Citrus Sinensis ID: 022483

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MLLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Secondary Structure (PSIPRED)
ccccccccccccccccccEEccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccEEccccccccHHHHHHHcccccccccccEEEEEcccEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEccccEEEEEEccccccccccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccEEEEEEcccEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccEEccccEEEEEcccccccEEEEccEEEEcccccccEEEEEEEccHccccccccccccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
mllckpslslispctlpktltlkptkkpsltIINSIttnnerkpisAFEARVSLVFALASQTSSLSQRLLMDLATETakyvfpkrfesqNLEEALMavpdletvKFKVLSRRGQYEIREVESYFIAettmpgrtgfdlngasrSFNVLAEYLfgkntkretmemttpvitrktqsdgekmemttPVISKkledqdkwqmsfvmpskyganlplpkdpsvrikevpKKVVAVVAFSgfvtdedvKRRELKLRDALkgdrqfrvkegasvevaqynppftlpftrrNEIALEVERKEE
Flexible Loop (DISEMBL)
mllckpslslispctlpktltlkptkkpsltiinsittnnerkpiSAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEAlmavpdletvkfkvlsrrgqyeirEVESYFIAETTMPGRTGFDLNGASRSFNVLAEYlfgkntkretmemttpvitrktqsdgekmeMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVafsgfvtdedvkrrelklrdalkgdrqfrvkegasvevaqynppftlpftrrNEIALEVERKEE
Low Complexity Region (SEG)
MLLCKPSLSLIspctlpktltlkptkkpsltIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEvpkkvvavvaFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Disordered region (IsUnstruct)
*********LISPCTLPKTLTL******SLTIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGK*********************************************FV****************VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKG*RQFRVKEGASVEVAQYNPPFTLPFTR*************
Disordered Region (DISOPRED)
*************************************************ARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKM***TP**SK*LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK**
Disordered Region (DISEMBL)
MLLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Disordered Region (DISPRO)
*LLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSIT*****KPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q9SR77	309	Heme-binding-like protein	yes	no	0.851	0.815	0.735	1e-102
Q5ISC6	189	Heme-binding protein 1 OS	yes	no	0.570	0.894	0.288	2e-08
Q6NU05	190	Heme-binding protein 1 OS	N/A	no	0.415	0.647	0.264	9e-08
Q5ZMB2	189	Heme-binding protein 1 OS	yes	no	0.564	0.883	0.281	1e-07
Q9NRV9	189	Heme-binding protein 1 OS	yes	no	0.418	0.656	0.307	1e-07
Q6DJ66	190	Heme-binding protein 1 OS	yes	no	0.415	0.647	0.257	2e-07
Q9R257	190	Heme-binding protein 1 OS	yes	no	0.385	0.6	0.303	2e-06

>sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/253 (73%), Positives = 223/253 (88%), Gaps = 1/253 (0%)

Query: 45  ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQ-NLEEALMAVPDLET 103
           +SA E+RVSLV ALASQ SS+SQRLL DLA ETAKYVFPKRF+S  NLEEA M+VPDLET
Sbjct: 57  VSATESRVSLVLALASQASSVSQRLLADLAMETAKYVFPKRFDSSTNLEEAFMSVPDLET 116

Query: 104 VKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETME 163
           + F+VL R  +YEIR+VE YF+AET MPG TGFD  GAS+SFNVLAEYLFGKNT +E ME
Sbjct: 117 MNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYLFGKNTIKEKME 176

Query: 164 MTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKE 223
           MTTPV+TRK QS GEKMEMTTPVI+ K +DQ++W+MSFVMPSKYG+NLPLPKDPSV+I++
Sbjct: 177 MTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKYGSNLPLPKDPSVKIQQ 236

Query: 224 VPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTR 283
           VP+K+VAVVAFSG+VTDE+++RRE +LR AL+ D++FRV++G S EVAQYNPPFTLPF R
Sbjct: 237 VPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQYNPPFTLPFMR 296

Query: 284 RNEIALEVERKEE 296
           RNE++LEVE KE+
Sbjct: 297 RNEVSLEVENKED 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ISC6|HEBP1_PIG Heme-binding protein 1 OS=Sus scrofa GN=HEBP1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 25/194 (12%)

Query: 101 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASR-SFNVLAEYLFGK 155
           +ET  ++VLS+  +    YE R  E    A   M   T   ++ A R +   + +Y+ G 
Sbjct: 13  VETWPWQVLSKGDKQDISYEERACEGGKFATVEM---TDKPVDEALREAMPKVMKYVGGS 69

Query: 156 NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
           N K   M MT P+      SDG  +             Q K ++ F +P+++ +N P+P 
Sbjct: 70  NDKGIGMGMTVPISFAVFPSDGGSL-------------QKKLKVWFRIPNEFQSNPPVPS 116

Query: 216 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 275
           D S++I+E     V  + F G+  + D   R  +LR AL+G    R           Y+P
Sbjct: 117 DDSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSD---VYFCTGYDP 173

Query: 276 PFTLPFTRRNEIAL 289
           P   P+ RRNE+ L
Sbjct: 174 PMK-PYGRRNEVWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Sus scrofa (taxid: 9823)

>sp|Q6NU05|HEBP1_XENLA Heme-binding protein 1 OS=Xenopus laevis GN=hebp1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 17/140 (12%)

Query: 148 LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY 207
           L +Y+ G N K   M MT+PVI     S+ + ++    V+ +             +PS+Y
Sbjct: 62  LLKYVGGSNNKSAGMGMTSPVIINSYPSENDTLQPNVKVLLR-------------IPSQY 108

Query: 208 GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGAS 267
            A+ P+P D +++I++     +    F G+  + D      KLR  L  D  +       
Sbjct: 109 QADPPVPTDNTIQIEDRESVTLYSTQFGGYAKEADYVSHAAKLRSCLGPDISYHSD---Y 165

Query: 268 VEVAQYNPPFTLPFTRRNEI 287
                Y+PP   P+ RRNE+
Sbjct: 166 YMCCGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus laevis (taxid: 8355)

>sp|Q5ZMB2|HEBP1_CHICK Heme-binding protein 1 OS=Gallus gallus GN=HEBP1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 25/192 (13%)

Query: 101 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 156
           +ET  ++VLS+  +    YE RE E    A   + G+  FD      +  +L +Y+ G N
Sbjct: 13  VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEVTGKP-FDEASKEAALKLL-KYVGGSN 70

Query: 157 TKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
            K   M MT PV IT     DG                Q K ++   +P+++ A+ P P 
Sbjct: 71  DKGAGMGMTAPVSITAFPAEDGSL--------------QQKVKVYLRIPNQFQASPPCPS 116

Query: 216 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 275
           D S++I+E     +    F G+  + D      KL+ AL  +  +R           Y+P
Sbjct: 117 DESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYRKD---FYFCNGYDP 173

Query: 276 PFTLPFTRRNEI 287
           P   P+ RRNE+
Sbjct: 174 PMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Gallus gallus (taxid: 9031)

>sp|Q9NRV9|HEBP1_HUMAN Heme-binding protein 1 OS=Homo sapiens GN=HEBP1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 19/143 (13%)

Query: 148 LAEYLFGKNTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSK 206
           +A+Y  G N K   M MT P+        DG         + KKL      ++ F +P++
Sbjct: 62  VAKYAGGTNDKGIGMGMTVPISFAVFPNEDGS--------LQKKL------KVWFRIPNQ 107

Query: 207 YGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGA 266
           + ++ P P D SV+I+E     V  + F G+  + D   +  +LR AL+G   +R   G 
Sbjct: 108 FQSDPPAPSDKSVKIEEREGITVYSMQFGGYAKEADYVAQATRLRAALEGTATYR---GD 164

Query: 267 SVEVAQYNPPFTLPFTRRNEIAL 289
                 Y+PP   P+ RRNEI L
Sbjct: 165 IYFCTGYDPPMK-PYGRRNEIWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Homo sapiens (taxid: 9606)

>sp|Q6DJ66|HEBP1_XENTR Heme-binding protein 1 OS=Xenopus tropicalis GN=hebp1 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)

Query: 148 LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY 207
           L +Y+ G N K   M MT+PV+     ++ E ++    V+ +             +PS+Y
Sbjct: 62  LLKYVGGSNQKYAGMGMTSPVVITSYPAENETLQPNVKVLLR-------------IPSQY 108

Query: 208 GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGAS 267
            A+ P+P D ++ I++          F G+  + D      KLR  L  D  +       
Sbjct: 109 QADPPVPTDDTIHIEDRESVTFYSTQFGGYAKEADYVSHAAKLRSCLGPDISYHTDH--- 165

Query: 268 VEVAQYNPPFTLPFTRRNEI 287
                Y+PP   P+ RRNE+
Sbjct: 166 YMCCGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus tropicalis (taxid: 8364)

>sp|Q9R257|HEBP1_MOUSE Heme-binding protein 1 OS=Mus musculus GN=Hebp1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEVPKK 227
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 69  TNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 128

Query: 228 VVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
            V    F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 129 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 185

Query: 288 AL 289
            L
Sbjct: 186 WL 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
225440878	285	PREDICTED: heme-binding-like protein At3	0.881	0.915	0.796	1e-120
255575711	297	protein with unknown function [Ricinus c	0.979	0.976	0.772	1e-120
356572562	303	PREDICTED: heme-binding-like protein At3	0.983	0.960	0.719	1e-119
297740118	252	unnamed protein product [Vitis vinifera]	0.847	0.996	0.820	1e-118
147794498	252	hypothetical protein VITISV_021815 [Viti	0.847	0.996	0.816	1e-118
357511075	296	Heme-binding-like protein [Medicago trun	0.966	0.966	0.702	1e-115
356503813	304	PREDICTED: heme-binding-like protein At3	0.972	0.947	0.678	1e-112
449462962	305	PREDICTED: heme-binding-like protein At3	0.966	0.937	0.672	1e-110
297829544	317	soul heme-binding family protein [Arabid	0.885	0.826	0.729	1e-110
224140257	253	predicted protein [Populus trichocarpa]	0.837	0.980	0.732	1e-102

>gi|225440878|ref|XP_002282544.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/261 (79%), Positives = 238/261 (91%)

Query: 35  SITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEA 94
           S++++ +R+ +S FEARVSLV AL SQ SS+SQRLLMDLA+ET KY FP+RFES NLEEA
Sbjct: 24  SLSSSPQRRAMSGFEARVSLVLALVSQASSVSQRLLMDLASETTKYAFPRRFESSNLEEA 83

Query: 95  LMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFG 154
           LM+VPDLETVKFKVLSR+ QYEIREVE YFIAETTMPG+ GFD NG+S+SFNVLAEYLFG
Sbjct: 84  LMSVPDLETVKFKVLSRKDQYEIREVEPYFIAETTMPGKNGFDFNGSSQSFNVLAEYLFG 143

