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRAC 180
           FV  SRFSKTSG+SFLTKKCRGDLLYVSDPCEH  G  EDDLGI+RG+FRGF++S TRA 
Sbjct: 121 FVHESRFSKTSGQSFLTKKCRGDLLYVSDPCEHSNGRDEDDLGIYRGIFRGFMRSKTRAF 180

Query: 181 LIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCW 240
           LI+R V LEE  +CPYCGARVWSMT ARLVPKS ARRLG+HDGGLEYFVC+NGHLHGSCW
Sbjct: 181 LIKREVRLEETTRCPYCGARVWSMTTARLVPKSVARRLGTHDGGLEYFVCVNGHLHGSCW 240

Query: 241 LVPLSSEED 249
           LVPLSSEED
Sbjct: 241 LVPLSSEED 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444911|ref|XP_004140217.1| PREDICTED: EID1-like F-box protein 3-like [Cucumis sativus]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/249 (73%), Positives = 211/249 (84%)

Query: 1   MSGNANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE 60
           M+ N N+R +P+P  Q  ES DSGIFNERILLLVF ++ WDL  LC+TASL+RKLRAIAE
Sbjct: 1   MNANTNRRFKPSPSPQGSESDDSGIFNERILLLVFRTIKWDLRTLCITASLNRKLRAIAE 60

Query: 61  RLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAH 120
           RLLWR+LC  RAPRM+  L  GAPN R+ GGW+ALAKLMF CCGC+S+R+FKV++  P H
Sbjct: 61  RLLWRELCFNRAPRMLAALTTGAPNARVGGGWNALAKLMFFCCGCQSSRHFKVAQPLPGH 120

Query: 121 FVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRAC 180
           FV  SRFSKTSG+SFLTKKCRGDLLYVSDPCEH  G  ED+LGI+RG+FRGF++S TRA 
Sbjct: 121 FVHESRFSKTSGQSFLTKKCRGDLLYVSDPCEHSNGRDEDNLGIYRGIFRGFMRSKTRAF 180

Query: 181 LIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCW 240
           LI+R V LEE  +CPYCGARVWSMT ARLVPKS ARRLG+HDGGLEYFVC+NGHLHGSCW
Sbjct: 181 LIKREVRLEETTRCPYCGARVWSMTTARLVPKSVARRLGTHDGGLEYFVCVNGHLHGSCW 240

Query: 241 LVPLSSEED 249
           LVPLSSEED
Sbjct: 241 LVPLSSEED 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584710|ref|XP_002533076.1| conserved hypothetical protein [Ricinus communis] gi|223527140|gb|EEF29315.1| conserved hypothetical protein [Ricinus communis]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/248 (72%), Positives = 213/248 (85%)

Query: 4   NANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLL 63
           NA ++L+ + P+Q  +SG+SGI NERIL+LVFES+ WDLH LC TAS++RKLRAIA+R L
Sbjct: 2   NAGRKLKTSTPNQGCDSGESGILNERILVLVFESIKWDLHALCATASVNRKLRAIAKRFL 61

Query: 64  WRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQ 123
           WR+LC  RAPRM+ +L NGAPN      WHA+AKLMF+CCGCEST+NFKVS+ SP HF++
Sbjct: 62  WRELCVYRAPRMLASLTNGAPNAPFGDSWHAIAKLMFYCCGCESTQNFKVSQPSPGHFIE 121

Query: 124 ASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIR 183
            SRFSKTSG+SFL KKCRGDLLYVSDPCEH   N EDDLGI+RGVF+GF+KS TRACLIR
Sbjct: 122 TSRFSKTSGQSFLNKKCRGDLLYVSDPCEHSASNNEDDLGIYRGVFKGFMKSRTRACLIR 181

Query: 184 RRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP 243
           R+VELE+R +CPYCG RVWSMT+ARLVPK+AARRLGS + GLEYFVC+NGHL+G CWLVP
Sbjct: 182 RQVELEKRTRCPYCGFRVWSMTSARLVPKTAARRLGSREDGLEYFVCLNGHLYGCCWLVP 241

Query: 244 LSSEEDAC 251
           LSS+ED C
Sbjct: 242 LSSDEDNC 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14210079|gb|AAK56924.1|AF368237_1 circadian clock coupling factor ZGT [Nicotiana tabacum]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/248 (67%), Positives = 206/248 (83%)

Query: 1   MSGNANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE 60
           MS N +K+   N      ES  SGI++ERIL+ VF S+ WD+  LC  + ++RKLRA+A+
Sbjct: 1   MSDNHSKKRLFNSAGDSSESEGSGIYDERILIPVFASINWDIRTLCQMSCVNRKLRAVAK 60

