Citrus Sinensis ID: 022477


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
MNMEARVGVVVEGGQRALNTAHSSVVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFHHLS
cccHHHHHHHHccccEEEcccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccc
ccHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHcHcccHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccc
MNMEARVGVVVEGGQRALNTAHSSVVDASarkflqqpqqpqhnlsvpkrslnqHQAQIGTVQQLLAGGIagafsktctapLARLTILFQVQGMHsdlaalskpSILREASRIANEEGFRAFWKGNLVTIAhrlpyssvnfYCYEHYKNFLQSVLGldnhresasvnlgvhfvggglagmtaasatyplDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGatllgvgpsiAISFSVYESLRSFWqsyrpndptVMVSLACGslsgiasstgqsflndiqsqsffhhls
MNMEARVGVVveggqralnTAHSSVVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFHHLS
MNMEARVGVVVEGGQRALNTAHSSVVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFHHLS
********************************************************QIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIA*********************
***EARVGVVVEGGQRALNTAHSSVVDASARKFLQQPQQPQHNLSVPK*********IGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQG***********SILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFH***
MNMEARVGVVVEGGQRALNTAHSSVVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFHHLS
*NMEARVGVVVEGGQRALNTAHSSVVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFH***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MNMEARVGVVVEGGQRALNTAHSSVVDASARKFLQQPQQPQHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFHHLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query296 2.2.26 [Sep-21-2011]
Q54MZ4434 Mitochondrial substrate c yes no 0.773 0.527 0.404 3e-39
Q6NUK1477 Calcium-binding mitochond yes no 0.75 0.465 0.363 1e-34
Q7ZY36473 Calcium-binding mitochond N/A no 0.773 0.484 0.320 6e-34
Q5XHA0473 Calcium-binding mitochond yes no 0.773 0.484 0.324 1e-33
Q8C0K5332 Graves disease carrier pr yes no 0.689 0.614 0.380 2e-33
Q7T0U6473 Calcium-binding mitochond N/A no 0.773 0.484 0.320 2e-33
Q8BMD8475 Calcium-binding mitochond no no 0.743 0.463 0.351 8e-33
Q01888330 Graves disease carrier pr yes no 0.689 0.618 0.376 1e-32
A5PJZ1477 Calcium-binding mitochond no no 0.75 0.465 0.351 4e-32
P16260332 Graves disease carrier pr no no 0.689 0.614 0.371 4e-32
>sp|Q54MZ4|MCFB_DICDI Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1 Back     alignment and function desciption
 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 140/242 (57%), Gaps = 13/242 (5%)

Query: 41  QHNLSVPKRSLNQHQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAA- 99
           +H L    + +    A + + + LL+GG+AGA S+TCT+PL RL IL QV  M+ +  A 
Sbjct: 119 EHWLQYSTKPIVHAPADVPSWKLLLSGGVAGAVSRTCTSPLERLKILNQVGHMNLEQNAP 178

Query: 100 -LSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDN 158
                 I++    +   EGF  F+KGN   +    PYS++ F  YE YKNFL     L+N
Sbjct: 179 KYKGRGIIQSLKTMYTTEGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFL-----LNN 233

Query: 159 HRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREE 218
           + ++        FVGG  AG+T+   TYPLDL+R+RL  Q     Y GI  + + I REE
Sbjct: 234 NDQTHLTTYENLFVGGA-AGVTSLLCTYPLDLIRSRLTVQVFGNKYNGIADTCKMIIREE 292

Query: 219 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPND--PTVMVSLACGSLSGIAS 276
           G  GLYKGL A+ LGV P +AI+F+ YE+L+   +++ P D  PTV+ SL  G++SG  +
Sbjct: 293 GVAGLYKGLFASALGVAPYVAINFTTYENLK---KTFIPKDTTPTVVQSLTFGAISGATA 349