Query: 155 KNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
           KNT +E MEMTTPV TR+ QSDG+KMEMTTPVI+KKL+DQDKWQMSFVMP+KYGA+LPLP
Sbjct: 144 KNTTKERMEMTTPVFTRRDQSDGKKMEMTTPVITKKLQDQDKWQMSFVMPAKYGADLPLP 203

Query: 215 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
           KD SVRIKEVP+K+VAVVAFSGFVTDE+VK RE KLR AL+ D+QF+VKEGA VEVAQYN
Sbjct: 204 KDQSVRIKEVPRKIVAVVAFSGFVTDEEVKLRESKLRSALRNDKQFQVKEGAPVEVAQYN 263

Query: 275 PPFTLPFTRRNEIALEVERKE 295
           PPFTLPFTRRNE+ALEVERK+
Sbjct: 264 PPFTLPFTRRNEVALEVERKQ 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575711|ref|XP_002528755.1| protein with unknown function [Ricinus communis] gi|223531849|gb|EEF33667.1| protein with unknown function [Ricinus communis]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/303 (77%), Positives = 258/303 (85%), Gaps = 13/303 (4%)

Query: 1   MLLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNN-------ERKPISAFEARVS 53
           MLLC PS  +I      KTLT   T     TII S+ T+         +   SAFEARVS
Sbjct: 1   MLLCNPS-PMIQIQYRCKTLTASST-----TIIKSMVTDRTATSAQPRKATSSAFEARVS 54

Query: 54  LVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRG 113
           L+FALASQTS++SQRLL DLA ETAKYVFPKRF S+NLEEALMAVPDLETV++KVLSRR 
Sbjct: 55  LIFALASQTSNVSQRLLFDLANETAKYVFPKRFASRNLEEALMAVPDLETVEYKVLSRRD 114

Query: 114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 173
           QYEIREVE YFIAETTMPG+TGFDLNGAS+SFNVLAEYLFGKN  +E MEMTTPV TRK 
Sbjct: 115 QYEIREVEPYFIAETTMPGKTGFDLNGASQSFNVLAEYLFGKNVTKEKMEMTTPVFTRKV 174

Query: 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVA 233
           QSDGEKMEMTTPVI+KK+EDQDKWQMSFVMPSKYGA+LPLPKD +V+IKEVPKKVVAVVA
Sbjct: 175 QSDGEKMEMTTPVITKKVEDQDKWQMSFVMPSKYGADLPLPKDKTVKIKEVPKKVVAVVA 234

Query: 234 FSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 293
           FSGFVTDEDVK+RELKLR+ALK D  FRVK+GAS+EVAQYNPPFTLPFTRRNEIA+E+ER
Sbjct: 235 FSGFVTDEDVKQRELKLRNALKNDPLFRVKKGASMEVAQYNPPFTLPFTRRNEIAIEIER 294

Query: 294 KEE 296
           KEE
Sbjct: 295 KEE 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572562|ref|XP_003554437.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/299 (71%), Positives = 248/299 (82%), Gaps = 8/299 (2%)

Query: 3   LCKPSLSLISPCTLPKTLTLKPTKKPS-LTIINS------ITTNNERKPISAFEARVSLV 55
           +C PS SL     +   + +KP K  S L++ NS      I+++  R+ IS FE+R+SL+
Sbjct: 4   ICNPS-SLSRQPGIVAPIPVKPIKHSSNLSVTNSASSGERISSSTRRRTISPFESRISLI 62

Query: 56  FALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQY 115
           FALASQ +SLSQRLL D+A ETAKYVFPKRFES+NLEEALM+VPDLETV FKVLSR  QY
Sbjct: 63  FALASQANSLSQRLLADVAAETAKYVFPKRFESRNLEEALMSVPDLETVDFKVLSRMDQY 122

Query: 116 EIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQS 175
           EIREVE YF+AETTMPG++GFD NGASRSFN LAEYLFGKNT +E MEMTTPV T K QS
Sbjct: 123 EIREVEPYFVAETTMPGKSGFDFNGASRSFNALAEYLFGKNTTKEKMEMTTPVFTSKNQS 182

Query: 176 DGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFS 235
           DG KM+MTTPV++ K+EDQD W+MSFVMPSKYGANLPLPKD SVRIKEVP+K+VAVV+FS
Sbjct: 183 DGVKMDMTTPVLTTKMEDQDNWKMSFVMPSKYGANLPLPKDSSVRIKEVPRKIVAVVSFS 242

Query: 236 GFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 294
           GFV DE++K+RELKLRDALK D QF +KEG SVEVAQYNPPFTLPF RRNEIALEVE K
Sbjct: 243 GFVNDEEIKQRELKLRDALKSDSQFEIKEGTSVEVAQYNPPFTLPFQRRNEIALEVEWK 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740118|emb|CBI30300.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/251 (82%), Positives = 230/251 (91%)

Query: 45  ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETV 104
           +S FEARVSLV AL SQ SS+SQRLLMDLA+ET KY FP+RFES NLEEALM+VPDLETV
Sbjct: 1   MSGFEARVSLVLALVSQASSVSQRLLMDLASETTKYAFPRRFESSNLEEALMSVPDLETV 60

Query: 105 KFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEM 164
           KFKVLSR+ QYEIREVE YFIAETTMPG+ GFD NG+S+SFNVLAEYLFGKNT +E MEM
Sbjct: 61  KFKVLSRKDQYEIREVEPYFIAETTMPGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEM 120

Query: 165 TTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEV 224
           TTPV TR+ QSDG+KMEMTTPVI+KKL+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEV
Sbjct: 121 TTPVFTRRDQSDGKKMEMTTPVITKKLQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEV 180

Query: 225 PKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRR 284
           P+K+VAVVAFSGFVTDE+VK RE KLR AL+ D+QF+VKEGA VEVAQYNPPFTLPFTRR
Sbjct: 181 PRKIVAVVAFSGFVTDEEVKLRESKLRSALRNDKQFQVKEGAPVEVAQYNPPFTLPFTRR 240

Query: 285 NEIALEVERKE 295
           NE+ALEVERK+
Sbjct: 241 NEVALEVERKQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794498|emb|CAN62765.1| hypothetical protein VITISV_021815 [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/251 (81%), Positives = 228/251 (90%)

Query: 45  ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETV 104
           +S FEARVSLV AL SQ SS+SQRLLMDLA+ET KY FP+RFES NLEEALM+VPDLETV
Sbjct: 1   MSGFEARVSLVLALVSQASSVSQRLLMDLASETXKYAFPRRFESSNLEEALMSVPDLETV 60

Query: 105 KFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEM 164
           KFKVLSR+ QYEIREVE YFIAETTMPG+ GFD NG+S+SFNVLAEYLFGKNT +E MEM
Sbjct: 61  KFKVLSRKDQYEIREVEPYFIAETTMPGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEM 120

Query: 165 TTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEV 224
           TTPV TR+ QSDG KMEMTTPVI+KKL+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEV
Sbjct: 121 TTPVFTRRDQSDGXKMEMTTPVITKKLQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEV 180

Query: 225 PKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRR 284
           P+K+VAVVAFSGFVTDE+VK RE KLR AL+ D+QF+VKEGA VEVAQYNPPFTLPF RR
Sbjct: 181 PRKIVAVVAFSGFVTDEEVKLRESKLRSALRNDKQFQVKEGAPVEVAQYNPPFTLPFARR 240

Query: 285 NEIALEVERKE 295
           NE+ALEVERK+
Sbjct: 241 NEVALEVERKQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511075|ref|XP_003625826.1| Heme-binding-like protein [Medicago truncatula] gi|355500841|gb|AES82044.1| Heme-binding-like protein [Medicago truncatula]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/296 (70%), Positives = 247/296 (83%), Gaps = 10/296 (3%)

Query: 3   LCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNN----ERKPISAFEARVSLVFAL 58
           LC PSLS+ S       +++KP K   ++I NS ++NN    +R+ ISAFEAR+SL+FAL
Sbjct: 5   LCNPSLSIQSA-----PISVKPNKT-IISITNSASSNNRVSTQRRTISAFEARISLIFAL 58

Query: 59  ASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIR 118
           ASQ+ SLSQRL+ D+ATETAKY+FPKRFES+ LEEALM VPDLETV FKVL+ R QYEIR
Sbjct: 59  ASQSFSLSQRLVADVATETAKYLFPKRFESRTLEEALMTVPDLETVNFKVLTIRDQYEIR 118

Query: 119 EVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGE 178
           E+E YF+AETTMPG++GFD  G+S+SFNVLAEYLFGKNTK+E MEMTTPV T K QSDG 
Sbjct: 119 EIEPYFVAETTMPGKSGFDFRGSSQSFNVLAEYLFGKNTKKEKMEMTTPVFTTKKQSDGV 178

Query: 179 KMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFV 238
           KM+MTTPV++ K  D+D+W+MSFVMPSKYGANLPLPKD SV IKEV +K VAVV+FSGFV
Sbjct: 179 KMDMTTPVLTTKTVDKDEWKMSFVMPSKYGANLPLPKDSSVAIKEVARKTVAVVSFSGFV 238

Query: 239 TDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 294
            DE+VKRRELKLR+ALK D QF++KEG S+E+AQYNPPF LPF RRNEIALEVE K
Sbjct: 239 NDEEVKRRELKLREALKNDGQFKIKEGTSIEIAQYNPPFALPFQRRNEIALEVEWK 294

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503813|ref|XP_003520697.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/302 (67%), Positives = 248/302 (82%), Gaps = 14/302 (4%)

Query: 1   MLLCKPSLSLISPCTLPKTLTLKPTKKPS-LTIINS------ITTNNERKPISAFEARVS 53
           +LL     S+++P      + +KPTK  S L++ NS      I+++  R+ IS FE+R+S
Sbjct: 7   LLLFSLQSSILTP------IPVKPTKLSSNLSVTNSASYGERISSSTRRRTISPFESRIS 60

Query: 54  LVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRG 113
           L+FALA Q ++LSQRLL D+A ETAKYVFPKRFE++NLEEALM+VP+LETV+FKVLSRR 
Sbjct: 61  LIFALAPQANTLSQRLLADVAAETAKYVFPKRFENRNLEEALMSVPNLETVEFKVLSRRD 120

Query: 114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 173
           QYEIREVE YF+AETTMPG++GFD NGASRSFNVLAEY FGKNT +E MEM TPV T K 
Sbjct: 121 QYEIREVEPYFVAETTMPGKSGFDFNGASRSFNVLAEYHFGKNTTKEKMEMNTPVFTSKN 180

Query: 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVA 233
           QSDG KM+MTTPV++ K+EDQD W+MSFVMPSKYGANLPL KD SVRIKEVP+K++ VV+
Sbjct: 181 QSDGVKMDMTTPVLTTKMEDQDNWKMSFVMPSKYGANLPLAKDSSVRIKEVPRKIIDVVS 240