Query: 61  RLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAH 120
           R+LWR++C  RAP+MI  L +G+P+GRI GGW A+AKLMF C GC S+R+F+V + +P H
Sbjct: 61  RILWREMCVYRAPQMITALTDGSPSGRIGGGWQAMAKLMFFCNGCRSSRHFQVGEPAPGH 120

Query: 121 FVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRAC 180
           FV+ SRFSKTSGRSFL KKCR DLLYVSDPCEHP G+K+DDLGIFRGVF GF++S TRAC
Sbjct: 121 FVKTSRFSKTSGRSFLVKKCRNDLLYVSDPCEHPTGDKDDDLGIFRGVFWGFMRSRTRAC 180

Query: 181 LIRRRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCW 240
           LIRR+VELEE++KCP+CGARVWSMTAARLVPKSAARRLGS + GLEYFVC+NGHLHG+CW
Sbjct: 181 LIRRQVELEEKIKCPFCGARVWSMTAARLVPKSAARRLGSMESGLEYFVCVNGHLHGACW 240

Query: 241 LVPLSSEE 248
           LVPLSS+E
Sbjct: 241 LVPLSSDE 248

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821222|ref|XP_002878494.1| hypothetical protein ARALYDRAFT_486810 [Arabidopsis lyrata subsp. lyrata] gi|297324332|gb|EFH54753.1| hypothetical protein ARALYDRAFT_486810 [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/256 (65%), Positives = 206/256 (80%), Gaps = 3/256 (1%)

Query: 4   NANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLL 63
           N N+RLR N PS++P SG+SGI NE++L+LVFES+ WD+H LC  ASL R+  AIA+R+L
Sbjct: 13  NTNRRLRFNQPSRLPSSGESGIENEQVLVLVFESISWDIHTLCTIASLSRRFCAIAKRIL 72

Query: 64  WRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQ 123
           WR+LC  RAP M+  L++  P+GRI+GGWHALAKLMF C G ESTR F +S+ SP HF  
Sbjct: 73  WRRLCVNRAPGMVAALSSSDPSGRIDGGWHALAKLMFFCGGGESTRYFNLSQPSPGHFAC 132

Query: 124 ASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIR 183
            SRFSKTSGR FL K CR DLLY+SDPCEH     ++ LG+FRGVFR F++S TR CL+R
Sbjct: 133 ESRFSKTSGRFFLPKNCRRDLLYMSDPCEHHAVGGDEHLGVFRGVFREFMRSKTRECLVR 192

Query: 184 RRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP 243
           R+  LEE+V+CPYCG RVWSMTAARLVPKSAARRLGS +GGLE+FVC+NGHLHG+CWL+P
Sbjct: 193 RQAALEEKVRCPYCGGRVWSMTAARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIP 252

Query: 244 LSSEEDACDEDDDEDG 259
           LSSEE   ++DD+ DG
Sbjct: 253 LSSEE---EDDDNSDG 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7573435|emb|CAB87751.1| putative protein [Arabidopsis thaliana]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/243 (65%), Positives = 193/243 (79%)

Query: 4   NANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLL 63
           N N+RL+ N PS++P SG SGI NER+L+LVFES+ WD+H LC  ASL R+  AIA R+L
Sbjct: 13  NTNRRLKFNQPSRLPNSGKSGIENERVLVLVFESISWDIHTLCTIASLSRRFCAIARRIL 72

Query: 64  WRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQ 123
           WR+LC  RAP M+  L+   P+GRI+GGWHALAKLMF C G ESTR F +S+ +  HF  
Sbjct: 73  WRRLCVNRAPGMVAALSGEDPSGRIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFAC 132

Query: 124 ASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIR 183
            SRFSKTSGR FL K CR DLLY+SDPCEH     ++ LG+FRGVFR F++S TR CL+R
Sbjct: 133 ESRFSKTSGRFFLPKNCRRDLLYMSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVR 192

Query: 184 RRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP 243
           R+  LEE+V+CPYCG RVWSMTAARLVPKSAARRLGS +GGLE+FVC+NGHLHG+CWL+P
Sbjct: 193 RQAALEEKVRCPYCGGRVWSMTAARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIP 252

Query: 244 LSS 246
           LSS
Sbjct: 253 LSS 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412596|ref|NP_567137.1| EID1-like F-box protein 3 [Arabidopsis thaliana] gi|75163822|sp|Q93ZT5.1|EDL3_ARATH RecName: Full=EID1-like F-box protein 3 gi|15810465|gb|AAL07120.1| unknown protein [Arabidopsis thaliana] gi|56744224|gb|AAW28552.1| At3g63060 [Arabidopsis thaliana] gi|332646909|gb|AEE80430.1| EID1-like F-box protein 3 [Arabidopsis thaliana]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 160/243 (65%), Positives = 193/243 (79%)