Query: 277 ST 278
            T
Sbjct: 350 QT 351




Calcium-dependent mitochondrial solute carrier. Mitochondrial solute carriers shuttle metabolites, nucleotides, and cofactors through the mitochondrial inner membrane.
Dictyostelium discoideum (taxid: 44689)
>sp|Q6NUK1|SCMC1_HUMAN Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2 Back     alignment and function description
>sp|Q7ZY36|SCM1A_XENLA Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-a PE=2 SV=2 Back     alignment and function description
>sp|Q5XHA0|SCMC1_XENTR Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1 Back     alignment and function description
>sp|Q8C0K5|GDC_MOUSE Graves disease carrier protein homolog OS=Mus musculus GN=Slc25a16 PE=2 SV=1 Back     alignment and function description
>sp|Q7T0U6|SCM1B_XENLA Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-b PE=2 SV=1 Back     alignment and function description
>sp|Q8BMD8|SCMC1_MOUSE Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1 Back     alignment and function description
>sp|Q01888|GDC_BOVIN Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1 Back     alignment and function description
>sp|A5PJZ1|SCMC1_BOVIN Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1 Back     alignment and function description
>sp|P16260|GDC_HUMAN Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query296
224140313346 predicted protein [Populus trichocarpa] 0.922 0.789 0.738 1e-120
449448592349 PREDICTED: mitochondrial substrate carri 0.905 0.767 0.767 1e-114
449516015349 PREDICTED: mitochondrial substrate carri 0.905 0.767 0.763 1e-113
224090807347 predicted protein [Populus trichocarpa] 0.925 0.789 0.735 1e-113
296086165277 unnamed protein product [Vitis vinifera] 0.898 0.960 0.738 1e-111
225440510336 PREDICTED: mitochondrial substrate carri 0.864 0.761 0.740 1e-110
225449356346 PREDICTED: mitochondrial substrate carri 0.935 0.800 0.713 1e-110
255577969363 Mitochondrial deoxynucleotide carrier, p 0.925 0.754 0.713 1e-108
22331775365 Mitochondrial substrate carrier family p 0.929 0.753 0.694 1e-106
449464462348 PREDICTED: mitochondrial substrate carri 0.935 0.795 0.690 1e-106
>gi|224140313|ref|XP_002323527.1| predicted protein [Populus trichocarpa] gi|222868157|gb|EEF05288.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/294 (73%), Positives = 247/294 (84%), Gaps = 21/294 (7%)

Query: 1   MNMEARVGVVVEGGQRALNTA--HSSVVDASARKFLQQ---PQQPQHNLSVPKRSLNQHQ 55
           MNMEARVGVV+EGGQRALN+A  H S+VDA ARKFLQQ    Q PQH+            
Sbjct: 1   MNMEARVGVVLEGGQRALNSASTHGSIVDAGARKFLQQHNNKQSPQHS------------ 48

Query: 56  AQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANE 115
            Q+GTVQQLLAGG+AGAFSKTCTAPLARLTILFQVQGMHSD+ ALSK SI +EASR+ NE
Sbjct: 49  -QLGTVQQLLAGGVAGAFSKTCTAPLARLTILFQVQGMHSDVTALSKASIWQEASRVINE 107

Query: 116 EGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGG 175
           EGFRAFWKGNLVTIAHRLPYSSV+FY YE YK+   ++LG++NHR + + +L VHF+GGG
Sbjct: 108 EGFRAFWKGNLVTIAHRLPYSSVSFYAYERYKS---AILGVENHRVNGTADLAVHFIGGG 164

Query: 176 LAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVG 235
           +AG+TAASATYPLDLVRTR+AAQR  +YY+GIWH+F TICREEGFLGLYKGLGATLLGVG
Sbjct: 165 MAGITAASATYPLDLVRTRIAAQRNTMYYRGIWHAFHTICREEGFLGLYKGLGATLLGVG 224

Query: 236 PSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQ 289
           PSIAISFSVYESLRSFW S RPND T+MVSLACGSLSGIASST    L+ ++ +
Sbjct: 225 PSIAISFSVYESLRSFWHSKRPNDSTIMVSLACGSLSGIASSTATFPLDLVRRR 278