Query: 234 FSG-FVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292
           FSG FV DE++K+RELKL+DALK D QF++KEG SVEVA+YNPPFTLPF  RNEIALEVE
Sbjct: 241 FSGVFVNDEEIKQRELKLQDALKSDSQFKIKEGTSVEVARYNPPFTLPFQCRNEIALEVE 300

Query: 293 RK 294
            K
Sbjct: 301 WK 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462962|ref|XP_004149204.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus] gi|449500911|ref|XP_004161228.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/293 (67%), Positives = 248/293 (84%), Gaps = 7/293 (2%)

Query: 9   SLISPCTLPKTLTLKPTKKPSL----TIINS--ITTNNERKPISAFEARVSLVFALASQT 62
           S  S C+ P ++T + +   S+    T+ NS  + T+  R+ ISA EAR+SLVFALASQ 
Sbjct: 13  SFGSLCSFP-SITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEARISLVFALASQA 71

Query: 63  SSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVES 122
           S+LSQR+L++LA+ET+KY+ PKRF+S+NLEEALMAVPDLET+KFKVLSRR +YEIREVE 
Sbjct: 72  STLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSRRDEYEIREVEP 131

Query: 123 YFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEM 182
           YFIAETTMPG++GFD  GAS+SFNVLA YLFGKN  RE MEMTTPV+T + +SDGEKM+ 
Sbjct: 132 YFIAETTMPGKSGFDFGGASQSFNVLAAYLFGKNKAREKMEMTTPVLTSQYKSDGEKMDT 191

Query: 183 TTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDED 242
           TTPVI+K ++ +D+W+MSFV+PSKYG N P+P+D SVRI+EVP+K++AVVAFSGFVTD++
Sbjct: 192 TTPVITKNVDGKDQWKMSFVIPSKYGQNFPVPQDTSVRIQEVPRKILAVVAFSGFVTDDE 251

Query: 243 VKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 295
           VK+RE +LRDALK D++F+VK G+ VEVAQYNPPFTLPF RRNEIALEVE+KE
Sbjct: 252 VKKRESRLRDALKNDKEFQVKAGSFVEVAQYNPPFTLPFQRRNEIALEVEKKE 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829544|ref|XP_002882654.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297328494|gb|EFH58913.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/262 (72%), Positives = 230/262 (87%)

Query: 35  SITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEA 94
           +I    + + +SA E+RVSLVFALASQ SS+SQRLL DLA ETAKYVFPKRF S NLEEA
Sbjct: 56  AIRRQRQSQAVSATESRVSLVFALASQASSVSQRLLADLAVETAKYVFPKRFNSSNLEEA 115

Query: 95  LMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFG 154
           LM+VPDLET++F+V+SR  +YEIR+VE YF+AETTMPG TGFD  GAS+SFNVLAEYLFG
Sbjct: 116 LMSVPDLETMEFRVVSRTDKYEIRQVEPYFVAETTMPGETGFDFYGASKSFNVLAEYLFG 175

Query: 155 KNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
           KNT++E MEMTTPV+TRK QS GEKMEMTTPVI+ K +DQ +W+MSFVMPSKYG+NLPLP
Sbjct: 176 KNTRKEKMEMTTPVVTRKAQSVGEKMEMTTPVITTKAKDQTQWRMSFVMPSKYGSNLPLP 235

Query: 215 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
           KD SV+I EVP+K+VAVVAFSG+VTDE+++RRE +LR AL+ D++FRV++G SVEVAQYN
Sbjct: 236 KDSSVKILEVPRKIVAVVAFSGYVTDEEIERREQELRRALQNDKKFRVRDGVSVEVAQYN 295

Query: 275 PPFTLPFTRRNEIALEVERKEE 296
           PPFTLPF RRNE++LEVE KE+
Sbjct: 296 PPFTLPFMRRNEVSLEVESKED 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140257|ref|XP_002323500.1| predicted protein [Populus trichocarpa] gi|222868130|gb|EEF05261.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/262 (73%), Positives = 220/262 (83%), Gaps = 14/262 (5%)

Query: 35  SITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEA 94
           +  T+  R+P+SAFEARVSLV ALASQ S  SQRLL DLA ET KY+FPKR  S++LEEA
Sbjct: 6   TTATSPRRRPMSAFEARVSLVLALASQASYQSQRLLFDLANETTKYLFPKRSGSRDLEEA 65

Query: 95  LMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFG 154
           LMAVPDLET+K+KV SR+  YEIRE+E YF+AETTM G TGF+  GAS+SFNVLAEYLFG
Sbjct: 66  LMAVPDLETLKYKVSSRKEGYEIRELEPYFVAETTMSGETGFNFYGASQSFNVLAEYLFG 125

Query: 155 KNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
           KNT +E MEMTTPVITRKTQ          PV++K    + KWQMSFV+PSKYGANLPLP
Sbjct: 126 KNTMKEKMEMTTPVITRKTQ----------PVMTK----EGKWQMSFVIPSKYGANLPLP 171

Query: 215 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
           KDP+VR++EVP +VVAVVAFSGFVTDE+VK+RELKLR+ALK D +FRVK+ ASVEVAQYN
Sbjct: 172 KDPTVRVEEVPGRVVAVVAFSGFVTDEEVKQRELKLRNALKKDPEFRVKDSASVEVAQYN 231

Query: 275 PPFTLPFTRRNEIALEVERKEE 296
           PPFTLPFTRRNEIALEVERKEE
Sbjct: 232 PPFTLPFTRRNEIALEVERKEE 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2100043	309	AT3G10130 "AT3G10130" [Arabido	0.891	0.854	0.676	1.9e-92
TAIR|locus:2065578	225	SOUL-1 [Arabidopsis thaliana (	0.625	0.822	0.361	8.3e-19
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.574	0.894	0.314	9e-12
UNIPROTKB|F1NMB9	189	HEBP1 "Heme-binding protein 1"	0.564	0.883	0.291	1.1e-09
UNIPROTKB|Q5ISC6	189	HEBP1 "Heme-binding protein 1"	0.567	0.888	0.297	1.1e-09
UNIPROTKB|Q5ZMB2	189	HEBP1 "Heme-binding protein 1"	0.564	0.883	0.291	1.4e-09
UNIPROTKB|Q6DJ66	190	hebp1 "Heme-binding protein 1"	0.520	0.810	0.254	2.5e-09
UNIPROTKB|Q6NU05	190	hebp1 "Heme-binding protein 1"	0.520	0.810	0.260	3.2e-09
UNIPROTKB|E2RNV4	189	HEBP1 "Uncharacterized protein	0.570	0.894	0.273	2.8e-07
UNIPROTKB|Q9NRV9	189	HEBP1 "Heme-binding protein 1"	0.567	0.888	0.292	2.8e-07

TAIR|locus:2100043 AT3G10130 "AT3G10130" [Arabidopsis thaliana (taxid:3702)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 180/266 (67%), Positives = 217/266 (81%)

Query:    33 INSITTNNERKP-ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQ-N 90
             +N       + P +SA E+RVSLV ALASQ SS+SQRLL DLA ETAKYVFPKRF+S  N
Sbjct:    44 VNRAIRRQPQSPAVSATESRVSLVLALASQASSVSQRLLADLAMETAKYVFPKRFDSSTN 103

Query:    91 LEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAE 150
             LEEA M+VPDLET+ F+VL R  +YEIR+VE YF+AET MPG TGFD  GAS+SFNVLAE
Sbjct:   104 LEEAFMSVPDLETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAE 163

Query:   151 YLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGAN 210
             YLFGKNT +E MEMTTPV+TRK QS GEKMEMTTPVI+ K +DQ++W+MSFVMPSKYG+N
Sbjct:   164 YLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKYGSN 223

Query:   211 LPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEV 270
             LPLPKDPSV+I++          FSG+VTDE+++RRE +LR AL+ D++FRV++G S EV
Sbjct:   224 LPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEV 283

Query:   271 AQYNPPFTLPFTRRNEIALEVERKEE 296
             AQYNPPFTLPF RRNE++LEVE KE+
Sbjct:   284 AQYNPPFTLPFMRRNEVSLEVENKED 309

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2065578 SOUL-1 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 77/213 (36%), Positives = 108/213 (50%)

Query:   101 LETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGF--DLNGASRSFNVLAEYL--FGK- 155
             +ET K+ V      YEIRE      AE T    + F  D +G    F +LA+Y+  FGK 
Sbjct:    20 VETPKYTVTKSGDGYEIREYPPAVAAEVTYDA-SEFKGDKDGG---FQLLAKYIGVFGKP 75

Query:   156 -NTKRETMEMTTPVITRKTQS----------DGEKMEMTTPVISKKL--EDQDKW-QMSF 201
              N K E + MT PVIT++ +           + EK+EMT+PV++K+   E + K   M F
Sbjct:    76 ENEKPEKIAMTAPVITKEGEKIAMTAPVITKESEKIEMTSPVVTKEGGGEGRKKLVTMQF 135

Query:   202 VMPSKY--GANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQ 259
             ++PS Y      P P D  V IKE          FSG  ++  V  +  KL   L+ D  
Sbjct:   136 LLPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSEKVKKLSSHLEKDG- 194

Query:   260 FRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292
             F++  G  V +A+YNPP+TLP  R NE+ + VE
Sbjct:   195 FKIT-GDFV-LARYNPPWTLPPFRTNEVMIPVE 225

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 60/191 (31%), Positives = 83/191 (43%)

Query:   101 LETVKFKVLSRRGQ-YEIREVESYFIAETTMPGRTGFDLNGA-SRSFNVLAEYLFGKNTK 158
             L+  K+     +G  YE+R  ++     T +   TG + + A S  F  L +Y+ G N K
Sbjct:    14 LQNPKYTAQESKGDDYEVRTYQATNWVSTVV---TGMEQDQAMSTGFRRLFKYIQGSNEK 70

Query:   159 RETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPS 218
             +  +EMTTPV        G   E T  V             SF +P ++ A+ P P DP 
Sbjct:    71 KSKVEMTTPVSCLIDPGAGPACESTFTV-------------SFYIPEEHQADPPKPTDPD 117

Query:   219 VRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT 278
             V I+           F GF   E      LKL ++LK D   + KE A    A Y+ PF 
Sbjct:   118 VFIESRKELTAFVRTFGGFANSESCCEEILKLIESLKRDGM-KFKE-APYYRAGYDSPFK 175

Query:   279 LPFTRRNEIAL 289
             L   RRNE+ L
Sbjct:   176 LT-GRRNEVWL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NMB9 HEBP1 "Heme-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 56/192 (29%), Positives = 87/192 (45%)

Query:   101 LETVKFKVLSR--RGQ--YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 156
             +ET  ++VLS+  + Q  YE RE E    A   + G+  FD      +  +L +Y+ G N
Sbjct:    13 VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEVTGKP-FDEASKEAALKLL-KYVGGSN 70