Query: 4   NANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLL 63
           N N+RL+ N PS++P SG SGI NER+L+LVFES+ WD+H LC  ASL R+  AIA R+L
Sbjct: 13  NTNRRLKFNQPSRLPNSGKSGIENERVLVLVFESISWDIHTLCTIASLSRRFCAIARRIL 72

Query: 64  WRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQ 123
           WR+LC  RAP M+  L+   P+GRI+GGWHALAKLMF C G ESTR F +S+ +  HF  
Sbjct: 73  WRRLCVNRAPGMVAALSGEDPSGRIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFAC 132

Query: 124 ASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIR 183
            SRFSKTSGR FL K CR DLLY+SDPCEH     ++ LG+FRGVFR F++S TR CL+R
Sbjct: 133 ESRFSKTSGRFFLPKNCRRDLLYMSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVR 192

Query: 184 RRVELEERVKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP 243
           R+  LEE+V+CPYCG RVWSMTAARLVPKSAARRLGS +GGLE+FVC+NGHLHG+CWL+P
Sbjct: 193 RQAALEEKVRCPYCGGRVWSMTAARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIP 252

Query: 244 LSS 246
           LSS
Sbjct: 253 LSS 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414880100|tpg|DAA57231.1| TPA: hypothetical protein ZEAMMB73_314095 [Zea mays]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/248 (56%), Positives = 180/248 (72%), Gaps = 10/248 (4%)

Query: 22  DSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLAN 81
           ++GI +E +L LVF  + +D   LC  + + R+LRA+AER+LWR+LC  RAPRM+ +LA 
Sbjct: 118 NTGILDENVLALVFRYLNFDPKALCTVSCVSRRLRAVAERVLWRELCVSRAPRMVASLAG 177

Query: 82  G-APNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKC 140
           G AP GR+ GGW ALAKL+  CCG         + A   HF   SRFSKTSGRSFL+++C
Sbjct: 178 GGAPPGRVVGGWPALAKLLLFCCG-------AAAAAVRGHFTGVSRFSKTSGRSFLSRRC 230

Query: 141 RGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGAR 200
           RGDLLYVSDPCEH +   +DD+G +RGVFRGF +S TRACL+ RR  LE RV+CPYCGAR
Sbjct: 231 RGDLLYVSDPCEHAVHGADDDVGAYRGVFRGFTRSRTRACLVGRRAPLETRVRCPYCGAR 290

Query: 201 VWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLSSEEDACDEDDDEDGE 260
           VWSM AA + P+SA RRLG+H+G L+Y+VC++GHLHG+CWL  L+S +   D D D + +
Sbjct: 291 VWSMVAAGMAPRSACRRLGAHEGRLQYYVCVSGHLHGNCWLARLTSSD--ADRDADSEDD 348

Query: 261 DGEDGGDD 268
              +GGDD
Sbjct: 349 ASTEGGDD 356

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357131159|ref|XP_003567208.1| PREDICTED: EID1-like F-box protein 3-like [Brachypodium distachyon]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 171/231 (74%), Gaps = 10/231 (4%)

Query: 22  DSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETL-- 79
           ++GI +E++L LVF S+ WD   +C  AS+ R+LRA+AER+LWR+LC  RAPRM+ +L  
Sbjct: 38  NTGILDEQVLSLVFRSINWDPQAVCTAASVSRRLRAVAERVLWRELCVSRAPRMVASLTA 97

Query: 80  -----ANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRS 134
                A  AP GR+ GGW ALAKL+  CCG   +    V  A P H  + SRFSKTSGRS
Sbjct: 98  PGAGVAPTAPPGRVGGGWPALAKLLSFCCGAAVSAGVPV--AVPGHLTRVSRFSKTSGRS 155

Query: 135 FLTKKCRGDLLYVSDPCEHPM-GNKEDDLGIFRGVFRGFLKSTTRACLIRRRVELEERVK 193
           FL ++CRGDLLYVSDPCEH + G  ++D+G +RGVFR F++S TRACL+ R   L+ RV+
Sbjct: 156 FLARRCRGDLLYVSDPCEHAVAGPGDEDVGAYRGVFRWFMRSRTRACLLGRNAALDPRVR 215

Query: 194 CPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPL 244
           CPYCGARVW+M AARLVP+SA RR+GS + GLEY+VC++GH+HGSCWL  L
Sbjct: 216 CPYCGARVWNMVAARLVPRSAWRRMGSREAGLEYYVCVSGHVHGSCWLAHL 266

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2099227	272	EDL3 "EID1-like 3" [Arabidopsi	0.820	0.893	0.633	1.3e-84
TAIR|locus:2180907	293	EDL1 "AT5G15440" [Arabidopsis	0.746	0.754	0.427	7.7e-48
TAIR|locus:2175668	249	EDL2 "AT5G39360" [Arabidopsis	0.743	0.883	0.408	1.1e-46
TAIR|locus:2133259	336	EID1 "EMPFINDLICHER IM DUNKELR	0.429	0.377	0.271	1.5e-06