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448592|ref|XP_004142050.1| PREDICTED: mitochondrial substrate carrier family protein B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516015|ref|XP_004165043.1| PREDICTED: mitochondrial substrate carrier family protein B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224090807|ref|XP_002309090.1| predicted protein [Populus trichocarpa] gi|222855066|gb|EEE92613.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296086165|emb|CBI31606.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440510|ref|XP_002272651.1| PREDICTED: mitochondrial substrate carrier family protein B [Vitis vinifera] gi|297740295|emb|CBI30477.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225449356|ref|XP_002282149.1| PREDICTED: mitochondrial substrate carrier family protein B isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577969|ref|XP_002529856.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] gi|223530632|gb|EEF32506.1| Mitochondrial deoxynucleotide carrier, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|22331775|ref|NP_190962.2| Mitochondrial substrate carrier family protein [Arabidopsis thaliana] gi|17064804|gb|AAL32556.1| putative protein [Arabidopsis thaliana] gi|20259828|gb|AAM13261.1| putative protein [Arabidopsis thaliana] gi|332645641|gb|AEE79162.1| Mitochondrial substrate carrier family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449464462|ref|XP_004149948.1| PREDICTED: mitochondrial substrate carrier family protein B-like [Cucumis sativus] gi|449513191|ref|XP_004164257.1| PREDICTED: mitochondrial substrate carrier family protein B-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query296
TAIR|locus:2084460365 AT3G53940 [Arabidopsis thalian 0.932 0.756 0.693 2.1e-100
TAIR|locus:2078951332 AT3G55640 [Arabidopsis thalian 0.800 0.713 0.735 7.3e-91
TAIR|locus:2065598337 AT2G37890 [Arabidopsis thalian 0.756 0.664 0.691 5e-87
DICTYBASE|DDB_G0285599434 mcfB "calcium-dependent mitoch 0.773 0.527 0.404 1.9e-37
MGI|MGI:1920382332 Slc25a16 "solute carrier famil 0.685 0.611 0.382 1.1e-32
UNIPROTKB|Q6NUK1477 SLC25A24 "Calcium-binding mito 0.746 0.463 0.365 9.8e-32
UNIPROTKB|Q01888330 SLC25A16 "Graves disease carri 0.689 0.618 0.376 9.8e-32
UNIPROTKB|F1Q3E3332 SLC25A16 "Uncharacterized prot 0.689 0.614 0.371 3.3e-31
UNIPROTKB|P16260332 SLC25A16 "Graves disease carri 0.689 0.614 0.371 3.3e-31
UNIPROTKB|A6QPI5330 SLC25A16 "Solute carrier famil 0.689 0.618 0.371 6.9e-31
TAIR|locus:2084460 AT3G53940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 199/287 (69%), Positives = 229/287 (79%)

Query:     3 MEARVGVVVEGGQRALNTA-----HSSVVDASARKFLQQPQQPQHNLSVP------KRSL 51
             MEARVGVVVEGGQRALNTA     H++VVDA  RK LQQ  Q Q   S        K+SL
Sbjct:     1 MEARVGVVVEGGQRALNTATTTAVHNTVVDAGNRKLLQQQPQTQQTQSCHQHHQSNKQSL 60

Query:    52 NQHQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASR 111
             NQ Q   GTV++LLAGGIAGAFSKTCTAPLARLTILFQ+QGM S+ A LS P+I  EASR
Sbjct:    61 NQQQGHFGTVERLLAGGIAGAFSKTCTAPLARLTILFQIQGMQSEAAILSSPNIWHEASR 120

Query:   112 IANEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHF 171
             I  EEGFRAFWKGNLVT+AHRLPY +VNFY YE YK FL S   L +++ +A V++ VHF
Sbjct:   121 IVKEEGFRAFWKGNLVTVAHRLPYGAVNFYAYEEYKTFLHSNPVLQSYKGNAGVDISVHF 180

Query:   172 VGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATL 231
             V GGLAG+TAASATYPLDLVRTRL+AQR +IYY+G+ H+F+TICREEG LGLYKGLGATL
Sbjct:   181 VSGGLAGLTAASATYPLDLVRTRLSAQRNSIYYQGVGHAFRTICREEGILGLYKGLGATL 240