Query:   157 TKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
              K   M MT PV IT    +DG                Q K ++   +P+++ A+ P P 
Sbjct:    71 DKGTGMGMTAPVSITAFPAADGSL--------------QQKVKVYLRIPNQFQASPPCPS 116

Query:   216 DPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 275
             D S++I+E          F G+  + D      KL+ AL  +  +R K+        Y+P
Sbjct:   117 DESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYR-KDFYFCN--GYDP 173

Query:   276 PFTLPFTRRNEI 287
             P   P+ RRNE+
Sbjct:   174 PMK-PYGRRNEV 184

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|Q5ISC6 HEBP1 "Heme-binding protein 1" [Sus scrofa (taxid:9823)]

 Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 58/195 (29%), Positives = 90/195 (46%)

Query:   101 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASR-SFNVLAEYLFGK 155
             +ET  ++VLS+  +    YE R  E    A   M   T   ++ A R +   + +Y+ G 
Sbjct:    13 VETWPWQVLSKGDKQDISYEERACEGGKFATVEM---TDKPVDEALREAMPKVMKYVGGS 69

Query:   156 NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
             N K   M MT P+      SDG  ++       KKL+    W   F +P+++ +N P+P 
Sbjct:    70 NDKGIGMGMTVPISFAVFPSDGGSLQ-------KKLK---VW---FRIPNEFQSNPPVPS 116

Query:   216 DPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ-YN 274
             D S++I+E          F G+  + D   R  +LR AL+G    R    + V     Y+
Sbjct:   117 DDSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCR----SDVYFCTGYD 172

Query:   275 PPFTLPFTRRNEIAL 289
             PP   P+ RRNE+ L
Sbjct:   173 PPMK-PYGRRNEVWL 186

GO:0020037 "heme binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZMB2 HEBP1 "Heme-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 56/192 (29%), Positives = 86/192 (44%)

Query:   101 LETVKFKVLSR--RGQ--YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 156
             +ET  ++VLS+  + Q  YE RE E    A   + G+  FD      +  +L +Y+ G N
Sbjct:    13 VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEVTGKP-FDEASKEAALKLL-KYVGGSN 70

Query:   157 TKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
              K   M MT PV IT     DG                Q K ++   +P+++ A+ P P 
Sbjct:    71 DKGAGMGMTAPVSITAFPAEDGSL--------------QQKVKVYLRIPNQFQASPPCPS 116

Query:   216 DPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 275
             D S++I+E          F G+  + D      KL+ AL  +  +R K+        Y+P
Sbjct:   117 DESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYR-KDFYFCN--GYDP 173

Query:   276 PFTLPFTRRNEI 287
             P   P+ RRNE+
Sbjct:   174 PMK-PYGRRNEV 184

GO:0005737 "cytoplasm" evidence=IEA

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q6DJ66 hebp1 "Heme-binding protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 140 (54.3 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 44/173 (25%), Positives = 73/173 (42%)

Query:   115 YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQ 174
             +E RE E      T + G+  FD   +  +   L +Y+ G N K   M MT+PV+     
Sbjct:    31 FEEREYEGGKFVSTEVSGKP-FD-EASKEAVLRLLKYVGGSNQKYAGMGMTSPVVITSYP 88

Query:   175 SDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXF 234
             ++ E ++    V+ +             +PS+Y A+ P+P D ++ I++          F
Sbjct:    89 AENETLQPNVKVLLR-------------IPSQYQADPPVPTDDTIHIEDRESVTFYSTQF 135

Query:   235 SGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
              G+  + D      KLR  L  D  +            Y+PP   P+ RRNE+
Sbjct:   136 GGYAKEADYVSHAAKLRSCLGPDISYHTDH---YMCCGYDPPMK-PYGRRNEV 184

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q6NU05 hebp1 "Heme-binding protein 1" [Xenopus laevis (taxid:8355)]

 Score = 139 (54.0 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 45/173 (26%), Positives = 73/173 (42%)

Query:   115 YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQ 174
             +E RE E      T + G+  FD   +      L +Y+ G N K   M MT+PVI     
Sbjct:    31 FEEREYEGGKFISTEVSGKP-FD-EASKEGVLRLLKYVGGSNNKSAGMGMTSPVIINSYP 88

Query:   175 SDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXF 234
             S+ + ++    V+ +             +PS+Y A+ P+P D +++I++          F
Sbjct:    89 SENDTLQPNVKVLLR-------------IPSQYQADPPVPTDNTIQIEDRESVTLYSTQF 135

Query:   235 SGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
              G+  + D      KLR  L  D  +            Y+PP   P+ RRNE+
Sbjct:   136 GGYAKEADYVSHAAKLRSCLGPDISYH---SDYYMCCGYDPPMK-PYGRRNEV 184

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|E2RNV4 HEBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 53/194 (27%), Positives = 86/194 (44%)

Query:   101 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 156
             +ET  ++V+S+ G+    YE R  E    A   +  +   D  G   +   + +Y+ G N
Sbjct:    13 VETWPWQVVSQGGKEEVSYEERTCEGGRFATVEVTDKP-VD-EGLREAMPKVMKYVGGTN 70

Query:   157 TKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKD 216
              K   M MT PV       D   ++       KKL+    W   F +P+++ +N P+P D
Sbjct:    71 DKGIGMGMTVPVSFAVFPGDDGSLQ-------KKLK---VW---FRIPNQFQSNPPVPTD 117

Query:   217 PSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ-YNP 275
              S++I+E          F G+  + D      +LR AL+G    R    + +     Y+P
Sbjct:   118 DSIKIEERESITVYSLQFGGYAKEADYVAHAAQLRTALEGTATCR----SDIYFCTGYDP 173

Query:   276 PFTLPFTRRNEIAL 289
             P   P+ RRNE+ L
Sbjct:   174 PMK-PYGRRNEVWL 186

GO:0020037 "heme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9NRV9 HEBP1 "Heme-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 57/195 (29%), Positives = 87/195 (44%)

Query:   101 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASR-SFNVLAEYLFGK 155
             +ET  ++VLS+  +    YE R  E    A   +   T   ++ A R +   +A+Y  G 
Sbjct:    13 VETWPWQVLSKGDKEEVAYEERACEGGKFATVEV---TDKPVDEALREAMPKVAKYAGGT 69

Query:   156 NTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
             N K   M MT P+        DG         + KKL+    W   F +P+++ ++ P P
Sbjct:    70 NDKGIGMGMTVPISFAVFPNEDGS--------LQKKLK---VW---FRIPNQFQSDPPAP 115

Query:   215 KDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
              D SV+I+E          F G+  + D   +  +LR AL+G   +R   G       Y+
Sbjct:   116 SDKSVKIEEREGITVYSMQFGGYAKEADYVAQATRLRAALEGTATYR---GDIYFCTGYD 172

Query:   275 PPFTLPFTRRNEIAL 289
             PP   P+ RRNEI L
Sbjct:   173 PPMK-PYGRRNEIWL 186

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0020037 "heme binding" evidence=ISS

GO:0007623 "circadian rhythm" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SR77	HBPL1_ARATH	No assigned EC number	0.7351	0.8513	0.8155	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	3e-61

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score =  191 bits (488), Expect = 3e-61
 Identities = 76/191 (39%), Positives = 100/191 (52%), Gaps = 18/191 (9%)

Query: 100 DLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKR 159
            +ET  + VL R G YEIR  E    AET +   +  D   +   F  LA Y+FGKN   
Sbjct: 1   AVETPPYTVLEREGDYEIRRYEPMVWAETEVDAGS-RD-EASGEGFRRLAGYIFGKNRSG 58

Query: 160 ETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY-GANLPLPKDPS 218
           E + MT PV+        + + MT        E    W +SFVMPS Y    LP P DP 
Sbjct: 59  EKIAMTAPVLQ-------QAIPMTADE-----EGSGAWTVSFVMPSGYQAETLPAPLDPD 106

Query: 219 VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT 278
           VRI+EVP + VAV+ FSG  ++EDV  +  +LR  L+ D    +K      +A YNPP+T
Sbjct: 107 VRIREVPARTVAVIRFSGRASEEDVAEKAAELRAWLEAD---GLKPRGEPFLAGYNPPWT 163

Query: 279 LPFTRRNEIAL 289
            PF RRNE+ +
Sbjct: 164 PPFLRRNEVWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	97.06
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	97.05
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	93.36
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	93.25
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	92.3
PRK10016	156	DNA gyrase inhibitor; Provisional	91.37
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	87.93

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=3.4e-53  Score=370.57  Aligned_cols=175  Identities=42%  Similarity=0.655  Sum_probs=136.7

Q ss_pred             CcCCCCeEEEEecCCeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcc
Q 022483          100 DLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEK  179 (296)
Q Consensus       100 ~~E~P~Y~Vl~~~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~gek  179 (296)
                      ++|||+|+||++.++||||+|++++||+|++.+++.  ..|...||++|++||+|+|+++++|+||+||++++.      
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~--~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~------   72 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSF--EEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVI------   72 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-H--HHHHHHHHHHHHHHHCT-CTT------BS-EEEEEE------
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCCh--hHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEE------
Confidence            579999999999999999999999999999987542  246789999999999999999999999999999873      


Q ss_pred             cccccccccccccCCCeEEEEEEeecCCC-CCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC
Q 022483          180 MEMTTPVISKKLEDQDKWQMSFVMPSKYG-ANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR  258 (296)
Q Consensus       180 i~mT~Pv~~~~~~~~~~~tmsF~lP~~~q-~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g  258 (296)
                       +|++.      .|++.|+|+|+||.+|| ++||+|+|++|+|+++|++++||++|+|+++++++.+++++|+++|+++|
T Consensus        73 -~~~~~------~~~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g  145 (176)
T PF04832_consen   73 -PMTAE------SCEKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDG  145 (176)
T ss_dssp             -ETTTT------TCECEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTT
T ss_pred             -cCCCc------ccCCcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcC
Confidence             23331      25689999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022483          259 QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       259 ~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~  292 (296)
                      +.   +.+.+++|+||+||+++++|||||||+||
T Consensus       146 ~~---~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  146 LK---DKGYYYVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             HH---CCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred             CC---cCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence            63   67899999999999989999999999986

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=97.06  E-value=0.072  Score=45.21  Aligned_cols=152  Identities=17%  Similarity=0.184  Sum_probs=95.8

Q ss_pred             CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022483          114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  193 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~  193 (296)
                      +++|+..++...|.....|...   +...++|.+|+.++..+|-.     .+ +.+......         |-.+..  .
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~---~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~D~---------p~~~~~--~   61 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWE---QTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYYDN---------PDEVPA--E   61 (156)
T ss_pred             ceEEEEccCceEEEEEeecCch---hHHHHHHHHHHHHHHHcCCC-----CC-cEEEEECCC---------CCCCCh--H
Confidence            4789999999999888777321   23467999999999665532     12 334332211         211110  0