TAIR|locus:2099227 EDL3 "EID1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 154/243 (63%), Positives = 185/243 (76%)

Query:     4 NANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLL 63
             N N+RL+ N PS++P SG SGI NER+L+LVFES+ WD+H LC  ASL R+  AIA R+L
Sbjct:    13 NTNRRLKFNQPSRLPNSGKSGIENERVLVLVFESISWDIHTLCTIASLSRRFCAIARRIL 72

Query:    64 WRKLCECRAPRMIETLANGAPNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQ 123
             WR+LC  RAP M+  L+   P+GRI+GGWHALAKLMF C G ESTR F +S+ +  HF  
Sbjct:    73 WRRLCVNRAPGMVAALSGEDPSGRIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFAC 132

Query:   124 ASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIX 183
              SRFSKTSGR FL K CR DLLY+SDPCEH     ++ LG+FRGVFR F++S TR CL+ 
Sbjct:   133 ESRFSKTSGRFFLPKNCRRDLLYMSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVR 192

Query:   184 XXXXXXXXXKCPYCGARVWSMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVP 243
                      +CPYCG RVWSMTAARLVPKSAARRLGS +GGLE+FVC+NGHLHG+CWL+P
Sbjct:   193 RQAALEEKVRCPYCGGRVWSMTAARLVPKSAARRLGSREGGLEFFVCVNGHLHGTCWLIP 252

Query:   244 LSS 246
             LSS
Sbjct:   253 LSS 255

GO:0005634 "nucleus" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2180907 EDL1 "AT5G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 95/222 (42%), Positives = 136/222 (61%)

Query:    24 GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGA 83
             G  NE +LLLVF+ + W+  ++   + + R     A+R+LW++ C+ RAP+M+  L +  
Sbjct:    20 GHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSG 79

Query:    84 PNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGD 143
              +  I+G W AL KL+ +C GC     F  S   P HFV  +RFS+T GRS L  +CR D
Sbjct:    80 SHC-IDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRTRFSRTLGRSLLPPQCRTD 138

Query:   144 LLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIXXXXXXXXXXKCPYCGARVWS 203
             +LYV DPCEH    +E D+G+FRG+F+ F  S  R  +I           CPYC A++WS
Sbjct:   139 VLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPFHPSEVCPYCKAKLWS 198

Query:   204 MTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLS 245
             M  A+++P+SA  RL +++  +EYFVC+NGHL G C L PLS
Sbjct:   199 MLQAKIIPQSACIRLEAYEDCIEYFVCLNGHLLGICTLAPLS 240

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175668 EDL2 "AT5G39360" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/223 (40%), Positives = 139/223 (62%)

Query:    24 GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANGA 83
             G  +E +L L+ + + W+ +++   + + +    +A+RLLW++ C  RAP+M+  L +  
Sbjct:    20 GHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDLQSSG 79

Query:    84 PNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCR-G 142
              +  ++G W AL KL+ +C G      F   + S  HFV  +RFS+TSGRSFL  +CR  
Sbjct:    80 SHS-VDGSWRALGKLLIYCSGSSKGGLFNDVQIS-GHFVHRTRFSRTSGRSFLPPQCRTD 137

Query:   143 DLLYVSDPCEHPMGNKEDDLGIFRGVFRGFLKSTTRACLIXXXXXXXXXXKCPYCGARVW 202
             D+LYVSDPCEH    ++ DLG FRG+F+ F  S  R  LI           CPYC A++W
Sbjct:   138 DILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKGTPFHPTEVCPYCKAKLW 197

Query:   203 SMTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWLVPLS 245
             SM  A+++P+SA+ RLG+++  +EY+VC+NGH+ G C L+PLS
Sbjct:   198 SMLQAKMIPQSASCRLGAYEDSIEYYVCLNGHMLGVCTLLPLS 240

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2133259 EID1 "EMPFINDLICHER IM DUNKELROTEN LICHT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 38/140 (27%), Positives = 63/140 (45%)

Query:   112 KVSKASPAHFVQAS-RFSKTSGRSFLTKKCRGDLLYVSD-P-CEHPMGNKEDDLGIFRGV 168
             K+ ++  +H        S+  G   L  + RGD LY+ + P C H +  K + + +FRGV
Sbjct:   201 KICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYICNWPGCIH-VEEKRNYM-LFRGV 258

Query:   169 FRGFLKSTTRACLIXXXXXXXXXXKCPYCGA-RVWSMTAARLVPKSAARRLGSHDGG--- 224
             F+ F +S     +           KC +C     W + ++  +     R  G HD G   
Sbjct:   259 FKDFKRSRVWRTINDGNRSKTSGLKCAFCLCDETWDLHSSFCL----RRVFGFHDDGEPV 314