Query:   232 LGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASST 278
             LGVGPS+AISF+ YE+ ++FW S+RPND   +VSL CGSLSGI SST
Sbjct:   241 LGVGPSLAISFAAYETFKTFWLSHRPNDSNAVVSLGCGSLSGIVSST 287


GO:0005215 "transporter activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006839 "mitochondrial transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2078951 AT3G55640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065598 AT2G37890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285599 mcfB "calcium-dependent mitochondrial substrate carrier" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1920382 Slc25a16 "solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NUK1 SLC25A24 "Calcium-binding mitochondrial carrier protein SCaMC-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q01888 SLC25A16 "Graves disease carrier protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3E3 SLC25A16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P16260 SLC25A16 "Graves disease carrier protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPI5 SLC25A16 "Solute carrier family 25 (Mitochondrial carrier; Graves disease autoantigen), member 16" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 1e-28
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 8e-23
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 8e-19
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 7e-06
PTZ00168259 PTZ00168, PTZ00168, mitochondrial carrier protein; 2e-05
PTZ00168 259 PTZ00168, PTZ00168, mitochondrial carrier protein; 0.001
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
 Score =  105 bits (263), Expect = 1e-28
 Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 166 NLGVHFVGGGLAGMTAASATYPLDLVRTRL--AAQRQAIYYKGIWHSFQTICREEGFLGL 223
           +     + GG+AG  AA+ TYPLD+V+TRL  +A   +  YKGI   F+ I +EEG  GL
Sbjct: 4   SFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGL 63

Query: 224 YKGLGATLLGVGPSIAISFSVYESLRSFWQSY 255
           YKGL   LL V P+ AI F  YE+L+      
Sbjct: 64  YKGLLPNLLRVAPAAAIYFGTYETLKKLLLKK 95


Length = 96

>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 296
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0770353 consensus Predicted mitochondrial carrier protein 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0766297 consensus Predicted mitochondrial carrier protein 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0751 694 consensus Mitochondrial aspartate/glutamate carrie 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 100.0
KOG0769308 consensus Predicted mitochondrial carrier protein 100.0
KOG0765333 consensus Predicted mitochondrial carrier protein 100.0
KOG0036463 consensus Predicted mitochondrial carrier protein 100.0
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 100.0
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 100.0
KOG0767333 consensus Mitochondrial phosphate carrier protein 100.0
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 100.0
KOG0750304 consensus Mitochondrial solute carrier protein [En 100.0
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 99.98
KOG0036463 consensus Predicted mitochondrial carrier protein 99.98
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.97
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.97
KOG0766297 consensus Predicted mitochondrial carrier protein 99.97
KOG0765333 consensus Predicted mitochondrial carrier protein 99.97
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.97
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.96
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.96
KOG0770353 consensus Predicted mitochondrial carrier protein 99.96
KOG0769308 consensus Predicted mitochondrial carrier protein 99.94
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.91
KOG1519297 consensus Predicted mitochondrial carrier protein 99.86
KOG2745321 consensus Mitochondrial carrier protein [General f 99.85
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.8
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.71
KOG1519297 consensus Predicted mitochondrial carrier protein 99.64
KOG2745321 consensus Mitochondrial carrier protein [General f 99.33
KOG2954427 consensus Mitochondrial carrier protein [General f 99.3
KOG2954427 consensus Mitochondrial carrier protein [General f 98.52
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
Probab=100.00  E-value=1.2e-48  Score=337.36  Aligned_cols=229  Identities=42%  Similarity=0.692  Sum_probs=206.6