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHH-HHHHHhcCCCcceecCCcEEEEE
Q 022483          194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK-LRDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       194 ~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~-L~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      +-.+-++.-+|....  .| +.+..+.+..+|+.++||..+.|.  -+.+.+.-.. +.+||..+|.. . .++ +.+-.
T Consensus        62 ~~R~d~~i~v~~~~~--~~-~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~-~-~~~-p~~E~  133 (156)
T PRK10016         62 KLRCDTVVTVPDDFV--LP-ENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ-M-APK-PCFEV  133 (156)
T ss_pred             HceeeEEEEeCCCcc--cC-CCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc-c-CCC-CCEEE
Confidence            114778889986532  22 223479999999999999999995  4557776666 77899999963 2 222 23334


Q ss_pred             e-CCCCCCCCCCceeEEEEeecc
Q 022483          273 Y-NPPFTLPFTRRNEIALEVERK  294 (296)
Q Consensus       273 Y-DpP~t~p~~RrNEVwi~v~~~  294 (296)
                      | +.|... -.-.-||||+|+.+
T Consensus       134 Y~~~~~~~-~~~~tei~iPI~~~  155 (156)
T PRK10016        134 YLNDGAED-GYWDIEMYVPVQKK  155 (156)
T ss_pred             eCCCCCCC-CcEEEEEEEEeEEC
Confidence            4 345433 22246999999853

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=97.05  E-value=0.041  Score=44.28  Aligned_cols=152  Identities=14%  Similarity=0.135  Sum_probs=96.5

Q ss_pred             CeEEEEeCCeeEEEEEcCCCCccChhh-hhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022483          114 QYEIREVESYFIAETTMPGRTGFDLNG-ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE  192 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a-~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~  192 (296)
                      +++|+.-++...+.....+...  ..+ ....+.+|..++.-.+...    ...+.+..........           .+
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~--~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~-----------~~   64 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYE--EEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNIT-----------DD   64 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHH--HHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSS-----------TG
T ss_pred             CcEEEEECCEEEEEEEEEECCc--hhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEecccccc-----------CC
Confidence            5788889999998877655211  111 4577888888885332111    4555655543321100           00


Q ss_pred             CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHH-HHhcCCCcceecCCcEEEE
Q 022483          193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD-ALKGDRQFRVKEGASVEVA  271 (296)
Q Consensus       193 ~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~-~L~~~g~~~v~~~~~~~~A  271 (296)
                      ..-.+.+++-++...      +...++....+|+..+|+..|.|-.  +.+.+....|.. ||.++|+.  ...+..+-.
T Consensus        65 ~~~~~~~~~~~~~~~------~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~--~~~~~~~E~  134 (155)
T PF06445_consen   65 EEFRYDIGVEVDEDV------PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE--RRDGPDFEI  134 (155)
T ss_dssp             CEEEEEEEEEECTTC------SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE--EESSEEEEE
T ss_pred             cceEEEEEEEEcccc------cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc--cCCCCcEEE
Confidence            122445555555432      4557888999999999999999977  778888999999 99999973  233433334


Q ss_pred             EeCCCCCCCCCCceeEEEEee
Q 022483          272 QYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       272 ~YDpP~t~p~~RrNEVwi~v~  292 (296)
                      .++.|+..+-.-.=||||+|+
T Consensus       135 y~~~~~~~~~~~~~ei~iPik  155 (155)
T PF06445_consen  135 YLNDPDTDEEEYVTEIYIPIK  155 (155)
T ss_dssp             EESSTTTTSCGEEEEEEEEEE
T ss_pred             ECCCCCCCCCceEEEEEEEEC
Confidence            445555333466679999986

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=93.36  E-value=3.9  Score=35.87  Aligned_cols=148  Identities=18%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022483          114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  193 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~  193 (296)
                      ++||+..++..+|.-...|.    ..-..++|.+|+.|-.-+|--.    -+..-+ -+..++.+   .| |    .  .
T Consensus         2 dv~I~e~p~~~VA~~rh~G~----~~~~~~~~~~l~~W~~~~~l~p----~~S~~~-gI~~ddP~---~T-p----~--e   62 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVGD----PATLKQTFEQLIAWRRENGLLP----EQSETL-GIYQDDPD---TT-P----A--E   62 (154)
T ss_pred             CceEEecCCceEEEEEeeCc----HHHHHHHHHHHHHHHHHcCCCC----CCceEE-EEecCCCC---CC-C----H--H
Confidence            78999999999998887772    2235689999999997665322    123333 23333321   11 1    1  1


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEe
Q 022483          194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQY  273 (296)
Q Consensus       194 ~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~Y  273 (296)
                      +=.|-.+-.+|...     .+++..|..-++|+..+||.+|.|.. +.--.--..-+.+||...|+.   ..+.+.+.+|
T Consensus        63 ~~R~D~cv~v~~~~-----~~n~~~v~~~~i~GG~YAV~r~~~~~-d~~~~aw~~if~ewlp~Sg~~---~~d~P~~e~y  133 (154)
T COG3449          63 KCRYDACVVVPEPI-----PENSEGVQLGEIPGGLYAVARFRGTA-DDLAKAWGYIFGEWLPASGYE---PRDRPILERY  133 (154)
T ss_pred             HceeeEEEEcCCcc-----CCCCCceeEeeecCCceEEEEEeccH-HHHHHHHHHHHhhhccccCcc---cCCCchHHHH
Confidence            23567788887322     23557799999999999999999954 222333344556778888753   4566777888


Q ss_pred             CCCCCCCCCCceeEEEEe
Q 022483          274 NPPFTLPFTRRNEIALEV  291 (296)
Q Consensus       274 DpP~t~p~~RrNEVwi~v  291 (296)
                      =.....  .-..|+.+.+
T Consensus       134 ~n~~~~--~~~~e~~vdi  149 (154)
T COG3449         134 LNFPAE--DPEHEIEVDI  149 (154)
T ss_pred             hccCCC--CcceeEEEEE
Confidence            443333  2334444443

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=93.25  E-value=3.6  Score=32.94  Aligned_cols=156  Identities=13%  Similarity=0.137  Sum_probs=85.0

Q ss_pred             eEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccCC
Q 022483          115 YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQ  194 (296)
Q Consensus       115 yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~~  194 (296)
                      +++..-++...+.....+...  .....+.|.+|+.++...+.......  .+++..........     +      ...
T Consensus         2 ~~i~~~~~~~v~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~------~~~   66 (158)
T smart00871        2 VRIVELPAFKVAGLRHRGPYE--EEKIPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPDDT-----P------EGE   66 (158)
T ss_pred             CEEEEcCCceEEEEEeecCcc--cccHHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCCCC-----C------hhH
Confidence            345555566666555544321  11235678888888865543322211  23333222111100     0      011


Q ss_pred             CeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeC
Q 022483          195 DKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN  274 (296)
Q Consensus       195 ~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YD  274 (296)
                      -.+.+++.++...  .    ....+.+..+|+..+++..|.| ...+.+.+-..+|..++..+|.....+.+..+--.++
T Consensus        67 ~~~~~g~~v~~~~--~----~~~~~~~~~~p~~~y~~~~~~g-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~y~~  139 (158)
T smart00871       67 FRYDAGVEVSDEV--E----NPEGVETKEIPAGKYAVFTHKG-GSYDEIQETWEAIYGEWLPNSGYELRDAGPDFEIYLN  139 (158)
T ss_pred             eEEEEEEEeCCCC--C----CCCCceEEEECCCcEEEEEEcC-CCHHHHHHHHHHHHHhhcccCCCccCcCCceEEEEeC
Confidence            2445555555421  1    1246889999999999999999 3467789999999999988875422122333333345


Q ss_pred             CCCC-CCCCCceeEEEEee
Q 022483          275 PPFT-LPFTRRNEIALEVE  292 (296)
Q Consensus       275 pP~t-~p~~RrNEVwi~v~  292 (296)
                      .|.. .+-..+-|++|+|+
T Consensus       140 ~~~~~~~~~~~~ei~ipv~  158 (158)
T smart00871      140 DPADTDPEELVTEIYIPIK  158 (158)
T ss_pred             CCCCCChhHeEEEEEEEcC
Confidence            5432 22234678998874

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=92.30  E-value=0.56  Score=41.08  Aligned_cols=58  Identities=21%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCC
Q 022483          218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTL  279 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~  279 (296)
                      +|.|.+.|+..||..+-.|  ....+.+-.++|.+|.+++|+.  ...+....-.||.|-+.
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~--p~~S~~~gI~~ddP~~T   59 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLL--PEQSETLGIYQDDPDTT   59 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCC--CCCceEEEEecCCCCCC
Confidence            7999999999999999999  7888999999999999999985  23455566677888643

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=91.37  E-value=1.3  Score=37.41  Aligned_cols=68  Identities=18%  Similarity=0.140  Sum_probs=50.7

Q ss_pred             CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCC--CCCCCCCceeEEEEe
Q 022483          218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPP--FTLPFTRRNEIALEV  291 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP--~t~p~~RrNEVwi~v  291 (296)
                      +|.|+++|+..++.++..|...+ .+.+...+|.+++.++|+.   .. .+....||.|  ... -.-|-+|.|.+
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~---~~-~~~~i~~D~p~~~~~-~~~R~d~~i~v   71 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV---PK-EWVAVYYDNPDEVPA-EKLRCDTVVTV   71 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC---CC-cEEEEECCCCCCCCh-HHceeeEEEEe
Confidence            58999999999999999996643 4778889999999999974   23 3677788999  443 23344454444

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=87.93  E-value=1.7  Score=34.66  Aligned_cols=72  Identities=21%  Similarity=0.133  Sum_probs=55.1

Q ss_pred             CeEEEEecCeEEEEEEeCCcCChHH-HHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022483          218 SVRIKEVPKKVVAVVAFSGFVTDED-VKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~F~G~~t~~~-v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~  292 (296)
                      +|+|+++|+.+++..+..|-..+.. +.+..++|.+++...++.  .....++...||.|... ...+...++-+.
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~   74 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS--TDPGPIIGIYYDNPNIT-DDEEFRYDIGVE   74 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC--CSSSSEEEEEEECCTSS-TGCEEEEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc--cCCCcceeEEecccccc-CCcceEEEEEEE
Confidence            5899999999999999999887777 899999999999998753  14556777778888543 255566555444

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
2hva_A	192	Solution Structure Of The Haem-Binding Protein P22h		1e-07
4a1m_A	195	Nmr Structure Of Protoporphyrin-Ix Bound Murine P22		1e-07
2gov_A	195	Solution Structure Of Murine P22hbp Length = 195		1e-07

>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 71  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 130
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 131 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 187
Query: 288 AL 289
            L
Sbjct: 188 WL 189

>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp Length = 195

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 74  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 288 AL 289
            L
Sbjct: 191 WL 192