Query:   225 LEYFVCINGHLHGSCWLVPL 244
             +  +VC NGH+ G+   +PL
Sbjct:   315 VRAYVCENGHVSGAWTALPL 334

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=RCA;IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZT5	EDL3_ARATH	No assigned EC number	0.6584	0.8209	0.8933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	99.86
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.79
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.32
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.24
KOG2997	366	consensus F-box protein FBX9 [General function pre	98.19
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	86.74

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1e-23  Score=201.11  Aligned_cols=243  Identities=32%  Similarity=0.379  Sum_probs=224.2

Q ss_pred             CCcCcccCCCCCCCCCCcCCCCccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHHHHhHHHHHHhhhchhHHHhhcC
Q 022473            3 GNANKRLRPNPPSQVPESGDSGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWRKLCECRAPRMIETLANG   82 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~larrvLWRe~C~~raP~mv~dL~~~   82 (296)
                      +|.+.+|.++++++.|..+..|+-.+.++...+.+..|+-.-...++=.-.++...++...|+..|+.+.|.|++.+...
T Consensus        12 ~~v~l~l~~~~~g~~~~~s~~~~~a~k~~~~~d~~~~~~~~~~~~I~~l~~~~~~~~~~~~~~~~~v~~v~gvv~~~~~~   91 (355)
T KOG1571|consen   12 TNVALRLLFRQYGRLPRVSKVGKEAEKVLVLVDLKSSWDIAPEKKIPYLVIRGCAIARKETLRSLCVSNVPGVVQALTLE   91 (355)
T ss_pred             hHHHHHhhhhhcccchhhHHHhhhccceecchhhhhhhhhccccchHHHHHhhcccccccchHHhhcccCCceEEEeeec
Confidence            46788999999999999998999999999999999999999888888888999999999999999999999999999998


Q ss_pred             CCCCCCCCchhHhHHHhhccCCCCCCCCcccccCCCCceeeccccccccCCcccccccCCceeeecCCCCCCCCCCCCce
Q 022473           83 APNGRINGGWHALAKLMFHCCGCESTRNFKVSKASPAHFVQASRFSKTSGRSFLTKKCRGDLLYVSDPCEHPMGNKEDDL  162 (296)
Q Consensus        83 ~~~~~i~GgW~AL~KLl~~C~G~~~~~~F~~s~~~pgHf~~~srfSRtsG~sfL~~rcR~D~LYVsDpCeH~~~ge~~d~  162 (296)
                      .+-.+.+++|...++++|+|.|.....-|..+++ .| |+...++|+++|.-+|+-.++.|.+|-|+||+|.+.+-....
T Consensus        92 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~q~-~~-~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s~~~~~~~~~s  169 (355)
T KOG1571|consen   92 EPKGRRDGGGHWNANSKIFHEGGNEVPFFLRSQT-TG-FACEVRVSKTLGRLFLPLNVVYDLFEPSDPCSLVDVGGGYHS  169 (355)
T ss_pred             cceeeeccceeeccceeeccCCCcccceeeccCC-cc-eeeeeeeecceeeeeecceeeeccccccCcceeeeccccccc
Confidence            7778888999999999999999988765655333 34 888999999999999999999999999999999998888899


Q ss_pred             eeeeeeccccchhhHHHHHhhccccccccccCCCCCcccch-hhhcccccccccccccccCCceeEEEeecCceeeeeee
Q 022473          163 GIFRGVFRGFLKSTTRACLIRRRVELEERVKCPYCGARVWS-MTAARLVPKSAARRLGSHDGGLEYFVCINGHLHGSCWL  241 (296)
Q Consensus       163 glfRGVFk~F~~Srvr~~Li~~~~~l~~~~~CpyC~ar~Ws-m~~A~~lp~sa~rrlG~~edgveyyVC~NGHv~G~ctl  241 (296)
                      |+++|.|+.++++..   |-.....|.+.++|+||+-++|+ |..+..+++|+..+|++.+++...++|+|+|++|.+|.
T Consensus       170 g~~~~~~~~~~~~l~---~~~~~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~~~~~~~~  246 (355)
T KOG1571|consen  170 GVRRGGFRETERVLP---LGTRLTALGELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGDLSFFVKVNGMVFGTLGV  246 (355)
T ss_pred             ceeeecccceEEeec---cccceeeeehheecCCCceEecCCccCcceeeccchhhHHHhhccceeeeeecceeeeeeeE
Confidence            999999999998855   66788899999999999999999 99999999999999999999999999999999999999


Q ss_pred             eecCCCccc
Q 022473          242 VPLSSEEDA  250 (296)
Q Consensus       242 ~PLs~se~~  250 (296)
                      ++||.-+.+
T Consensus       247 ills~~~~d  255 (355)
T KOG1571|consen  247 ILLSFIVKD  255 (355)
T ss_pred             EeehHHHHH
Confidence            999987644