Q ss_pred             chHHHHHHHHHHHHhHhhhccchHHHHHHHHhcCCccccccCCCccHHHHHHHHHHhhCcccccccchhhhhcccccccc
Q 022477           59 GTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPYSSV  138 (296)
Q Consensus        59 ~~~~~~~~g~~ag~~~~~~~~Pld~vk~r~Q~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~  138 (296)
                      ..+..+++|++||+++..++.|+|++|+|+|++.+.  ....++.++++.++.|+++||++|||||-.++.++.+|+.++
T Consensus        26 ~~~~~llAGgvAGavsrt~~APLd~iKIlfQ~~~~~--~~~~k~~g~~~~~~~I~~eEG~~g~wkGn~~~~~r~~pY~av  103 (320)
T KOG0752|consen   26 TGAKSLLAGGVAGAVSRTVTAPLDRIKILFQVQVEP--SKTSKYPGVIQAFKSIYREEGLRGFWKGNGPAQIRIIPYGAV  103 (320)
T ss_pred             HHHHHHhcchHHHHHHHHhcCchhHceEEEEecccc--ccccccccHHHHHHHHHHHhchhhhhcCcccceeeeeecchh
Confidence            668899999999999999999999999999999864  234578889999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhhhcCCCCCcccccchhhHHHhHHHHHHhHhhhcccHHHHHHHHHhhhcCCccCCHHHHHHHHHHHh
Q 022477          139 NFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREE  218 (296)
Q Consensus       139 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~vktr~q~~~~~~~~~~~~~~~~~i~~~~  218 (296)
                      +|..||..|+......      .....+...++++|++||+++++++||+|++|+|+-.+.....|.++.+++++||++|
T Consensus       104 qf~aye~~k~~~~~~~------~~~~~~~~~~l~aGalAG~~a~~~tyPLDlvRtRLa~q~~~~~y~~l~~a~~~I~~~e  177 (320)
T KOG0752|consen  104 QFSAYEQYKKLVLGVD------PNGSLSPLVRLVAGALAGMTATLATYPLDLLRTRLAVQGELKVYRGLLHAFKTIYREE  177 (320)
T ss_pred             hhhHHHHhhhhhhccC------cccccchhHHHHHHHHHHHHHHHhcCcHHHhhhheeeecccccCCcHHHHHHHHHHhc
Confidence            9999999998643321      1115577899999999999999999999999999999887668999999999999999


Q ss_pred             chhhhhhchhhhHhhHHHHHHHHHHHHHHHHHH-HhccCC-CCchhHHHHHHHHHHHHHHhhhhchHHHHHhccccccc
Q 022477          219 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSF-WQSYRP-NDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSFFHHL  295 (296)
Q Consensus       219 G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~-~~~~~~-~~~~~~~~~~~g~~ag~~a~~~t~P~dvvkt~~~~~~~  295 (296)
                      |++|||||+.|++++.+|+.++.|..||.+|++ +.+..+ ++.+.+..++||++||.++.++|||||+||.|||...+
T Consensus       178 Gi~gfYrGl~ptllgi~Pyag~~F~~Yd~lk~~~~~~~~~~~~~~~~~~l~~GalAG~~aqti~yPlD~vRrrmQ~~~~  256 (320)
T KOG0752|consen  178 GIRGFYRGLGPTLLGIAPYAGINFFAYDTLKKWQYLKSSGNKELSNFERLLCGALAGAVAQTITYPLDTVRRRMQLGGL  256 (320)
T ss_pred             chhhhhcCcchhhheehhhhhhHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHhhhcccHHHHHHHHhccCc
Confidence            999999999999999999999999999999994 444433 46789999999999999999999999999999998764



>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 4e-24
2lck_A303 Structure Of The Mitochondrial Uncoupling Protein 2 8e-10
2lck_A 303 Structure Of The Mitochondrial Uncoupling Protein 2 1e-04
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure

Iteration: 1

Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 16/213 (7%) Query: 61 VQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSK-PSILREASRIANEEGFR 119 ++ LAGG+A A SKT AP+ R+ +L QVQ ++A + I+ RI E+GF Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67 Query: 120 AFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGM 179 +FW+GNL + P ++NF + YK G+D H++ G + GG AG Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG--GVDRHKQFWRYFAG-NLASGGAAGA 124 Query: 180 TAASATYPLDLVRTRL-------AAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLL 232 T+ YPLD RTRL AAQR+ + G+ + I + +G GLY+G ++ Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQRE---FTGLGNCITKIFKSDGLRGLYQGFNVSVQ 181 Query: 233 GVGPSIAISFSVYESLRSFWQSYRPNDPTVMVS 265 G+ A F VY++ + P + ++VS Sbjct: 182 GIIIYRAAYFGVYDTAKGMLPD--PKNVHIIVS 212
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 4e-84
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-42
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-09
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 8e-35
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 8e-33
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 6e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3hw5_A261 Polymerase acidic protein; avian influenza virus, 4e-04
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score =  253 bits (649), Expect = 4e-84
 Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 10/229 (4%)