>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp Length = 195

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 74  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 288 AL 289
            L
Sbjct: 191 WL 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	8e-37
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	7e-36
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	4e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score =  130 bits (326), Expect = 8e-37
 Identities = 50/228 (21%), Positives = 80/228 (35%), Gaps = 23/228 (10%)

Query: 73  LATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLS----RRGQYEIREVESYFIAET 128
              + A  +           E   A   +ET  +K       + G YEIR         T
Sbjct: 15  SLYKKAGTMAEPLQPDPGAAEDAAA-QAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVST 73

Query: 129 TMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVIS 188
           ++              F  L  Y+ GKN K   ++MT PV +      G   E       
Sbjct: 74  SVESMDWDS--AIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSES------ 125

Query: 189 KKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRREL 248
                     +S  +PS+   + P P +  V I++  +  V V +F GF + +  + + L
Sbjct: 126 -------TITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 178

Query: 249 KLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 296
            L   L+ D   +V +      A YN P      R NE+ L  + +  
Sbjct: 179 TLASILREDG--KVFDEKVYYTAGYNSPVK-LLNRNNEVWLIQKNEPT 223

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score =  126 bits (318), Expect = 7e-36
 Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 101 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 156
           +ET  ++VLS  G+    YE R  E    A   +  +   +      +   + +Y+ G N
Sbjct: 18  VETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDE--ALREAMPKIMKYVGGTN 75

Query: 157 TKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKD 216
            K   M MT PV      ++   ++              K ++ F +P+++  + P P D
Sbjct: 76  DKGVGMGMTVPVSFAVFPNEDGSLQK-------------KLKVWFRIPNQFQGSPPAPSD 122

Query: 217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPP 276
            SV+I+E     V    F G+  + D      +LR  L+G       +G     A Y+PP
Sbjct: 123 ESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP--ATYQGDVYYCAGYDPP 180

Query: 277 FTLPFTRRNEIAL 289
              P+ RRNE+ L
Sbjct: 181 MK-PYGRRNEVWL 192

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score =  122 bits (307), Expect = 4e-34
 Identities = 47/201 (23%), Positives = 75/201 (37%), Gaps = 22/201 (10%)

Query: 100 DLETVKFKVLS----RRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGK 155
            +ET  +K       + G YEIR         T++              F  L  Y+ GK
Sbjct: 22  AVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDS--AIQTGFTKLNSYIQGK 79

Query: 156 NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
           N K   ++MT PV +      G   E                 +S  +PS+   + P P 
Sbjct: 80  NEKEMKIKMTAPVTSYVEPGSGPFSES-------------TITISLYIPSEQQFDPPRPL 126

Query: 216 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 275
           +  V I++  +  V V +F GF + +  + + L L   L+ D   +V +      A YN 
Sbjct: 127 ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNS 184

Query: 276 PFTLPFTRRNEIALEVERKEE 296
           P      R NE+ L  + +  
Sbjct: 185 PVK-LLNRNNEVWLIQKNEPT 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 44/297 (14%), Positives = 93/297 (31%), Gaps = 83/297 (27%)

Query: 36  ITTNNERKPISAFEARVSLVFALASQTSSLSQRLL-MDLATETAKYVFPKRFESQNLEEA 94
           +   N   P +  E    L++ +    +S S     + L   + +    +  +S+  E  
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 95  LMA---VPDLETVK-F----KVL--SRRGQYEIREVESYFIAETTMPGRTGFDLNGASRS 144
           L+    V + +    F    K+L  +R      ++V  +  A TT    T   L+  S +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRF-----KQVTDFLSAATT----THISLDHHSMT 297

Query: 145 FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTP----VISKKLEDQ----DK 196
                       T  E   +    +  + Q    ++  T P    +I++ + D     D 
Sbjct: 298 L-----------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 197 W------QMSFVMPSKYGANLP-------------LPKDPSVRIKEVPKKVVAVV----- 232
           W      +++ ++ S     L               P      I   P  +++++     
Sbjct: 347 WKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPS--AHI---PTILLSLIWFDVI 400

Query: 233 -AFSGFVTDEDVKRRELKLRDALKG-----DRQFRVKEGASVE-------VAQYNPP 276
            +    V ++  K   ++ +   +           +K     E       V  YN P
Sbjct: 401 KSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	98.32
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	98.24
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	96.72
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	96.36
3lur_A	158	Putative bacterial transcription regulation prote;	92.34
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	90.37
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	86.9
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	82.86

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=3.9e-53  Score=381.06  Aligned_cols=179  Identities=26%  Similarity=0.385  Sum_probs=160.9

Q ss_pred             CCCcCCCCeEEEEe----cCCeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEee
Q 022483           98 VPDLETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT  173 (296)
Q Consensus        98 ~~~~E~P~Y~Vl~~----~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~  173 (296)
                      ++++|||+|+||++    +++||||+|++++||+|++.+.+.  .+|...||++|++||+|+|.++++|+||+||++++.
T Consensus        20 ~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~   97 (212)
T 3r8j_A           20 AQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE   97 (212)
T ss_dssp             --CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEE
T ss_pred             cCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence            56899999999999    899999999999999999976421  236788999999999999999999999999999987


Q ss_pred             cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022483          174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA  253 (296)
Q Consensus       174 ~~~geki~mT~Pv~~~~~~~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~  253 (296)
                      ++++       |.      +++.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++|+++
T Consensus        98 p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~  164 (212)
T 3r8j_A           98 PGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASI  164 (212)
T ss_dssp             CTTS-------TT------SCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             cCCC-------cc------cCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence            7654       33      3679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeecc
Q 022483          254 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK  294 (296)
Q Consensus       254 L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~~~  294 (296)
                      |+++|+.  ..++.|++|+||+||++ |+|||||||.++.+
T Consensus       165 L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e  202 (212)
T 3r8j_A          165 LREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE  202 (212)
T ss_dssp             HHHTTCC--BCSSCEEEEESSSSSCC-SSSCEEEEEEBCC-
T ss_pred             HHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEeCCC
Confidence            9999974  25667899999999997 99999999998853

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=2.6e-53  Score=377.42  Aligned_cols=177  Identities=28%  Similarity=0.395  Sum_probs=159.8

Q ss_pred             CCCcCCCCeEEEEecCC----eEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEee
Q 022483           98 VPDLETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT  173 (296)
Q Consensus        98 ~~~~E~P~Y~Vl~~~~~----yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~  173 (296)
                      |++.|||+|+||++.++    ||||+|+++.||+|++.+.+.  .+|...||++|++||+|+|.++++|+||+||++++.
T Consensus        15 ~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~   92 (195)
T 2gov_A           15 FGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVF   92 (195)
T ss_dssp             CCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEE
T ss_pred             cCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCCh--hHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEEc
Confidence            67899999999999887    999999999999999977432  246788999999999999999999999999999876


Q ss_pred             cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022483          174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA  253 (296)
Q Consensus       174 ~~~geki~mT~Pv~~~~~~~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~  253 (296)
                      ++++       |.      |.+.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|++++.++.+++++|+++
T Consensus        93 p~~~-------~~------~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~  159 (195)
T 2gov_A           93 PNED-------GS------LQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTT  159 (195)
T ss_dssp             ECTT-------SC------EEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             CCCC-------CC------cCceEEEEEEcchhcccCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHH
Confidence            6543       32      3568999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022483          254 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       254 L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~  292 (296)
                      |+++|+.  ..++.|++|+||+||++ ++|||||||..+
T Consensus       160 L~~~g~~--~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~~  195 (195)
T 2gov_A          160 LEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVKA  195 (195)
T ss_dssp             TTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEEC
T ss_pred             HHHCCCc--ccCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence            9999975  24567899999999998 999999999863

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=5e-53  Score=383.86  Aligned_cols=182  Identities=26%  Similarity=0.373  Sum_probs=154.7

Q ss_pred             hhc-CCCcCCCCeEEEEe----cCCeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceE
Q 022483           95 LMA-VPDLETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVI  169 (296)
Q Consensus        95 ~~~-~~~~E~P~Y~Vl~~----~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~  169 (296)
                      +.+ ++++|||+|+||++    +++||||+|++++||+|++.+.+.  .+|...||++|++||+|+|.++++|+||+||+
T Consensus        35 ~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~  112 (227)
T 4b0y_A           35 EDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVT  112 (227)
T ss_dssp             ------CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEE
T ss_pred             cccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEE
Confidence            444 68999999999999    899999999999999999976421  23678999999999999999999999999999


Q ss_pred             EEeecCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHH
Q 022483          170 TRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK  249 (296)
Q Consensus       170 t~~~~~~geki~mT~Pv~~~~~~~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~  249 (296)
                      +++.++++       |+      +++.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++
T Consensus       113 t~~~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~  179 (227)
T 4b0y_A          113 SYVEPGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLT  179 (227)
T ss_dssp             EEEECCC---------C------CCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHH
T ss_pred             EEEecCCC-------cc------cCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHH
Confidence            99877654       33      367999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeecc
Q 022483          250 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK  294 (296)
Q Consensus       250 L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~~~  294 (296)
                      |+++|+++|+.  ..++.|++|+||+||++ |+|||||||.++.+
T Consensus       180 L~~~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e  221 (227)
T 4b0y_A          180 LASILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE  221 (227)
T ss_dssp             HHHHHHHHTCC--BCSSCEEEEECC---CC-CSSCEEEEEEBC--
T ss_pred             HHHHHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEECCC
Confidence            99999999964  25667899999999997 99999999998754

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=98.32  E-value=1.3e-05  Score=63.49  Aligned_cols=153  Identities=16%  Similarity=0.135  Sum_probs=98.9

Q ss_pred             CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022483          114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  193 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~  193 (296)
                      +++|+.+++...+.....|..  + +....+|.+|++++...|-..      .+.+.... .+        |..+.  ..
T Consensus         2 ~~~i~~~~~~~v~~~~~~g~~--~-~~i~~~~~~l~~~~~~~~~~~------~~~~gi~~-~~--------~~~~~--~~   61 (157)
T 1jyh_A            2 NYEIKQEEKRTVAGFHLVGPW--E-QTVKKGFEQLMMWVDSKNIVP------KEWVAVYY-DN--------PDETP--AE   61 (157)
T ss_dssp             CCEEEEECCEEEEEEEEESCH--H-HHHHHHHHHHHHHHHHTTCCC------SEEEEEEC-SC--------TTTSC--GG
T ss_pred             CCEEEEeCCeEEEEEEEECCc--h-hhHHHHHHHHHHHHHHcCCCC------CcEEEEEC-CC--------CCCCC--HH
Confidence            478999999999988776521  1 234578999999997665321      24443221 11        11110  01