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.79  E-value=3e-09  Score=72.95  Aligned_cols=44  Identities=32%  Similarity=0.502  Sum_probs=38.3

Q ss_pred             ccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHHHHh
Q 022473           25 IFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKLCEC   70 (296)
Q Consensus        25 ~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~C~~   70 (296)
                      .||+||+..||..|+  |++++++++|||+|+.++. +.+||.+|.+
T Consensus         3 ~LP~Eil~~If~~L~--~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r   47 (47)
T PF12937_consen    3 SLPDEILLEIFSYLD--PRDLLRLSLVCRRWRRIANDNSLWRRLCLR   47 (47)
T ss_dssp             CS-HHHHHHHHTTS---HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred             HhHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence            699999999999996  9999999999999999997 5999999864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.32  E-value=9.4e-07  Score=59.86  Aligned_cols=43  Identities=16%  Similarity=0.343  Sum_probs=36.8

Q ss_pred             ccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHHHH
Q 022473           25 IFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKLCE   69 (296)
Q Consensus        25 ~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~C~   69 (296)
                      .||+|++.+||.+|+  |.+++++++|||+|+.+++ ..+|+..|.
T Consensus         5 ~LP~~il~~Il~~l~--~~~~~~l~~vsk~~~~~~~~~~~~~~~~r   48 (48)
T PF00646_consen    5 DLPDEILQEILSYLD--PKDLLRLSLVSKRWRSLVDSPRLWKKIIR   48 (48)
T ss_dssp             HS-HHHHHHHHHTS---HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred             HCCHHHHHHHHHHCc--HHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence            489999999999999  9999999999999999999 699998873

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.24  E-value=1.2e-06  Score=56.51  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=36.3

Q ss_pred             cchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHH
Q 022473           26 FNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRK   66 (296)
Q Consensus        26 LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe   66 (296)
                      |++|++..||.+|+  |++++++++|||+|+.+++ ..+|++
T Consensus         1 lP~~ll~~I~~~l~--~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLP--PKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            68999999999998  9999999999999999999 688875

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=98.19  E-value=1.3e-06  Score=84.66  Aligned_cols=72  Identities=21%  Similarity=0.296  Sum_probs=60.8

Q ss_pred             CccchHHHHHHHHHcC---CChHHHHHHhhccHHHHHHHH-HHhHHHHHHhhhchhHHHhhcCCCCCCCCCchhHh
Q 022473           24 GIFNERILLLVFESVG---WDLHMLCLTASLDRKLRAIAE-RLLWRKLCECRAPRMIETLANGAPNGRINGGWHAL   95 (296)
Q Consensus        24 g~LsEdVLllVF~~Ln---wdPr~lar~ACVCrkfr~lar-rvLWRe~C~~raP~mv~dL~~~~~~~~i~GgW~AL   95 (296)
                      ..||+|||+.||+.+=   -|-|.|.++|||||.|...+| +-+||.+|.+.|-+|+-.|-.--...-..+.|..+
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~M  183 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREM  183 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHH
Confidence            6899999999999987   233999999999999999999 79999999999999998886643224457889853

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.74  E-value=0.43  Score=47.58  Aligned_cols=41  Identities=20%  Similarity=0.374  Sum_probs=37.5

Q ss_pred             CccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHH
Q 022473           24 GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRK   66 (296)
Q Consensus        24 g~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe   66 (296)
                      -.|+|+|++.||+-|-  -.+|-+++-||+||-.+++ .-+|-.
T Consensus        99 ~slpDEill~IFs~L~--kk~LL~~~~VC~Rfyr~~~de~lW~~  140 (419)
T KOG2120|consen   99 DSLPDEILLGIFSCLC--KKELLKVSGVCKRFYRLASDESLWQT  140 (419)
T ss_pred             ccCCHHHHHHHHHhcc--HHHHHHHHHHHHHHhhccccccceee
Confidence            5689999999999999  8999999999999999999 488854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.56
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.36
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.27
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.13
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.95
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.48
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.23
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.24

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.56  E-value=2.2e-08  Score=68.67  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=37.7

Q ss_pred             CCccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHH
Q 022473           23 SGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKL   67 (296)
Q Consensus        23 ~g~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~   67 (296)
                      -..|++|||..||.+|.  |++++++++|||+|+.++. +.+||.+
T Consensus         9 ~~~LP~eil~~I~~~L~--~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             CCSSCHHHHHHHHTTSC--GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             HHHCCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            36799999999999998  9999999999999999999 6899864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.36  E-value=3e-07  Score=86.39  Aligned_cols=47  Identities=19%  Similarity=0.321  Sum_probs=44.4

Q ss_pred             ccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHHHHhhhc
Q 022473           25 IFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKLCECRAP   73 (296)
Q Consensus        25 ~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~C~~raP   73 (296)
                      .||+||++.||+.|+  |++||++++|||.|+.+|+ +.|||.+|.+..|
T Consensus         7 ~LP~ei~l~IlsfL~--p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~   54 (312)
T 3l2o_B            7 RLPIDVQLYILSFLS--PHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP   54 (312)
T ss_dssp             HSCHHHHHHHHHTSC--HHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred             hCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence            589999999999999  9999999999999999999 7999999997655

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.27  E-value=9.4e-07  Score=81.72  Aligned_cols=69  Identities=14%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             CCccchHHHHHHHHHcCCChHHHH-HHhhccHHHHHHHH-HHhHHHHHHhhhchhHHHhhcCCCCCCCCCchhHhHHHh
Q 022473           23 SGIFNERILLLVFESVGWDLHMLC-LTASLDRKLRAIAE-RLLWRKLCECRAPRMIETLANGAPNGRINGGWHALAKLM   99 (296)
Q Consensus        23 ~g~LsEdVLllVF~~LnwdPr~la-r~ACVCrkfr~lar-rvLWRe~C~~raP~mv~dL~~~~~~~~i~GgW~AL~KLl   99 (296)
                      -..|++|||.+||.+|.  |+.|+ +.+||||+|++|+. +.+||..|..+.-      ............|..+...-
T Consensus        51 ~~~LP~ell~~Il~~Lp--~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~------~~~~~~~~~~~~Wk~~y~~~  121 (297)
T 2e31_A           51 LAELPEPLLLRVLAELP--ATELVQACRLVCLRWKELVDGAPLWLLKCQQEGL------VPEGSADEERDHWQQFYFLS  121 (297)
T ss_dssp             TTSSCHHHHHHHHHTSC--HHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTC------CCC-----CCSCHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCC--HHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCc------ccccccCCCCCChhhhhehe
Confidence            46799999999999998  99999 99999999999999 7999999998721      11100011355699887543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.13  E-value=1.3e-06  Score=76.67  Aligned_cols=48  Identities=19%  Similarity=0.335  Sum_probs=44.3

Q ss_pred             CccchH----HHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHHHHhhhc
Q 022473           24 GIFNER----ILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKLCECRAP   73 (296)
Q Consensus        24 g~LsEd----VLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~C~~raP   73 (296)
                      ..||++    |++.||..|.  |+.|+++++|||+|+.++. +.|||.+|.+.++
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~--~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~   64 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLD--AKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCC--HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHCCcchHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence            358888    9999999998  9999999999999999999 5999999998864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.00  E-value=3.9e-06  Score=73.16  Aligned_cols=46  Identities=17%  Similarity=0.268  Sum_probs=42.2

Q ss_pred             CccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH--HHhHHHHHHhh
Q 022473           24 GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE--RLLWRKLCECR   71 (296)
Q Consensus        24 g~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar--rvLWRe~C~~r   71 (296)
                      ..||++|++.||..|.  |+.|++++.|||+|+.++.  +.+||++|.+.
T Consensus        16 ~~lp~~~~~~i~~~l~--~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~   63 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQ--FEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   63 (464)
T ss_dssp             HHSCHHHHHHHHTTSC--HHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence            4699999999999996  9999999999999999998  59999999644

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.95  E-value=4.8e-06  Score=72.93  Aligned_cols=48  Identities=27%  Similarity=0.417  Sum_probs=44.2

Q ss_pred             CCccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHHHHhhh
Q 022473           23 SGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKLCECRA   72 (296)
Q Consensus        23 ~g~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~C~~ra   72 (296)
                      -..||++++..||..|.  |++|+++++|||+|+.++. +.+||.+|.+..
T Consensus        19 ~~~lp~e~~~~i~~~l~--~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~   67 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLE--PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG   67 (445)
T ss_dssp             TTSSCHHHHHHHHTTSC--HHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred             hHHCCHHHHHHHHHhCC--HHHHHHHHHHhHHHHhhcCchhHhhhheeecc
Confidence            36799999999999997  9999999999999999999 689999998664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.48  E-value=0.00072  Score=57.64  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=38.3

Q ss_pred             CCccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHHH
Q 022473           23 SGIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKLC   68 (296)
Q Consensus        23 ~g~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~C   68 (296)
                      -..||+|||..||++|.  ++++.+++.|||+|+.++. +.+|+.+-
T Consensus         9 ~~~LP~eil~~If~~L~--~~d~~~~~~vc~~W~~~~~~~~~~~~l~   53 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLWQTLD   53 (336)
T ss_dssp             SSSSCHHHHHHHHTTSC--HHHHHHTTSSCHHHHHHHTCSTTSSEEE
T ss_pred             hhhCCHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHhcCchhheeec
Confidence            36799999999999998  9999999999999999986 56777543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.23  E-value=0.012  Score=53.85  Aligned_cols=40  Identities=23%  Similarity=0.092  Sum_probs=32.2

Q ss_pred             CccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHHHHhHH
Q 022473           24 GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAERLLWR   65 (296)
Q Consensus        24 g~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~larrvLWR   65 (296)
                      ..||+|||..||++|. +++++++++.|||+|+.+ ....|+
T Consensus         7 ~~LPdevL~~If~~L~-~~~d~~~~s~vck~W~~~-~~~~~~   46 (594)
T 2p1m_B            7 LSFPEEVLEHVFSFIQ-LDKDRNSVSLVCKSWYEI-ERWCRR   46 (594)
T ss_dssp             ---CHHHHHHHHHTCC-CHHHHHHHHTSCHHHHHH-HHHHCC
T ss_pred             hhCCHHHHHHHHhhcC-CchhHHHHHHHHHHHHHh-hhhhce
Confidence            4699999999999997 589999999999999998 344454

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.24  E-value=0.021  Score=52.33  Aligned_cols=34  Identities=12%  Similarity=0.014  Sum_probs=30.9

Q ss_pred             ccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHH
Q 022473           25 IFNERILLLVFESVGWDLHMLCLTASLDRKLRAIA   59 (296)
Q Consensus        25 ~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~la   59 (296)
                      .||||||..||.+|. +++++++++.|||+|+.+.
T Consensus        15 ~LPdeil~~I~~~L~-~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           15 ATVDDVIEQVMTYIT-DPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCGGGTHHHHHTTCC-CHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHhcC-CHHHHHHHHHHhHHHHHhh
Confidence            599999999999993 3999999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.93
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.58
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.45

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.2e-10  Score=84.04  Aligned_cols=72  Identities=22%  Similarity=0.307  Sum_probs=55.5

Q ss_pred             CccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHHHHhhhchhHHHhhc--CCCCCCCCCchhHhHH
Q 022473           24 GIFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKLCECRAPRMIETLAN--GAPNGRINGGWHALAK   97 (296)
Q Consensus        24 g~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~C~~raP~mv~dL~~--~~~~~~i~GgW~AL~K   97 (296)
                      ..||+||+..||..|.  |++|+++++|||+|+.++. +.+||.+|.+.++..-.....  ........+.|+.+.+
T Consensus        20 ~~LP~Eil~~Ils~Ld--~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~   94 (102)
T d2ovrb1          20 SLLPKELALYVLSFLE--PKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI   94 (102)
T ss_dssp             TSSCHHHHHHHHTTSC--HHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred             hhCCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHH
Confidence            5699999999999995  9999999999999999999 699999998876532111111  1112445678988765

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.6e-08  Score=77.28  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=41.7

Q ss_pred             cchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhHHHHHHhhhc
Q 022473           26 FNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLWRKLCECRAP   73 (296)
Q Consensus        26 LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLWRe~C~~raP   73 (296)
                      |.++|++.||+.|.  |++|+++|+|||+|+.++. +.+||.+|.+.+-
T Consensus        18 l~~EI~~~Ils~Ld--~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~   64 (118)
T d1p22a1          18 GLDHIAENILSYLD--AKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (118)
T ss_dssp             TCHHHHHHHHTTCC--HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhcc
Confidence            44699999999996  9999999999999999999 6999999987653

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=9.1e-09  Score=67.77  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             ccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH-HHhH
Q 022473           25 IFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE-RLLW   64 (296)
Q Consensus        25 ~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar-rvLW   64 (296)
                      .||+||+..||+.|+  |++++++++|||+|+.++. +.+|
T Consensus         3 ~LP~eil~~If~~L~--~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           3 SLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             SSCHHHHHHHHTTSC--GGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             cCCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCcccC
Confidence            699999999999998  9999999999999999998 5666

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=6.7e-08  Score=72.09  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=41.2

Q ss_pred             ccchHHHHHHHHHcCCChHHHHHHhhccHHHHHHHH--HHhHHHHHHhh
Q 022473           25 IFNERILLLVFESVGWDLHMLCLTASLDRKLRAIAE--RLLWRKLCECR   71 (296)
Q Consensus        25 ~LsEdVLllVF~~LnwdPr~lar~ACVCrkfr~lar--rvLWRe~C~~r   71 (296)
                      .||+||+..||+.|.  |++|+++++|||+|+.++.  +.+||.+|.+.
T Consensus         8 ~LP~Ell~~I~s~Ld--~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           8 SLPFEISLKIFNYLQ--FEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             HSCHHHHHHHHTTSC--HHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            589999999999996  9999999999999999886  48999999764