Query: 55  QAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSK-PSILREASRIA 113
              +  ++  LAGG+A A SKT  AP+ R+ +L QVQ     ++A  +   I+    RI 
Sbjct: 2   DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61

Query: 114 NEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVG 173
            E+GF +FW+GNL  +    P  ++NF   + YK      LG  +  +        +   
Sbjct: 62  KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIF---LGGVDRHKQFWRYFAGNLAS 118

Query: 174 GGLAGMTAASATYPLDLVRTRLAAQ----RQAIYYKGIWHSFQTICREEGFLGLYKGLGA 229
           GG AG T+    YPLD  RTRLAA          + G+ +    I + +G  GLY+G   
Sbjct: 119 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 178

Query: 230 TLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASST 278
           ++ G+    A  F VY++ +       P +  ++VS          +  
Sbjct: 179 SVQGIIIYRAAYFGVYDTAKGMLP--DPKNVHIIVSWMIAQTVTAVAGL 225


>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3hw5_A Polymerase acidic protein; avian influenza virus, PA_N, AMP, phosphoprotein, hydrolase; HET: AMP; 1.81A {Influenza a virus} PDB: 3hw4_A* 3hw3_A* 3hw6_A 3ebj_A 2w69_A Length = 261 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query296
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-47  Score=338.03  Aligned_cols=233  Identities=27%  Similarity=0.469  Sum_probs=200.9

Q ss_pred             ccchHHHHHHHHHHHHhHhhhccchHHHHHHHHhcCCccc-cccCCCccHHHHHHHHHHhhCcccccccchhhhhccccc
Q 022477           57 QIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD-LAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLPY  135 (296)
Q Consensus        57 ~~~~~~~~~~g~~ag~~~~~~~~Pld~vk~r~Q~~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~  135 (296)
                      ..+.+..+++|++||+++.++++|+|+||+|+|++..... .....+++.++++++|+++||++|||||+.+++++.++.
T Consensus         4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~   83 (297)
T 1okc_A            4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT   83 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence            3456789999999999999999999999999999864321 123467899999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHhhhcCCCCCcccccchhhHHHhHHHHHHhHhhhcccHHHHHHHHHhhhc----CCccCCHHHHH
Q 022477          136 SSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHSF  211 (296)
Q Consensus       136 ~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~vktr~q~~~~----~~~~~~~~~~~  211 (296)
                      .+++|.+||.+|+.+.....   ...+...+....+++|++||++++++++|+|+||+|+|++..    ...|.++++++
T Consensus        84 ~~~~f~~ye~~k~~~~~~~~---~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~  160 (297)
T 1okc_A           84 QALNFAFKDKYKQIFLGGVD---RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI  160 (297)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccC---cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence            99999999999996543211   111111245678999999999999999999999999999743    34689999999


Q ss_pred             HHHHHHhchhhhhhchhhhHhhHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHhhhhchHHHHHhccc
Q 022477          212 QTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQSF  291 (296)
Q Consensus       212 ~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvkt~~~  291 (296)
                      ++|+++||++|||||+.++++|.+|+.+++|.+||.+|+.+.+..  +.+.+..+++|++||++++++++|+||||||+|
T Consensus       161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q  238 (297)
T 1okc_A          161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM  238 (297)
T ss_dssp             HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence            999999999999999999999999999999999999999886542  345778899999999999999999999999999