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEE
Q 022483          194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       194 ~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      .-.+.+++.+|....  +| |.+..+.+.++|+.++||..|.|...  .+.+.-.+|. +||.++|+.   ..+.+.+-.
T Consensus        62 ~~~~~~~~~v~~~~~--~~-~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---~~~~~~~E~  133 (157)
T 1jyh_A           62 KLRCDTVVTVPGYFT--LP-ENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---MLPKPCFEV  133 (157)
T ss_dssp             GCEEEEEEEECTTCC--CC-SSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---ECSSCEEEE
T ss_pred             HheEEEEEEecCccc--cC-CCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---cCCCceEEE
Confidence            236778888886443  22 44678999999999999999999763  3667777775 999999852   233345666


Q ss_pred             eC-CCCCCCCCCceeEEEEeeccC
Q 022483          273 YN-PPFTLPFTRRNEIALEVERKE  295 (296)
Q Consensus       273 YD-pP~t~p~~RrNEVwi~v~~~~  295 (296)
                      |. .|.. +-..+.||||+|+.++
T Consensus       134 Y~~~~~~-~~~~~tei~ipi~~~~  156 (157)
T 1jyh_A          134 YLNNGAE-DGYWDIEMYVAVQPKH  156 (157)
T ss_dssp             ECSCHHH-HSSEEEEEEEEEEEC-
T ss_pred             ecCCCCC-cccEEEEEEEEeeeCC
Confidence            73 3333 3456789999998764

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=98.24  E-value=4.6e-05  Score=62.59  Aligned_cols=148  Identities=11%  Similarity=0.083  Sum_probs=98.4

Q ss_pred             CeEEEEeCCeeEEEEEcCCCCccChh-hhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022483          114 QYEIREVESYFIAETTMPGRTGFDLN-GASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE  192 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~-a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~  192 (296)
                      +++|+..++...|.....+.. .+.. ...+.|.+|+.++..+|-     ..+.|.+......+.               
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~-~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~~---------------   66 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTM-SELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMSA---------------   66 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECH-HHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCTT---------------
T ss_pred             ccEEEeeCCceEEEEEeecCH-HHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCCC---------------
Confidence            678999999999987766531 1111 123678999999876552     335555544432110               


Q ss_pred             CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEE
Q 022483          193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       193 ~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      ..-.+.+++-++..      .+.+.+|.+.++|+.++|+..+.|-..+  +.+.-.+|.+||.++|+. .  .+..+-..
T Consensus        67 ~~~~~~~~~~v~~~------~~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~-~--~~~~~E~Y  135 (158)
T 3e0h_A           67 GTFEVEFGFPVEGG------VEGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD-L--SGEAYEIY  135 (158)
T ss_dssp             SCEEEEEEEECCSC------CCCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC-E--EEEEEEEE
T ss_pred             cceEEEEEEEeCCC------CCCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC-c--CCCEEEEE
Confidence            12245555555432      2234689999999999999999997653  788888999999999964 2  23344444


Q ss_pred             eCCCCC-CCCCCceeEEEEeec
Q 022483          273 YNPPFT-LPFTRRNEIALEVER  293 (296)
Q Consensus       273 YDpP~t-~p~~RrNEVwi~v~~  293 (296)
                      +|.|.. .+-..+.||||+|+.
T Consensus       136 ~~~p~~~~~~~~~tei~ipv~~  157 (158)
T 3e0h_A          136 LDNPAETAPDQLRTRVSLMLHE  157 (158)
T ss_dssp             CSCTTSSCGGGCEEEEEEEECC
T ss_pred             eCCCCCCCHHHhEEEEEEEEcC
Confidence            577774 445678999999974

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=96.72  E-value=0.056  Score=48.25  Aligned_cols=152  Identities=14%  Similarity=0.064  Sum_probs=93.1

Q ss_pred             cCCeEEEEeCCeeEEEEEc-CCCCccChhhh-hHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccc
Q 022483          112 RGQYEIREVESYFIAETTM-PGRTGFDLNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK  189 (296)
Q Consensus       112 ~~~yEiR~Y~~~~wasT~v-~g~s~~~~~a~-~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~  189 (296)
                      ..+++|+..++..++.... .+.    .+.. ...|.+|..++...+     +..+.|+.......+     ++ +    
T Consensus       121 ~~~v~I~~~p~~~v~~~~~~~~~----~~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~-----~~-~----  181 (278)
T 1r8e_A          121 LGEVFVLDEEEIRIIQTEAEGIG----PENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQP-----YT-S----  181 (278)
T ss_dssp             TTCCEEEEECCEEEEEEECTTCC----TTTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCC-----CS-C----
T ss_pred             CCceEEEEcCCeEEEEeecCCCC----hHhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHH-----hh-c----
Confidence            3468999999998887765 331    1223 467899999995543     334557654433211     00 0    


Q ss_pred             cccCCCeE-EEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcE
Q 022483          190 KLEDQDKW-QMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASV  268 (296)
Q Consensus       190 ~~~~~~~~-tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~  268 (296)
                      .  .-..| .+++.++...   .|.|.+..|.+..+|+..+|+..+.|..  +.+.+....|.+||.++|+. +  .+..
T Consensus       182 ~--~~~~~~~~~v~v~~~~---~~l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~-~--~g~~  251 (278)
T 1r8e_A          182 I--DEMTYRHIFTPVLTNK---QISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDV  251 (278)
T ss_dssp             G--GGCCCSEEEEECCCCS---CCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEE
T ss_pred             C--CCcceeEEEEEecCcc---ccccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc-c--CCCe
Confidence            0  01112 2344443221   1223456799999999999999999955  45677788899999999963 2  2334


Q ss_pred             EEEEeCCCCCC--CCCCceeEEEEee
Q 022483          269 EVAQYNPPFTL--PFTRRNEIALEVE  292 (296)
Q Consensus       269 ~~A~YDpP~t~--p~~RrNEVwi~v~  292 (296)
                      +--.++.|+..  +-.-.-||||+|+
T Consensus       252 ~E~y~~~~~~~~~~~~~~teI~iPv~  277 (278)
T 1r8e_A          252 YELIIPIHYSPKKQEEYRVEMKIRIA  277 (278)
T ss_dssp             EEEEEESCCCSSSCCCEEEEEEEEEC
T ss_pred             EEEEeecccccCChhheEEEEEEEec
Confidence            44444566542  2234679999986

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=96.36  E-value=0.094  Score=45.36  Aligned_cols=165  Identities=10%  Similarity=0.019  Sum_probs=97.0

Q ss_pred             CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhh------ccCCCCCcc-cCCC-cceEEEeecCCCcccccccc
Q 022483          114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYL------FGKNTKRET-MEMT-TPVITRKTQSDGEKMEMTTP  185 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI------~G~N~~~~k-I~MT-aPV~t~~~~~~geki~mT~P  185 (296)
                      +++|+.-++...+.....|... + ....++|.+|+..+      ..++-.... -..+ .|........+        |
T Consensus        24 ~v~i~~~p~~~v~~i~~~g~~~-~-~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~--------~   93 (211)
T 3b49_A           24 KPERIFVPEMNFLMVDGKGDPD-G-EEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEG--------K   93 (211)
T ss_dssp             SCEEEEEEEEEEEEEEEESCTT-S-HHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESS--------S
T ss_pred             CcEEEEECCeeEEEEEeecCCC-H-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCC--------c
Confidence            5788888999898877666311 1 13457899999987      433321111 1111 24333222111        1


Q ss_pred             cccccccCCCeEEEEEEeecCCCC------------CCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022483          186 VISKKLEDQDKWQMSFVMPSKYGA------------NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA  253 (296)
Q Consensus       186 v~~~~~~~~~~~tmsF~lP~~~q~------------~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~  253 (296)
                      ...+ ...+-.|.+++-+|...+.            ..|.+....|.+.++|+..+++..+.|-..  .+.+-..+|.+|
T Consensus        94 ~~~~-~~~~~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~w  170 (211)
T 3b49_A           94 FDLK-DRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQF  170 (211)
T ss_dssp             CCTT-CGGGEEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHH
T ss_pred             cccC-chhheEEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHH
Confidence            1000 0112367778877864321            023334467999999999999999999765  366777888899


Q ss_pred             HhcCCCcceec--CCcEEEEEeCCCCCC-CCCCceeEEEEee
Q 022483          254 LKGDRQFRVKE--GASVEVAQYNPPFTL-PFTRRNEIALEVE  292 (296)
Q Consensus       254 L~~~g~~~v~~--~~~~~~A~YDpP~t~-p~~RrNEVwi~v~  292 (296)
                      |.++|+.. ..  ++..+--.+|.|... +-.-+-||+++|+
T Consensus       171 l~~~g~~~-~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~  211 (211)
T 3b49_A          171 METEGLRN-DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS  211 (211)
T ss_dssp             HHHHTCCB-CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred             HHHCCCcc-ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence            99999721 11  143434444667543 3334679999875

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=92.34  E-value=1  Score=36.60  Aligned_cols=73  Identities=12%  Similarity=0.023  Sum_probs=50.9

Q ss_pred             CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeec
Q 022483          217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  293 (296)
Q Consensus       217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~~  293 (296)
                      ..+...++|+.++||.++.|-..+ .+.+--..+. +||-+.|..   ..+.+.+-.|+..-..+-.-.-||||+|++
T Consensus        85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~  158 (158)
T 3lur_A           85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---VKSAPFFELYQDGDTTSEKYITEIWMPVKG  158 (158)
T ss_dssp             GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred             CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence            468889999999999999996544 4555555554 689888863   233456667866433223456799999974

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=90.37  E-value=1.1  Score=39.70  Aligned_cols=73  Identities=11%  Similarity=0.093  Sum_probs=49.4

Q ss_pred             CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC----CCCCCC-CCCceeEEEE
Q 022483          217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN----PPFTLP-FTRRNEIALE  290 (296)
Q Consensus       217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~YD----pP~t~p-~~RrNEVwi~  290 (296)
                      ..+...++|+.++||..+.|.  .+.+.+--..|. +||.+.|.. .  .+.+.+-.|.    ++...+ -.-.-||||+
T Consensus       210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~-~--~~~p~~E~Y~~~~~~~~~~~~~~~~tEI~iP  284 (292)
T 1d5y_A          210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT-R--RKGQDIERYYPAEDAKAGDRPINLRCELLIP  284 (292)
T ss_dssp             TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE-E--CSSCEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred             CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc-c--CCCCcEEEEeeccccCCCCCCCceEEEEEEE
Confidence            468899999999999999994  556788888886 999999963 1  2223344554    333221 1224599999


Q ss_pred             eecc
Q 022483          291 VERK  294 (296)
Q Consensus       291 v~~~  294 (296)
                      |+.+
T Consensus       285 I~~k  288 (292)
T 1d5y_A          285 IRRK  288 (292)
T ss_dssp             EECC
T ss_pred             eehh
Confidence            9865

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=86.90  E-value=8.4  Score=31.87  Aligned_cols=66  Identities=11%  Similarity=0.088  Sum_probs=47.2

Q ss_pred             CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC--CcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022483          217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR--QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       217 ~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g--~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~  292 (296)
                      ..+...++|+.++||.++.|-.. +.+.+--+.+..||-..|  ..   ....+-+-.|+...      .-||||+|+
T Consensus       103 ~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~---~~~~pdfE~Y~~~~------~~eI~IpI~  170 (170)
T 3gk6_A          103 SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHK---RAYTTDFEYYKSAN------TVEISIAVR  170 (170)
T ss_dssp             TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCC---BCCSEEEEECCSSS------EEEEEEEBC
T ss_pred             CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcce---ecCcCCEEEECCCC------eEEEEEEEC
Confidence            57888999999999999999554 367777777777999988  42   23456677786531      679999985

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=82.86  E-value=6.1  Score=31.43  Aligned_cols=70  Identities=11%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             CeEEEEecCeEEEEEEeCCcCCh--HHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeec
Q 022483          218 SVRIKEVPKKVVAVVAFSGFVTD--EDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  293 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~F~G~~t~--~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~v~~  293 (296)
                      +|+|+++|+.+|+.++..|...+  ..+.+.-.+|.+++..+|+.   ..+..+...||  +.. -.-+=|+.++|..
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~---~~g~~~~iy~d--~~~-~~~~~~~~~~v~~   79 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS---PSGPPFARYFG--MSA-GTFEVEFGFPVEG   79 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC---CSSCCEEEEES--CTT-SCEEEEEEEECCS
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCeEEEEec--CCC-cceEEEEEEEeCC
Confidence            68999999999999999997532  23446667899999999863   23444444455  222 2345677777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	4e-40

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  136 bits (343), Expect = 4e-40
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 100 DLETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGK 155
            +ET  ++VLS  G+    YE R  E    A   +  +   D      +   + +Y+ G 
Sbjct: 6   SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKP-VD-EALREAMPKIMKYVGGT 63

Query: 156 NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
           N K   M MT PV      ++   ++              K ++ F +P+++  + P P 
Sbjct: 64  NDKGVGMGMTVPVSFAVFPNEDGSLQ-------------KKLKVWFRIPNQFQGSPPAPS 110

Query: 216 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 275
           D SV+I+E     V    F G+  + D      +LR  L+G       +G     A Y+P
Sbjct: 111 DESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP--ATYQGDVYYCAGYDP 168

Query: 276 PFTLPFTRRNEI 287
           P   P+ RRNE+
Sbjct: 169 PMK-PYGRRNEV 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	97.85
d1r8ea2	157	Multidrug-binding domain of transcription activato	96.86
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	83.62

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-52  Score=363.79  Aligned_cols=174  Identities=28%  Similarity=0.405  Sum_probs=156.8

Q ss_pred             CCcCCCCeEEEEecC----CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeec
Q 022483           99 PDLETVKFKVLSRRG----QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQ  174 (296)
Q Consensus        99 ~~~E~P~Y~Vl~~~~----~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~  174 (296)
                      .++|||+|+||++.+    +||||+|++++||||++.+++.  .+|...||++|++||+|+|+++++|+||+||++++.+
T Consensus         5 ~~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~~~~~~~--~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~   82 (184)
T d2gova1           5 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFP   82 (184)
T ss_dssp             CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEE
T ss_pred             ccccCCCcEEEEECCccCCCEEEEecCCceEEEEEecCCCh--hhHHHhhhHHHhheeccCCCCCcccccccceEEEEec
Confidence            478999999999866    7999999999999999987542  2467889999999999999999999999999999877


Q ss_pred             CCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHH
Q 022483          175 SDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDAL  254 (296)
Q Consensus       175 ~~geki~mT~Pv~~~~~~~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L  254 (296)
                      +++       +      .|.+.|+|+|+||++|++++|+|+|++|+|+++|+++|||++|+|+++++++.+++++|+++|
T Consensus        83 ~~~-------~------~~~~~~~m~F~lP~~~~~~~P~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L  149 (184)
T d2gova1          83 NED-------G------SLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTL  149 (184)
T ss_dssp             CTT-------S------CEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHT
T ss_pred             CCC-------C------cccCcEEEEEEcchhhcccCCCCccccceeeccCcceEEEEEeCCcccHHHHHHHHHHHHHHH
Confidence            654       1      146789999999999998999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEE
Q 022483          255 KGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALE  290 (296)
Q Consensus       255 ~~~g~~~v~~~~~~~~A~YDpP~t~p~~RrNEVwi~  290 (296)
                      +++|+.  ..++.+++|+||+||++ |+|||||||.
T Consensus       150 ~~~g~~--~~~~~~~~a~Yd~P~~p-~~R~NEVw~v  182 (184)
T d2gova1         150 EGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLV  182 (184)
T ss_dssp             TTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEE
T ss_pred             HHCCCc--ccCCCEEEEEeCCCCCC-CCcceeEEEE
Confidence            999974  24556789999999996 9999999994

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=0.00012  Score=57.60  Aligned_cols=152  Identities=16%  Similarity=0.153  Sum_probs=96.5

Q ss_pred             CeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022483          114 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  193 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~~  193 (296)
                      +|||+..++.++|.....|..   .+...++|.+|+.++..++     +..+.++.....  +        |..+..  .
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~---~e~i~~~w~~l~~~~~~~~-----~~~~~~~~~~~~--~--------p~~~~~--~   61 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKN-----IVPKEWVAVYYD--N--------PDETPA--E   61 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH---HHHHHHHHHHHHHHHHHTT-----CCCSEEEEEECS--C--------TTTSCG--G
T ss_pred             CcEEEEECCEEEEEEEEEcCc---HHHHHHHHHHHHHHHHHhC-----CCCCCceEEEec--C--------cCcCCc--c
Confidence            689999999999998877631   2335688999999997644     333444332211  1        111111  1


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEE
Q 022483          194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       194 ~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L-~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      .-.+.+++.++....  .| ..+..|.+.++|+.++|+..+.|-..+  +.+....| .+||.++|.. .  .+.+.+-.
T Consensus        62 ~~~~~~~v~v~~~~~--~~-~~~~~i~~~~lp~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~-~--~~~p~~E~  133 (155)
T d1jyha_          62 KLRCDTVVTVPGYFT--LP-ENSEGVILTEITGGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYE-M--LPKPCFEV  133 (155)
T ss_dssp             GCEEEEEEEECTTCC--CC-SSCTTCEEEEECCEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEE-E--CSSCEEEE
T ss_pred             ceeEEEEEEcCCccc--cC-cccceEEEEEECCccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCe-E--CCCccEEE
Confidence            336778888887553  23 233569999999999999999997543  34444455 6899999952 2  22344445


Q ss_pred             eC-CCCCCCCCCceeEEEEeecc
Q 022483          273 YN-PPFTLPFTRRNEIALEVERK  294 (296)
Q Consensus       273 YD-pP~t~p~~RrNEVwi~v~~~  294 (296)
                      |. .|...+. -.=||||+|+++
T Consensus       134 Y~~~~~~~~~-~~~ei~iPIk~k  155 (155)
T d1jyha_         134 YLNNGAEDGY-WDIEMYVAVQPK  155 (155)
T ss_dssp             ECSCHHHHSS-EEEEEEEEEEEC
T ss_pred             EcCCCCCCCC-EEEEEEEEEEEC
Confidence            53 3433322 224999999875

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.86  E-value=0.027  Score=44.65  Aligned_cols=153  Identities=15%  Similarity=0.077  Sum_probs=96.2

Q ss_pred             CCeEEEEeCCeeEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022483          113 GQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE  192 (296)
Q Consensus       113 ~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~geki~mT~Pv~~~~~~  192 (296)
                      ++.-|+.=+..+++.+...+...  .+....+|.+|++|+...|.     -...++-..+.-.+..+            .
T Consensus         2 ~ev~i~~~~ei~i~~~~~e~i~p--~~~~~~~~~~L~~~~~~~~~-----~~~~~~G~~~~~~~~~~------------~   62 (157)
T d1r8ea2           2 GEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADG-----FTNNSYGATFSFQPYTS------------I   62 (157)
T ss_dssp             TCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHS-----SCCCCEEEEECCCCCSC------------G
T ss_pred             CceEEeccCcEEEEEEEecccCc--hHHHHHHHHHHHHHHHHcCC-----CCCCceEEEEECCCccc------------C
Confidence            45567777888889888765322  12346799999999977653     23445555443221100            0


Q ss_pred             CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEE
Q 022483          193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       193 ~~~~~tmsF~lP~~~q~~pP~P~d~~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      ....+.-.|.....  ..-+...++++.+...|+.++++..|.|..  +.+.+.-++|.+|+.++|+. +  .+..+--.
T Consensus        63 ~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~lp~G~ya~~~~~G~y--~~~~~~y~~l~~~~~~~g~~-~--~g~~~E~y  135 (157)
T d1r8ea2          63 DEMTYRHIFTPVLT--NKQISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDVYELI  135 (157)
T ss_dssp             GGCCCSEEEEECCC--CSCCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEEEEEE
T ss_pred             cceEEEEEEEeccc--ccccCCccCCceEEecCCeEEEEEEEEECc--cchHHHHHHHHHHHHhcCcC-c--CCCeEEEE
Confidence            12234333333211  122334457899999999999999999976  46788888999999999963 2  34444445


Q ss_pred             eCCCCCC--CCCCceeEEEEe
Q 022483          273 YNPPFTL--PFTRRNEIALEV  291 (296)
Q Consensus       273 YDpP~t~--p~~RrNEVwi~v  291 (296)
                      ++.|+..  +-.-.-||.|+|
T Consensus       136 ~~d~~~~~~~~~~~teI~ipv  156 (157)
T d1r8ea2         136 IPIHYSPKKQEEYRVEMKIRI  156 (157)
T ss_dssp             EESCCCSSSCCCEEEEEEEEE
T ss_pred             EcCCCCCCCHHHeEEEEEEEe
Confidence            5667654  234457888776

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=83.62  E-value=2  Score=32.05  Aligned_cols=70  Identities=20%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCC-CCCceeEEEEee
Q 022483          218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLP-FTRRNEIALEVE  292 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~F~G~~t~~~v~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YDpP~t~p-~~RrNEVwi~v~  292 (296)
                      +++|+++|+.+|+..+..|-. .+.+.+--++|.+++.++++.   . .......||.|-..+ -.-+-++.+.|.
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~-~e~i~~~w~~l~~~~~~~~~~---~-~~~~~~~~~~p~~~~~~~~~~~~~v~v~   72 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV---P-KEWVAVYYDNPDETPAEKLRCDTVVTVP   72 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCC---C-SEEEEEECSCTTTSCGGGCEEEEEEEEC
T ss_pred             CcEEEEECCEEEEEEEEEcCc-HHHHHHHHHHHHHHHHHhCCC---C-CCceEEEecCcCcCCccceeEEEEEEcC
Confidence            478999999999999988854 445888889999999999863   2 344556677765432 223567777665