Q ss_pred             ccc
Q 022477          292 FHH  294 (296)
Q Consensus       292 ~~~  294 (296)
                      .+.
T Consensus       239 ~~~  241 (297)
T 1okc_A          239 MQS  241 (297)
T ss_dssp             TTT
T ss_pred             hcC
Confidence            763



>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 296
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 4e-23
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 1e-16
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
 Score = 94.4 bits (233), Expect = 4e-23
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 8/213 (3%)

Query: 55  QAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSK-PSILREASRIA 113
              +  ++  LAGG+A A SKT  AP+ R+ +L QVQ     ++A  +   I+    RI 
Sbjct: 1   DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60

Query: 114 NEEGFRAFWKGNLVTIAHRLPYSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVG 173
            E+GF +FW+GNL  +    P  ++NF   + YK      LG  +  +        +   
Sbjct: 61  KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIF---LGGVDRHKQFWRYFAGNLAS 117

Query: 174 GGLAGMTAASATYPLDLVRTRLAAQRQAIY----YKGIWHSFQTICREEGFLGLYKGLGA 229
           GG AG T+    YPLD  RTRLAA          + G+ +    I + +G  GLY+G   
Sbjct: 118 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 177

Query: 230 TLLGVGPSIAISFSVYESLRSFWQSYRPNDPTV 262
           ++ G+    A  F VY++ +      +     V
Sbjct: 178 SVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIV 210


>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query296
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
Probab=100.00  E-value=4.4e-43  Score=305.92  Aligned_cols=234  Identities=26%  Similarity=0.462  Sum_probs=206.4

Q ss_pred             cccchHHHHHHHHHHHHhHhhhccchHHHHHHHHhcCCccc-cccCCCccHHHHHHHHHHhhCcccccccchhhhhcccc
Q 022477           56 AQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD-LAALSKPSILREASRIANEEGFRAFWKGNLVTIAHRLP  134 (296)
Q Consensus        56 ~~~~~~~~~~~g~~ag~~~~~~~~Pld~vk~r~Q~~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~  134 (296)
                      ++.+++.++++|++||+++.+++||||+||+|+|++..... .....+++.++++++++++||+++||||+.+.+++..+
T Consensus         2 ~~~~~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~   81 (292)
T d1okca_           2 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP   81 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhc
Confidence            35678899999999999999999999999999999875432 23456789999999999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHhhhcCCCCCcccccchhhHHHhHHHHHHhHhhhcccHHHHHHHHHhhhc----CCccCCHHHH
Q 022477          135 YSSVNFYCYEHYKNFLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHS  210 (296)
Q Consensus       135 ~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~vktr~q~~~~----~~~~~~~~~~  210 (296)
                      ..+++|.+|+.+++.+.+....   ..+........+++|.+||+++.++++|+|++|+|+|.+..    ...|.+.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~  158 (292)
T d1okca_          82 TQALNFAFKDKYKQIFLGGVDR---HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNC  158 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCT---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHH
T ss_pred             ccchhHHHHHHHHHHHhccccc---ccccchhhhhhhhhhhhhhhhHHhhhhhhhhhheeeeccccccccccccccHHHH
Confidence            9999999999999998765432   12223345677899999999999999999999999999753    3467899999


Q ss_pred             HHHHHHHhchhhhhhchhhhHhhHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHhhhhchHHHHHhcc
Q 022477          211 FQTICREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTGQSFLNDIQSQS  290 (296)
Q Consensus       211 ~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ye~l~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvkt~~  290 (296)
                      ++.++++||+++||+|+.++++|.+|+.+++|..||.+|+.+.+..  .......+.++++++++++++|||+||||||+
T Consensus       159 ~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~  236 (292)
T d1okca_         159 ITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM  236 (292)
T ss_dssp             HHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhccccc--ccchHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            9999999999999999999999999999999999999999886653  34678889999999999999999999999999


Q ss_pred             cccc
Q 022477          291 FFHH  294 (296)
Q Consensus       291 ~~~~  294 (296)
                      |.++
T Consensus       237 q~~~  240 (292)
T d1okca_         237 MMQS  240 (292)
T ss_dssp             HTTT
T ss_pred             HhcC
Confidence            9765



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure